nils-herrmann/clean_scirepeval huggingface dataset:
Brown adipose tissue: physiological function and evolutionary significance
Venue: Journal of Comparative Physiology B

In modern eutherian (placental) mammals, brown adipose tissue (BAT) evolved as a specialized thermogenic organ that is responsible for adaptive non-shivering thermogenesis (NST). For NST, energy metabolism of BAT mitochondria is increased by activation of uncoupling protein 1 (UCP1), which dissipates the proton motive force as heat. Despite the presence of UCP1 orthologues prior to the divergence of teleost fish and mammalian lineages, UCP1’s significance for thermogenic adipose tissue emerged at later evolutionary stages. Recent studies on the presence of BAT in metatherians (marsupials) and eutherians of the afrotherian clade provide novel insights into the evolution of adaptive NST in mammals. In particular studies on the ‘protoendothermic’ lesser hedgehog tenrec (Afrotheria) suggest an evolutionary scenario linking BAT to the onset of eutherian endothermy. Here, we review the physiological function and distribution of BAT in an evolutionary context by focusing on the latest research on phylogenetically distinct species.
Male age and female mate choice in a synchronizing katydid
Venue: Journal of Comparative Physiology A

In acoustically communicating species, females often evaluate the frequency content, signal duration and the temporal signal pattern to gain information about the age of the signaller. This is different in the synchronizing bush cricket Mecopoda elongata where females select males on the basis of relative signal timing in duets. In a longitudinal approach, we recorded songs of M. elongata males produced 2 weeks (young male) and 9 weeks (old male) after their ultimate moult. Signal timing of both age categories was studied in acoustic interactions, and female preference was investigated in choice situations. Young male chirps were significantly shorter and contained less energy compared to “old chirps”. In mixed-age duets younger males timed their chirps as leader significantly more often. Females preferred the young male chirp when broadcast as leader over the old male chirp, but choice was random when the old male chirp was leader. This choice asymmetry was abolished after reducing the duration of the “old chirp”. Results were mirrored in response of a bilateral pair of auditory neurons, where the asymmetry in spike count and first-spike latency correlated with behaviour. We suggest that older males may compensate their disadvantage in a more complex chorus situation.
Hearing abilities and sound reception of broadband sounds in an adult Risso’s dolphin (Grampus griseus)
Venue: Journal of Comparative Physiology A

While odontocetes do not have an external pinna that guides sound to the middle ear, they are considered to receive sound through specialized regions of the head and lower jaw. Yet odontocetes differ in the shape of the lower jaw suggesting that hearing pathways may vary between species, potentially influencing hearing directionality and noise impacts. This work measured the audiogram and received sensitivity of a Risso’s dolphin (Grampus griseus) in an effort to comparatively examine how this species receives sound. Jaw hearing thresholds were lowest (most sensitive) at two locations along the anterior, midline region of the lower jaw (the lower jaw tip and anterior part of the throat). Responses were similarly low along a more posterior region of the lower mandible, considered the area of best hearing in bottlenose dolphins. Left- and right-side differences were also noted suggesting possible left–right asymmetries in sound reception or differences in ear sensitivities. The results indicate best hearing pathways may vary between the Risso’s dolphin and other odontocetes measured. This animal received sound well, supporting a proposed throat pathway. For Risso’s dolphins in particular, good ventral hearing would support their acoustic ecology by facilitating echo-detection from their proposed downward oriented echolocation beam.
Current techniques for high-resolution mapping of behavioral circuits in Drosophila
Venue: Journal of Comparative Physiology A

Understanding behavior requires unraveling the mysteries of neurons, glia, and their extensive connectivity. Drosophila has emerged as an excellent organism for studying the neural basis of behavior. This can be largely attributed to the extensive effort of the fly community to develop numerous sophisticated genetic tools for visualizing, mapping, and manipulating behavioral circuits. Here, we attempt to highlight some of the new reagents, techniques and approaches available for dissecting behavioral circuits in Drosophila. We focus on detailing intersectional strategies such as the Flippase-induced intersectional Gal80/Gal4 repression (FINGR), because of the tremendous potential they possess for mapping the minimal number of cells required for a particular behavior. The logic and strategies outlined in this review should have broad applications for other genetic model organisms.
Digesta retention patterns of solute and different-sized particles in camelids compared with ruminants and other foregut fermenters
Venue: Journal of Comparative Physiology B

The mean retention times (MRT) of solute or particles in the gastrointestinal tract and the forestomach (FS) are crucial determinants of digestive physiology in herbivores. Besides ruminants, camelids are the only herbivores that have evolved rumination as an obligatory physiological process consisting of repeated mastication of large food particles, which requires a particle sorting mechanism in the FS. Differences between camelids and ruminants have hardly been investigated so far. In this study we measured MRTs of solute and differently sized particles (2, 10, and 20 mm) and the ratio of large-to-small particle MRT, i.e. the selectivity factors (SF10/2mm, SF20/2mm, SF20/10mm), in three camelid species: alpacas (Vicugna pacos), llamas (Llama glama), and Bactrian camels (Camelus bactrianus). The camelid data were compared with literature data from ruminants and non-ruminant foregut fermenters (NRFF). Camelids and ruminants both had higher SF10/2mmFS than NRFF, suggesting convergence in the function of the FS sorting mechanism in contrast to NRFF, in which such a sorting mechanism is absent. The SF20/10mmFS did not differ between ruminants and camelids, indicating that there is a particle size threshold of about 1 cm in both suborders above which particle retention is not increased. Camelids did not differ from ruminants in MRT2mmFS, MRTsoluteFS, and the ratio MRT2mmFS/MRTsoluteFS, but they were more similar to ‘cattle-’ than to ‘moose-type’ ruminants. Camelids had higher SF10/2mmFS and higher SF20/2mmFS than ruminants, indicating a potentially slower particle sorting in camelids than in ruminants, with larger particles being retained longer in relation to small particles.
Rainbow smelt: the unusual case of cryoprotection by sustained glycerol production in an aquatic animal
Venue: Journal of Comparative Physiology B

Rainbow smelt flourish at −1.8 °C, the freezing point of sea water. An antifreeze protein contributes to freeze point depression but, more importantly, cryoprotection is due to an elevation in osmotic pressure, by the accumulation of glycerol. The lower the water temperature, the higher the plasma glycerol with levels recorded as high as 400 mmol l−1. Glycerol freely diffuses out in direct relation to the glycerol concentration and fish may lose as much as 15 % of their glycerol reserve per day. Glycerol levels decrease from a maximum in February/March while water temperature is still sub-zero. The decrease in glycerol may respond to a photoperiod signal as opposed to initiation which is triggered by low temperature. The initial increase in glycerol level is supported by liver glycogen but high sustained glycerol level is dependent upon dietary carbohydrate and protein. The metabolic pathways leading to glycerol involve flux from glycogen/glucose to the level of dihydroxyacetone phosphate (DHAP) via the initial part of glycolysis and from amino acids via a truncated gluconeogenesis again to the level of DHAP. DHAP in turn is converted to glycerol 3-phosphate (G3P) and then directly to glycerol. The key to directing DHAP to G3P is a highly active glycerol 3-P dehydrogenase. G3P is converted directly to glycerol via G3P phosphatase, the rate-limiting step in the process. The transition to glycerol production is associated with increased activities of enzymes at key loci in the top part of glycogenolysis/glycolysis. Curtailment of the final section of glycolysis may reside at the level of pyruvate oxidation with an inactivation of pyruvate dehydrogenase (PDH) driven by increased levels of PDH kinase. Enzymes associated with amino acid trafficking are elevated as is the pivotal enzyme phosphoenolpyruvate carboxykinase.
Stress physiology in marine mammals: how well do they fit the terrestrial model?
Venue: Journal of Comparative Physiology B

Stressors are commonly accepted as the causal factors, either internal or external, that evoke physiological responses to mediate the impact of the stressor. The majority of research on the physiological stress response, and costs incurred to an animal, has focused on terrestrial species. This review presents current knowledge on the physiology of the stress response in a lesser studied group of mammals, the marine mammals. Marine mammals are an artificial or pseudo grouping from a taxonomical perspective, as this group represents several distinct and diverse orders of mammals. However, they all are fully or semi-aquatic animals and have experienced selective pressures that have shaped their physiology in a manner that differs from terrestrial relatives. What these differences are and how they relate to the stress response is an efflorescent topic of study. The identification of the many facets of the stress response is critical to marine mammal management and conservation efforts. Anthropogenic stressors in marine ecosystems, including ocean noise, pollution, and fisheries interactions, are increasing and the dramatic responses of some marine mammals to these stressors have elevated concerns over the impact of human-related activities on a diverse group of animals that are difficult to monitor. This review covers the physiology of the stress response in marine mammals and places it in context of what is known from research on terrestrial mammals, particularly with respect to mediator activity that diverges from generalized terrestrial models. Challenges in conducting research on stress physiology in marine mammals are discussed and ways to overcome these challenges in the future are suggested.
Route-segment odometry and its interactions with global path-integration
Venue: Journal of Comparative Physiology A

Insects such as desert ants and honeybees use visual memories to travel along familiar routes between their nest and a food-site. We trained Cataglyphis fortis foragers along a two-segment route to investigate whether they encode the lengths of route segments over which visual cues remain approximately constant. Our results support earlier studies suggesting that such route-segment odometry exists, and allows an individual to stop using a visual route memory at an appropriate point, even in the absence of any change in the visual surroundings. But we find that the behavioural effects of route-segment odometry are often complicated by interactions with guidance from the global path-integration system. If route-segment odometry and path-integration agree, they act together to produce a precise signal for search. If the endpoint of route-segment odometry arrives first, it does not trigger search but its effect can persist and cause guidance by path-integration to end early. Conversely, if ants start with their path-integration state at zero, they follow a route memory for no more than 3 m, irrespective of the route-segment length. A possible explanation for these results is that if one guidance system is made to overshoot its endpoint, it can cause the other to be cut short.
Osmoregulatory adaptations of freshwater air-breathing snakehead fish (Channa striata) after exposure to brackish water
Venue: Journal of Comparative Physiology B

NaCl-rich rock salt dissolved in natural water source leads to salinity fluctuation that profoundly affects freshwater ecosystem and aquatic fauna. The snakehead (Channa striata) can live in saline water, but the osmoregulatory mechanisms underlying this ability remain unclear. Herein, we found that exposure to salinities ≥10 ‰ NaCl markedly elevated plasma cortisol and glucose levels, and caused muscle dehydration. In a study of time-dependent response after being transferred from fresh water (0 ‰ NaCl, FW) to salt-dissolved brackish water (10 ‰ NaCl, SW), FW–SW, cortisol increased rapidly along with elevations of plasma glucose and lactate. Interestingly, plasma cortisol returned to baseline after prolonged exposure, followed by a second peak that probably enhanced the branchial Na+/K+-ATPase activity. Under SW–FW condition, Na+/K+-ATPase activity was not altered as compared to SW-adapted fish. In conclusion, salinity change, especially FW–SW, induced a stress response and hence cortisol release in C. striata, which might increase plasma glucose and lactate to energize the branchial Na+/K+-ATPase.
How variation in head pitch could affect image matching algorithms for ant navigation
Venue: Journal of Comparative Physiology A

Desert ants are a model system for animal navigation, using visual memory to follow long routes across both sparse and cluttered environments. Most accounts of this behaviour assume retinotopic image matching, e.g. recovering heading direction by finding a minimum in the image difference function as the viewpoint rotates. But most models neglect the potential image distortion that could result from unstable head motion. We report that for ants running across a short section of natural substrate, the head pitch varies substantially: by over 20 degrees with no load; and 60 degrees when carrying a large food item. There is no evidence of head stabilisation. Using a realistic simulation of the ant’s visual world, we demonstrate that this range of head pitch significantly degrades image matching. The effect of pitch variation can be ameliorated by a memory bank of densely sampled along a route so that an image sufficiently similar in pitch and location is available for comparison. However, with large pitch disturbance, inappropriate memories sampled at distant locations are often recalled and navigation along a route can be adversely affected. Ignoring images obtained at extreme pitches, or averaging images over several pitches, does not significantly improve performance.
Unexpected dynamic up-tuning of auditory organs in day-flying moths
Venue: Journal of Comparative Physiology A

AbstractIn certain nocturnal moth species the frequency range of best hearing shifts to higher frequencies during repeated sound stimulation. This could provide the moths with a mechanism to better detect approaching echolocating bats. However, such a dynamic up-tuning would be of little value for day-flying moths that use intra-specific acoustic communication. Here we examined if the ears of day-flying moths provide stable tuning during longer sound stimulation. Contrary to our expectations, dynamic up-tuning was found in the ear of the day-flying species Urania boisduvalii and Empyreuma pugione. Audiograms were measured with distortion-product otoacoustic emissions (DPOAEs). The level of the dominant distortion product (i.e. 2f1–f2) varied as a function of time by as much as 45 dB during ongoing acoustic stimulation, showing a systematic decrease at low frequencies and an increase at high frequencies. As a consequence, within about 2 s of acoustic stimulation, the DPOAEs audiogram shifted from low to high frequencies. Despite the up-tuning, the range of best audition still fell within the frequency band of the species-specific communication signals, suggesting that intra-specific communication should not be affected adversely. Up-tuning could be an ancestral condition in moth ears that in day-flying moths does not underlie larger selection pressure.
The contrast sensitivity function of the praying mantis Sphodromantis lineola
Venue: Journal of Comparative Physiology A

The detection of visual motion and its direction is a fundamental task faced by several visual systems. The motion detection system of insects has been widely studied with the majority of studies focussing on flies and bees. Here we characterize the contrast sensitivity of motion detection in the praying mantis Sphodromantis lineola, an ambush predator that stays stationary for long periods of time while preying on fast-moving prey. In this, its visual behaviour differs from previously studied insects and we might therefore expect its motion detection system to differ from theirs. To investigate the sensitivity of the mantis we analyzed its optomotor response in response to drifting gratings with different contrasts and spatio-temporal frequencies. We find that the contrast sensitivity of the mantis depends on the spatial and temporal frequencies present in the stimulus and is separably tuned to spatial and temporal frequency rather than specifically to object velocity. Our results also suggest that mantises are sensitive to a broad range of velocities, in which they differ from bees and are more similar to hoverflies. We discuss our results in relation to the contrast sensitivities of other insects and the visual ecology of the mantis.
Three-dimensional models of natural environments and the mapping of navigational information
Venue: Journal of Comparative Physiology A

Much evidence has accumulated in recent years, demonstrating that the degree to which navigating insects rely on path integration or landmark guidance when displaced depends on the navigational information content of their specific habitat. There is thus a need to quantify this information content. Here we present one way of achieving this by constructing 3D models of natural environments using a laser scanner and purely camera-based methods that allow us to render panoramic views at any location. We provide (1) ground-truthing of such reconstructed views against panoramic images recorded at the same locations; (2) evidence of their potential to map the navigational information content of natural habitats; (3) methods to register these models with GPS or with stereo camera recordings and (4) examples of their use in reconstructing the visual information available to walking and flying insects. We discuss the current limitations of 3D modelling, including the lack of spectral and polarisation information, but also the opportunities such models offer to map the navigational information content of natural habitats and to test visual navigation algorithms under ‘real-life’ conditions.
Neurophysiological mechanisms underlying sex- and maturation-related variation in pheromone responses in honey bees (Apis mellifera)
Venue: Journal of Comparative Physiology A

In the honey bee (Apis mellifera), social organization is primarily mediated by pheromones. Queen-produced 9-oxo-2-decenoic acid (9-ODA) functions as both a social and sex pheromone, eliciting attraction in both female workers and male drones, but also affecting other critical aspects of worker physiology and behavior. These effects are also maturation related, as younger workers and sexually mature drones are most receptive to 9-ODA. While changes in the peripheral nervous system drive sex-related differences in sensitivity to 9-ODA, the mechanisms driving maturation-related shifts in receptivity to 9-ODA remain unknown. Here, we investigate the hypothesis that changes at the peripheral nervous system may be mediating plastic responses to 9-ODA by characterizing expression levels of AmOR11 (the olfactory receptor tuned to 9-ODA) and electrophysiological responses to 9-ODA. We find that receptor expression correlates significantly with behavioral receptivity to 9-ODA, with nurses and sexually mature drones exhibiting higher levels of expression than foragers and immature drones, respectively. Electrophysiological responses to 9-ODA were not found to correlate with behavioral receptivity or receptor expression, however. Thus, while receptor expression at the periphery exhibits a level of plasticity that correlates with behavior, the mechanisms driving maturation-dependent responsiveness to 9-ODA appear to function primarily in the central nervous system.
Phylogenetic and individual variation in gastropod central pattern generators
Venue: Journal of Comparative Physiology A

Gastropod molluscs provide a unique opportunity to explore the neural basis of rhythmic behaviors because of the accessibility of their nervous systems and the number of species that have been examined. Detailed comparisons of the central pattern generators (CPGs) underlying rhythmic feeding and swimming behaviors highlight the presence and effects of variation in neural circuits both across and within species. The feeding motor pattern of the snail, Lymnaea, is stereotyped, whereas the feeding motor pattern in the sea hare, Aplysia, is variable. However, the Aplysia motor pattern is regularized with operant conditioning or by mimicking learning using the dynamic clamp to change properties of CPG neurons. Swimming evolved repeatedly in marine gastropods. Distinct neural mechanisms underlie dissimilar forms of swimming, with homologous neurons playing different roles. However, even similar swimming behaviors in different species can be produced by distinct neural mechanisms, resulting from different synaptic connectivity of homologous neurons. Within a species, there can be variation in the strength and even valence of synapses, which does not have functional relevance under normal conditions, but can cause some individuals to be more susceptible to lesion of the circuit. This inter- and intra-species variation provides novel insights into CPG function and plasticity.
Walking and running in the desert ant Cataglyphis fortis
Venue: Journal of Comparative Physiology A

Path integration, although inherently error-prone, is a common navigation strategy in animals, particularly where environmental orientation cues are rare. The desert ant Cataglyphis fortis is a prominent example, covering large distances on foraging excursions. The stride integrator is probably the major source of path integration errors. A detailed analysis of walking behaviour in Cataglyphis is thus of importance for assessing possible sources of errors and potential compensation strategies. Zollikofer ( 1994a) demonstrated consistent use of the tripod gait in Cataglyphis, and suggested an unexpectedly constant stride length as a possible means of reducing navigation errors. Here, we extend these studies by more detailed analyses of walking behaviour across a large range of walking speeds. Stride length increases linearly and stride amplitude of the middle legs increases slightly linearly with walking speed. An initial decrease of swing phase duration is observed at lower velocities with increasing walking speed. Then it stays constant across the behaviourally relevant range of walking speeds. Walking speed is increased by shortening of the stance phase and of the stance phase overlap. At speeds larger than 370 mms−1, the stride frequency levels off, the duty factor falls below 0.5, and Cataglyphis transitions to running with aerial phases.