nils-herrmann/clean_scirepeval huggingface dataset:
Thermal physiology and energetics in male desert hamsters (Phodopus roborovskii) during cold acclimation
Venue: Journal of Comparative Physiology B

The adjustments in thermal physiology and energetics were investigated in male desert hamsters (Phodopus roborovskii) which were acclimated to 5°C for 4 weeks. Mean core body temperature in cold acclimated animals decreased by 0.21°C compared with controls. Further analysis revealed that the decrease mainly occurred in the scotophase, while in the photophase core body temperature remained constant during the whole cold acclimation. Thermogenic capacity, represented by resting metabolic rate and nonshivering thermogenesis increased in cold acclimated hamsters from initial values of 1.38 ± 0.05 and 5.32 ± 0.30 to 1.77 ± 0.08 and 8.79 ± 0.31 mlO2 g−1 h−1, respectively. After cold acclimation, desert hamsters maintained a relative stable body mass of 21.7 ± 0.1 g very similar to the controls kept at 23°C (21.8 ± 0.1 g). The mean values of food intake and digestible energy (metabolisable energy) in cold acclimated hamsters were 5.3 ± 0.1 g day−1 and 76.3 ± 0.9 kJ day−1 (74.8 ± 0.9), respectively, which were significantly elevated by 76.7 and 80.4% compared to that in control group. The apparent digestibility was 81.0 ± 0.3% in cold acclimated animals which was also higher than the 79.7 ± 0.2% observed in controls. This increase corresponded with adaptive adjustments in morphology of digestive tracts with 20.2 and 36.8% increases in total length and wet mass, respectively. Body fat mass and serum leptin levels in cold acclimated hamsters decreased by 40.7 and 67.1%, respectively. The wheel running turns and the onset of wheel running remained unchanged. Our study indicated that desert hamsters remained very active during cold acclimation and displayed adaptive changes in thermal physiology and energy metabolism, such as enhanced thermogenic and energy processing capacities.
Hibernation in warm hibernacula by free-ranging Formosan leaf-nosed bats, Hipposideros terasensis, in subtropical Taiwan
Venue: Journal of Comparative Physiology B

The subtropical Formosan leaf-nosed bats, Hipposideros terasensis (Hipposideridae), show little activity during winter. It has never been determined whether in winter they exhibit hibernation and multi-day periods of low body temperature. The objectives of this study were to understand the winter activity pattern of H. terasensis and to examine whether it enters hibernation during winter. We monitored the skin temperature (Tsk) of nine free-ranging H. terasensis by attaching temperature-sensitive transmitters during the winters of 2007–2008 and 2008–2009. The results showed that H. terasensis entered hibernation from late December to early March. H. terasensis, however, differs from temperate hibernating bats in several ways: (1) it is capable of hibernation at roost temperature (Tr) and Tsk > 20°C; (2) hibernation at high Tr and Tsk does not lead to a relatively high arousal frequency; and (3) adults do not increase body mass in autumn prior to hibernation. To test the hypothesis that H. terasensis feeds frequently during the hibernation period to compensate for the high energetic demands of hibernating in warm hibernacula, we recorded the number and timing of bats that emerged from and entered into a hibernaculum, which contained more than 1,000 bats. From 30 December 2007 to 29 February 2008, an average of only 8.4 bats (<1%) per night (29 nights) emerged from the hibernaculum. Adult bats lost an average of 13–14% of body mass during an approximately 70-day hibernation period. We suggest that H. terasensis might have remarkably low torpid metabolic rates during hibernation.
Muscle plasticity in hibernating ground squirrels (Spermophilus lateralis) is induced by seasonal, but not low-temperature, mechanisms
Venue: Journal of Comparative Physiology B

During hibernation, ground squirrels (Spermophilus lateralis) show unusually altered expression of skeletal muscle myosin heavy-chains. Some muscle groups show transitions from fast to slower myosin isoforms despite atrophy, which are not predicted from other mammalian studies of inactivity. We measure myosin protein and mRNA expression, and the mRNA expression of genes important in atrophy and metabolism in a time-course of muscle plasticity prior to, and during extended hibernation. We also investigate the role of strictly low-temperature processes by comparing torpid individuals at 20 and 4°C. Shifts in myosin isoform expression happen at both temperatures, before the onset of torpor, or within the first month of torpor, in all muscles demonstrating isoform remodeling. Skeletal muscle atrophy is greatly attenuated in this hibernating species, and even may be absent in some muscles. When present, atrophy develops early in hibernation, and does not progress in the final 3 months of torpor. Myostatin mRNA is down-regulated 50–75% in the soleus and diaphragm, two important muscles that are spared of atrophy. The transcription factor FOXO1, which spurs proteolytic degradation of contractile proteins through regulation of the ubiquitin ligase MAFbx, is also generally down-regulated, and may contribute to reduced atrophy. Hypoxia-inducible factor (HIF-1α) mRNA expression was reduced 50% in some muscles, while elevated more than 300% in others. Our collective findings most strongly support early, seasonal, phenotype changes in skeletal muscles which are not uniquely confined to, or prompted by, torpor at 4°C. Such seasonal control of myosin would be a novel mechanism in mammalian skeletal muscle, which otherwise is most susceptible to mechanical loading and limb-activity patterns.
Environment and feeding change the ability of heart rate to predict metabolism in resting Steller sea lions (Eumetopias jubatus)
Venue: Journal of Comparative Physiology B

The ability to use heart rate (fh) to predict oxygen consumption rates ($$ \dot{V}_{{{\text{O}}_{2} }} $$) in Steller sea lions and other pinnipeds has been investigated in fasting animals. However, it is unknown whether established fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ relationships hold under more complex physiological situations, such as when animals are feeding or digesting. We assessed whether fh could accurately predict $$ \dot{V}_{{{\text{O}}_{2} }} $$ in trained Steller sea lions while fasting and after being fed. Using linear mixed-effects models, we derived unique equations to describe the fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ relationship for fasted sea lions resting on land and in water. Feeding did not significantly change the fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ relationship on land. However, Steller sea lions in water displayed a different fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ relationship after consuming a 4-kg meal compared with the fasting condition. Incorporating comparable published fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ data from Steller sea lions showed a distinct effect of feeding after a 6-kg meal. Ultimately, our study illustrated that both feeding and physical environment are statistically relevant when deriving $$ \dot{V}_{{{\text{O}}_{2} }} $$ from telemetered fh, but that only environment affects the practical ability to predict metabolism from fh. Updating current bioenergetic models with data gathered using these predictive fh:$$ \dot{V}_{{{\text{O}}_{2} }} $$ equations will yield more accurate estimates of metabolic rates of free-ranging Steller sea lions under a variety of physiological, behavioral, and environmental states.
The communicative potential of bat echolocation pulses
Venue: Journal of Comparative Physiology A

Ecological constraints often shape the echolocation pulses emitted by bat species. Consequently some (but not all) bats emit species-specific echolocation pulses. Because echolocation pulses are often intense and emitted at high rates, they are potential targets for eavesdropping by other bats. Echolocation pulses can also vary within species according to sex, body size, age, social group and geographic location. Whether these features can be recognised by other bats can only be determined reliably by playback experiments, which have shown that echolocation pulses do provide sufficient information for the identification of sex and individual in one species. Playbacks also show that bats can locate conspecifics and heterospecifics at foraging and roost sites by eavesdropping on echolocation pulses. Guilds of echolocating bat species often partition their use of pulse frequencies. Ecology, allometric scaling and phylogeny play roles here, but are not sufficient to explain this partitioning. Evidence is accumulating to support the hypothesis that frequency partitioning evolved to facilitate intraspecific communication. Acoustic character displacement occurs in at least one instance. Future research can relate genetic population structure to regional variation in echolocation pulse features and elucidate those acoustic features that most contribute to discrimination of individuals.
Pheromones and signature mixtures: defining species-wide signals and variable cues for identity in both invertebrates and vertebrates
Venue: Journal of Comparative Physiology A

Pheromones have been found in species in almost every part of the animal kingdom, including mammals. Pheromones (a molecule or defined combination of molecules) are species-wide signals which elicit innate responses (though responses can be conditional on development as well as context, experience, and internal state). In contrast, signature mixtures, in invertebrates and vertebrates, are variable subsets of molecules of an animal’s chemical profile which are learnt by other animals, allowing them to distinguish individuals or colonies. All signature mixtures, and almost all pheromones, whatever the size of molecules, are detected by olfaction (as defined by receptor families and glomerular processing), in mammals by the main olfactory system or vomeronasal system or both. There is convergence on a glomerular organization of olfaction. The processing of all signature mixtures, and most pheromones, is combinatorial across a number of glomeruli, even for some sex pheromones which appear to have ‘labeled lines’. Narrowly specific pheromone receptors are found, but are not a prerequisite for a molecule to be a pheromone. A small minority of pheromones act directly on target tissues (allohormone pheromones) or are detected by non-glomerular chemoreceptors, such as taste. The proposed definitions for pheromone and signature mixture are based on the heuristic value of separating these kinds of chemical information. In contrast to a species-wide pheromone, there is no single signature mixture to find, as signature mixtures are a ‘receiver-side’ phenomenon and it is the differences in signature mixtures which allow animals to distinguish each other.
Thermal acclimation, mitochondrial capacities and organ metabolic profiles in a reptile (Alligator mississippiensis)
Venue: Journal of Comparative Physiology B

Reptiles thermoregulate behaviourally, but change their preferred temperature and the optimal temperature for performance seasonally. We evaluated whether the digestive and locomotor systems of the alligator show parallel metabolic adjustments during thermal acclimation. To this end, we allowed juvenile alligators to grow under thermal conditions typical of winter and summer, providing them with seasonally appropriate basking opportunities. Although mean body temperatures of alligators in these groups differed by approximately 10°C, their growth and final anatomic status was equivalent. While hepatic mitochondria isolated from cold-acclimated alligators had higher oxidative capacities at 30°C than those from warm-acclimated alligators, the capacities did not differ at 20°C. Cold acclimation decreased maximal oxidative capacities of muscle mitochondria. For mitochondria from both organs and acclimation groups, palmitate increased oligomycin-inhibited respiration. GDP addition reduced palmitate-uncoupled rates more in liver mitochondria from warm- than cold-acclimated alligators. In muscle mitochondria, carboxyatractyloside significantly reduced palmitate-uncoupled rates. This effect was not changed by thermal acclimation. The aerobic capacity of liver, skeletal muscle and duodenum, as estimated by activities of cytochrome c oxidase (COX), increased with cold acclimation. At acclimation temperatures, the activities of COX and citrate synthase (CS) in these organs were equivalent. By measuring COX and CS in isolated mitochondria and tissue extracts, we estimated that cold acclimation did not change the mitochondrial content in liver, but increased that of muscle. The thermal compensation of growth rates and of the aerobic capacity of the locomotor and digestive systems suggests that alligators optimised metabolic processes for the seasonally altered, preferred body temperature. The precision of this compensatory response exceeds that typically shown by aquatic ectotherms whose body temperatures are at the mercy of their habitat.
Differential changes of regional cerebral blood flow in two bat species during induced hypothermia measured by perfusion-weighted magnetic resonance imaging
Venue: Journal of Comparative Physiology B

Cerebral blood flow (CBF) of a vespertilionid bat, Miniopterus fuliginosus (M. f.), and a pteropodid bat, Rousettus leschenaultii (R. l.) was measured non-invasively during induced hypothermia (37–10°C for M. f. and 37–24°C for R. l.) with perfusion-weighted magnetic resonance imaging. In both species, the average CBF was found to decrease with rectal temperature. The patterns of hypothermia-induced regional CBF changes, however, were different between the two species. In the pteropodid bat, the extent of CBF decrease at lower rectal temperature was similar in the cortex and thalamus, resulting in an unchanged thalamus/cortex CBF ratio. In contrast, the thalamus/cortex CBF ratio in the vespertilionid species increased progressively with decreasing rectal temperature (1.52 ± 0.14 at 37 ± 1°C vs. 2.28 ± 0.29 at 10 ± 1°C). These results suggest that the manner in which the two bat species cope with low body temperature may be reflected by a differential CBF regulation between thalamus and cortex.
Torpor patterns, arousal rates, and temporal organization of torpor entry in wildtype and UCP1-ablated mice
Venue: Journal of Comparative Physiology B

In eutherian mammals, uncoupling protein 1 (UCP1) mediated non-shivering thermogenesis from brown adipose tissue (BAT) provides a mechanism through which arousal from torpor and hibernation is facilitated. In order to directly assess the magnitude by which the presence or absence of UCP1 affects torpor patterns, rewarming and arousal rates within one species we compared fasting induced torpor in wildtype (UCP1+/+) and UCP1-ablated mice (UCP−/−). Torpor was induced by depriving mice of food for up to 48 h and by a reduction of ambient temperature (Ta) from 30 to 18°C at four different time points after 18, 24, 30 and 36 h of food deprivation. In most cases, torpor bouts occurred within 20 min after the switch in ambient temperature (30–18°C). Torpor bouts expressed during the light phase lasted 3–6 h while significantly longer bouts (up to 16 h) were observed when mice entered torpor during the dark phase. The degree of hypometabolism (5–22 ml h−1) and hypothermia (19.5–26.7°C) was comparable in wildtype and UCP1-ablated mice, and both genotypes were able to regain normothermia. In contrast to wildtype mice, UCP1-ablated mice did not display multiple torpor bouts per day and their peak rewarming rates from torpor were reduced by 50% (UCP1+/+: 0.24 ± 0.08°C min−1; UCP1−/−: 0.12 ± 0.04°C min−1). UCP1-ablated mice therefore took significantly longer to rewarm from 25 to 32°C (39 vs. 70 min) and required 60% more energy for this process. Our results demonstrate the energetic benefit of functional BAT for rapid arousal from torpor. They also suggest that torpor entry and maintenance may be dependent on endogenous rhythms.
Oxidative damage and plasma antioxidant capacity in relation to body size, age, male sexual traits and female reproductive performance in the collared flycatcher (Ficedula albicollis)
Venue: Journal of Comparative Physiology B

The study of oxidative stress is a potential tool for studying the functional interactions among life history traits, sexual traits and physiological status in animals. In this study, we investigated relationships between measures of plasma oxidative status and male sexual traits, female reproductive investment and three other life history traits, in a wild population of collared flycatchers (Ficedula albicollis). Flycatcher males with a larger white forehead patch had higher level of plasma antioxidant capacity. For females, clutch size was not associated with plasma oxidative status, but egg size was positively correlated with antioxidant capacity. The relationship between age and levels of plasma oxidative damage remains controversial in this species: young female flycatchers showed higher levels of hydroperoxides compared to antioxidants, whereas age did not predict oxidative status of males. Males had higher levels of oxidative damage than females, although the concentration of antioxidant compounds was similar between the sexes. Females that mated with more ornamented males had higher plasma antioxidant capacity. Our results suggest that, for males and females, greater investment in sexual signal and reproduction, respectively, does not reduce the capacity for self-maintenance or avoidance of oxidative stress. Finally, our data support indirectly the occurrence of assortative mating in our species, since females with higher plasma antioxidant capacity mated with more ornamented males.
The energy cost of embryonic development in fishes and amphibians, with emphasis on new data from the Australian lungfish, Neoceratodus forsteri
Venue: Journal of Comparative Physiology B

The rate of oxygen consumption throughout embryonic development is used to indirectly determine the ‘cost’ of development, which includes both differentiation and growth. This cost is affected by temperature and the duration of incubation in anamniote fish and amphibian embryos. The influences of temperature on embryonic development rate, respiration rate and energetics were investigated in the Australian lungfish, Neoceratodus forsteri, and compared with published data. Developmental stage and oxygen consumption rate were measured until hatching, upon which wet and dry gut-free masses were determined. A measure of the cost of development, the total oxygen required to produce 1 mg of embryonic dry tissue, increased as temperature decreased. The relationship between the oxygen cost of development (C, ml mg−1) and dry hatchling mass (M, mg) in fishes and amphibians is described by C = 0.30 M0.22 ± 0.13 (95% CI), r2 = 0.52. The scaling exponent indicates that the cost of embryonic development increases disproportionally with increasing hatchling mass. At 15 and 20°C, N. forsteri cost of development is significantly lower than the regression mean for all species, and at 25°C is lower than the allometrically scaled data set. Unexpectedly, incubation of N. forsteri is long, despite natural development under relatively warm conditions, and may be related to a large genome size. The low cost of development may be associated with construction of a rather sluggish fish with a low capacity for aerobic metabolism. The metabolic rate is lower in N. forsteri hatchlings than in any other fishes or amphibians at the same temperature, which matches the extremely low aerobic metabolic scope of the juveniles.
A detailed paraxial schematic eye for the White Leghorn chick
Venue: Journal of Comparative Physiology A

We studied the normal ocular development of the chick (Gallus gallus domesticus, White Leghorn) up to 15 days of age using both longitudinal and cross-sectional methods. The change in refractive error, corneal curvature and axial ocular distances were used to construct schematic eyes. Equations are presented which allow prediction of refractive error changes associated with changes in vitreous chamber depth. The mean refractive error was +3.2 D at hatching, which reduced by 66% over the first 3 days and stabilized by 11 days of age. The lens thickened and the anterior chamber deepened from hatching, but vitreal elongation and corneal flattening were delayed until after the first 3 days, suggesting that normal eye growth may be initially inhibited or inactive during an initial emmetropization period, and subsequently activated in response to myopic defocus arising from the continually expanding lens. Finally, when compared with published data on other chick strains, we find differences in the degree of hyperopia at hatching due to differences in lens thickness. However, the rate of ocular and vitreal expansion and the developmental changes in corneal power are similar, making the schematic eyes presented here generally applicable to different strains of chickens.
Morpho-functional identification of abdominal olfactory receptors in the midge Culicoides imicola
Venue: Journal of Comparative Physiology A

The aim of the present study was to examine the presence and the possible role of abdominal olfactory sensilla in Culicoides imicola mediating the search for potential hosts and oviposition sites, by means of a morphological, electrophysiological and behavioural approach. The results reported here show that in the midge C. imicola the whole abdomen, comprising the ovipositor, are endowed with three morphotypes of multiporous sensilla that display olfactory sensitivity towards kairomones related to the host-animal skin such as l-(+)-lactic acid and 1-octen-3-ol, to the host-animal urine such as 3-ethylphenol and 4-propylphenol, and to the potent attractant sesame seed oil. Electrophysiological and behavioural data for the first time suggest in the midge the involvement of abdominal olfactory structures in the choice of the oviposition sites and allow in discussing their possible role in the host-animal localisation. Field experiments showed that light traps baited with the aforementioned compounds elicited a stronger degree of attractiveness on midges with respect to the unbaited traps (control), although to a different extent. Our results, while implying a number of considerations concerning the role of molecules tested as kairomones, also suggest their use in the control of the midge C. imicola population.
Sound transmission and directional hearing in field crickets: neurophysiological studies outdoors
Venue: Journal of Comparative Physiology A

Many studies provide detailed behavioural and neurophysiological information on the ability of crickets to localize a sound source under ideal acoustic conditions, but very little is known about how they perform in real habitats. We investigated directional hearing of crickets in the field using a neurophysiological approach, by recording the activity of the two prominent, bilaterally homologous AN1 neurons simultaneously in a cricket’s habitat. The discharge and latency differences of the pair of neurons in response to conspecific chirps presented at different distances and directions were taken as a measure of directional information. The maximum hearing distance differed between individuals and weather conditions from 1 to 15 m (mean 9.2 m). Although the AN1 activity generally decreased with increasing distance, large fluctuations in the magnitude of responses occurred with distance, indicating that the intensity gradient over distance is often irregular. The directional information provided in the discharge differences of the two neurons also varied with distance. Again, there was no simple directional gradient on the transmission channel; rather, with decreasing distance to the source there were receiver locations providing suprathreshold responses, but no directional information. The consequences for the ability of field crickets to communicate acoustically close to the ground are discussed.