nils-herrmann/clean_scirepeval huggingface dataset:
Correlated Stochastic Block Models: Exact Graph Matching with Applications to Recovering Communities
Authors: Miklos Z. Racz, Anirudh Sridhar

We consider the task of learning latent community structure from multiple correlated networks. First, we study the problem of learning the latent vertex correspondence between two edge-correlated stochastic block models, focusing on the regime where the average degree is logarithmic in the number of vertices. We derive the precise information-theoretic threshold for exact recovery: above the threshold there exists an estimator that outputs the true correspondence with probability close to 1, while below it no estimator can recover the true correspondence with probability bounded away from 0. As an application of our results, we show how one can exactly recover the latent communities using \emph{multiple} correlated graphs in parameter regimes where it is information-theoretically impossible to do so using just a single graph.
Posterior Collapse and Latent Variable Non-identifiability
Authors: Yixin Wang, David Blei, John Patrick Cunningham

Variational autoencoders model high-dimensional data by positing
low-dimensional latent variables that are mapped through a flexible
distribution parametrized by a neural network. Unfortunately,
variational autoencoders often suffer from posterior collapse: the
posterior of the latent variables is equal to its prior, rendering the
variational autoencoder useless as a means to produce meaningful
representations. Existing approaches to posterior collapse often
attribute it to the use of neural networks or optimization issues due
to variational approximation. In this paper, we consider posterior
collapse as a problem of latent variable non-identifiability. We prove
that the posterior collapses if and only if the latent variables are
non-identifiable in the generative model. This fact implies that
posterior collapse is not a phenomenon specific to the use of flexible
distributions or approximate inference. Rather, it can occur in
classical probabilistic models even with exact inference, which we
also demonstrate. Based on these results, we propose a class of
latent-identifiable variational autoencoders, deep generative models
which enforce identifiability without sacrificing flexibility. This
model class resolves the problem of latent variable
non-identifiability by leveraging bijective Brenier maps and
parameterizing them with input convex neural networks, without special
variational inference objectives or optimization tricks. Across
synthetic and real datasets, latent-identifiable variational
autoencoders outperform existing methods in mitigating posterior
collapse and providing meaningful representations of the data.
Can contrastive learning avoid shortcut solutions?
Authors: Joshua David Robinson, Li Sun, Ke Yu, kayhan Batmanghelich, Stefanie Jegelka, Suvrit Sra

The generalization of representations learned via contrastive learning depends crucially on what features of the data are extracted. However, we observe that the contrastive loss does not always sufficiently guide which features are extracted, a behavior that can negatively impact the performance on downstream tasks via “shortcuts", i.e., by inadvertently suppressing important predictive features.  We find that feature extraction is influenced by  the difficulty of the so-called instance discrimination task (i.e., the task of discriminating pairs of similar points from pairs of dissimilar ones). Although harder pairs improve the representation of some features, the improvement comes at the cost of suppressing previously well represented features. In response, we propose implicit feature modification (IFM), a method for altering positive and negative samples in order to guide contrastive models towards capturing a wider variety of predictive features. Empirically, we observe that IFM reduces feature suppression, and as a result improves performance on vision and medical imaging tasks.
Gradient-based Hyperparameter Optimization Over Long Horizons
Authors: Paul Micaelli, Amos Storkey

Gradient-based hyperparameter optimization has earned a widespread popularity in the context of few-shot meta-learning, but remains broadly impractical for tasks with long horizons (many gradient steps), due to memory scaling and gradient degradation issues. A common workaround is to learn hyperparameters online, but this introduces greediness which comes with a significant performance drop. We propose forward-mode differentiation with sharing (FDS), a simple and efficient algorithm which tackles memory scaling issues with forward-mode differentiation, and gradient degradation issues by sharing hyperparameters that are contiguous in time. We provide theoretical guarantees about the noise reduction properties of our algorithm, and demonstrate its efficiency empirically by differentiating through $\sim 10^4$ gradient steps of unrolled optimization. We consider large hyperparameter search ranges on CIFAR-10 where we significantly outperform greedy gradient-based alternatives, while achieving $\times 20$ speedups compared to the state-of-the-art black-box methods.
Federated Split Task-Agnostic  Vision Transformer for COVID-19 CXR Diagnosis
Authors: Sangjoon Park, Gwanghyun Kim, Jeongsol Kim, Boah Kim, Jong Chul Ye

Federated learning, which shares the weights of the neural network across clients, is gaining attention in the healthcare sector as it enables training on a large corpus of decentralized data while maintaining data privacy. For example, this enables neural network training for COVID-19 diagnosis on chest X-ray (CXR) images without collecting patient CXR data across multiple hospitals. Unfortunately, the exchange of the weights quickly consumes the network bandwidth if highly expressive network architecture is employed. So-called split learning partially solves this problem by dividing a neural network into a client and a server part, so that the client part of the network takes up less extensive computation resources and bandwidth. However, it is not clear how to find the optimal split without sacrificing the overall network performance. To amalgamate these methods and thereby maximize their distinct strengths, here we show that the Vision Transformer, a recently developed deep learning architecture with straightforward decomposable configuration, is ideally suitable for split learning without sacrificing performance. Even under the non-independent and identically distributed data distribution which emulates a real collaboration between hospitals using CXR datasets from multiple sources, the proposed framework was able to attain performance comparable to data-centralized training. In addition, the proposed framework along with heterogeneous multi-task clients also improves individual task performances including the diagnosis of COVID-19, eliminating the need for sharing large weights with innumerable parameters. Our results affirm the suitability of Transformer for collaborative learning in medical imaging and pave the way forward for future real-world implementations.
Habitat 2.0: Training Home Assistants to Rearrange their Habitat
Authors: Andrew Szot, Alexander Clegg, Eric Undersander, Erik Wijmans, Yili Zhao, John M Turner, Noah D Maestre, Mustafa Mukadam, Devendra Singh Chaplot, Oleksandr Maksymets, Aaron Gokaslan, Vladimír Vondruš, Sameer Dharur, Franziska Meier, Wojciech Galuba, Angel X Chang, Zsolt Kira, Vladlen Koltun, Jitendra Malik, Manolis Savva, Dhruv Batra

We introduce Habitat 2.0 (H2.0), a simulation platform for training virtual robots in interactive 3D environments and complex physics-enabled scenarios. We make comprehensive contributions to all levels of the embodied AI stack – data, simulation, and benchmark tasks. Specifically, we present: (i) ReplicaCAD: an artist-authored, annotated, reconfigurable 3D dataset of apartments (matching real spaces) with articulated objects (e.g. cabinets and drawers that can open/close); (ii) H2.0: a high-performance physics-enabled 3D simulator with speeds exceeding 25,000 simulation steps per second (850x real-time) on an 8-GPU node, representing 100x speed-ups over prior work; and, (iii) Home Assistant Benchmark (HAB): a suite of common tasks for assistive robots (tidy the house, stock groceries, set the table) that test a range of mobile manipulation capabilities. These large-scale engineering contributions allow us to systematically compare deep reinforcement learning (RL) at scale and classical sense-plan-act (SPA) pipelines in long-horizon structured tasks, with an emphasis on generalization to new objects, receptacles, and layouts. We find that (1) flat RL policies struggle on HAB compared to hierarchical ones; (2) a hierarchy with independent skills suffers from ‘hand-off problems’, and (3) SPA pipelines are more brittle than RL policies.
SILG: The Multi-domain Symbolic Interactive Language Grounding Benchmark
Authors: Victor Zhong, H. J. Austin Wang, Sida Wang, Karthik R Narasimhan, Luke Zettlemoyer

Existing work in language grounding typically study single environments. How do we build unified models that apply across multiple environments? We propose the multi-environment Symbolic Interactive Language Grounding benchmark (SILG), which unifies a collection of diverse grounded language learning environments under a common interface. SILG consists of grid-world environments that require generalization to new dynamics, entities, and partially observed worlds (RTFM, Messenger, NetHack), as well as symbolic counterparts of visual worlds that re- quire interpreting rich natural language with respect to complex scenes (ALFWorld, Touchdown). Together, these environments provide diverse grounding challenges in richness of observation space, action space, language specification, and plan com- plexity. In addition, we propose the first shared model architecture for RL on these environments, and evaluate recent advances such as egocentric local convolution, recurrent state-tracking, entity-centric attention, and pretrained LM using SILG. Our shared architecture achieves comparable performance to environment-specific architectures. Moreover, we find that many recent modelling advances do not result in significant gains on environments other than the one they were designed for. This highlights the need for a multi-environment benchmark. Finally, the best models significantly underperform humans on SILG, which suggests ample room for future work. We hope SILG enables the community to quickly identify new methodolo- gies for language grounding that generalize to a diverse set of environments and their associated challenges.
Risk Minimization from Adaptively Collected Data: Guarantees for Supervised and Policy Learning
Authors: Aurelien Bibaut, Nathan Kallus, Maria Dimakopoulou, Antoine Chambaz, Mark van der Laan

Empirical risk minimization (ERM) is the workhorse of machine learning, whether for classification and regression or for off-policy policy learning, but its model-agnostic guarantees can fail when we use adaptively collected data, such as the result of running a contextual bandit algorithm. We study a generic importance sampling weighted ERM algorithm for using adaptively collected data to minimize the average of a loss function over a hypothesis class and provide first-of-their-kind generalization guarantees and fast convergence rates. Our results are based on a new maximal inequality that carefully leverages the importance sampling structure to obtain rates with the good dependence on the exploration rate in the data. For regression, we provide fast rates that leverage the strong convexity of squared-error loss. For policy learning, we provide regret guarantees that close an open gap in the existing literature whenever exploration decays to zero, as is the case for bandit-collected data. An empirical investigation validates our theory.
E(n) Equivariant Normalizing Flows
Authors: Victor Garcia Satorras, Emiel Hoogeboom, Fabian Bernd Fuchs, Ingmar Posner, Max Welling

This paper introduces a generative model equivariant to Euclidean symmetries: E(n) Equivariant Normalizing Flows (E-NFs). To construct E-NFs, we take the discriminative E(n) graph neural networks and integrate them as a differential equation to obtain an invertible equivariant function: a continuous-time normalizing flow. We demonstrate that E-NFs considerably outperform baselines and existing methods from the literature on particle systems such as DW4 and LJ13, and on molecules from QM9 in terms of log-likelihood. To the best of our knowledge, this is the first flow that jointly generates molecule features and positions in 3D.
Uncertainty-Driven Loss for Single Image Super-Resolution
Authors: Qian Ning, Weisheng Dong, Xin Li, Jinjian Wu, Guangming Shi

In low-level vision such as single image super-resolution (SISR), traditional MSE or L_1 loss function treats every pixel equally with the assumption that the importance of all pixels is the same. However, it has been long recognized that texture and edge areas carry more important visual information than smooth areas in photographic images. How to achieve such spatial adaptation in a principled manner has been an open problem in both traditional model-based and modern learning-based approaches toward SISR. In this paper, we propose a new adaptive weighted loss for SISR to train deep networks focusing on challenging situations such as textured and edge pixels with high uncertainty. Specifically, we introduce variance estimation characterizing the uncertainty on a pixel-by-pixel basis into SISR solutions so the targeted pixels in a high-resolution image (mean) and their corresponding uncertainty (variance) can be learned simultaneously. Moreover, uncertainty estimation allows us to leverage conventional wisdom such as sparsity prior for regularizing SISR solutions. Ultimately, pixels with large certainty (e.g., texture and edge pixels) will be prioritized for SISR according to their importance to visual quality. For the first time, we demonstrate that such uncertainty-driven loss can achieve better results than MSE or L_1 loss for a wide range of network architectures. Experimental results on three popular SISR networks show that our proposed uncertainty-driven loss has achieved better PSNR performance than traditional loss functions without any increased computation during testing. The code is available at https://see.xidian.edu.cn/faculty/wsdong/Projects/UDL-SR.htm
Training Neural Networks with Fixed Sparse Masks
Authors: Yi-Lin Sung, Varun Nair, Colin Raffel

During typical gradient-based training of deep neural networks, all of the model's parameters are updated at each iteration. Recent work has shown that it is possible to update only a small subset of the model's parameters during training, which can alleviate storage and communication requirements. In this paper, we show that it is possible to induce a fixed sparse mask on the model’s parameters that selects a subset to update over many iterations. Our method constructs the mask out of the $k$ parameters with the largest Fisher information as a simple approximation as to which parameters are most important for the task at hand. In experiments on parameter-efficient transfer learning and distributed training, we show that our approach matches or exceeds the performance of other methods for training with sparse updates while being more efficient in terms of memory usage and communication costs. We release our code publicly to promote further applications of our approach.
Contrastive Reinforcement Learning of Symbolic Reasoning Domains
Authors: Gabriel Poesia, WenXin Dong, Noah Goodman

Abstract symbolic reasoning, as required in domains such as mathematics and logic, is a key component of human intelligence. Solvers for these domains have important applications, especially to computer-assisted education. But learning to solve symbolic problems is challenging for machine learning algorithms. Existing models either learn from human solutions or use hand-engineered features, making them expensive to apply in new domains. In this paper, we instead consider symbolic domains as simple environments where states and actions are given as unstructured text, and binary rewards indicate whether a problem is solved. This flexible setup makes it easy to specify new domains, but search and planning become challenging. We introduce five environments inspired by the Mathematics Common Core Curriculum, and observe that existing Reinforcement Learning baselines perform poorly. We then present a novel learning algorithm, Contrastive Policy Learning (ConPoLe) that explicitly optimizes the InfoNCE loss, which lower bounds the mutual information between the current state and next states that continue on a path to the solution. ConPoLe successfully solves all four domains. Moreover, problem representations learned by ConPoLe enable accurate prediction of the categories of problems in a real mathematics curriculum. Our results suggest new directions for reinforcement learning in symbolic domains, as well as applications to mathematics education.
Reverse-Complement Equivariant Networks for DNA Sequences
Authors: Vincent Mallet, Jean-Philippe Vert

As DNA sequencing technologies keep improving in scale and cost, there is a growing need to develop machine learning models to analyze DNA sequences, e.g., to decipher regulatory signals from DNA fragments bound by a particular protein of interest.  As a double helix made of two complementary strands, a DNA fragment can be sequenced as two equivalent, so-called reverse complement (RC) sequences of nucleotides. To take into account this inherent symmetry of the data in machine learning models can facilitate learning. In this sense, several authors have recently proposed particular RC-equivariant convolutional neural networks (CNNs). However, it remains unknown whether other RC-equivariant architecture exist, which could potentially increase the set of basic models adapted to DNA sequences for practitioners. Here, we close this gap by characterizing the set of all linear RC-equivariant layers, and show in particular that new architectures exist beyond the ones already explored. We further discuss RC-equivariant pointwise nonlinearities adapted to different architectures, as well as RC-equivariant embeddings of $k$-mers as an alternative to one-hot encoding of nucleotides. We show experimentally that the new architectures can outperform existing ones.
R-Drop: Regularized Dropout for Neural Networks
Authors: xiaobo liang, Lijun Wu, Juntao Li, Yue Wang, Qi Meng, Tao Qin, Wei Chen, Min Zhang, Tie-Yan Liu

Dropout is a powerful and widely used technique to regularize the training of deep neural networks. Though effective and performing well, the randomness introduced by dropout causes unnegligible inconsistency between training and inference. In this paper, we introduce a simple consistency training strategy to regularize dropout, namely R-Drop, which forces the output distributions of different sub models generated by dropout to be consistent with each other. Specifically, for each training sample, R-Drop minimizes the bidirectional KL-divergence between the output distributions of two sub models sampled by dropout. Theoretical analysis reveals that R-Drop reduces the above inconsistency. Experiments on $\bf{5}$ widely used deep learning tasks ($\bf{18}$ datasets in total), including neural machine translation, abstractive summarization, language understanding, language modeling, and image classification, show that R-Drop is universally effective. In particular, it yields substantial improvements when applied to fine-tune large-scale pre-trained models, e.g., ViT, RoBERTa-large, and BART, and achieves state-of-the-art (SOTA) performances with the vanilla Transformer model on WMT14 English$\to$German translation ($\bf{30.91}$ BLEU) and WMT14 English$\to$French translation ($\bf{43.95}$ BLEU), even surpassing models trained with extra large-scale data and expert-designed advanced variants of Transformer models. Our code is available at GitHub\footnote{\url{https://github.com/dropreg/R-Drop}}.
Generalization of Model-Agnostic Meta-Learning Algorithms: Recurring and Unseen Tasks
Authors: Alireza Fallah, Aryan Mokhtari, Asuman E. Ozdaglar

In this paper, we study the generalization properties of Model-Agnostic Meta-Learning (MAML) algorithms for supervised learning problems. We focus on the setting in which we train the MAML model over $m$ tasks, each with $n$ data points, and characterize its generalization error from two points of view: First, we assume the new task at test time is one of the training tasks, and we show that, for strongly convex objective functions, the expected excess population loss is bounded by $\mathcal{O}(1/mn)$. Second, we consider the MAML algorithm's generalization to an unseen task and show that the resulting generalization error depends on the total variation distance between the underlying distributions of the new task and the tasks observed during the training process. Our proof techniques rely on the connections between algorithmic stability and generalization bounds of algorithms. In particular, we propose a new definition of stability for meta-learning algorithms, which allows us to capture the role of both the number of tasks $m$ and number of samples per task $n$ on the generalization error of MAML.
Optimizing Reusable Knowledge for Continual Learning via Metalearning
Authors: Julio Hurtado, Alain Raymond, Alvaro Soto

When learning tasks over time, artificial neural networks suffer from a problem known as Catastrophic Forgetting (CF). This happens when the weights of a network are overwritten during the training of a new task causing forgetting of old information. To address this issue, we propose MetA Reusable Knowledge or MARK, a new method that fosters weight reusability instead of overwriting when learning a new task. Specifically, MARK keeps a set of shared weights among tasks. We envision these shared weights as a common Knowledge Base (KB) that is not only used to learn new tasks, but also enriched with new knowledge as the model learns new tasks. Key components behind MARK are two-fold. On the one hand, a metalearning approach provides the key mechanism to incrementally enrich the KB with new knowledge and to foster weight reusability among tasks. On the other hand, a set of trainable masks provides the key mechanism to selectively choose from the KB relevant weights to solve each task. By using MARK, we achieve state of the art results in several popular benchmarks, surpassing the best performing methods in terms of average accuracy by over 10% on the 20-Split-MiniImageNet dataset, while achieving almost zero forgetfulness using 55% of the number of parameters. Furthermore, an ablation study provides evidence that, indeed, MARK is learning reusable knowledge that is selectively used by each task.
Drop, Swap, and Generate: A Self-Supervised Approach for Generating Neural Activity
Authors: Ran Liu, Mehdi Azabou, Max Dabagia, Chi-Heng Lin, Mohammad Gheshlaghi Azar, Keith B Hengen, Michal Valko, Eva L Dyer

Meaningful and simplified representations of neural activity can yield insights into how and what information is being processed within a neural circuit. However, without labels, finding representations that reveal the link between the brain and behavior can be challenging. Here, we introduce a novel unsupervised approach for learning disentangled representations of neural activity called Swap-VAE. Our approach combines a generative modeling framework with an instance-specific alignment loss that tries to maximize the representational similarity between transformed views of the input (brain state). These transformed (or augmented) views are created by dropping out neurons and jittering samples in time, which intuitively should lead the network to a representation that maintains both temporal consistency and invariance to the specific neurons used to represent the neural state. Through evaluations on both synthetic data and neural recordings from hundreds of neurons in different primate brains, we show that it is possible to build representations that disentangle neural datasets along relevant latent dimensions linked to behavior.