nils-herrmann/clean_scirepeval huggingface dataset:
Locomotion of Gymnarchus niloticus : Experiment and kinematics
Venue: Journal of Bionic Engineering

In addition to forward undulatory swimming, Gymnarchus niloticus can swim via undulations of the dorsal fin while the body axis remains straight; furthermore, it swims forward and backward in a similar way, which indicates that the undulation of the dorsal fin can simultaneously provide bidirectional propulsive and maneuvering forces with the help of the tail fin. A high-resolution Charge-Coupled Device (CCD) imaging camera system is used to record kinematics of steady swimming as well as maneuvering in G. niloticus. Based on experimental data, this paper discusses the kinematics (cruising speed, wave speed, cycle frequency, amplitude, lateral displacement) of forward as well as backward swimming and maneuvering.During forward swimming, the propulsive force is generated mainly by undulations of the dorsal fin while the body axis remains straight. The kinematic parameters (wave speed, wavelength, cycle frequency, amplitude) have statistically significant correlations with cruising speed. In addition, the yaw at the head is minimal during steady swimming. From experimental data, the maximal lateral displacement of head is not more than 1% of the body length, while the maximal lateral displacement of the whole body is not more than 5% of the body length. Another important feature is that G. niloticus swims backwards using an undulatory mechanism that resembles the forward undulatory swimming mechanism. In backward swimming, the increase of lateral displacement of the head is comparatively significant; the amplitude profiles of the propulsive wave along the dorsal fin are significantly different from those in forward swimming. When G. niloticus does fast maneuvering, its body is first bent into either a C shape or an S shape, then it is rapidly unwound in a travelling wave fashion. It rarely maneuvers without the help of the tail fin and body bending.
Insects did it first: a micropatterned adhesive tape for robotic applications.
Venue: Bioinspiration & Biomimetics

Based on the structural and experimental studies of more than 300 insect species from different lineages, we have developed and characterized a bioinspired polymer material with the ability of multiple glue-free bonding and debonding. The material surface is covered with a pattern of microstructures, which resembles the geometry of tenent hairs previously described from the feet of flies, beetles, earwigs and other insects. The tape with such a microstructure pattern demonstrates at least two times higher pull-off force per unit apparent contact area compared to the flat polymer. Additionally, the tape is less sensitive to contamination by dust particles than a commercially available pressure-sensitive adhesive tape. Even if the 'insect tape' is contaminated, it can be washed with a soap solution in water, in order to completely recover its adhesive properties. We have successfully applied the tape to the 120 g wall-climbing robot Mini-Whegs. Furthermore, the tape can be used for multiple adhering of objects to glass surfaces or as a protective tape for sensitive glass surfaces of optical quality. Another area of potential applications is gripping and manipulation of objects with smooth surfaces.
Antifreeze activity of Antarctic fish glycoprotein and a synthetic polymer
Venue: Nature

Antifreeze glycoproteins (AFGPs) and proteins isolated from the sera of some polar fish species and overwintering insects are able to depress the freezing temperature of the aqueous body fluids (and of water) by means of a non-col ligative mechanism1,2. All previous measurements of the antifreeze effect have been performed on bulk samples under conditions where ice nucleation would be catalysed by participate impurities, giving limited and indeterminate degrees of undercooling. We report the first measurements of homogeneous (spontaneous) ice nucleation rates in deeply under-cooled (<233 K) solutions of AFGP and polyvinyl pyrrolidone (PVP), a well-characterized polymer which finds use as a cryoprotectant. Antifreeze activity is said3 to derive from the sorption of AFGP molecules on the active growth sites of ice crystals, preventing normal growth and inducing unusual crystal habits. We have performed experiments on the inhibition of ice crystal growth in solutions containing AFGP and PVP under standardized conditions, and find that the homogeneous nucleation and crystallization rates are sensitive to low concentrations of both substances, but AFGP is remarkably effective at inhibiting ice crystal growth.
Are Wet-Induced Wrinkled Fingers Primate Rain Treads?
Venue: Brain Behavior and Evolution

Wet fingers and toes eventually wrinkle, and this is commonly attributed by lay opinion to local osmotic reactions. However, nearly a century ago surgeons observed that no wrinkling occurs if a nerve to the finger has been cut. Here we provide evidence that, rather than being an accidental side effect of wetness, wet-induced wrinkles have been selected to enhance grip in wet conditions. We show that their morphology has the signature properties of drainage networks, enabling efficient removal of water from the gripped surface.
Shark-skin surfaces for fluid-drag reduction in turbulent flow: a review
Venue: Philosophical Transactions of the Royal Society A

The skin of fast-swimming sharks exhibits riblet structures aligned in the direction of flow that are known to reduce skin friction drag in the turbulent-flow regime. Structures have been fabricated for study and application that replicate and improve upon the natural shape of the shark-skin riblets, providing a maximum drag reduction of nearly 10 per cent. Mechanisms of fluid drag in turbulent flow and riblet-drag reduction theories from experiment and simulation are discussed. A review of riblet-performance studies is given, and optimal riblet geometries are defined. A survey of studies experimenting with riblet-topped shark-scale replicas is also given. A method for selecting optimal riblet dimensions based on fluid-flow characteristics is detailed, and current manufacturing techniques are outlined. Due to the presence of small amounts of mucus on the skin of a shark, it is expected that the localized application of hydrophobic materials will alter the flow field around the riblets in some way beneficial to the goals of increased drag reduction.
Auditory Spatial Acuity Approximates the Resolving Power of Space-Specific Neurons
Venue: PLOS ONE

The relationship between neuronal acuity and behavioral performance was assessed in the barn owl (Tyto alba), a nocturnal raptor renowned for its ability to localize sounds and for the topographic representation of auditory space found in the midbrain. We measured discrimination of sound-source separation using a newly developed procedure involving the habituation and recovery of the pupillary dilation response. The smallest discriminable change of source location was found to be about two times finer in azimuth than in elevation. Recordings from neurons in its midbrain space map revealed that their spatial tuning, like the spatial discrimination behavior, was also better in azimuth than in elevation by a factor of about two. Because the PDR behavioral assay is mediated by the same circuitry whether discrimination is assessed in azimuth or in elevation, this difference in vertical and horizontal acuity is likely to reflect a true difference in sensory resolution, without additional confounding effects of differences in motor performance in the two dimensions. Our results, therefore, are consistent with the hypothesis that the acuity of the midbrain space map determines auditory spatial discrimination.
Actuation systems in plants as prototypes for bioinspired devices
Venue: Philosophical Transactions of the Royal Society A

Plants have evolved a multitude of mechanisms to actuate organ movement. The osmotic influx and efflux of water in living cells can cause a rapid movement of organs in a predetermined direction. Even dead tissue can be actuated by a swelling or drying of the plant cell walls. The deformation of the organ is controlled at different levels of tissue hierarchy by geometrical constraints at the micrometre level (e.g. cell shape and size) and cell wall polymer composition at the nanoscale (e.g. cellulose fibril orientation). This paper reviews different mechanisms of organ movement in plants and highlights recent research in the field. Particular attention is paid to systems that are activated without any metabolism. The design principles of such systems may be particularly useful for a biomimetic translation into active technical composites and moving devices.
Friction behavior of a microstructured polymer surface inspired by snake skin
Venue: Beilstein Journal of Nanotechnology

The aim of this study was to understand the influence of microstructures found on ventral scales of the biological model, Lampropeltis getula californiae, the California King Snake, on the friction behavior. For this purpose, we compared snake-inspired anisotropic microstructured surfaces to other microstructured surfaces with isotropic and anisotropic geometry. To exclude that the friction measurements were influenced by physico-chemical variations, all friction measurements were performed on the same epoxy polymer. For frictional measurements a microtribometer was used. Original data were processed by fast Fourier transformation (FFT) with a zero frequency related to the average friction and other peaks resulting from periodic stick-slip behavior. The data showed that the specific ventral surface ornamentation of snakes does not only reduce the frictional coefficient and generate anisotropic frictional properties, but also reduces stick-slip vibrations during sliding, which might be an adaptation to reduce wear. Based on this extensive comparative study of different microstructured polymer samples, it was experimentally demonstrated that the friction-induced stick-slip behavior does not solely depend on the frictional coefficient of the contact pair.
Ultrastructure of the thoracic dorso‐medial field (TDM) in the elytra‐to‐body arresting mechanism in Tenebrionid Beetles (Coleoptera: Tenebrionidae)
Venue: Journal of Morphology

Beetles with flying ability lock their elytra (forewings) to the thorax or/and abdomen using complex locking devices. These structures are often supplemented with microtrichia fields of the inner surface of the elytra and adjacent parts of the pterothorax. The present study provides information about the ultrastructure of microtrichia of the dorso‐medial fields of the thorax (TDM) in tenebrionid beetles (Tribolium castaneum, Zophobas rugipes). Epidermal cells located under the TDM field contain large electron‐lucent vesicles connected to rough endoplasmic reticulum. Microtrichia and underlying cuticle of the TDM have a high density of pore channels, which are responsible for transport of an epidermal secretion onto the TDM surface. In order to show the presence of the secretion on the cuticle surface, TDM fields of air‐dried specimens were compared with those in specimens after two treatments, such as (1) dehydration in ethanol and acetone, and (2) dental‐wax‐cast technique applied to living beetles. This revealed the presence of the nonvolatile film on the intact microtrichial surface. Possible functions of this film are suggested to be (1) the increase of adhesive forces in the contact area and (2) providing soft coupling and release of two corresponding parts of the elytra‐locking device.  1999.
Anatomical significance of the hygrochastic movement in Anastatica hierochuntica.
Venue: Annals of Botany

Unlike the dispersal mechanisms of many desert plants, the whole dead skeleton of Anastatica hierochuntica is involved in seed dispersal and preservation. This process depends on the hygrochastic nature of the lignified conducting tissue that bends when dry and straightens under wet conditions. An anatomical interpretation of this mechanical movement was investigated.



An anatomical study of the stem was conducted on the juvenile plants raised under different water treatments and on the branch-orders of adult A. hierochuntica size-classes.



In the juvenile stem of A. hierochuntica, the area of cortex, conducting tissue and pith increased with water availability. However, the hydraulic conductance decreased, resulting in a better withdrawal of water in water-stressed plants. The anatomical investigation of the hygrochastic mechanism revealed an asymmetric distribution of the cortical tissues, with the conducting tissues of the stem of juvenile and adult plants being larger in the lower side. The hydraulic conductance was better in the basal and middle branch-orders than the terminal ones, permitting better conductance of water to the subsequent branch-orders.



The lignified conducting tissue of the whole stem, having a hygrochastic nature, controls the movement of the branches. The greater amount of conducting tissue associated with a higher density of wide xylem vessels was observed in the lower side of the stem as compared with the upper side. Consequently, the conducting tissue in the lower side of the stem was suggested to be more effective in the opening process of the curled dry branches through better and more rapid conductance of water. Alternatively, due to the few narrow xylem vessels in the upper side of the stem, it was likely that the conducting tissue in the upper side is more effective in the closing process by providing more rapid drying. The mechanical rise of water and the related hygrochastic efficiency were maximized in the basal and middle branch-orders that are mostly involved in the mechanical movement.
Food dissemination in ants: robustness of the trophallactic network against resource quality
Venue: The Journal of Experimental Biology

Insect societies are often composed of many individuals, achieving collective decisions that depend on environmental and colonial characteristics. For example, ants are able to focus their foraging effort on the most rewarding food source. While this phenomenon is well known, the link between the food source quality and the intranidal food dissemination networks and its dynamics has been neglected. Here, we analysed the global dynamics of food dissemination in Camponotus cruentatus workers, after feeding on a low (0.1 mol l−1) or on a high (1 mol l−1) sucrose concentration food source. We also analysed the trophallaxis activity at the individual level and built the complete network of trophallaxis. The results reveal that the dynamics of food dissemination and the structure of the trophallaxis network are robust and independent of the food concentration. We discuss these results in the light of recent advances in the study of efficiency in food management in ants.  Ants show a robust network of food dissemination that is not dependent on the quality of the food.
Cold-blooded snipers: thermal independence of ballistic tongue projection in the salamander Hydromantes platycephalus.
Venue: Journal of Experimental Zoology

Plethodontid salamanders of the genus Hydromantes capture prey using the most extreme tongue projection among salamanders, and can shoot the tongue a distance of 80% of body length in less than 20 msec. The tongue skeleton is projected from the body via an elastic-recoil mechanism that decouples muscle contraction from tongue projection, amplifying muscle power tenfold. We tested the hypothesis that the elastic-recoil mechanism also endows tongue projection with low thermal dependence by examining the kinematics and dynamics of tongue projection in Hydromantes platycephalus over a range of body temperatures (2-24°C). We found that H. platycephalus maintained tongue-projection performance over the tested temperature range and that tongue projection showed thermal independence (Q(10) values of 0.94-1.04) of all performance parameters including projection distance, average velocity, and peak instantaneous values of velocity, acceleration, and power. Nonelastic, muscle-powered tongue retraction, in contrast, responded to temperature changes significantly differently than elastic tongue projection; performance parameters of retraction displayed thermal dependence typical of muscle-powered movement (Q(10) values of 1.63-4.97). These results reveal that the elastic-recoil mechanism liberates tongue projection from the effects of temperature on muscle contractile rates. We suggest that relative thermal independence is a general characteristic of elastic-recoil mechanisms and may promote the evolution of these mechanisms in ectothermic animals.
Biofouling: lessons from nature
Venue: Philosophical Transactions of the Royal Society A

Biofouling is generally undesirable for many applications. An overview of the medical, marine and industrial fields susceptible to fouling is presented. Two types of fouling include biofouling from organism colonization and inorganic fouling from non-living particles. Nature offers many solutions to control fouling through various physical and chemical control mechanisms. Examples include low drag, low adhesion, wettability (water repellency and attraction), microtexture, grooming, sloughing, various miscellaneous behaviours and chemical secretions. A survey of nature's flora and fauna was taken in order to discover new antifouling methods that could be mimicked for engineering applications. Antifouling methods currently employed, ranging from coatings to cleaning techniques, are described. New antifouling methods will presumably incorporate a combination of physical and chemical controls.
A Visual Pathway Links Brain Structures Active during Magnetic Compass Orientation in Migratory Birds
Venue: PLOS ONE

The magnetic compass of migratory birds has been suggested to be light-dependent. Retinal cryptochrome-expressing neurons and a forebrain region, “Cluster N”, show high neuronal activity when night-migratory songbirds perform magnetic compass orientation. By combining neuronal tracing with behavioral experiments leading to sensory-driven gene expression of the neuronal activity marker ZENK during magnetic compass orientation, we demonstrate a functional neuronal connection between the retinal neurons and Cluster N via the visual thalamus. Thus, the two areas of the central nervous system being most active during magnetic compass orientation are part of an ascending visual processing stream, the thalamofugal pathway. Furthermore, Cluster N seems to be a specialized part of the visual wulst. These findings strongly support the hypothesis that migratory birds use their visual system to perceive the reference compass direction of the geomagnetic field and that migratory birds “see” the reference compass direction provided by the geomagnetic field.
Plasticity in light reactions of photosynthesis for energy production and photoprotection.
Venue: Journal of Experimental Botany

Plant photosynthesis channels some of the most highly reactive intermediates in biology, in a way that captures a large fraction of their energy to power the plant. A viable photosynthetic apparatus must not only be efficient and robust machinery, but also well integrated into the plant's biochemical and physiological networks. This requires flexibility in its responses to the dramatically changing environmental conditions and biochemical demands. First, the output of the energy-storing light reactions must match the demands of plant metabolism. Second, regulation of the antenna must be flexible to allow responses to diverse challenges that could result in excess light capture and subsequent photoinhibition. Evidence is presented for the interplay of two types of mechanistic flexibility, one that modulates the relative sensitivity of antenna down-regulation to electron flow, and the other, which primarily modulates the output ratio of ATP/NADPH, but also contributes to down-regulation.
Hemozoin: oil versus water.
Venue: Parasitology International

Because the quinolines inhibit heme crystallization within the malaria parasite much work has focused on mechanism of formation and inhibition of hemozoin. Here we review the recent evidence for heme crystallization within lipids in diverse parasites and the new implications of a lipid site of crystallization for drug targeting. Within leukocytes hemozoin can generate toxic radical lipid metabolites, which may alter immune function or reduce deformability of uninfected erythrocytes.
Vertical jumping in Galago senegalensis: the quest for an obligate mechanical power amplifier
Venue: Philosophical Transactions of the Royal Society B

Bushbabies ( Galago senegalensis ) are renowned for their phenomenal jumping capacity. It was postulated that mechanical power amplification must be involved. Dynamic analysis of the vertical jumps performed by two bushbabies confirms the need for a power amplifier. Inverse dynamics coupled to a geometric musculo–skeletal model were used to elucidate the precise nature of the mechanism powering maximal vertical jumps. Most of the power required for jumping is delivered by the vastus muscle–tendon systems (knee extensor). Comparison with the external joint–powers revealed, however, an important power transport from this extensor (about 65%) to the ankle and the midfoot via the bi–articular calf muscles. Peak power output likely implies elastic recoil of the complex aponeurotic system of the vastus muscle. Patterns of changes in length and tension of the muscle–tendon complex during different phases of the jump were found which provide strong evidence for substantial power amplification (times 15). It is argued here that the multiple internal connective tissue sheets and attachment structures of the well–developed bundles of the vastus muscle become increasingly stretched during preparatory crouching and throughout the extension phase, except for the last 13 ms of the push–off (i.e. when power requirements peak). Then, tension in the knee extensors abruptly falls from its maximum, allowing the necessary fast recoil of the tensed tendon structures to occur.
Functional Dorsoventral Symmetry in Relation to Lift-Based Swimming in the Ocean Sunfish Mola mola
Venue: PLOS ONE

The largest (up to 2 tons) and a globally distributed teleost—the ocean sunfish Mola mola—is commonly regarded as a planktonic fish because of its unusual shape including absence of caudal fin. This common view was recently questioned because the horizontal movements of the ocean sunfish tracked by acoustic telemetry were independent of ocean currents. However, direct information regarding their locomotor performance under natural conditions is still lacking. By using multi-sensor tags, we show that sunfish indeed swam continuously with frequent vertical movements at speeds of 0.4–0.7 m s–1, which is similar to the records of other large fishes such as salmons, marlins, and pelagic sharks. The acceleration data revealed that they stroked their dorsal and anal fins synchronously (dominant frequency, 0.3–0.6 Hz) to generate a lift-based thrust, as penguins do using two symmetrical flippers. Morphological studies of sunfish (mass, 2–959 kg) showed that the dorsal and anal fins had similar external (symmetrical shape and identical area) and internal (identical locomotory muscle mass) features; however, the muscle shape differed markedly. We conclude that ocean sunfish have functional dorsoventral symmetry with regards to the non-homologous dorsal and anal fins that act as a pair of vertical hydrofoils. Although sunfish lack a swimbladder, we found that they are neutrally buoyant independent of depth because of their subcutaneous gelatinous tissue that has low density and is incompressible. Efficient lift-based swimming in conjunction with neutral buoyancy enables sunfish to travel long distances both horizontally and vertically.