nils-herrmann/clean_scirepeval huggingface dataset:
Vesiculo-bullous disorders of the neonate.

This is the first of three articles which outline the diagnoses to be considered when vesiculo-bullous lesions are identified in the neonate, children, and adults. This paper presents a brief sketch of blistering disorders which may occur during the first few weeks of life. Vesiculo-bullous lesions in the neonate may represent benign, infectious, genetic, or life-threatening disorders. Early recognition, appropriate diagnostic procedures, and specific therapeutic interventions can be vital in reducing potential morbidity and mortality. General guidelines for diagnostic procedures and therapeutic interventions are discussed, along with some of the newer etiologic and epidemiologic concepts.

Field of study: Medicine
Temporal dynamics of immune response following prolonged myocardial ischemia/reperfusion with and without cyclosporine A

Understanding the dynamics of the immune response following late myocardial reperfusion is critical for the development of immunomodulatory therapy for myocardial infarction (MI). Cyclosporine A (CSA) possesses multiple therapeutic applications for MI, but its effects on the inflammation caused by acute MI are not clear. This study aimed to determine the dynamics of the immune response following myocardial ischemia/reperfusion (I/R) and the effects of CSA in a mouse model of prolonged myocardial ischemia designated to represent the human condition of late reperfusion. Adult C57BL/6 mice were subjected to 90 min of closed-chest myocardial I/R, which induced severe myocardial injury and excessive inflammation in the heart. Multicomponent analysis of the immune response caused by prolonged I/R revealed that the peak of cytokines/chemokines in the systemic circulation was synchronized with the maximal influx of neutrophils and T-cells in the heart 1 day after MI. The peak of cytokine/chemokine secretion in the infarcted heart coincided with the maximal macrophage and natural killer cell infiltration on day 3 after MI. The cellular composition of the mediastinal lymph nodes changed similarly to that of the infarcted hearts. CSA (10 mg/kg/day) given after prolonged I/R impaired heart function, enlarged the resulting scar, and reduced heart vascularization. It did not change the content of immune cells in hearts exposed to prolonged I/R, but the levels of MCP-1 and MIP-1α (hearts) and IL-12 (hearts and serum) were significantly reduced in the CSA-treated group in comparison to the untreated group, indicating alterations in immune cell function. Our findings provide new knowledge necessary for the development of immunomodulatory therapy targeting the immune response after prolonged myocardial ischemia/reperfusion.

Field of study: Biology, Chemistry, Medicine
Regulation of glutamate transporter GLAST and GLT-1 expression in astrocytes by estrogen.

Estrogen influences neuronal development and a broad spectrum of neural functions. In addition, several lines of evidence suggest a role as neuroprotective factor for estrogen in the CNS. Neuroprotection can result from direct estrogen-neuron interactions or be mediated indirectly involving the regulation of physiological properties of nonneuronal cells, such as astrocytes and microglia. Increased l-glutamate levels are associated with neurotoxic and neurodegenerative processes in the brain. Thus, the removal of l-glutamate from the extracellular space by astrocytes through the astroglial glutamate transporters GLT-1 and GLAST appears essential for maintaining a homeostatic milieu for neighboring neurons. We have therefore studied the influence of 17beta-estradiol on l-glutamate metabolism in cultured astrocytes from the neonate mouse midbrain using quantitative RT-PCR and Western blotting for both transporters as well as functional l-glutamate uptake studies. The administration of estrogen significantly increased the expression of GLT-1 and GLAST on the mRNA and protein level. Likewise, specific l-glutamate uptake by astrocytes was elevated after estrogen exposure and mimicked by dbcAMP stimulation. Induction of transporter expression and l-glutamate uptake were sensitive to ICI 182,780 treatment suggesting estrogen action through nuclear estrogen receptors. These findings indicate that estrogen can prevent l-glutamate-related cell death by decreasing extracellular l-glutamate levels through an increased l-glutamate uptake capacity by astrocytes.

Field of study: Biology
Experimentally consistent atomistic modeling of bulk and local structure in liquids and disordered materials by empirical potential structure refinement

This article presents an overview of the use of the empirical potential structure refinement (EPSR) technique for generating three-dimensional atomistic models of liquids and structurally disordered solids that are consistent with experimental neutron and X-ray scattering data. The extension of this technique through the calculation of extended X-ray absorption fine structure (EXAFS) spectra is outlined, and the benefits of this are demonstrated for a range of systems and in particular for our ability to address structural questions of importance in solution chemistry. The model systems chosen as examples for structural analysis are (i) liquid gallium, (ii) silica glass, and (iii) a 1 m aqueous solution of YCl3. The advantages of this analytical approach for addressing chemically specific structural questions in disordered systems are discussed within the context of the experimental alternatives based on the techniques of neutron scattering with isotopic substitution and anomalous X-ray scattering.

Field of study: Chemistry
Effects of red yeast rice prescription (LipoCol Forte) on adverse outcomes of surgery.

The influence of red yeast rice (RYR) on perioperative outcome remains unknown.



We aimed to compare the complications and mortality after surgery between patients treated with and without RYR prescription.



In this surgical cohort study of 3.6 million surgical patients who underwent major inpatient surgeries, 2581 patients who used RYR prescription pre-operatively were compared with 25 810 non-RYR patients selected by matching for age and sex.



Patients' demographics and medical conditions were collected from the claims data of the National Health Insurance in Taiwan. Complications and mortality after major surgeries in association with RYR prescription were investigated by calculating adjusted odds ratios (ORs) and 95% confidence intervals (CIs) by multiple logistic regression.



Compared with patients without RYR prescription, patients prescribed RYR had lower risks of post-operative bleeding (OR 0.36, 95% CI 0.15-0.89), pneumonia (OR 0.54, 95% CI 0.36-0.83), stroke (OR 0.66, 95% CI 0.47-0.92) and 30-day in-hospital mortality (OR 0.37, 95% CI 0.15-0.92). Decreased risk of intensive care (OR 0.64, 95% CI 0.54-0.77), shorter length of hospital stay (P < 0.001) and lower medical expenditures (P = 0.0008) during the index surgical admission were also noted for patients with RYR prescription compared to those for patients without RYR prescription.



This study showed a potentially positive effect of RYR on outcomes after major surgeries. However, patient non-compliance for taking medication should be noted. Our findings require future prospective studies to validate RYR prescription for improving perioperative outcomes.

Field of study: Medicine
Consistency of estimators of population scaled parameters using composite likelihood

Composite likelihood methods have become very popular for the analysis of large-scale genomic data sets because of the computational intractability of the basic coalescent process and its generalizations: It is virtually impossible to calculate the likelihood of an observed data set spanning a large chromosomal region without using approximate or heuristic methods. Composite likelihood methods are approximate methods and, in the present article, assume the likelihood is written as a product of likelihoods, one for each of a number of smaller regions that together make up the whole region from which data is collected. A very general framework for neutral coalescent models is presented and discussed. The framework comprises many of the most popular coalescent models that are currently used for analysis of genetic data. Assume data is collected from a series of consecutive regions of equal size. Then it is shown that the observed data forms a stationary, ergodic process. General conditions are given under which the maximum composite estimator of the parameters describing the model (e.g. mutation rates, demographic parameters and the recombination rate) is a consistent estimator as the number of regions tends to infinity.

Field of study: Biology, Mathematics
Reaction of 5,5-Dimethyl-2-oxotetrahydrofuran-4-ylacetohydrazide with Aldehydes and Ketones

The reaction of 5,5-dimethyl-2-oxotetrahydrofuran-4-ylacetohydrazide with a series of aldehydes and ketones led to the synthesis of systems which, according to the 1H NMR spectra, exist exclusively in the linear form. According to the mass spectra, however, in the gas phase some of the compounds can also exist partly in the cyclic form.

Field of study: Chemistry
THE CANDIDATE CLUSTER AND PROTOCLUSTER CATALOG (CCPC). II. SPECTROSCOPICALLY IDENTIFIED STRUCTURES SPANNING 2 < z < 6.6

We have developed a search methodology to identify galaxy protoclusters at $z>2.74$, and implemented it on a sample of $\sim$14,000 galaxies with previously measured redshifts. The results of this search are recorded in the Candidate Cluster and Protocluster Catalog (CCPC). The catalog contains 12 clusters that are highly significant overdensities ($\delta_{gal}>7$), 6 of which are previously known. We also identify another 31 candidate protoclusters (including 4 previously identified structures) of lower overdensity. CCPC systems vary over a wide range of physical sizes and shapes, from small, compact groups to large, extended, and filamentary collections of galaxies. This variety persists over the range from $z=3.71$ to $z=2.74$. These structures exist as galaxy overdensities ($\delta_{gal}$) with a mean value of 2, similar to the values found for other protoclusters in the literature. The median number of galaxies for CCPC systems is 11. Virial mass estimates are large for these redshifts, with thirteen cases apparently having $M > 10^{15}\, M_{\odot}$. If these systems are virialized, such masses would pose a challenge to $\Lambda$CDM.

Field of study: Physics
Research Progresses of Determination of Perfluorinated Compounds in Environmental Water and Solid Samples

Perfluorinated compounds (PFCs), a group of persistent organic pollutants, have been widely detected in environmental media and posed great threats to human health. The researches on environmental pollution and health risk of PFCs have become the hot subject in recent years. The advanced and reliable analytical methods for determination of PFCs are urgently needed since various homologs and isomers of PFCs are detected at trace levels (ng g−1 or μg L−1) in environment. At present, studies on analytical methods of trace PFCs in environmental samples have been extensively carried out in China and abroad. However, reviews which systematically discuss the sample pretreatment, analytical method, and matrix effect of determination of PFCs in complex environmental matrixes are hardly available. Therefore, the present review highlights the pretreatment methods, matrix effects, and detection techniques (especially isomers) of PFCs in environmental samples (water, sediment, sludge, soil and plant). It hopes that this review will provide valuable references for the environmental researches on PFCs.

Field of study: Chemistry
Family-Centered Practices

Quantitative and qualitative research evidence is reviewed and synthesized with regard to the family-centeredness of early intervention, preschool, and elementary and secondary school practices. Early intervention and school practices are not as family-centered as is generally claimed, and one finds less presumption of being family-centered at each level from early intervention to preschool to elementary school to secondary school programs. The need for better research is noted, and research that would advance our understanding of family-centered practices is suggested.

Field of study: Education
SEU measurements on HFETs and HFET SRAMs

The single-event-upset (SEU) response of n/sup +/-AlGaAs/GaAs heterostructure field-effect transistors (HFETs) and HFET static random access memories (SRAMs) was evaluated by measuring their response to focused-electron-beam pulses. Initially the pulses were used to measure and model HFET drain and gate SEU responses. Circuit simulations using these SEU models predicted that an HFT memory is most vulnerable to a single-particle event in the area between the drain and the source (drain hit) of the OFF pull-down HFET. Subsequent testing of an HFET SRAM cell confirmed the above prediction. These SEU evaluations of HFETs and HFET memories show that measurements on individual HFETs and circuit simulations of SEU hits can be used to predict the SEU response of HFET memories.

Field of study: Physics
Characterization of anti-podoplanin monoclonal antibodies: critical epitopes for neutralizing the interaction between podoplanin and CLEC-2.

Podoplanin (Aggrus) is a mucin-type sialoglycoprotein that is known as a useful marker for lymphatic endothelium and tumor-initiating cells (TICs). Interaction between podoplanin and C-type lectin-like receptor-2 (CLEC-2) is reported to be critical for podoplanin-induced platelet aggregation and cancer metastasis. Recently, several anti-human podoplanin antibodies have been created; however, these anti-podoplanin antibodies have not been well characterized. Five anti-podoplanin antibodies (NZ-1, D2-40, AB3, 18H5, and a rabbit polyclonal antibody) were investigated using ELISA, Western blot, and flow cytometry with synthesized podoplanin peptides and deletion mutants of recombinant podoplanin. The epitope of NZ-1 is platelet aggregation-stimulating (PLAG) domain-2/3; the epitope of D2-40, AB3, and 18H5 is PLAG1/2. The epitopes of D2-40 and AB3 are quite similar, although 18H5 is different from D2-40 and AB3. Using flow cytometric analysis, NZ-1 partially inhibited the interaction between podoplanin and CLEC-2, although other antibodies did not. In conclusion, the two most frequently used anti-podoplanin antibodies, D2-40 and AB3, have similar properties, although several studies have reported differences. NZ-1 neutralizes the interaction between podoplanin and CLEC-2, which may lead to the development of therapeutic antibodies against podoplanin-dependent cancer metastasis.

Field of study: Biology
Extension of Symmetric Spaces and Restriction of Weyl Groups and Invariant Polynomials

Polynomial invariants are fundamental objects in analysis on Lie groups and symmetric spaces. Invariant differential operators on symmetric spaces are described by Weyl group invariant polynomial. In this article we give a simple criterion that ensure that the restriction of invariant polynomials to subspaces is surjective. In another paper we will apply our criterion to problems in Fourier analysis on projective/injective limits, specifically to theorems of Paley--Wiener type.

Field of study: Mathematics
Crystallographic and kinetic study of riboflavin synthase from Brucella abortus, a chemotherapeutic target with an enhanced intrinsic flexibility.

Riboflavin synthase (RS) catalyzes the last step of riboflavin biosynthesis in microorganisms and plants, which corresponds to the dismutation of two molecules of 6,7-dimethyl-8-ribityllumazine to yield one molecule of riboflavin and one molecule of 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione. Owing to the absence of this enzyme in animals and the fact that most pathogenic bacteria show a strict dependence on riboflavin biosynthesis, RS has been proposed as a potential target for antimicrobial drug development. Eubacterial, fungal and plant RSs assemble as homotrimers lacking C3 symmetry. Each monomer can bind two substrate molecules, yet there is only one active site for the whole enzyme, which is located at the interface between two neighbouring chains. This work reports the crystallographic structure of RS from the pathogenic bacterium Brucella abortus (the aetiological agent of the disease brucellosis) in its apo form, in complex with riboflavin and in complex with two different product analogues, being the first time that the structure of an intact RS trimer with bound ligands has been solved. These crystal models support the hypothesis of enhanced flexibility in the particle and also highlight the role of the ligands in assembling the unique active site. Kinetic and binding studies were also performed to complement these findings. The structural and biochemical information generated may be useful for the rational design of novel RS inhibitors with antimicrobial activity.

Field of study: Chemistry
Dietary trends and management of hyperphosphatemia among patients with chronic kidney disease: an international survey of renal care professionals.

The objective of this study was to review the opinions and experiences of renal care professionals to examine dietary trends among patients with chronic kidney disease (CKD) and problems associated with the clinical management of hyperphosphatemia.



This was an online survey comprising open and closed questions requesting information on patient dietary trends and the clinical management of hyperphosphatemia. The study was conducted in 4 European countries (the Netherlands, Spain, Sweden, and the United Kingdom).



Participants were 84 renal care professionals.



This was an online survey.



Responder-reported experiences and perceptions of patient dietary trends and hyperphosphatemia management were assessed.



Most survey responders (56%) observed an increase in the consumption of processed convenience food, 48% noticed an increase in the consumption of foods rich in phosphorus-containing additives, and 60% believed that there has been a trend of increasing patient awareness of the phosphorus content of food. Patients undergoing hemodialysis (HD) were most likely to experience difficulties in following advice on dietary phosphorus restriction (38% of responders estimated that 25-50% of their patients experienced difficulties, and 29% estimated that 51-75% experienced difficulties). Maintaining protein intake and restricting dietary phosphorus were perceived as being equally important by at least half of responders for predialysis patients (56%) and for those undergoing peritoneal dialysis and HD (54% and 50%, respectively). There were international variations in dietary trends and hyperphosphatemia management.



Although most responders have observed a trend of increasing awareness of the phosphorus content of food among patients with CKD, the survey results indicate that many patients continue to experience difficulties when attempting to restrict dietary phosphorus. The survey responses reflect the global trend of increasing consumption of processed convenience foods and phosphorus-containing additives, which has implications for the management of hyperphosphatemia in patients with CKD.

Field of study: Medicine
Role of gene regulation in the anticancer activity of carotenoids

There is extensive evidence that high intake of fruits and vegetables is associated with decreased risk of many types of cancers. Thus, it is widely accepted that diet changes are a powerful means to prevent cancer. Although there is a growing interest in the role of the tomato carotenoid lycopene in cancer prevention and treatment, we hypothesize that a single micronutrient cannot replace the power of the concerted action of multiple agents derived from a diet rich in fruits and vegetables. Indeed, we found that lycopene can synergize with other phytonutrients in the inhibition of cancer cell growth. The mechanism underlying the inhibitory effects of lycopene and other carotenoids involves interference in several pathways related to cancer cell proliferation and includes changes in the expression of many proteins participating in these processes, such as connexins, cyclins, cyclin-dependent kinases, and their inhibitors. These changes in protein expression suggest that the initial effect involves modulation of transcription by ligand-activated nuclear receptors or by other transcription factors. It is feasible to suggest that carotenoids and their oxidized derivatives interact with a network of transcription systems that are activated by different ligands at low affinity and specificity and that this activation leads to the synergistic inhibition of cell growth.

Field of study: Chemistry
Effects of In and Ni Addition on Microstructure of Sn-58Bi
Solder Joint

In this study, the effect of adding 0.5 wt.% and 1 wt.% In and Ni to Sn-58Bi solder on intermetallic compound (IMC) layers at the interface and the microstructure of the solder alloys were investigated during reflow and thermal aging by scanning electron microscopy and electron probe micro-analysis. The results showed that the addition of minor elements was not effective in suppressing the IMC growth during the reflow; however, the addition of 0.5 wt.% In and Ni was effective in suppressing the IMC layer growth during thermal aging. The thickening kinetics of the total IMC layer was analyzed by plotting the mean thickness versus the aging time on log–log coordinates, and the results showed the transition point from grain boundary diffusion control to a volume diffusion control mechanism. The results also showed that the minor addition of In can significantly suppress the coarsening of the Bi phase.

Field of study: Materials science
Varying temporal placement of an added stimulus in a fixed-interval schedule.

One paradigm for exploring stimulus effects on behavior is defined for steady state experiments. The paradigm is illustrated by a 60-sec fixed-interval reinforcement schedule wherein a 6-sec light is introduced into each interval. The temporal relation of this stimulus to the reinforcer is the independent variable that is systematically explored. Two experiments studied this temporal relation under two parametric conditions: (a) when the 6-sec light occurs once in each 60-sec interval, (b) when the 6-sec light occurs twice in each interval, the second time always during the 6 sec immediately preceding the reinforcer. Functions are presented showing the effect of the 6-sec light on responding at all points in the fixed-interval.

Field of study: Biology, Psychology