nils-herrmann/clean_scirepeval huggingface dataset:
Development of a clinically adoptable joint coordinate system for the wrist.
Venue: Journal of biomechanics

Kinematics play a vital role in answering both clinical and research questions regarding joint biomechanics. Standardisation of kinematic approaches is important; however, the method that is currently recommended for building the joint coordinate system (JCS) to measure kinematics of the wrist is difficult to implement in vivo. In this study, a series of JCSs were examined and compared to the International Society of Biomechanics (ISB) recommendations in terms of landmark digitisation repeatability, coordinate frame creation repeatability, and secondary rotations during planar motion. No differences were found between the ISB JCS and 338 of 408 of the JCSs proposed in the study, meaning that the proposed alternative can be used without affecting the measured joint angles or repeatability of the JCS. Forearm frames that used a vector between the epicondyles to define the YZ plane of the forearm were found to create JCSs that produced secondary rotations greater than that which would be clinically detectable and thus, they should be avoided when defining a JCS. The remaining 338 coordinate systems can be used interchangeably; consequently, should there be any clinical limitations that result in missing landmarks, alternative coordinate systems can be used. A joint coordinate system created using the radial styloid, ulnar styloid, medial epicondyle, lateral epicondyle, the heads of the second and fifth metacarpal, and the base of the third metacarpal is recommended for quantifying kinematics in vivo.
Bone cement augmentation of femoral nail head elements increases their cut-out resistance in poor bone quality- A biomechanical study.
Venue: Journal of biomechanics

The aim of this study was to analyze biomechanically the impact of bone cement augmentation on the fixation strength and cut-out resistance of Proximal Femoral Nail Antirotation (PFNA) and Trochanteric Fixation Nail Advanced (TFNA) head elements within the femoral head in a human cadaveric model with poor bone quality.  Fifteen pairs of fresh-frozen human cadaveric femoral heads were randomized to three sets of five pairs each for center-center implantation of either TFNA blade, TFNA screw, or PFNA blade. By splitting the specimens of each pair for treatment with or without bone cement augmentation, six study groups were created. All specimens were biomechanically tested under progressively increasing cyclic loading featuring a physiologic loading trajectory in a setup simulating a reduced intertrochanteric fracture with lack of posteromedial support. Number of cycles to 5° varus collapse was evaluated together with the corresponding load at failure.  Compared to the non-augmented state, all types of implants demonstrated significantly higher numbers of cycles to failure and load at failure following augmentation, p ≤ 0.03. Augmented TFNA blades resulted in highest numbers of cycles to failure and loads at failure (30492; 4049 N) followed by augmented PFNA blades (30033; 4003 N) and augmented TFNA screws (19307; 2930 N), p = 0.11.  TFNA screws showed similar numbers of cycles to failure and loads at failure compared to both non-augmented TFNA and PFNA blades, P = 0.98. From a biomechanical perspective, bone cement augmentation significantly increases the cut-out resistance of instrumented TFNA and PFNA head elements and is a valid supplementary treatment option to these nailing procedures in poor bone quality.
Kinematic biomarkers of chronic neck pain measured during gait: A data-driven classification approach.
Venue: Journal of biomechanics

People with chronic neck pain (CNP) often present with altered gait kinematics. This paper investigates, combines, and compares the kinematic features from linear and nonlinear walking trajectories to design supervised machine learning models which differentiate asymptomatic individuals from those with CNP. For this, 126 features were extracted from seven body segments of 20 asymptomatic subjects and 20 individuals with non-specific CNP. Neighbourhood Component Analysis (NCA) was used to identify body segments and the corresponding significant features which have the maximum discriminative power for conducting classification. We assessed the efficacy of NCA combined with K- Nearest Neighbour (K-NN), Support Vector Machine and Linear Discriminant Analysis. By applying NCA, all classifiers increased their performance for both linear and nonlinear walking trajectories. Notably, features selected by NCA which magnify the classification power of the computational model were solely from the head, trunk and pelvis kinematics. Our results revealed that the nonlinear trajectory provides the best classification performance through the NCA-K-NN algorithms with an accuracy of 90%, specificity of 100% and sensitivity of 83.3%. The selected features by NCA are introduced as key biomarkers of gait kinematics for classifying non-specific CNP. This paper provides insight into changes in gait kinematics which are present in people with non-specific CNP which can be exploited for classification purposes. The result highlights the importance of curvilinear gait kinematic features which potentially could be utilized in future research to predict recurrent episodes of neck pain.
Experimental study on the effect of flow in microfluidic channel on bovine sperm navigation.
Venue: Journal of biomechanics

The navigation mechanism of mammalian sperm in the female reproductive tract is unclear owing to its complex process. This study performed an in vitro experiment using the microfluidic channel with two reservoirs to investigate the effect of fluid flow on the swimming properties of the bovine sperm. The width and height of the manufactured channel were 200 and 20 μm, respectively. The flow in the microchannel occurs because of the hydraulic head difference between the two reservoirs. Sperm with positive rheotaxis proceed in the opposite direction of the flow in the channel after swimming up the downstream reservoir. This study focused on the effect of the flow in the microfluidic channel on sperm motility. It was observed that sperm mostly moved along the channel wall and accumulated near the wall away from the downstream reservoir. The existence of fluid flow in the channel brought about an increase in the ratio of the sperm with positive rheotaxis. Furthermore, the experimental results indicated that the motility of sperm swimming against the flow along the wall increased away from the downstream reservoir. These results will provide useful information to understand the mechanism of sperm navigation for in vivo fertilization.
Generating waist area-dependent ground reaction forces for long-duration spaceflight.
Venue: Journal of biomechanics

Prolonged microgravity exposure greatly weakens the bones and muscles of astronauts. This is a critical biomechanical issue for astronauts as they may be more prone to bone fractures. To combat this issue, lower body negative pressure (LBNP) is a concept that generates artificial gravitational forces that may help strengthen bones and muscles during long-term spaceflight. Negative pressure, defined as below ambient pressure, is applied within a chamber that encompasses the lower half of the body. By increasing the negative pressure, more ground reaction forces (GRFs) are generated beneath the subject's feet. We hypothesize that increasing the cross-sectional area (CSA) of the subject's waist will generate greater GRFs beneath the subject's feet. Six healthy subjects volunteered to participate under two different experimental conditions: 1) original CSA of their waist and 2) larger CSA of their waist. In both conditions the subjects were suspended in a supine position (simulated microgravity) along with a weight scale beneath their feet. Negative pressures ranged from zero to 50 mmHg, increasing in increments of 5 mmHg. At -50 mmHg, original CSAs generated 1.18 ± 0.31 (mean ± SD) of their normal bodyweight. Subjects generated about one bodyweight at -45 mmHg using their original waist CSA. At -50 mmHg, larger CSAs generated 1.46 ± 0.31 of their normal bodyweight. Subjects generated about one bodyweight at -35 mmHg using their larger waist CSA. These data support our hypothesis. This novel technique may apply less stress to the cardiovascular system and conserve power for exercise in the spacecraft.
Mechanical advantage and joint function of the lower limb during hopping at different frequencies.
Venue: Journal of biomechanics

Mechanical output at a joint level could be influenced by its leverage characteristics and by its functional behaviour and both could change to accommodate the demands of a given locomotor task. In this study, the mechanical power generated at the knee and ankle joints and their functional indexes (i.e. damper, strut, spring and motor like-function) were calculated by using 3D kinematic and kinetic data during hopping at 2, 2.5, 3 and 3.5 Hz. The effective mechanical advantage (i.e. the ratio between internal and external moment arm) of the knee (EMAK) and ankle (EMAA) and joint stiffness were calculated as well. Joint stiffness increased with frequency whereas positive and negative joint power decreased with it, the ankle power values being always larger (20-50%) than those at the knee. EMAA reached its highest value (0.4) during the propulsive phase at 3 Hz whereas no significant changes in EMAK were observed as a function of frequency in both the absorption and propulsive phases. Knee joint-functional index shifted from a spring to a strut-like function with increasing frequency (from 56 to 8% and from 4 to 51%, respectively) while the ankle operated mainly as a spring (from 90 to 53%), its damper and motor-like indexes being negligible at all frequencies (<5%). Therefore, in hopping, the knee works to dissipate mechanical energy (the combination of its damper and strut indexes increase from 23 to 72% at these frequencies) and the primary source of mechanical power is attributable to the elastic function of the ankle.
Trunk-pelvic coordination during unstable sitting with varying task demand: A methodological study.
Venue: Journal of biomechanics

Unstable sitting is used commonly to evaluate trunk postural control (TPC), typically via measures based on center-of-pressure (CoP) time series. However, these measures do not directly reflect underlying control/movement strategies. We quantified trunk-pelvis coordination during unstable sitting using vector coding (VC) and correlated such coordination with CoP-based outcomes across varying task demands. Thirteen uninjured individuals (11 male/2 female) sat on an unstable chair at four instability levels, in a random order, defined relative to the individual gravitational gradient (∇G): 100, 75, 60, and 45%∇G. VC assessed trunk-pelvic coordination, and coupling angles classified movements as: 1) anti-phase, 2) in-phase, 3) trunk-phase, or 4) pelvic-phase. With decreasing %∇G (i.e., increasing instability), we found: increased anti-phase movement in the sagittal and frontal planes; decreased in-phase movement in the sagittal and frontal planes; and increased in-phase and pelvic-phase movement in the transverse plane. In the sagittal and frontal planes, we observed significant weak-to-moderate correlations between anti-phase and in-phase movements (0.288 < |ρ| < 0.549). Correlations between CoP-based measures and pelvic-phase and trunk-phase movements were typically weak and/or non-significant (|ρ| < 0.318). VC techniques discriminated between levels of instability during unstable sitting, identifying in-phase coordination (stiffening strategy) at lower instability levels and anti-phase coordination at higher instability levels. Compared to CoP-based measures, trunk coordination outcomes during unstable sitting provide measures of TPC that more directly quantify underlying movement strategies. These results can also serve as a baseline for future work investigating populations with impaired TPC (e.g., individuals with low back pain or limb loss).
Does stroke-induced sensorimotor impairment and perturbation intensity affect gait-slip outcomes?
Venue: Journal of biomechanics

People with chronic stroke (PwCS) demonstrate similar gait-slip fall-risk on both paretic and non-paretic side. Compensatory stepping and slipping limb control are crucial to reduce gait-slip fall-risk. Given the unpredictable intensities of real-life perturbations, this study aimed to determine whether recovery from paretic or non-paretic slips vary as a function of perturbation intensity among PwCS. Forty-four PwCS were assigned to non-paretic low intensity slip, non-paretic high intensity slip, paretic low intensity slip, or paretic high intensity slip group. Participants were subjected to a novel overground gait-slip with a distance of 24 cm (low) or 45 cm (high), under either limb. Recovery strategies, center of mass (CoM) state stability and slipping kinematics were analyzed. Both non-paretic high and low intensity groups demonstrated similar percentage of aborted and recovery stepping, however, paretic high intensity group demonstrated greater aborted stepping (p > 0.05). Both high and low intensity paretic slip groups demonstrated reduced post-slip CoM stability relative to the non-paretic slip groups (p < 0.05). Slip displacement was greater in paretic high group compared with non-paretic high group (p < 0.05). Greater slip displacement at higher intensity was noted only in paretic slip group (p < 0.05). The slip velocity was faster in paretic groups compared to non-paretic slip groups (p < 0.05). Paretic slips showed lower stability at both intensities associated with difficulty in modulating slipping kinematics and resorting to an increased aborted stepping strategy compared to non-paretic slip. These findings are suggestive of developing balance interventions for improving both compensatory non-paretic limb stepping and reactive control of slipping paretic limb for fall-risk reduction.
Computational evaluation of rebreathing and effective dead space on a helmet-like interface during the COVID-19 pandemic
Venue: Journal of Biomechanics

The coronavirus disease 2019 (COVID-19) is a potentially severe acute respiratory infection caused by severe acute respiratory syndrome coronavirus 2. The potential for transmission of this disease has led to an important scarcity of health-care resources. Consequently, alternative solutions have been explored by many physicians and researchers. Non-invasive Ventilation has been revealed as one alternative for patients with associated acute respiratory distress syndrome. This technique is being used in combination with helmet-like interfaces because of their versatility and affordability. However, these interfaces could experience important problems of 
                        
                           
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                      rebreathing, especially under low flow rate conditions. This work proposes a Computational Fluid Dynamics method to accurately characterize the fluid flow in a pre-design environment of helmet-like interfaces. Parameters as effective dead space, rebreathing, pressure, or temperature field distribution are quantified and analysed in detail in order to study the performance and feasibility of such devices to relieve the effects of respiratory infections.
A computational study of fatigue resistance of nitinol stents subjected to walk-induced femoropopliteal artery motion.
Venue: Journal of biomechanics

Fatigue resistance of nitinol stents implanted in femoropopliteal arteries is a critical issue because of their harsh biomechanical environment. Limb flexions due to daily walk expose the femoropopliteal arteries and, subsequently, the implanted stents to large cyclic deformations, which may lead to fatigue failure of the smart self-expandable stents. For the first time, this paper utilised the up-to-date measurements of walk-induced motion of a human femoropopliteal artery to investigate the fatigue behaviour of nitinol stent after implantation. The study was carried out by modelling the processes of angioplasty, stent crimping, self-expansion and deformation under diastolic-systolic blood pressure, repetitive bending, torsion and axial compression as well as their combination. The highest risk of fatigue failure of the nitinol stent occurs under a combined loading condition, with the bending contributing the most, followed by compression and torsion. The pulsatile blood pressure alone hardly causes any fatigue failure of the stent. The work is significant for understanding and improving the fatigue performance of nitinol stents through innovative design and procedural optimisation.
Decreased stress shielding with a PEEK femoral total knee prosthesis measured in validated computational models.
Venue: Journal of biomechanics

Due to their high stiffness, metal femoral implants in total knee arthroplasty may cause stress shielding of the peri-prosthetic bone, which can lead to loss of bone stock. Using a polymer (PEEK) femoral implant reduces the stiffness mismatch between implant and bone, and therefore has the potential to decrease strain shielding. The goal of the current study was to evaluate this potential benefit of PEEK femoral components in cadaveric experiments. Cadaveric femurs were loaded in a materials testing device, while a 3-D digital image correlation set-up captured strains on the surface of the intact femurs and femurs implanted with PEEK and CoCr components. These experimental results were used to validate specimen-specific finite element models, which subsequently were used to assess the effect of metal and PEEK femoral components on the bone strain energy density. The finite element models showed strain maps that were highly comparable to the experimental measurements. The PEEK implant increased strain energy density, relative to the preoperative bone and compared to CoCr. This was most pronounced in the regions directly under the implant and near load contact sites. These data confirm the hypothesis that a PEEK femoral implant can reduce peri-prosthetic stress shielding.
Front crawl stroke in swimming: Phase durations and self-similarity.
Venue: Journal of biomechanics

Human movements, such as walking and running, are able to generate rhythmic motor patterns, with the consequent appearance of hidden time-harmonic structures. Such harmonic structures are represented (at comfortable speed) by the occurrence of the golden ratio as ratio of durations of specific walking and running gait sub-phases. Preliminary experimental evidences suggest that front crawl swimming may behave, under this point of view, like walking and running. This paper aims to demonstrate that a mathematical connection between the golden ratio and the front crawl swimming stroke actually exists, at a pace that plays the role of the comfortable speed in walking and running. Generalized Fibonacci sequences are used to this purpose. They rely on the durations of aggregate phases of the front crawl swimming stroke with a clear physical meaning, while characterizing self-similarity of front crawl strokes in its simple nature and enhanced (stronger) variant. Experimental data on front crawl swimmers illustrate the theoretical derivations, suggesting that the pace playing the role of the comfortable speed in walking and running is the middle/long-distance one, while showing that the self-similarity level increases with the swimming technique and the enhanced self-similarity is associated with the performance of top-level swimmers.
Increased Q-factor increases medial compartment knee joint contact force during cycling.
Venue: Journal of biomechanics

As Q-Factor (QF: inter-pedal distance) is increased, the internal knee abduction moment (KAbM) also increases, however it is unknown if this increased KAbM is associated with increased medial compartment knee joint contact force in cycling. In the absence of in vivo measurement, musculoskeletal modeling simulations may provide a viable option for estimating knee joint contact forces in cycling. The primary purpose of this study was to investigate the effect of increasing QF on knee joint total (TCF), and medial (MCF) compartment contact force during ergometer cycling. The secondary purpose was to evaluate whether KAbM and knee extension moment are accurate predictors of MCF in cycling. Musculoskeletal simulations were performed to estimate TCF and MCF for sixteen participants cycling at an original QF (150 mm), and wide QF (276 mm), at 80 W and 80 rotations per minute. Paired samples t-tests were used to detect differences between QF conditions. MCF increased significantly, however, TCF did not change at wide QF. Peak knee extensor muscle force did not change at wide QF. Peak knee flexor muscle force was significantly reduced with wide QF. Regression analyses showed KAbM and knee extension moments explained 87.4% of the variance in MCF when considered alongside QF. The increase of MCF may be attributed to increased frontal-plane pedal reaction force moment arm. Future research may seek to implement QF modulation as a part of rehabilitation or training procedures utilizing cycling in cases where medial compartment joint loading is of importance.
Interaction analysis of a pregnant female uterus and fetus in a vehicle passing a speed bump.
Venue: Journal of biomechanics

Pregnant vehicle occupants experience relatively large acceleration when the vehicle passes a speed-bump. In this paper, the effect of such sudden acceleration on a pregnant uterus is investigated. A biomechanical model representing the fundamental dynamic behaviors of a pregnant uterus has been developed. The model relates to the 32nd week of gestation when the fetus is in head-down, occipito-anterior position. Considering the drag and squeeze effects of the amniotic fluid, we derive a comprehensive differential equation that represents the interaction of the uterus and fetus. Solving the governing equation, we obtain the system response to different speed-bump excitations. Using the fetal head injury criterion (HIC = 390), we evaluate the model response. Three risk zones (Low, Medium, and High) are introduced, and the effects of excitation characteristics on HIC are investigated. HIC enhances, sub-exponentially, as the excitation amplitude (width) increases (decreases). Three risk-bounds, corresponding to 25%, 75%, and 100% risk of injury, are developed in the "width-amplitude" and the "frequency-amplitude" planes. Considering a typical speed-bump of width and excitation amplitude of 0.5 m and 0.12 m, respectively, the driver should not hit the speed-bump at 42 km/h or more. We advise hitting such speed-bumps under 25 km/h, based on this paper's findings. According to the risk-bounds, the injury risk of an arbitrary speed-bump excitation, at any desired vehicle speed, can be determined. The findings can help to understand how a pregnant uterus and fetus are subjected to risk caused by a vehicle passing a speed-bump and to expand our knowledge to improve safety during pregnancy.