nils-herrmann/clean_scirepeval huggingface dataset:
Right ventricle in hypoplastic left heart syndrome exhibits altered hemodynamics in the human fetus.
Venue: Journal of biomechanics

Hypoplastic left heart syndrome (HLHS) represents approximately 9% of all congenital heart defects and is one of the most complex, with the left side of the heart being generally underdeveloped. Numerous studies demonstrate that intracardiac fluid flow patterns in the embryonic and fetal circulation can impact cardiac structural formation and remodeling. This highlights the importance of quantifying the altered hemodynamic environment in congenital heart defects, like HLHS, relative to a normal heart as it relates to cardiac development. Therefore, to study human cardiovascular fetal flow, computational fluid dynamic simulations were performed using 4D patient-specific ultrasound scans in normal and HLHS hearts. In these simulations, we find that the HLHS right ventricle exhibits a greater cardiac output than normal; yet, hemodynamics are relatively similar between normal and HLHS right ventricles. Overall, this study provides detailed quantitative flow patterns for HLHS, which has the potential to guide future prevention and therapeutic interventions, while more immediately providing additional functional detail to cardiologists to aid in decision making.
Print-A-Punch: A 3D printed device to cut dumbbell-shaped specimens from soft tissue for tensile testing.
Venue: Journal of biomechanics

The failure behavior and mechanical properties of soft tissue can be characterized by conducting uniaxial tensile tests on small sectioned specimens, called test coupons. An ideal coupon geometry for tensile testing is a dumbbell shape (dog-bone), yet the cost and time required to fabricate custom steel punches to cut dumbbell-shaped coupons has hindered their universal application in biomechanics research. In this study, we developed an economical and reliable cutting device that can extract dumbbell-shaped coupons from soft biological tissue. The novel device, called Print-A-Punch, uses three-dimensional (3D) printed components in combination with standard fasteners and replaceable flexible razors. We identified design factors that influence the dimensional accuracy and symmetry of elastomer coupons extracted using this cutting device, and demonstrated its use on bovine meniscus. Advantages of this 3D printed device include a fast fabrication time, low material cost, good accuracy, replaceable blades, and an ability to scale coupon dimensions for specific tissues and experiments. By reducing the cost and time to cut accurate dumbbell-shaped coupons, this technology can facilitate the broad adoption of standard test methods that improve the quality and reproducibility of tensile tests in soft biological tissue. Researchers can freely download a set of STL files from this study to build their own Print-A-Punch device (https://boisestate.edu/coen-ntm/technology/print-a-punch).
Quantifying trunk neuromuscular control using seated balancing and stability threshold.
Venue: Journal of biomechanics

Performance during seated balancing is often used to assess trunk neuromuscular control, including evaluating impairments in back pain populations. Balancing in less challenging environments allows for flexibility in control, which may not depend on health status but instead may reflect personal preferences. To make assessment less ambiguous, trunk neuromuscular control should be maximally challenged. Thirty-four healthy subjects balanced on a robotic seat capable of adjusting rotational stiffness. Subjects balanced while rotational stiffness was gradually reduced. The rotational stiffness at which subjects could no longer maintain balance, defined as critical stiffness (kCrit), was used to quantify the subjects' trunk neuromuscular control. A higher kCrit reflects poorer control, as subjects require a more stable base to balance. Subjects were tested on three days separated by 24 hours to assess test-retest reliability. Anthropometric (height and weight) and demographic (age and sex) influences on kCrit and its reliability were assessed. Height and age did not affect kCrit; whereas, being heavier (p < 0.001) and female (p = 0.042) significantly increased kCrit. Reliability was also affected by anthropometric and demographic factors, highlighting the potential problem of inflated reliability estimates from non-control related attributes. kCrit measurements appear reliable even after removing anthropometric and demographic influences, with adjusted correlations of 0.612 (95%CI: 0.433-0.766) versus unadjusted correlations of 0.880 (95%CI: 0.797-0.932). Besides assessment, trainers and therapists prescribing exercise could use the seated balance task and kCrit to precisely set difficulty level to a percentage of the subject's stability threshold to optimize improvements in trunk neuromuscular control and spine health.
Comparison of different lifting analysis tools in estimating lower spinal loads - Evaluation of NIOSH criterion.
Venue: Journal of biomechanics

Excessive loads on the human spine is recognized as a risk factor for back injuries/pain. Various lifting analysis tools such as musculoskeletal models, regression equations and NIOSH (National Institute for Occupational Safety and Health) lifting equation (NLE) have been proposed to evaluate and mitigate associated risks during manual material handling activities. Present study aims to compare predicted spinal loads from 5 different lifting analysis tools as well as to critically evaluate the NIOSH recommended weight limit (RWL). Spinal loads were estimated under different symmetric/asymmetric lifting tasks in which hand-load mass at each task was set based on RWL from NLE. Estimated intradiscal pressures (IDPs) of various tools were also compared with in vivo measurements. We compared RWL by NLE versus our estimations of RWL calculated from our regression equations using biomechanical criteria (compression <3400 N with/without shear <1000, 1250 or 1500 N). Our regression equations followed by OpenSim, AnyBody, simple polynomial and 3DSSPP satisfactorily predicted L4-L5 IDPs. Lifting analysis tools estimated comparable spinal compression forces (mean Pearson's r = 0.80; standard deviation of relative difference = 26%) while in shear, differences were greater (mean Pearson's r = 0.68; standard deviation of relative difference = 56%). NLE estimations of RWL were conservative in comparison with our estimations for lean individuals (BMI < 25 kg/m2) when compression <3400 N and shear <1250 N were considered as the biomechanical criteria. For heavier individuals, however, NLE estimations of RWL generated spinal compression >3400 N (NIOSH biomechanical safety threshold) as well as shear >1000 N. Although RWLs estimated by NLE was body weight independent, body weight substantially altered RWLs estimated from our regression equations. For improved estimation of the risk of injury, more accurate failure criteria for spinal segments are essential.
The importance of collagen composition and biomechanics for the porcine aortic root.
Venue: Journal of biomechanics

A thorough understanding of the aortic root structure and biomechanics is necessary when performing aortic valve-sparing procedures in patients with aortic root aneurysms. This study aimed to evaluate the amount of collagen and biomechanics at different levels and segments of the aortic root. Ten aortic roots from healthy pigs were excised including the aortic annulus, the sinuses of Valsalva, and the sinotubular junction (STJ). Specimens were further divided into three circumferential segments; left coronary (LC)-, right coronary (RC)-, and non-coronary (NC) sinus. Collagen was determined using hydroxyproline analysis and specimens were tested biomechanically for stress-strain relations. The annulus showed significantly larger average maximum stiffness (9.6 ± 4.5 N/mm) compared with the sinus (4.5 ± 2.0 N/mm) and STJ (4.8 ± 1.8 N/mm). The average collagen content was likewise higher in the annulus (4.0 ± 1.0 mg/ml) compared with the sinus (2.4 ± 0.6 mg/ml) and STJ (2.2 ± 0.5 mg/ml) for all three segments. The NC sinus segment exhibited a significantly larger maximum stiffness and stress under static conditions compared with the RC. These results suggest that the aortic root is heterogeneous in both structure and biomechanical properties and that it varies both in levels and segments of the aortic root. Future surgical approaches should consider enhanced strength parameters for specific areas of the aortic root to achieve the best results when performing aortic valve-sparing techniques. From this study, we conclude that the aortic annulus needs special attention to imitate normal physiologic properties during aortic valve-sparing surgery due to its higher maximum stiffness, stress, and load. Modified future surgical procedures could potentially prevent recurrent aneurysmal formation.
Marker-less versus marker-based driven musculoskeletal models of the spine during static load-handling activities.
Venue: Journal of biomechanics

Evaluation of workers' body posture in workstations is a prerequisite to estimate spinal loads and assess risk of injury for the subsequent design of preventive interventions. The Microsoft Kinect™ sensor is, in this regard, advantageous over the traditional skin-marker-based optical motion capture systems for being marker-less, portable, cost-effective, and easy-to-use in real workplaces. While several studies have demonstrated the validity/reliability of the Kinect for posture measurements especially during gait trials, its capability to adequately drive a detailed spine musculoskeletal model for injury risk assessments remains to be investigated. Lumbosacral (L5-S1) load predictions of a Kinect-driven and a gold-standard marker-based Vicon-driven musculoskeletal model were compared for various standing static load-handling activities at different heights/asymmetry angles/distances. Full body kinematics of eight individuals each performing eighteen activities were simultaneously recorded by a single-front-placed Kinect and a 10-camera Vicon motion capture system and input to AnyBody Modeling System. The predicted spinal loads by the two models were in average different by 17.8 and 25.9% for the L5-S1 disc compressive and shear forces, respectively, with smaller errors for the activities at higher load heights. Some activities performed near the floor could, however, not be recorded by a single-front-placed Kinect sensor due to the joint occlusion. The capability of the Kinect to adequately drive a spine musculoskeletal model depended on the complexity of the activity. While a single front-placed Kinect camera can be used to evaluate spinal loads in a wide range of static/quasi-static activities, cautious should be exercised when evaluating tasks performed near the floor.
A three-dimensional multiscale finite element model of bone coupling mineralized collagen fibril networks and lamellae.
Venue: Journal of biomechanics

Despite evidence of contribution of mineralized collagen fibrils (MCF) to both the microscale elastic and fracture response of bone, the extent of influence of MCF orientation and material property variation on the lamellar scale mechanical properties is still not well quantified. To this end, in this study, we developed a three-dimensional multiscale finite element model that linked submicroscale models of MCF networks to microscale models of several lamellae. The developed models evaluated the individual and relative influence of MCF orientation as well as material property variation due to MCF mineral distribution and interaction on the lamellar scale mechanical response of bone. The simulation results showed that the elastic modulus, ultimate strength, and fracture energy at the lamellar scale decreased as the angle between the main axis of MCFs and loading direction increased. The heterogeneity in mineral distribution along MCFs did not lead to a significant difference in the mechanical behavior at the lamellar scale compared to the material property heterogeneity introduced in the models due to MCF orientation variation. Variation in the interaction between MCFs at the submicroscale had a substantial influence on the lamellar scale mechanical properties. In summary, this study established a multiscale model that linked MCFs to lamellae providing the capability of quantifying the relative influence of modifications in material and organizational properties of MCFs due to age, diseases, and treatments on the fracture processes at the lamellar length scale.
Prediction of upper airway dryness and optimal continuous positive airway pressure conditions
Venue: Journal of Biomechanics

Continuous positive airway pressure is the most effective long-term treatment for obstructive sleep apnoea, which is a sleeping disorder characterized by pauses in breathing during sleep. It introduces pressurized atmospheric air into the respiratory system in order to maintain open airways without blockage. Some continuous positive airway pressure devices incorporate a convective heat transfer humidifier to overcome dryness. However, many side effects, including the unacceptable excess of water droplets in the air supply line, have been reported and improvements are essential for better patient’s comfort and acceptance of the therapy. The excess of water droplets is attributed to the qualitative rather than the quantitative approach of determining the rise in temperature and humidity of the inspired air. Therefore, a human upper airway mathematical model is developed to predict the heat and water transfer variation between normal breathing and continuous positive airway pressure conditions and determine the optimal input temperature and relative humidity in the continuous positive airway pressure humidifier.
The influence of flowrate and gas density on positive airway pressure for high flow nasal cannula applied to infant airway replicas.
Venue: Journal of biomechanics

High flow nasal cannula (HFNC) therapy has been previously shown to produce positive upper airway pressures in adult and child patients. This work aimed to evaluate and quantify the effects of HFNC flowrate and gas type on airway pressures measured in vitro in infant airway replicas. Ten realistic infant airway replicas, extending from nares to trachea, were connected in turn to a lung simulator and were supplied gas flows through HFNC. Air and heliox were each provided at two weight-indexed flowrates, 1 l/min/kg and 2 l/min/kg. Pressure and lung volume were continuously measured during simulated breathing. For constant simulated patient effort, no statistically significant change in tidal volume was measured between baseline and lower or higher HFNC flowrates, nor was there any significant difference in tidal volume between air and heliox. Tracheal pressure increased with increasing HFNC flow rate, and was highly variable between airway replicas. Higher pressures were measured for air versus heliox. For air supplied at 2 l/min/kg, average airway pressures in excess of 4 cm H2O were generated, with positive end-expiratory pressure (PEEP) ranging from 2.5 to nearly 12 cm H2O across the replicas. A predictive correlation for PEEP was proposed based on supplied gas density and flow velocities exiting the cannula and nares, and was able to account for a portion of variability between airway replicas (R2 = 0.913). Additionally, PEEP was well correlated with, and predictive of, expiratory peak pressure (R2 = 0.939) and average inspiratory pressure (R2 = 0.944).
Isolated nuclei stiffen in response to low intensity vibration.
Venue: Journal of biomechanics

The nucleus, central to all cellular activity, relies on both direct mechanical input and its molecular transducers to sense and respond to external stimuli. While it has been shown that isolated nuclei can adapt to applied force ex vivo, the mechanisms governing nuclear mechanoadaptation in response to physiologic forces in vivo remain unclear. To investigate nuclear mechanoadaptation in cells, we developed an atomic force microscopy (AFM) based procedure to probe live nuclei isolated from mesenchymal stem cells (MSCs) following the application of low intensity vibration (LIV) to determine whether nuclear stiffness increases as a result of LIV. Results indicated that isolated nuclei were, on average, 30% softer than nuclei tested within intact MSCs prior to LIV. When the nucleus was isolated following LIV (0.7 g, 90 Hz, 20 min) applied four times (4×) separated by 1 h intervals, stiffness of isolated nuclei increased 75% compared to non-LIV controls. LIV-induced nuclear stiffening required functional Linker of Nucleoskeleton and Cytoskeleton (LINC) complex, but was not accompanied by increased levels of the nuclear envelope proteins LaminA/C or Sun-2. While depleting LaminA/C or Sun-1&2 resulted in either a 47% or 39% increased heterochromatin to nuclear area ratio in isolated nuclei, the heterochromatin to nuclear area ratio was decreased by 25% in LIV-treated nuclei compared to controls, indicating LIV-induced changes in the heterochromatin structure. Overall, our findings indicate that increased apparent cell stiffness in response to exogenous mechanical challenge of MSCs in the form of LIV is in part retained by increased nuclear stiffness and changes in heterochromatin structure.
A comparison of balance-correcting responses induced with platform-translation and shoulder-pull perturbation methods.
Venue: Journal of biomechanics

The understanding of reactive balance control mechanisms in humans emanates from studies utilizing a variety of perturbation methods, instructions, and sensory conditions. The use of different perturbation methods may produce method-specific balance-correcting responses. This study evaluated balance-correcting responses induced with platform-translation and shoulder-pull methods with equilibrated perturbation intensities, and whether the absence of vision affects balance-correcting responses differently between perturbation methods. Fifteen healthy young males participated. Unexpected forward and backward platform-translation and shoulder-pull perturbations were induced with eyes-open and eyes-closed. Participants were asked to behave naturally. Forward stepping trials were analyzed. Margin of stability (MOS) was calculated from the position data of reflective markers placed strategically around the body. MOS was reported at step onset and at foot contact. MOS was smaller at step onset (0.01 ± 0.01 m) and at foot contact (0.09 ± 0.01 m) during platform-translation trials and at both time points during shoulder-pull trials (0.04 ± 0.01 m and 0.17 ± 0.01 m, respectively). The absence of vision did not affect MOS at step onset. At foot contact during platform-translation with eyes-closed MOS was larger (0.11 ± 0.01 m) than with eyes-open (0.08 ± 0.01 m), but not different between eyes-open (0.17 ± 0.01 m) and eyes-closed (0.18 ± 0.01 m) during shoulder-pull. Participants required a second step to recover balance in 14% of the platform-translation and 3% of the shoulder-pull trials. During platform-translation trials participants demonstrated smaller MOS which placed them in a less favorable circumstance for balance recovery. Platform-translation appears to be more challenging than shoulder-pull perturbation in terms of balance recovery. This study underscores that caution is required when interpreting results of studies utilizing different perturbation paradigms.
Quantifying the ranges of relative motions of the intervertebral discs and facet joints in the normal cervical spine.
Venue: Journal of biomechanics

Functional neck motion is achieved by the cervical segments with each composed of an intervertebral disc (IVD) and two facet joints (FJs). Using biplane fluoroscopic imaging, we investigated the ranges of motion (ROMs) of the three joints in the cervical spines (from C3 to C7) of eighteen asymptomatic subjects. Three functional neck motions were examined, including flexion-extension (FE), lateral bending (LB) and axial twisting (AT). Our measurements showed that the translations of both IVD and FJs primarily occurred in the sagittal plane during all neck motions, and the anteroposterior translations of IVDs were significantly smaller than those of the corresponding FJs (p < 0.05) at all segments. For example, the ranges of IVD and FJ anteroposterior translations at C3/4 were 2.7 ± 0.7 mm vs. 3.5 ± 1.1 mm in FE, 0.9 ± 0.5 mm vs. 4.6 ± 1.1 mm in LB, and 1.0 ± 0.5 mm vs. 3.1 ± 1.0 mm in AT. Furthermore, we introduced an IVD-FJ translation ratio, which represents the ratio of the IVD to FJ translational ROMs. In FE neck motion, the IVD-FJ anteroposterior translation ratios decreased from 0.81 ± 0.18 at C3 to 0.52 ± 0.19 at C3, indicating gradually increasing resistances of IVDs compared to FJs from the proximal to distal levels. In LB neck motion, the smallest IVD-FJ translation ratios (0.14 ± 0.09 and 0.43 ± 0.30) occurred at C4/5 for both anteroposterior and left-right translations. In AT neck motion, the largest IVD-FJ anteroposterior translation ratio (0.42 ± 0.21) occurred at C3/4, and was significantly different from those at C4/5 and C5/6 (p < 0.05). These data could be used as references for improving motion-preserving cervical treatment methods that aimed to achieve the normal ranges of translational motions of both IVD and FJs.
Decreasing the ambulatory knee adduction moment without increasing the knee flexion moment individually through modifications in footprint parameters: A feasibility study for a dual kinetic change in healthy subjects.
Venue: Journal of biomechanics

Gait retraining is gaining in interest to reduce loading associated to knee osteoarthritis (OA) progression. So far, interventions focused on reducing the peak knee adduction moment (pKAM) and it remains unclear if this can be done individually without increasing the peak knee flexion moment (pKFM). Additionally, while modifying foot progression angle (FPA) and step width (SW) is common, little is known about modifications in stride length (SL). This study aimed at characterizing the feasibility of a dual kinetic change, consisting in reducing the pKAM by at least 10% without increasing the pKFM. It also aimed to evaluate the added value of SL modifications in achieving the dual kinetic change. Gait trials with modifications in FPA, SW and SL were recorded for 11 young healthy subjects in a laboratory equipped with an augmented-reality system displaying instruction footprints on the floor. All participants achieved the dual kinetic change with at least one of the modifications. Seven participants achieved it with FPA modification, three with SW modification, and seven with SL modification. In conclusion, this study showed that it is feasible to achieve the dual kinetic change individually through subject-specific modifications in footprint parameters, suggesting that, in the future, gait retraining could aim for more specific kinetic changes than simply pKAM reductions. Modifying SL allowed achieving the dual kinetic change, stressing out the value of this parameter for gait retraining, in addition to FPA and SW. Finally, an augmented-reality approach was introduced to help footprint parameter modifications in the framework of knee OA.