nils-herrmann/clean_scirepeval huggingface dataset:
Photoreceptor projections and receptive fields in the dorsal rim area and main retina of the locust eye
Venue: Journal of Comparative Physiology A

In many insect species, photoreceptors of a small dorsal rim area of the eye are specialized for sensitivity to the oscillation plane of polarized skylight and, thus, serve a role in sky compass orientation. To further understand peripheral mechanisms of polarized-light processing in the optic lobe, we have studied the projections of photoreceptors and their receptive fields in the main eye and dorsal rim area of the desert locust, a model system for polarization vision analysis. In both eye regions, one photoreceptor per ommatidium, R7, has a long visual fiber projecting through the lamina to the medulla. Axonal fibers from R7 receptors of the dorsal rim area have short side branches throughout the depth of the dorsal lamina and maintain retinotopic projections to the dorsal medulla following the first optic chiasma. Receptive fields of dorsal rim photoreceptors are considerably larger (average acceptance angle 33°) than those of the main eye (average acceptance angle 2.04°) and, taken together, cover almost the entire sky. The data challenge previous reports of two long visual fibers per ommatidium in the main eye of the locust and provide data for future analysis of peripheral networks underlying polarization opponency in the locust brain.
Early memory in the parasitoid wasp Nasonia vitripennis
Venue: Journal of Comparative Physiology A

We studied early memory in Nasonia vitripennis, a parasitoid of fly pupae and emerging model organism for ecological questions in the context of learning. After associative training consisting of one drilling experience in a host in the presence of cinnamon, females showed a preference to cinnamon for at least 24 h. To study sensitisation, wasps were trained by one drilling in a host without cinnamon. These wasps were not attracted to cinnamon immediately afterwards. Obviously, sensitisation is not involved in early memory. Wasps that were anaesthetised by CO2 directly after associative training did not react to cinnamon 30–45 min later, but after 1 and 24 h. CO2 treatment ≥5 min after training did not erase the reaction to cinnamon. This indicates the existence of four early memory phases. (a) One phase <5 min after training, in which CO2 has to be applied to become effective. (b) One subsequent phase which is resistant to CO2. (c) One phase <1 h in which memory can be erased by CO2 treatment directly after training. (d) One phase 1–24 h not affected by CO2 treatment. Together with earlier data this enables us to establish a complete memory structure for N. vitripennis.
The memory structure of navigation in honeybees
Venue: Journal of Comparative Physiology A

The analytical approach to navigation studies aims to identify elementary sensory motor processes that guide an animal to a remote site. This approach will be used here to characterize components of navigation in a flying insect, the honeybee. However, navigation studies need to go beyond an analysis of behavioral routines to come up with a synthesis. We will defend the concept of an active memory structure guiding navigation in bees that is best described as a mental or cognitive map. In our opinion, spatial/temporal relations of landmarks are stored in a mental map in such a way that behavioral routines such as expectation and planning, as indicated by shortcutting, are possible. We view the mental map of animals including the honeybee as an “action memory of spatial relations” rather than as a sensory representation as we humans experience it by introspection. Two components characterize the mental map, the relational representation of landmarks and the meaning of locations to the animal. As yet, there is little data to suggest that bees assign meaning to the experienced locations. To explore this possibility, further studies will be needed, whereby honeybees provide a unique model to address this question.
A review of visual perception mechanisms that regulate rapid adaptive camouflage in cuttlefish
Venue: Journal of Comparative Physiology A

We review recent research on the visual mechanisms of rapid adaptive camouflage in cuttlefish. These neurophysiologically complex marine invertebrates can camouflage themselves against almost any background, yet their ability to quickly (0.5–2 s) alter their body patterns on different visual backgrounds poses a vexing challenge: how to pick the correct body pattern amongst their repertoire. The ability of cuttlefish to change appropriately requires a visual system that can rapidly assess complex visual scenes and produce the motor responses—the neurally controlled body patterns—that achieve camouflage. Using specifically designed visual backgrounds and assessing the corresponding body patterns quantitatively, we and others have uncovered several aspects of scene variation that are important in regulating cuttlefish patterning responses. These include spatial scale of background pattern, background intensity, background contrast, object edge properties, object contrast polarity, object depth, and the presence of 3D objects. Moreover, arm postures and skin papillae are also regulated visually for additional aspects of concealment. By integrating these visual cues, cuttlefish are able to rapidly select appropriate body patterns for concealment throughout diverse natural environments. This sensorimotor approach of studying cuttlefish camouflage thus provides unique insights into the mechanisms of visual perception in an invertebrate image-forming eye.
Habitat-related differences in auditory processing of complex tones and vocal signal properties in four songbirds
Venue: Journal of Comparative Physiology A

We examined temporal processing of harmonic tone complexes in two woodland species (tufted titmice and white-breasted nuthatches) and two open-habitat species (house sparrows and white-crowned sparrows). Envelope and fine-structure processing were quantified using the envelope following response (EFR) and frequency following response (FFR). We predicted stronger EFRs in the open-habitat species based on broader auditory filters and greater amplitude modulation of vocal signals in this group. We predicted stronger FFRs in woodland species based on narrower auditory filters. As predicted, EFR amplitude was generally greatest in the open habitat species. FFR amplitude, in contrast, was greatest in white-crowned sparrows with no clear difference between habitats. This result cannot be fully explained by species differences in audiogram shape and might instead reflect greater acoustic complexity of songs in the white-crowned sparrow. Finally, we observed stronger FFRs in woodland species when tones were broadcast with the next higher harmonic in the complex. Thus, species such as nuthatches that have songs with strong harmonics may process these sounds using enhanced spectral processing instead of enhanced amplitude-envelope processing. The results suggest coevolution between signal design and temporal processing of complex signals and underscore the need to study auditory processing with a diversity of signals.
Metabolic response in liver and Brockmann bodies of rainbow trout to inhibition of lipolysis; possible involvement of the hypothalamus–pituitary–interrenal (HPI) axis
Venue: Journal of Comparative Physiology B

We previously demonstrated in rainbow trout that the decrease in circulating levels of fatty acid (FA) induced by treating fish with SDZ WAG 994 (SDZ) induced a counter-regulatory response in which the activation of the hypothalamus–pituitary–interrenal (HPI, equivalent to mammalian hypothalamus–pituitary–adrenal) axis was likely involved. This activation, probably not related to the control of food intake through FA sensor systems but to the modulation of lipolysis in peripheral tissues, liver and Brockmann bodies (BB, the main site of pancreatic endocrine cells in fish), would target the restoration of FA levels in plasma. To assess this hypothesis, we lowered circulating FA levels by treating fish with SDZ alone, or SDZ in the presence of metyrapone (an inhibitor of cortisol synthesis). In liver, the changes observed were not compatible with a direct FA-sensing response but with a stress response, which allows us to suggest that the detection of a FA decrease in the hypothalamus elicits a counter-regulatory response in liver, resulting in an activation of lipolysis to restore FA levels in plasma. The activation of these metabolic changes in liver could be attributable to the activation of the HPI axis and/or to the action of sympathetic pathways. In contrast, in BB, changes in circulating FA levels induce changes in several parameters compatible with the function of FA-sensing systems informing about the decrease in circulating FA levels.
Visual outdoor response of multiple wild bee species: highly selective stimulation of a single photoreceptor type by sunlight-induced fluorescence
Venue: Journal of Comparative Physiology A

Bees have ultraviolet (UV), blue and green photoreceptor types in their compound eyes with which they locate food sources in landscapes that change continuously in cues emanating from plants and backgrounds against which they are perceived. The complexity of bee vision has been elucidated through studies examining individual species under laboratory conditions. Here, we used a bee-attractive fluorescent blue trap as a model for analyzing visual signals in operation outdoors, and across bee species. We manipulated trap color (appearance to humans under light with weak UV component) and UV-induced fluorescence emission, and aligned field capture results with bee vision models. Our studies show that the bees were attracted to traps that under solar illumination exhibited strong fluorescence emission exclusively in the blue spectral region. Through quantitative analysis, we established that strong spectral overlap of trap emittance with the photosensitivity characteristic of the blue receptor type and minimal overlap with those of the other two receptor types is the most critical property of attractive traps. A parameter has been identified which predicts the degree of attractiveness of the traps and which captures trends in the field data across wild bee species and for a diversity of backgrounds.
Membrane properties of Enchytraeus albidus originating from contrasting environments: a comparative analysis
Venue: Journal of Comparative Physiology B

Ectothermic animals adapted to different environmental temperatures are hypothesized to have biological membranes with different chemical and physical properties such that membrane properties are optimized for their particular thermal environments. To test this hypothesis we analyzed the composition of phospholipid fatty acids (PLFAs) in seven different populations of Enchytraeus albidus originating from different thermal environments. The seven populations differ markedly in origin (polar-temperate) and are also characterized by marked difference in cold tolerance. The dominant PLFAs of E. albidus were C20:5, C20:4 and C20:2 (53–61 % of total PLFA) followed by C18:0, C20:1 and C22:2 (17–20 % of total PLFA). As hypothesized the PLFA composition varied significantly between populations and molar percentage of several of the PLFAs (particularly C18:2) correlated with the lower lethal temperature (LT50) of the seven populations. Unsaturation ratio (UFA/SFA) and average PLFA chain length also correlated significantly with LT50, such that cold sensitive populations had a shorter chain length and a lower UFA/SFA compared to cold tolerant populations. Reconstituted membranes of the least and most cold tolerant populations were used to compare membranes’ physical properties by fluorescence anisotropy and bending rigidity. Measurements of anisotropy did not show any overall difference between populations with different cold tolerance. This could be interpreted as if E. albidus populations have achieved a similar “optimal” fluidity of the membrane with a somewhat different PLFA composition. Our study suggests that membrane lipid composition could be important for the cold tolerance of E. albidus; however, these differences are not easily differentiated in the measurements of the membranes’ physical properties. Other parameters such as accumulation of glucose for cryoprotection and energy supply may also be important components of enchytraeid freeze tolerance.
Food searches and guiding structures in North African desert ants, Cataglyphis
Venue: Journal of Comparative Physiology A

North African desert ants, Cataglyphis fortis, use path integration as their primary means of navigation. The ants also use landmarks when these are available to improve navigation accuracy. Extended landmarks, such as walls and channels, may serve further functions, for example, local guidance or triggering of local vectors. The roles of such structures were usually examined in homing animals but not during food searches. When searching for familiar feeding sites, Cataglyphis may show intriguing deviations from expected search performances. These may result from the presence of extended landmarks, namely experimental channels. Here we scrutinise this hypothesis of landmark guidance in food searches. We prevented the ants from seeing the channel walls by covering their eyes, except the dorsal rim area. This experiment was repeated in the open test field with an alley of black cylinders to extend our findings to a more normal foraging environment. Ants with covered eyes did not deviate from expected search performances, whereas ants with normal eyes extended their searches along the axis of the leading structures by 15–20 %, in both channels and landmark alleys. This demonstrates that Cataglyphis orients along extended landmarks when searching for familiar food sources and alters its search pattern accordingly.
Path integration, views, search, and matched filters: the contributions of Rüdiger Wehner to the study of orientation and navigation
Venue: Journal of Comparative Physiology A

Rüdiger Wehner’s work on insect orientation and navigation has influenced many scientists studying navigation, not only in ants and bees, but in other animals as well. We review the scientific legacy of six topics arising from Wehner’s work on navigation. The polarisation compass is a chapter with a lot of behavioural and neurobiological detail. It has influenced the study of polarisation vision in other systems, and led Wehner to formulate the concept of a matched filter. The matched filter has probably had earlier formulations, but Wehner’s paper on it has been much cited in studies on navigation and in other fields. The polarisation compass serves the task of path integration in insects. Work on path integration took off in the 1980s with work on desert ants and rodents. The use of terrestrial visual cues, landmarks or the panorama in view-based matching is another major theme of navigational research today. Search strategies were also well described in desert ants, and this line of research helped to launch theoretical and empirical developments in searching behaviour, now a lively area of research. Finally, robotic work has often drawn inspiration from work on insect navigation. We end with some discussion of current research directions.
GABAergic neurotransmission and retinal ganglion cell function
Venue: Journal of Comparative Physiology A

Ganglion cells are the output retinal neurons that convey visual information to the brain. There are ~20 different types of ganglion cells, each encoding a specific aspect of the visual scene as spatial and temporal contrast, orientation, direction of movement, presence of looming stimuli; etc. Ganglion cell functioning depends on the intrinsic properties of ganglion cell’s membrane as well as on the excitatory and inhibitory inputs that these cells receive from other retinal neurons. GABA is one of the most abundant inhibitory neurotransmitters in the retina. How it modulates the activity of different types of ganglion cells and what is its significance in extracting the basic features from visual scene are questions with fundamental importance in visual neuroscience. The present review summarizes current data concerning the types of membrane receptors that mediate GABA action in proximal retina; the effects of GABA and its antagonists on the ganglion cell light-evoked postsynaptic potentials and spike discharges; the action of GABAergic agents on centre-surround organization of the receptive fields and feature related ganglion cell activity. Special emphasis is put on the GABA action regarding the ON–OFF and sustained–transient ganglion cell dichotomy in both nonmammalian and mammalian retina.
Maintenance of skeletal muscle energy homeostasis during prolonged wintertime fasting in the raccoon dog (Nyctereutes procyonoides)
Venue: Journal of Comparative Physiology B

The raccoon dog (Nyctereutes procyonoides) is a canid species with autumnal fattening and prolonged wintertime fasting. Nonpathological body weight cycling and the ability to tolerate food deficiency make this species a unique subject for studying physiological mechanisms in energy metabolism. AMP-activated protein kinase (AMPK) is a cellular energy sensor regulating energy homeostasis. During acute fasting, AMPK promotes fatty acid oxidation and enhances glucose uptake. We evaluated the effects of prolonged fasting on muscle energy metabolism in farm-bred raccoon dogs. Total and phosphorylated AMPK and acetyl-CoA carboxylase (ACC), glucose transporter 4 (GLUT 4), insulin receptor and protein kinase B (Akt) protein expressions of hind limb muscles were determined by Western blot after 10 weeks of fasting. Plasma insulin, leptin, ghrelin, glucose and free fatty acid levels were measured, and muscle myosin heavy chain (MHC) isoform composition analyzed. Fasting had no effects on AMPK phosphorylation, but total AMPK expression decreased in m. rectus femoris, m. tibialis anterior and m. extensor digitorum longus resulting in a higher phosphorylation ratio. Decreased total expression was also observed for ACC. Fasting did not influence GLUT 4, insulin receptor or Akt expression, but Akt phosphorylation was lower in m. flexor digitorum superficialis and m. extensor digitorum longus. Three MHC isoforms (I, IIa and IIx) were detected without differences in composition between the fasted and control animals. The studied muscles were resistant to prolonged fasting indicating that raccoon dogs have an effective molecular regulatory system for preserving skeletal muscle function during wintertime immobility and fasting.
Monoterpenes as inhibitors of digestive enzymes and counter-adaptations in a specialist avian herbivore
Venue: Journal of Comparative Physiology B

Many plants produce plant secondary metabolites (PSM) that inhibit digestive enzymes of herbivores, thus limiting nutrient availability. In response, some specialist herbivores have evolved digestive enzymes that are resistant to inhibition. Monoterpenes, a class of PSMs, have not been investigated with respect to the interference of specific digestive enzymes, nor have such interactions been studied in avian herbivores. We investigated this interaction in the Greater Sage-Grouse (Phasianidae: Centrocercus urophasianus), which specializes on monoterpene-rich sagebrush species (Artemisia spp.). We first measured the monoterpene concentrations in gut contents of free-ranging sage-grouse. Next, we compared the ability of seven individual monoterpenes present in sagebrush to inhibit a protein-digesting enzyme, aminopeptidase-N. We also measured the inhibitory effects of PSM extracts from two sagebrush species. Inhibition of aminopeptidase-N in sage-grouse was compared to inhibition in chickens (Gallus gallus). We predicted that sage-grouse enzymes would retain higher activity when incubated with isolated monoterpenes or sagebrush extracts than chicken enzymes. We detected unchanged monoterpenes in the gut contents of free-ranging sage-grouse. We found that three isolated oxygenated monoterpenes (borneol, camphor, and 1,8-cineole) inhibited digestive enzymes of both bird species. Camphor and 1,8-cineole inhibited enzymes from chickens more than from sage-grouse. Extracts from both species of sagebrush had similar inhibition of chicken enzymes, but did not inhibit sage-grouse enzymes. These results suggest that specific monoterpenes may limit the protein digestibility of plant material by avian herbivores. Further, this work presents additional evidence that adaptations of digestive enzymes to plant defensive compounds may be a trait of specialist herbivores.
Natural variation in paternal behavior is associated with central estrogen receptor alpha and oxytocin levels
Venue: Journal of Comparative Physiology A

In monogamous mammals paternal care plays an important role in the neural and behavioral development of offspring. However, the neuroendocrine mechanisms underlying paternal behavior remain poorly understood. Here, we investigate the association between natural variation in paternal responsiveness and central levels of oxytocin (OT) and estrogen receptor alpha (ERα). We used the frequency of licking and grooming behavior to distinguish low paternal responsiveness and high paternal responsiveness in virgin mandarin voles (Microtus mandarinus). Males that engaged in high paternal behavior had elevated levels of OT immunoreactive neurons in the paraventricular nuclei of the hypothalamus and supraoptic nuclei of the hypothalamus compared with males that displayed low paternal behavior. Likewise, males of high paternal responsiveness had more ERα immunoreactive neurons in the medial preoptic area, bed nucleus of the stria terminalis, arcuate nucleus of the hypothalamus and medial amygdaloid nucleus compared to low responsive males. The level of ERα immunoreactive neurons in the ventromedial hypothalamic nucleus was lower in highly paternal males compared to less paternal males. These results suggest that natural variation in paternal responsiveness may be directly related to variation in central OT and ERα.
Gut-microbiota-targeted diets modulate human immune status
Venue: Cell

Diet modulates the gut microbiome, which in turn can impact the immune system. Here, we determined how two microbiota-targeted dietary interventions, plant-based fiber and fermented foods, influence the human microbiome and immune system in healthy adults. Using a 17-week randomized, prospective study (n = 18/arm) combined with -omics measurements of microbiome and host, including extensive immune profiling, we found diet-specific effects. The high-fiber diet increased microbiome-encoded glycan-degrading carbohydrate active enzymes (CAZymes) despite stable microbial community diversity. Although cytokine response score (primary outcome) was unchanged, three distinct immunological trajectories in high-fiber consumers corresponded to baseline microbiota diversity. Alternatively, the high-fermented-food diet steadily increased microbiota diversity and decreased inflammatory markers. The data highlight how coupling dietary interventions to deep and longitudinal immune and microbiome profiling can provide individualized and population-wide insight. Fermented foods may be valuable in countering the decreased microbiome diversity and increased inflammation pervasive in industrialized society.