nils-herrmann/clean_scirepeval huggingface dataset:
Internal load-sharing in the human passive lumbar spine: Review of in vitro and finite element model studies.
Venue: Journal of biomechanics

Human lumbar motion segment is composed of various components with distinct contributions to its gross mechanical response. By employing experimental and computational approaches, many studies have investigated the relative role of each component as well as effects of various factors such as boundary-initial conditions, load magnitude-combination-direction, load temporal regime, preload, posture, degeneration, failures and surgical interventions on load-sharing. This paper reviews and critically discusses the relevant findings of in vitro and finite element model studies on load-sharing in healthy, aged, degenerate and damaged human lumbar motion segments. Two systematic searches were performed in PubMed (October 2018 - March 2019) using three sets of concepts ("lumbar spine", "load-sharing" and "motion segment components") followed by a complementary generic search. The segment overall response as well as the relative role of its constituents are markedly influenced by alterations in resection sequence, boundary conditions, geometry, loading characteristics (rate, magnitude, combinations and preloads), disc hydration, bone quality, posture and time (creep and cyclic). Structural transection order affects both findings and conclusions not only in force-control protocols but also in displacement-control loading regimes. Disc degeneration, endplate fracture and surgical resections significantly alter load transmission in the lumbar spine. In summary, in vitro and finite element model studies have together substantially improved our understanding of functional biomechanics (load-sharing) of human lumbar spine in normal and perturbed conditions acting as invaluable complementary tools in clinical applications.
Force interactions between Yersiniae lipopolysaccharides and monoclonal antibodies: An optical tweezers study.
Venue: Journal of biomechanics

This article reports the force spectroscopy investigation of interactions between lipopolysaccharides (LPSs) of two species from Yersinia genus and complementary (or heterologous) monoclonal antibodies (mAbs). We have obtained the experimental data by optical trapping on the "sensitized polystyrene microsphere - sensitized glass substrate" model system at its approach - retraction in vertical plane. We detected non-specific interactions in low-amplitude areas on histograms mainly due to physicochemical properties of abiotic surface and specific interactions in complementary pairs "antigen - antibodies" in high-amplitude areas (100-120 pN) on histograms. The developed measurement procedure can be used for detection of rupture forces in other molecular pairs.
Effect of first order chemical reactions on the dispersion coefficient associated with laminar flow through fibrosis affected lung.
Venue: Journal of biomechanics

In this paper, we worked on the effective area average concentration and dispersion coefficient associated with the unsteady flow, to understand the dispersion in the fibrosis-affected lung. We assumed that the tube wall (i.e. alveolar or pulmonary capillary wall) is thicker than its normal size due to fibrosis and chemical species may go through linear first-order kinetic reactions, one is reversible phase exchange with the wall material and other is irreversible absorption into the tube wall. By considering diffusivity as a function of thickness, the dispersion can be calculated by the distribution of concentration of gas along a tube. Mathematical modeling is done by using diffusion equation; and effects of various dimensionless parameters e.g., the Damkohler number (DA), phase partitioning number (α), dimensionless absorption number (Γ), thickness and permeability of wall are observed. Numerical simulation shows that the diffusion rate through the respiratory wall is decreased significantly as the thickness of wall increases, while it increased with the increment in the porosity of wall, the concentration of species increased when the tube wall thickness increases; which cause reduction in the spread of the species; additionally, the dispersion coefficient achieves the steady-state values in a very short time when 0 < DA ⩽1 and absorption rate < 1, while for 1 < DA ⩽20 and absorption rate = 1 long time dispersion is achieved.
Chronic ankle instability patients exhibit higher variability in lower extremity joint-coupling variability during drop vertical jumps.
Venue: Journal of biomechanics

Chronic ankle instability (CAI) has been associated with biomechanical alterations during landing tasks. While joint coupling differences have been reported during gait in patients with CAI, there is no known research assessing joint coupling during a drop-vertical jumping (DVJ). Joint coupling variability measure may provide information on the sensorimotor health of these patients. The purpose of this study was to compare lower extremity joint coupling variability during a DVJ between patients with CAI and controls. Twenty-eight young, active individuals (CAI:n = 14, Control:n = 14) participated in the study. A 3D motion capture system was used to collect kinematics during 15 drop-vertical jump trials. A vector coding analysis was used to assess the variability in the following joint couples: knee sagittal-ankle frontal, knee sagittal-ankle sagittal, hip frontal-ankle frontal, and hip frontal-ankle sagittal. The CAI group had higher joint coupling variability in hip frontal-ankle sagittal, knee sagittal-ankle frontal and knee sagittal-ankle sagittal planes both prior to and following ground contact during the drop vertical jumps. These changes indicate potential adaptations to the constraint of CAI and the task of the DVJ. Higher variability may reflect an attempt by the subjects to explore alternate movement strategies or reflect poor sensorimotor control strategies. Clinicians should consider the challenges of DVJ during rehabilitation as they create a unique task constraint.
Anterior cruciate ligament transection of rabbits alters composition, structure and biomechanics of articular cartilage and chondrocyte deformation 2 weeks post-surgery in a site-specific manner.
Venue: Journal of biomechanics

Anterior cruciate ligament (ACL) injury often leads to post-traumatic osteoarthritis (OA) and articular cartilage degradation, changing biomechanics of the tissue and chondrocytes, and altering the fixed charged density (FCD) and collagen network. However, changes in these properties are not known at a very early time point after ACL rupture, but recognizing early changes might be crucial for successful intervention. We investigated the effects of ACL transection (ACLT) in rabbits on the site-specific biomechanical properties of articular cartilage and chondrocytes, FCD content and collagen network organization, two weeks post-surgery. Unilateral ACLT was performed in eight rabbits, and femoral condyles, tibial plateaus, femoral grooves and patellae were harvested from experimental and contralateral knee joints. An intact control group was used as a reference. We analyzed chondrocyte morphology under pre- and static loading, cartilage biomechanical properties, FCD content and collagen fibril orientation. ACLT caused FCD loss in the lateral and medial femoral condyle, lateral tibial plateau, femoral groove and patellar cartilage (p < 0.05). Minor changes in the collagen orientation occurred in the femoral groove and lateral and medial femoral condyle cartilage (p < 0.05). Cartilage stiffness was reduced in the lateral and medial femoral condyles, and chondrocyte biomechanics was altered in the lateral femoral condyle and patellar cartilage (p < 0.05). We observed loss of FCD from articular cartilage two weeks after ACLT at several joint locations. These changes may have led to decreased cartilage stiffness and altered cell deformation behavior, especially in the femoral condyles.
A new deep learning-based method for the detection of gait events in children with gait disorders: Proof-of-concept and concurrent validity.
Venue: Journal of biomechanics

The stance and swing phases of the gait cycle are defined by foot strike (FS) and foot off (FO). Accurate determination of these events is thus an essential component of 3D motion recordings processing. Several methods have been developed for the automatic detection of these events (based on the heuristics of 3D marker position, velocity and acceleration), however the results may be inaccurate due to the high variability that is intrinsic to pathological gait. For this reason, gait events are still commonly determined manually, which is a tedious process. Here we propose a new application (DeepEvent) of a long short term memory recurrent neural network for the automatic detection of gait events. The 3D position and velocity of the markers on the heel, toe and lateral malleolus were used by the network to determine FS and FO. The method was developed from 10526 FS and 9375 FO from 226 children. DeepEvent predicted FS within 5.5 ms and FO within 10.7 ms of the gold standard (automatic determination using force platform data) and was more accurate than common heuristic marker trajectory-based methods proposed in the literature and another deep learning method. A sensitivity analysis showed that DeepEvent mainly used the toe and heel markers (z-axis (longitudinal) position and velocity) at the beginning and end of gait cycle to predict FS, and the toe marker (x-axis (anterior/posterior) velocity and z-axis position and velocity) at around 60% of the gait cycle to predict FO.
Validation of a custom spine biomechanics simulator: A case for standardization.
Venue: Journal of biomechanics

Mechanical testing machines used in cadaveric spine biomechanics research vary between labs. It is a necessary first step to understand the capabilities and limitations in any testing machine prior to publishing experimental data. In this study, a reproducible protocol that uses a synthetic spine was developed and used to quantify the inherent rotation error and the ability to apply loads in a single physiologic plane (pure-moment) of a custom spine biomechanics simulator. Rotation error was evaluated by comparing data collected by the test machine and the data collected by an optical motion capture system. Pure-moment loading was assessed by comparing the out-of-plane loads to the primary plane load. Using synthetic functional spine units previously shown to have mechanics similar to the cadaveric human spine, the simulator was evaluated using a dynamic test protocol reflective of its future use in the study of cadaveric spine specimens. Rotation errors inherent in the test machine were <0.25° compared to motion capture. Out of plane loads were <4.0% of the primary plane load, which confirmed pure-moment loading. The authors suggest that a standard validation protocol for biomechanical spine testing machines is needed for transparency and accurate field-wide data interpretation and comparison. We offer recommendations based on the reproducible use of a synthetic spinal specimen for consideration.
Relationship between shear modulus and passive tension of the posterior shoulder capsule using ultrasound shear wave elastography: A cadaveric study.
Venue: Journal of biomechanics

Although shear wave elastography (SWE) has been used to indirectly measure passive tension in muscle tissues, it is unknown whether SWE can adequately evaluate passive tension in capsule tissues. This study investigated the relationship between the shear modulus and passive tension in the posterior shoulder capsule using SWE. Ten posterior middle and ten posterior inferior shoulder capsules were dissected from ten fresh-frozen cadavers; humeral head-capsule-glenoid specimens were created from each capsule. The humeral head and glenoid were immobilized with clamps in a custom-built device. Loads (0-400 g, in 25-g increments) were applied to each capsule via a pulley system; elasticity was simultaneously measured using SWE. The elasticity-load relationship of each tested capsule was analyzed by fitting a least-squares regression line to the data. Elasticity change due to creep or hysteresis effects was evaluated by comparing the elastic modulus for a 100-g load during and after the stepwise application of the loads. The observed relationship between the shear modulus and passive capsule tension was highly linear for all twenty tested capsules (p < 0.01). The mean coefficient of determination was 0.882 ± 0.075 and 0.901 ± 0.050 for the posterior middle and posterior inferior capsules, respectively. There was no difference in the shear modulus between the two 100-g load assessments for both the posterior middle (p = 0.205) and posterior inferior capsules (p = 0.161). Thus, SWE is a valid and useful method for indirectly evaluating the change in the passive tension under loading in specific posterior shoulder capsule.
Peak of neuromuscular activation and angle where it occurs during bench press exercise performed with different repetition number and duration in resistance trained individuals.
Venue: Journal of biomechanics

The present study compared neuromuscular activation, measured by surface electromyography (EMG) amplitude [measure by EMG peak (EMGPEAK)] and range of motion (ROM) where EMGPEAK occurred between two training protocols, matched by time under tension, but with a different number and duration of repetitions. Sixteen recreationally trained males performed 2 training protocols with 3 sets, 180 s of rest with 60% of one-repetition maximum(1RM) on the bench press performed in a Smith machine. Protocol A consisted of 6 repetitions with a repetition duration of 6 s and protocol B consisted of 12 repetitions with a repetition duration of 3 s. EMG activity of anterior deltoid, pectoralis major and triceps brachii muscles were recorded. The results showed a general higher EMG amplitude (regardless of the muscle) in protocol B (p = 0.010), and pectoral and triceps brachii consistently presented higher neuromuscular activation than anterior deltoid at both protocols (p = 0.007). Additionally, the ROM where EMGPEAK occurred in triceps brachii was in the middle of the concentric action (~50% of ROM), this occurred in the first half of the same action (~24% of ROM) in the other muscles. In conclusion, protocol B demonstrated an increased EMG amplitude over protocol A, although both protocols responded similarly by achieving the highest EMG amplitude at same ROM among the muscles analysed.
Fabrication and evaluation of a bilayer hydrogel-electrospinning scaffold prepared by the freeze-gelation method.
Venue: Journal of biomechanics

This study presents a bilayer structure as a skin scaffold comprised of an electrospun sheet layer made of polycaprolactone and polyvinil alcohol and a porous hydrogel layer made of chitosan and gelatin. The hydrogel layer was fabricated by employing the freeze-gelation technique. The bilayer structure was achieved by pouring the hydrogel solution on the electrospun sheet at the bottom of a mold followed by the freeze-gelation technique to obtain a porous structure in the hydrogel. The hydrogel and hydrogel-electrospun samples were characterized by scanning electron microscopy, swelling, tensile strength, in vitro and in vivo analyses. From a mechanical strength standpoint, the combination of hydrogel and electrospun layers produced 110 and 133% increases in mean tensile strength and elastic modulus values, respectively compared to the single layer hydrogel sample. While the results of swelling and cell proliferation tests did not yield significant differences between the two groups, the bilayer scaffold performed better considering the results of the in vivo analysis. It was also seen that there was a good connection between the two layers in the bilayer scaffold, making the necessary manipulations and clinical handling convenient.
Hamstring muscle-tendon unit lengthening and activation in instep and cut-off kicking.
Venue: Journal of biomechanics

Hamstring muscle strain injury is one of the most common injuries in sports involving sprinting and kicking. Studies examining hamstring kinematics and activations are rich for sprinting but lacking for kicking. The purpose of this study was to examine kinematics and activations of hamstring muscles in instep and cut-off kicking tasks frequently performed in soccer. Videographic and electromyographic (EMG) data were collected for 11 male soccer-majored college students performing the two kicking tasks. Peak hamstring muscle-tendon unit lengths, elongation velocities, and maximum linear envelop EMG data were identified and compared among hamstring muscles and between kicking tasks. Hamstring muscles exhibited activated elongations before and after the contact of the kicking foot with the ball. The muscle-tendon unit lengths peaked in the follow-through phase. The peak elongation velocity of the semimembranosus was significantly greater than that of the semitendinosus and biceps femoris (p = 0.001). The maximum linear envelop EMG of the biceps femoris was significantly greater than that of the semimembranosus (p = 0.026). The potential for hamstring injury exists in the follow-through phase of each kicking task. The increased hamstring muscle-tendon unit elongation velocities in kicking tasks may explain the more severe hamstring injuries in kicking compared to sprinting.
Short Communication: Determining the average attitude of a rigid body.
Venue: Journal of biomechanics

Three-dimensional angular kinematics exist on the surface of a unit hypersphere, therefore the average attitude cannot always be accurately computed by averaging Cardan angles. This study derives and evaluates a method for determining average body attitude, by exploiting the singular value decomposition of the average of a set of attitude matrices. To test the method 1000 criterion attitudes were determined, and for each attitude 10 noisy attitude matrices generated. The new method and the averaging of Cardan angles extracted from the 10 noisy attitude matrices were evaluated for their ability to estimate the criterion attitude. At low attitude variance the two approaches provided equivalent results, but with increasing attitude variance levels the new procedure was superior. The method provides superior estimates of average attitude compared with averaging Cardan angles, by accounting for the geometric distribution of rigid body attitudes on the surface of a unit hypersphere.
Changes in inertial parameters of the lower limb during the impact phase of dynamic tasks.
Venue: Journal of biomechanics

Mechanical analysis at the whole human body level typically assumes limbs are rigid bodies with fixed inertial parameters, however, as the human body consists mainly of deformable soft tissue, this is not the case. The aim of this study was to investigate changes in the inertial parameters of the lower limb during landing and stamping tasks using high frequency three-dimensional motion analysis. Seven males performed active and passive drop landings from 30 and 45 cm and a stamp onto a force plate. A sixteen-camera 750 Hz Vicon system recorded markers for standard rigid body analysis using inverse kinematics in Visual 3D and 7 × 8 and 7 × 9 marker arrays on the shank and thigh. Frame by frame segment volumes from marker arrays were calculated as a collection of tetrahedra using the Delaunay triangulation method in 3D and further inertial parameters were calculated using the method of Tonon (2004). Distance between the centres of mass (COM) of the rigid and soft tissues changed during impact in a structured manner indicative of a damped oscillation. Group mean amplitudes for COM motion of the soft tissues relative to the rigid body of up to 1.4 cm, and changes of up to 17% in moment of inertia of the soft tissue about the rigid body COM were found. This study has shown that meaningful changes in inertial parameters can be observed and quantified during even moderate impacts. Further examination of the effects these could have on movement dynamics and energetics seems pertinent.
Chronic uphill and downhill exercise protocols do not lead to sarcomerogenesis in mouse skeletal muscle.
Venue: Journal of biomechanics

It has been suggested that eccentric contraction (EC) is associated with increases in serially arranged sarcomeres (sarcomerogenesis), while concentric contraction (CC) has been associated with serial sarcomeres decrease. Sarcomerogenesis following EC is thought to be a protective muscle adaptation, preventing muscle injury in future eccentric exercise bouts (repeated bout effect). However, the mechanisms underlying sarcomerogenesis in EC remain unknown, and the sarcomerogenic responses observed in response to EC and CC are contradictory. We measured sarcomere length, sarcomere length uniformity, serial sarcomere number, and fascicle length in gastrocnemius medialis, tibialis anterior, vastus medialis and vastus lateralis in sedentary (SED) mice, and in mice following protocols of moderate uphill (TRU) and downhill (TRD) training and uphill (OTU) and downhill (OTD) overtraining. We found pain sensitivity after the first bout of EC exercise on TRD and OTD followed by a normalized sensory response after four weeks of training, indicating a repeated bout effect. However, these findings were not associated with sarcomerogenesis, as serial sarcomere numbers did not increase in TRD and OTD skeletal muscle samples compared to controls (SED). However, we found a decrease in serial sarcomere number in VL and TA in OTU group mice, which was associated with a decrease in fascicle length and no change of sarcomere length at the tested joint configuration. We conclude that excessive concentric muscle contraction (OTU group mice), leads to a decrease in serial sarcomere number, while moderate or excessive eccentric training, did not result in sarcomerogenesis, as reported in the literature.
The effects of intensive dietary weight loss and exercise on gait in overweight and obese adults with knee osteoarthritis. The Intensive Diet and Exercise for Arthritis (IDEA) trial.
Venue: Journal of biomechanics

The Intensive Diet and Exercise for Arthritis (IDEA) trial was an 18-month randomized controlled trial that enrolled 454 overweight and obese older adults with symptomatic and radiographic knee osteoarthritis (OA). Participants were randomized to either exercise (E), intensive diet-induced weight loss (D), or intensive diet-induced weight loss plus exercise (D + E) interventions. We previously reported that the clinical benefits of D + E were significantly greater than with either intervention alone (e.g., greater pain reduction, and better function, mobility, and health-related quality of life). We now test the hypothesis that D + E has greater overall benefit on gait mechanics compared to either intervention alone. Knee joint loading was analyzed using inverse dynamics and musculoskeletal modeling. Analysis of covariance determined the interventions' effects on gait. The D + E group walked significantly faster at 18-month follow-up (1.35 m s-1) than E (1.29 m s-1, p = 0.0004) and D (1.31 m s-1, p = 0.0007). Tibiofemoral compressive impulse was significantly lower (p = 0.0007) in D (1069 N s) and D + E (1054 N s) compared to E (1130 N s). D had significantly lower peak hip external rotation moment (p = 0.01), hip abduction moment (p = 0.0003), and peak hip power production (p = 0.016) compared with E. Peak ankle plantar flexion moment was significantly less (p < 0.0001) in the two diet groups compared with E. There also was a significant dose-response to weight loss; participants that lost >10% of baseline body weight had significantly (p = 0.0001) lower resultant knee forces and lower muscle (quadriceps, hamstring, and gastrocnemius) forces than participants that had less weight loss. Compared to E, D produces significant load reductions at the hip, knee, and ankle; combining D with E attenuates these reductions, but most remain significantly better than with E alone.