Repository: joblib/joblib

Issue:
support python3.11
Release the version supporting python3.11 as soon as possible.

Discussion:
codecov[bot]: # [Codecov](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib) Report
Base: **93.94**% // Head: **79.84**% // Decreases project coverage by **`-14.10%`** :warning:
> Coverage data is based on head [(`210e765`)](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib) compared to base [(`061d4ad`)](https://codecov.io/gh/joblib/joblib/commit/061d4ad3b5bd3bab597a2b22c0e67376fb1e25c8?el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib).
> Patch has no changes to coverable lines.

<details><summary>Additional details and impacted files</summary>


```diff
@@             Coverage Diff             @@
##           master    #1389       +/-   ##
===========================================
- Coverage   93.94%   79.84%   -14.10%     
===========================================
  Files          52       52               
  Lines        7328     7141      -187     
===========================================
- Hits         6884     5702     -1182     
- Misses        444     1439      +995     
```


| [Impacted Files](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib) | Coverage Δ | |
|---|---|---|
| [joblib/test/test\_dask.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL3Rlc3QvdGVzdF9kYXNrLnB5) | `3.92% <0.00%> (-87.27%)` | :arrow_down: |
| [joblib/\_dask.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL19kYXNrLnB5) | `24.01% <0.00%> (-68.67%)` | :arrow_down: |
| [joblib/test/test\_memmapping.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL3Rlc3QvdGVzdF9tZW1tYXBwaW5nLnB5) | `35.30% <0.00%> (-63.95%)` | :arrow_down: |
| [joblib/\_memmapping\_reducer.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL19tZW1tYXBwaW5nX3JlZHVjZXIucHk=) | `61.27% <0.00%> (-34.61%)` | :arrow_down: |
| [joblib/executor.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL2V4ZWN1dG9yLnB5) | `76.19% <0.00%> (-23.81%)` | :arrow_down: |
| [joblib/backports.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL2JhY2twb3J0cy5weQ==) | `50.00% <0.00%> (-19.39%)` | :arrow_down: |
| [joblib/test/testutils.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL3Rlc3QvdGVzdHV0aWxzLnB5) | `33.33% <0.00%> (-16.67%)` | :arrow_down: |
| [joblib/pool.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL3Bvb2wucHk=) | `72.13% <0.00%> (-15.68%)` | :arrow_down: |
| [joblib/test/test\_parallel.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL3Rlc3QvdGVzdF9wYXJhbGxlbC5weQ==) | `84.60% <0.00%> (-12.45%)` | :arrow_down: |
| [joblib/disk.py](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib#diff-am9ibGliL2Rpc2sucHk=) | `80.95% <0.00%> (-11.12%)` | :arrow_down: |
| ... and [22 more](https://codecov.io/gh/joblib/joblib/pull/1389?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=joblib) | |

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</details>

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Patch:
diff --git a/CHANGES.rst b/CHANGES.rst
index 6f2dd8a..3f1bf8e 100644
--- a/CHANGES.rst
+++ b/CHANGES.rst
@@ -27,6 +27,11 @@ In development
   errors, a new warning has been introduced: `joblib.memory.CacheWarning`.
   https://github.com/joblib/joblib/pull/1359
 
+- Avoid (module, name) collisions when caching nested functions. This fix
+  changes the module name of nested functions, invalidating caches from
+  previous versions of Joblib.
+  https://github.com/joblib/joblib/pull/1374
+
 Release 1.2.0
 -------------
 
diff --git a/azure-pipelines.yml b/azure-pipelines.yml
index a9cdaa1..8f1acb0 100644
--- a/azure-pipelines.yml
+++ b/azure-pipelines.yml
@@ -60,10 +60,10 @@ jobs:
         imageName: 'ubuntu-latest'
         PYTHON_VERSION: "3.7"
         EXTRA_CONDA_PACKAGES: "numpy=1.15 distributed=2.13"
-      linux_py310_cython:
+      linux_py311_cython:
         imageName: 'ubuntu-latest'
-        PYTHON_VERSION: "3.10"
-        EXTRA_CONDA_PACKAGES: "numpy=1.23"
+        PYTHON_VERSION: "3.11"
+        EXTRA_CONDA_PACKAGES: "numpy=1.24.1"
         CYTHON: "true"
       linux_py37_no_multiprocessing_no_lzma:
         imageName: 'ubuntu-latest'
diff --git a/doc/memory.rst b/doc/memory.rst
index 7f829f7..901ccd0 100644
--- a/doc/memory.rst
+++ b/doc/memory.rst
@@ -152,7 +152,7 @@ arrays::
     square(array([[0., 0., 1.],
            [1., 1., 1.],
            [4., 2., 1.]]))
-    ___________________________________________________________square - 0.0s, 0.0min
+    ___________________________________________________________square - ...min
     memmap([[ 0.,  0.,  1.],
             [ 1.,  1.,  1.],
             [16.,  4.,  1.]])
diff --git a/joblib/func_inspect.py b/joblib/func_inspect.py
index d334a2b..58d9751 100644
--- a/joblib/func_inspect.py
+++ b/joblib/func_inspect.py
@@ -166,6 +166,10 @@ def get_func_name(func, resolv_alias=True, win_characters=True):
         if hasattr(func, 'func_globals') and name in func.func_globals:
             if not func.func_globals[name] is func:
                 name = '%s-alias' % name
+    if hasattr(func, '__qualname__') and func.__qualname__ != name:
+        # Extend the module name in case of nested functions to avoid
+        # (module, name) collisions
+        module.extend(func.__qualname__.split(".")[:-1])
     if inspect.ismethod(func):
         # We need to add the name of the class
         if hasattr(func, 'im_class'):
diff --git a/pyproject.toml b/pyproject.toml
index fd51f1d..c6723bf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -20,6 +20,7 @@ classifiers = [
     "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
     "Topic :: Scientific/Engineering",
     "Topic :: Utilities",
     "Topic :: Software Development :: Libraries",


Test patch:
diff --git a/conftest.py b/conftest.py
index 5a7919f..53413de 100644
--- a/conftest.py
+++ b/conftest.py
@@ -1,9 +1,11 @@
 import os
 
+import logging
+import faulthandler
+
 import pytest
 from _pytest.doctest import DoctestItem
 
-import logging
 from joblib.parallel import mp
 from joblib.backports import LooseVersion
 try:
@@ -53,6 +55,11 @@ def pytest_configure(config):
         log.handlers[0].setFormatter(logging.Formatter(
             '[%(levelname)s:%(processName)s:%(threadName)s] %(message)s'))
 
+    # Some CI runs failed with hanging processes that were not terminated
+    # with the timeout. To make sure we always get a proper trace, set a large
+    # enough dump_traceback_later to kill the process with a report.
+    faulthandler.dump_traceback_later(30 * 60, exit=True)
+
     DEFAULT_BACKEND = os.environ.get(
         "JOBLIB_TESTS_DEFAULT_PARALLEL_BACKEND", None
     )
@@ -66,12 +73,14 @@ def pytest_configure(config):
 
 
 def pytest_unconfigure(config):
+
     # Setup a global traceback printer callback to debug deadlocks that
     # would happen once pytest has completed: for instance in atexit
     # finalizers. At this point the stdout/stderr capture of pytest
-    # should be disabled.
+    # should be disabled. Note that we cancel the global dump_traceback_later
+    # to waiting for too long.
+    faulthandler.cancel_dump_traceback_later()
 
     # Note that we also use a shorter timeout for the per-test callback
     # configured via the pytest-timeout extension.
-    import faulthandler
     faulthandler.dump_traceback_later(60, exit=True)
diff --git a/joblib/test/test_func_inspect.py b/joblib/test/test_func_inspect.py
index b3b7b7b..a2a010e 100644
--- a/joblib/test/test_func_inspect.py
+++ b/joblib/test/test_func_inspect.py
@@ -146,6 +146,26 @@ def test_func_name_on_inner_func(cached_func):
     assert get_func_name(cached_func)[1] == 'cached_func_inner'
 
 
+def test_func_name_collision_on_inner_func():
+    # Check that two functions defining and caching an inner function
+    # with the same do not cause (module, name) collision
+    def f():
+        def inner_func():
+            return  # pragma: no cover
+        return get_func_name(inner_func)
+
+    def g():
+        def inner_func():
+            return  # pragma: no cover
+        return get_func_name(inner_func)
+
+    module, name = f()
+    other_module, other_name = g()
+
+    assert name == other_name
+    assert module != other_module
+
+
 def test_func_inspect_errors():
     # Check that func_inspect is robust and will work on weird objects
     assert get_func_name('a'.lower)[-1] == 'lower'
diff --git a/joblib/test/test_memmapping.py b/joblib/test/test_memmapping.py
index 4d298d0..af90a96 100644
--- a/joblib/test/test_memmapping.py
+++ b/joblib/test/test_memmapping.py
@@ -798,9 +798,9 @@ def test_child_raises_parent_exits_cleanly(backend):
 
         def get_temp_folder(parallel_obj, backend):
             if "{b}" == "loky":
-                return Path(p._backend._workers._temp_folder)
+                return Path(parallel_obj._backend._workers._temp_folder)
             else:
-                return Path(p._backend._pool._temp_folder)
+                return Path(parallel_obj._backend._pool._temp_folder)
 
 
         if __name__ == "__main__":
diff --git a/joblib/test/test_numpy_pickle.py b/joblib/test/test_numpy_pickle.py
index 5c4bb09..9fee585 100644
--- a/joblib/test/test_numpy_pickle.py
+++ b/joblib/test/test_numpy_pickle.py
@@ -280,8 +280,9 @@ def test_compress_mmap_mode_warning(tmpdir):
     numpy_pickle.dump(a, this_filename, compress=1)
     with warns(UserWarning) as warninfo:
         numpy_pickle.load(this_filename, mmap_mode='r+')
+    debug_msg = "\n".join([str(w) for w in warninfo])
     warninfo = [w.message for w in warninfo]
-    assert len(warninfo) == 1
+    assert len(warninfo) == 1, debug_msg
     assert (
         str(warninfo[0]) ==
         'mmap_mode "r+" is not compatible with compressed '
diff --git a/joblib/test/test_testing.py b/joblib/test/test_testing.py
index 39ac880..cc94463 100644
--- a/joblib/test/test_testing.py
+++ b/joblib/test/test_testing.py
@@ -58,7 +58,9 @@ def test_check_subprocess_call_timeout():
         'sys.stdout.flush()',
         'sys.stderr.write("before sleep on stderr")',
         'sys.stderr.flush()',
-        'time.sleep(1.1)',
+        # We need to sleep for at least 2 * timeout seconds in case the SIGKILL
+        # is triggered.
+        'time.sleep(2.1)',
         'print("process should have be killed before")',
         'sys.stdout.flush()'])
 
diff --git a/joblib/testing.py b/joblib/testing.py
index f8939f0..caab7d2 100644
--- a/joblib/testing.py
+++ b/joblib/testing.py
@@ -40,20 +40,39 @@ def check_subprocess_call(cmd, timeout=5, stdout_regex=None,
                           stderr_regex=None):
     """Runs a command in a subprocess with timeout in seconds.
 
+    A SIGTERM is sent after `timeout` and if it does not terminate, a
+    SIGKILL is sent after `2 * timeout`.
+
     Also checks returncode is zero, stdout if stdout_regex is set, and
     stderr if stderr_regex is set.
     """
     proc = subprocess.Popen(cmd, stdout=subprocess.PIPE,
                             stderr=subprocess.PIPE)
 
-    def kill_process():
-        warnings.warn("Timeout running {}".format(cmd))
+    def terminate_process():  # pragma: no cover
+        """
+        Attempt to terminate a leftover process spawned during test execution:
+        ideally this should not be needed but can help avoid clogging the CI
+        workers in case of deadlocks.
+        """
+        warnings.warn(f"Timeout running {cmd}")
+        proc.terminate()
+
+    def kill_process():  # pragma: no cover
+        """
+        Kill a leftover process spawned during test execution: ideally this
+        should not be needed but can help avoid clogging the CI workers in
+        case of deadlocks.
+        """
+        warnings.warn(f"Timeout running {cmd}")
         proc.kill()
 
     try:
         if timeout is not None:
-            timer = threading.Timer(timeout, kill_process)
-            timer.start()
+            terminate_timer = threading.Timer(timeout, terminate_process)
+            terminate_timer.start()
+            kill_timer = threading.Timer(2 * timeout, kill_process)
+            kill_timer.start()
         stdout, stderr = proc.communicate()
         stdout, stderr = stdout.decode(), stderr.decode()
         if proc.returncode != 0:
@@ -76,4 +95,5 @@ def check_subprocess_call(cmd, timeout=5, stdout_regex=None,
 
     finally:
         if timeout is not None:
-            timer.cancel()
+            terminate_timer.cancel()
+            kill_timer.cancel()