nils-herrmann/clean_scirepeval huggingface dataset:
Sensory Trap as the Mechanism of Sexual Selection in a Damselfly Genitalic Trait (Insecta: Calopterygidae)
Venue: The American Naturalist

During copulation, males of some calopterygid damselfly species displace the sperm stored in the spermatheca: the male genital appendages enter into the spermathecal ducts and physically remove sperm. In Calopteryx haemorrhoidalis, the genital appendages are too wide to penetrate the spermathecae, but males use a different mechanism in which the aedeagus stimulates the vaginal sensilla that control spermathecal sperm release. Since these sensilla are used during egg fertilization and oviposition, it was hypothesized that this function evolved before the male stimulatory ability. I investigated this using Hetaerina cruentata, a species whose position in the Calopterygidae phylogeny is more basal than Calopteryx. Given this position and having determined that males of this species are not able to displace sperm of their conspecific females during copulation, it was expected that H. cruentata females would eject sperm when stimulated with the aedeagi of C. haemorrhoidalis but not when stimulated with the aedeagi of their conspecifics. This prediction was confirmed. In order to investigate the widespread nature of this result, some other Calopteryx species—Calopteryx xanthostoma and Calopteryx virgo—were investigated. The results were similar to those of H. cruentata: conspecific males were unable to stimulate their females, but females ejected sperm when stimulated with C. haemorrhoidalis aedeagi. Morphometric analysis suggests that the mechanistic explanation for the stimulatory ability of C. haemorrhoidalis genitalia is that the aedeagal region that makes contact with the vaginal sensilla is wider in C. haemorrhoidalis than in the other species. These results suggest that the sensory “bias” shown and shared by H. cruentata, Calopteryx splendens, C. virgo, and C. haemorrhoidalis females represents an ancestral condition and that the male stimulatory ability is absent in the evolutionary history of the clade. These pieces of evidence as well as another one presented elsewhere, which indicates that C. haemorrhoidalis males vary in their stimulatory ability, constitute the three criteria for a case of sexual selection via exploitation of a female sensory bias. These results also provide support to the sensory trap hypothesis that indicates that the female bias—in this case, egg fertilization and oviposition—evolved in a context different from sexual selection. Considering that the male genital appendages responsible for physically removing spermathecal sperm in other calopterygids are present in C. haemorrhoidalis, I suggest that males were once able to displace spermathecal sperm physically. Such ability may have been later impeded by a reduction in size of the spermathecal ducts. Possibly, one of the latest events in this sequence is the male’s stimulatory ability. This hypothetical series of events suggests a coevolutionary scenario in which the central actor is the sperm stored in the spermathecae.
Coordinated Movements Prevent Jamming in an Emperor Penguin Huddle
Venue: PLOS ONE

For Emperor penguins (Aptenodytes forsteri), huddling is the key to survival during the Antarctic winter. Penguins in a huddle are packed so tightly that individual movements become impossible, reminiscent of a jamming transition in compacted colloids. It is crucial, however, that the huddle structure is continuously reorganized to give each penguin a chance to spend sufficient time inside the huddle, compared with time spent on the periphery. Here we show that Emperor penguins move collectively in a highly coordinated manner to ensure mobility while at the same time keeping the huddle packed. Every 30–60 seconds, all penguins make small steps that travel as a wave through the entire huddle. Over time, these small movements lead to large-scale reorganization of the huddle. Our data show that the dynamics of penguin huddling is governed by intermittency and approach to kinetic arrest in striking analogy with inert non-equilibrium systems, including soft glasses and colloids.
Carotenoids need structural colours to shine
Venue: Biology Letters

The bright colours of feathers are among the most striking displays in nature and are frequently used as sexual signals. Feathers can be coloured by pigments or by ordered tissue, and these mechanisms have traditionally been treated as distinct modes of display. Here we show that some yellow plumage colour is created both by reflection of light from white structural tissue and absorption of light by carotenoids. Thus, structural components of feathers contribute substantially to yellow ‘carotenoid’ displays, but the effect of variation in structural components on variation in colour displays is, to our knowledge, unstudied. The presence of structural colour in some carotenoid-based colour displays will have to be considered in studies of colour signalling.
Leading-edge tubercles delay stall on humpback whale (Megaptera novaeangliae) flippers
Venue: Physics of Fluids

The humpback whale (Megaptera novaeangliae) is exceptional among the baleen whales in its ability to undertake acrobatic underwater maneuvers to catch prey. In order to execute these banking and turning maneuvers, humpback whales utilize extremely mobile flippers. The humpback whale flipper is unique because of the presence of large protuberances or tubercles located on the leading edge which gives this surface a scalloped appearance. We show, through wind tunnel measurements, that the addition of leading-edge tubercles to a scale model of an idealized humpback whale flipper delays the stall angle by approximately 40%, while increasing lift and decreasing drag.
Running in ostriches (Struthio camelus): three-dimensional joint axes alignment and joint kinematics
Venue: The Journal of Experimental Biology

Although locomotor kinematics in walking and running birds have been examined in studies exploring many biological aspects of bipedalism, these studies have been largely limited to two-dimensional analyses. Incorporating a five-segment, 17 degree-of-freedom (d.f.) kinematic model of the ostrich hind limb developed from anatomical specimens, we quantified the three-dimensional (3-D) joint axis alignment and joint kinematics during running (at ∼3.3 m s–1) in the largest avian biped, the ostrich. Our analysis revealed that the majority of the segment motion during running in the ostrich occurs in flexion/extension. Importantly, however, the alignment of the average flexion/extension helical axes of the knee and ankle are rotated externally to the direction of travel (37° and 21°, respectively) so that pure flexion and extension at the knee will act to adduct and adbuct the tibiotarsus relative to the plane of movement, and pure flexion and extension at the ankle will act to abduct and adduct the tarsometatarsus relative to the plane of movement. This feature of the limb anatomy appears to provide the major lateral (non-sagittal) displacement of the lower limb necessary for steering the swinging limb clear of the stance limb and replaces what would otherwise require greater adduction/abduction and/or internal/external rotation, allowing for less complex joints, musculoskeletal geometry and neuromuscular control. Significant rotation about the joints' non-flexion/extension axes nevertheless occurs over the running stride. In particular, hip abduction and knee internal/external and varus/valgus motion may further facilitate limb clearance during the swing phase, and substantial non-flexion/extension movement at the knee is also observed during stance. Measurement of 3-D segment and joint motion in birds will be aided by the use of functionally determined axes of rotation rather than assumed axes, proving important when interpreting the biomechanics and motor control of avian bipedalism.
Biomimetics of campaniform sensilla: Measuring strain from the deformation of holes
Venue: Journal of Bionic Engineering

We present a bio-inspired strategy for designing embedded strain sensors in space structures. In insects, the campaniform sensillum is a hole extending through the cuticle arranged such that its shape changes in response to loads. The shape change is rotated through 90° by the suspension of a bell-shaped cap whose deflection is detected by a cell beneath the cuticle. It can be sensitive to displacements of the order of 1 nm. The essential morphology, a hole formed in a plate of fibrous composite material, was modelled by Skordos et al. who showed that global deformation of the plate (which can be flat, curved or a tube) induces higher local deformation of the hole due to its locally higher compliance. Further developments reported here show that this approach can be applied to groups of holes relative to their orientation.The morphology of the sensillum in insects suggests that greater sensitivity can be achieved by arranging several holes in a regular pattern; that if the hole is oval it can be “aimed” to sense specific strain directions; and that either by controlling the shape of the hole or its relationship with other holes it can have a tuned response to dynamic strains.We investigate space applications in which novel bio-inspired strain sensors could successfully be used.
Three-dimensional flow and lift characteristics of a hovering ruby-throated hummingbird
Venue: Journal of the Royal Society Interface

A three-dimensional computational fluid dynamics simulation is performed for a ruby-throated hummingbird (Archilochus colubris) in hovering flight. Realistic wing kinematics are adopted in the numerical model by reconstructing the wing motion from high-speed imaging data of the bird. Lift history and the three-dimensional flow pattern around the wing in full stroke cycles are captured in the simulation. Significant asymmetry is observed for lift production within a stroke cycle. In particular, the downstroke generates about 2.5 times as much vertical force as the upstroke, a result that confirms the estimate based on the measurement of the circulation in a previous experimental study. Associated with lift production is the similar power imbalance between the two half strokes. Further analysis shows that in addition to the angle of attack, wing velocity and surface area, drag-based force and wing–wake interaction also contribute significantly to the lift asymmetry. Though the wing–wake interaction could be beneficial for lift enhancement, the isolated stroke simulation shows that this benefit is buried by other opposing effects, e.g. presence of downwash. The leading-edge vortex is stable during the downstroke but may shed during the upstroke. Finally, the full-body simulation result shows that the effects of wing–wing interaction and wing–body interaction are small.
Algal ice-binding proteins change the structure of sea ice
Venue: Proceedings of the National Academy of Sciences of the United States of America

Krembs et al. (1) reported that extracellular polymeric substances (EPS) produced by a sea ice diatom, Melosira, created convoluted ice-pore morphologies in sea ice, potentially increasing its habitability and primary productivity. The activity was reduced by heat treatment and glycosidase treatments, suggesting that a glycoprotein was involved. Based on our previous work (2), it is very likely that the active substance is an ice-binding protein (IBP).
Hydraulic leg extension is not necessarily the main drive in large spiders
Venue: The Journal of Experimental Biology

Unlike most other arthropods, spiders have no extensor muscles in major leg joints. Therefore, hydraulic pressure generated in the prosoma provides leg extension. For decades, this mechanism was held responsible for the generation of the majority of the ground reaction forces, particularly in the hind legs. During propulsion, the front leg pairs must shorten whereas the hind legs have to be extended. Assuming that hind legs are essentially driven by hydraulics, their force vectors must pass the leg joints ventrally. However, at least in accelerated escape manoeuvres, we show here for the large cursorial spider species Ancylometes concolor that these force vectors, when projected into the leg plane, pass all leg joints dorsally. This indicates a reduced impact of the hydraulic mechanism on the generation of ground reaction forces. Although hydraulic leg extension still modulates their direction, the observed steep force vectors at the hind legs indicate a strong activity of flexors in the proximal joint complex that push the legs against the substrate. Consequently, the muscular mechanisms are dominant at least in the hind legs of large spiders.
Hydrodynamics of sailing of the Portuguese man-of-war Physalia physalis
Venue: Journal of the Royal Society Interface

Physalia physalis, commonly known as the Portuguese man-of-war (PMW), is a peculiar looking colony of specialized polyps. The most conspicuous members of this colony are the gas-filled sail-like float and the long tentacles, budding asymmetrically beneath the float. This study addresses the sailing of the PMW, and, in particular, the hydrodynamics of its trailing tentacles, the interaction between the tentacles and the float and the actual sailing performance. This paper attempts to provide answers for two of the many open questions concerning P. physalis: why does it need a sail? and how does it harness the sail?
Striking of underwater prey by a reef heron,Egretta gularis schistacea
Venue: Journal of Comparative Physiology A-neuroethology Sensory Neural and Behavioral Physiology

SummaryThe ability of a piscivorous bird, the western reef heron,Egretta gularis schistacea, to cope with light refraction at the air/water interface was investigated. The heron's capture rate of small stationary underwater prey from a variety of angles was high, indicating an ability to correct for refraction. Two distinct phases were described during head movement: i) ‘Pre-strike’ (mean path angle 60° to the vertical, mean velocity 52 cm/s). ii) ‘Strike’ (mean path angle 33°, mean velocity 270 cm/s). When prey was unsubmerged the two phases were less distinct (‘pre-strike’ 47°, 62 cm/s; ‘strike’ 42°, 154 cm/s). The point of change between phases (STR) was assumed to be the point at which corrections for refraction were performed. Calculated disparities between real and apparent prey positions at STR may reach 10 cm. At STR, highly significant correlations were found between i) the heron's eye height above the water, and prey depth, ii) the apparent prey depth and real prey depth. A model is presented to explain the heron's manner of correcting for light refraction.
Periodical Cicadas as Resource Pulses in North American Forests
Venue: Science

Resource pulses are occasional events of ephemeral resource superabundance that occur in many ecosystems. Aboveground consumers in diverse communities often respond strongly to resource pulses, but few studies have investigated the belowground consequences of resource pulses in natural ecosystems. This study shows that resource pulses of 17-year periodical cicadas (Magicicada spp.) directly increase microbial biomass and nitrogen availability in forest soils, with indirect effects on growth and reproduction in forest plants. These findings suggest that pulses of periodical cicadas create “bottom-up cascades,” resulting in strong and reciprocal links between the aboveground and belowground components of a North American forest ecosystem.
The insect exoskeleton: A natural structural composite
Venue: JOM

Through untold centuries of evolutionary development, the insect exoskeleton has become a highly optimized structure suited to a variety of demanding duties. Microscopic examination of the bessbeetle cuticle indicates that it is a composite consisting of layered plies having fiber orientations that alternate in a dual helicoidal pattern. Further, the geometry and size of the reinforcing fibers varies with the position of the ply. Several interesting structures discovered in the insect exoskeleton may provide fodder for new ideas on composite joining, ply orientation and fiber size and geometry.
Natural light harvesting: principles and environmental trends
Venue: Energy and Environmental Science

Light harvesting in photosynthetic organisms is largely an efficient process. The first steps of the light phase of photosynthesis, capture of light quanta and primary charge separation processes are particularly well-tuned. In plants, these primary events that take place within the photosystems possess remarkable quantum efficiency, reaching 80% and 100% in photosystems II and I respectively. This paper presents a view on the organisation of a natural light harvesting machine—the antenna of the photosystem II of higher plants. It explains the key principles of biological antenna design and the strategies of adaptation to light environment which have evolved over millions of years. This article argues that the high efficiency of the light harvesting antenna and its control are intimately interconnected owing to the molecular design of the pigment–proteins it is built of, enabling high pigment density combined with the long excited-state lifetime. The protein plays the role of a programmed solvent, accommodating high quantities of pigments, while ensuring their orientations and interaction yields are optimised to efficiently transfer energy to the reaction centres, simultaneously avoiding energy losses due to concentration quenching. The minor group of pigments, the xanthophylls, play a central role in the regulation of light harvesting, defining the antenna efficiency and thus its abilities to simultaneously provide energy to photosystem II and protect itself from excess light damage. Xanthophyll hydrophobicity was found to be a key factor controlling chlorophyll efficiency by modulating pigment–pigment and pigment–protein interactions. Xanthophylls also endow the light harvesting antenna with the remarkable ability to memorise photosystem II light exposure—a light counter principle. Indeed, this type of light harvesting regulation displays hysteretic behaviour, typically observed during electromagnetic induction of ferromagnetic materials, the polarization of ferroelectric materials and the deformation of semi-elastic materials. The photosynthetic antenna is thus a magnificent example of how nature utilises the principles of physics to achieve its goal—extremely efficient, robust, autonomic and yet flexible light harvesting.
Colourful parrot feathers resist bacterial degradation
Venue: Biology Letters

The brilliant red, orange and yellow colours of parrot feathers are the product of psittacofulvins, which are synthetic pigments known only from parrots. Recent evidence suggests that some pigments in bird feathers function not just as colour generators, but also preserve plumage integrity by increasing the resistance of feather keratin to bacterial degradation. We exposed a variety of colourful parrot feathers to feather-degrading Bacillus licheniformis and found that feathers with red psittacofulvins degraded at about the same rate as those with melanin and more slowly than white feathers, which lack pigments. Blue feathers, in which colour is based on the microstructural arrangement of keratin, air and melanin granules, and green feathers, which combine structural blue with yellow psittacofulvins, degraded at a rate similar to that of red and black feathers. These differences in resistance to bacterial degradation of differently coloured feathers suggest that colour patterns within the Psittaciformes may have evolved to resist bacterial degradation, in addition to their role in communication and camouflage.
Fish mucous cocoons: the ‘mosquito nets’ of the sea
Venue: Biology Letters

Mucus performs numerous protective functions in vertebrates, and in fishes may defend them against harmful organisms, although often the evidence is contradictory. The function of the mucous cocoons that many parrotfishes and wrasses sleep in, while long used as a classical example of antipredator behaviour, remains unresolved. Ectoparasitic gnathiid isopods (Gnathiidae), which feed on the blood of fish, are removed by cleaner fish during the day; however, it is unclear how parrotfish and wrasse avoid gnathiid attacks at night. To test the novel hypothesis that mucous cocoons protect against gnathiids, we exposed the coral reef parrotfish Chlorurus sordidus (Scaridae) with and without cocoons to gnathiids overnight and measured the energetic content of cocoons. Fish without mucous cocoons were attacked more by gnathiids than fish with cocoons. The energetic content of mucous cocoons was estimated as 2.5 per cent of the fish's daily energy budget fish. Therefore, mucous cocoons protected against attacks by gnathiids, acting like mosquito nets in humans, a function of cocoons and an efficient physiological adaptation for preventing parasite infestation that is not used by any other animal.
Arbuscular mycorrhizal symbiosis modulates antioxidant response in salt-stressed Trigonella foenum-graecum plants
Venue: Mycorrhiza

An experiment was conducted to evaluate the influence of Glomus intraradices colonization on the activity of antioxidant enzymes [superoxide dismutase (SOD), catalase (CAT), peroxidase (PX), ascorbate peroxidase (APX), and glutathione reductase (GR)] and the accumulation of nonenzymatic antioxidants (ascorbic acid, α-tocopherol, glutathione, and carotenoids) in roots and leaves of fenugreek plants subjected to varying degrees of salinity (0, 50, 100, and 200 mM NaCl) at two time intervals (1 and 14 days after saline treatment, DAT). The antioxidative capacity was correlated with oxidative damage in the same tissue. Under salt stress, lipid peroxidation and H2O2 concentration increased with increasing severity and duration of salt stress (DoS). However, the extent of oxidative damage in mycorrhizal plants was less compared to nonmycorrhizal plants. The study reveals that mycorrhiza-mediated attenuation of oxidative stress in fenugreek plants is due to enhanced activity of antioxidant enzymes and higher concentrations of antioxidant molecules. However, the significant effect of G. intraradices colonization on individual antioxidant molecules and enzymes varied with plant tissue, salinity level, and DoS. The significant effect of G. intraradices colonization on antioxidative enzymes was more evident at 1DAT in both leaves and roots, while the concentrations of antioxidant molecules were significantly influenced at 14DAT. It is proposed that AM symbiosis can improve antioxidative defense systems of plants through higher SOD activity in M plants, facilitating rapid dismutation of O2- to H2O2, and subsequent prevention of H2O2 build-up by higher activities of CAT, APX, and PX. The potential of G. intraradices to ameliorate oxidative stress generated in fenugreek plants by salinity was more evident at higher intensities of salt stress.
Food and Feeding Ecology of Puffins
Venue: Bird Study

This study shows that although annual fluctuations occur in the main prey types of Skomer Puffins, food availability does not appear to limit breeding success. Most birds found food close to the colony, showing peaks of activity early in the day and again in late afternoon; and two out of four experimental pairs were able to rear 'twins', though the growth-rates of these were less than for single chicks. Some interesting observations are given on the feeding of the chick and on kleptoparasitism of adults by Jackdaws and gulls.