Repository: IAMconsortium/nomenclature

Issue:
Region aggregation fails for wildcard variables
This dict lookup fails because we don't have an exact match:

https://github.com/IAMconsortium/nomenclature/blob/c3ad7daf699906d4e9ec8ed538434033194e7ffc/nomenclature/codelist.py#L598-L605

Discussion:
danielhuppmann: At least this issue made me realize that I hadn't set skip-region-aggregation where I should have done so...
https://github.com/IAMconsortium/common-definitions/pull/249

Patch:
diff --git a/nomenclature/code.py b/nomenclature/code.py
index 036ad86..415b308 100644
--- a/nomenclature/code.py
+++ b/nomenclature/code.py
@@ -3,19 +3,21 @@ import re
 from keyword import iskeyword
 from pathlib import Path
 from typing import Any
+
+from pyam.utils import to_list
 from pydantic import (
-    field_validator,
-    field_serializer,
-    ConfigDict,
     BaseModel,
+    ConfigDict,
     Field,
     ValidationInfo,
+    field_serializer,
+    field_validator,
+    model_validator,
 )
+from typing_extensions import Self
 
 from nomenclature.error import ErrorCollector
 
-from pyam.utils import to_list
-
 from .countries import countries
 
 
@@ -208,6 +210,14 @@ class VariableCode(Code):
     def convert_none_to_empty_string(cls, v):
         return v if v is not None else ""
 
+    @model_validator(mode="after")
+    def wildcard_must_skip_region_aggregation(self) -> Self:
+        if self.is_wildcard and self.skip_region_aggregation is False:
+            raise ValueError(
+                f"Wildcard variable '{self.name}' must skip region aggregation"
+            )
+        return self
+
     @field_validator("components", mode="before")
     def cast_variable_components_args(cls, v):
         """Cast "components" list of dicts to a codelist"""
@@ -224,6 +234,10 @@ class VariableCode(Code):
     def convert_str_to_none_for_writing(self, v):
         return v if v != "" else None
 
+    @property
+    def is_wildcard(self) -> bool:
+        return "*" in self.name
+
     @property
     def units(self) -> list[str]:
         return self.unit if isinstance(self.unit, list) else [self.unit]
diff --git a/nomenclature/codelist.py b/nomenclature/codelist.py
index d9cb703..329158e 100644
--- a/nomenclature/codelist.py
+++ b/nomenclature/codelist.py
@@ -595,13 +595,15 @@ class VariableCodeList(CodeList):
             )
         return v
 
-    def vars_default_args(self, variables: list[str]) -> list[VariableCode]:
+    def vars_default_args(self, variables: list[str]) -> list[str]:
         """return subset of variables which does not feature any special pyam
         aggregation arguments and where skip_region_aggregation is False"""
         return [
-            self[var]
+            var
             for var in variables
-            if not self[var].agg_kwargs and not self[var].skip_region_aggregation
+            if var in self.keys()
+            and not self[var].agg_kwargs
+            and not self[var].skip_region_aggregation
         ]
 
     def vars_kwargs(self, variables: list[str]) -> list[VariableCode]:
@@ -610,7 +612,9 @@ class VariableCodeList(CodeList):
         return [
             self[var]
             for var in variables
-            if self[var].agg_kwargs and not self[var].skip_region_aggregation
+            if var in self.keys()
+            and self[var].agg_kwargs
+            and not self[var].skip_region_aggregation
         ]
 
     def validate_units(
@@ -621,8 +625,7 @@ class VariableCodeList(CodeList):
         if invalid_units := [
             (variable, unit, self.mapping[variable].unit)
             for variable, unit in unit_mapping.items()
-            if variable in self.variables
-            and unit not in self.mapping[variable].units
+            if variable in self.variables and unit not in self.mapping[variable].units
         ]:
             lst = [
                 f"'{v}' - expected: {'one of ' if isinstance(e, list) else ''}"
diff --git a/nomenclature/definition.py b/nomenclature/definition.py
index 9f3e639..f0b1c2c 100644
--- a/nomenclature/definition.py
+++ b/nomenclature/definition.py
@@ -139,6 +139,9 @@ class DataStructureDefinition:
 
         with adjust_log_level(level="WARNING"):
             for code in df.variable:
+                if code not in self.variable.mapping:
+                    continue
+
                 attr = self.variable.mapping[code]
                 if attr.check_aggregate:
                     components = attr.components
diff --git a/nomenclature/processor/region.py b/nomenclature/processor/region.py
index 06b56ec..976223d 100644
--- a/nomenclature/processor/region.py
+++ b/nomenclature/processor/region.py
@@ -646,7 +646,7 @@ class RegionProcessor(Processor):
 
                     # first, perform 'simple' aggregation (no arguments)
                     simple_vars = [
-                        var.name
+                        var
                         for var in self.variable_codelist.vars_default_args(
                             model_df.variable
                         )
diff --git a/poetry.lock b/poetry.lock
index c7288c5..46aa5e5 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -43,24 +43,24 @@ files = [
 
 [[package]]
 name = "anyio"
-version = "4.6.2.post1"
+version = "4.7.0"
 description = "High level compatibility layer for multiple asynchronous event loop implementations"
 optional = false
 python-versions = ">=3.9"
 files = [
-    {file = "anyio-4.6.2.post1-py3-none-any.whl", hash = "sha256:6d170c36fba3bdd840c73d3868c1e777e33676a69c3a72cf0a0d5d6d8009b61d"},
-    {file = "anyio-4.6.2.post1.tar.gz", hash = "sha256:4c8bc31ccdb51c7f7bd251f51c609e038d63e34219b44aa86e47576389880b4c"},
+    {file = "anyio-4.7.0-py3-none-any.whl", hash = "sha256:ea60c3723ab42ba6fff7e8ccb0488c898ec538ff4df1f1d5e642c3601d07e352"},
+    {file = "anyio-4.7.0.tar.gz", hash = "sha256:2f834749c602966b7d456a7567cafcb309f96482b5081d14ac93ccd457f9dd48"},
 ]
 
 [package.dependencies]
 exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""}
 idna = ">=2.8"
 sniffio = ">=1.1"
-typing-extensions = {version = ">=4.1", markers = "python_version < \"3.11\""}
+typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""}
 
 [package.extras]
-doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21.0b1)"]
+doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"]
+test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"]
 trio = ["trio (>=0.26.1)"]
 
 [[package]]
@@ -79,13 +79,13 @@ dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"]
 
 [[package]]
 name = "certifi"
-version = "2024.8.30"
+version = "2024.12.14"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
 files = [
-    {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
-    {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
+    {file = "certifi-2024.12.14-py3-none-any.whl", hash = "sha256:1275f7a45be9464efc1173084eaa30f866fe2e47d389406136d332ed4967ec56"},
+    {file = "certifi-2024.12.14.tar.gz", hash = "sha256:b650d30f370c2b724812bee08008be0c4163b163ddaec3f2546c1caf65f191db"},
 ]
 
 [[package]]
@@ -302,73 +302,73 @@ test-no-images = ["pytest", "pytest-cov", "pytest-rerunfailures", "pytest-xdist"
 
 [[package]]
 name = "coverage"
-version = "7.6.7"
+version = "7.6.9"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.9"
 files = [
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-    {file = "coverage-7.6.7-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:3c6b24007c4bcd0b19fac25763a7cac5035c735ae017e9a349b927cfc88f31c1"},
-    {file = "coverage-7.6.7-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:acbb8af78f8f91b3b51f58f288c0994ba63c646bc1a8a22ad072e4e7e0a49f1c"},
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 [package.extras]
@@ -746,13 +746,13 @@ trio = ["trio (>=0.22.0,<1.0)"]
 
 [[package]]
 name = "httpx"
-version = "0.27.2"
+version = "0.28.1"
 description = "The next generation HTTP client."
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
@@ -761,7 +761,6 @@ certifi = "*"
 h2 = {version = ">=3,<5", optional = true, markers = "extra == \"http2\""}
 httpcore = "==1.*"
 idna = "*"
-sniffio = "*"
 
 [package.extras]
 brotli = ["brotli", "brotlicffi"]
@@ -837,13 +836,13 @@ files = [
 
 [[package]]
 name = "ixmp4"
-version = "0.9.7"
+version = "0.9.8"
 description = "a data warehouse for scenario analysis"
 optional = false
-python-versions = "<3.13,>=3.10"
+python-versions = "<3.14,>=3.10"
 files = [
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 ]
 
 [package.dependencies]
@@ -853,7 +852,7 @@ httpx = {version = ">=0.25.0", extras = ["http2"]}
 openpyxl = ">=3.0.9"
 pandas = ">=2.1.0"
 pandera = ">=0.17.0"
-psycopg = {version = ">=3.1.12,<4.0.0", extras = ["binary"]}
+psycopg = {version = ">=3.1.12", extras = ["binary"]}
 pydantic = ">=2.3.0"
 pydantic-settings = ">=2.1.0"
 PyJWT = ">=2.4.0"
@@ -1006,13 +1005,13 @@ files = [
 
 [[package]]
 name = "mako"
-version = "1.3.6"
+version = "1.3.8"
 description = "A super-fast templating language that borrows the best ideas from the existing templating languages."
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 python-versions = ">=3.8"
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 [package.dependencies]
@@ -1178,7 +1171,7 @@ pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
 
 [package.extras]
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 [[package]]
 name = "mccabe"
@@ -1279,66 +1272,66 @@ files = [
 
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 typeguard = "*"
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+typing_inspect = ">=0.6.0"
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 [[package]]
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 [[package]]
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 [package.dependencies]
@@ -2773,81 +2796,76 @@ numpy = ">=1.18"
 
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+    {file = "wrapt-1.17.0-py3-none-any.whl", hash = "sha256:d2c63b93548eda58abf5188e505ffed0229bf675f7c3090f8e36ad55b8cbc371"},
+    {file = "wrapt-1.17.0.tar.gz", hash = "sha256:16187aa2317c731170a88ef35e8937ae0f533c402872c1ee5e6d079fcf320801"},
 ]
 
 [[package]]
@@ -2864,4 +2882,4 @@ files = [
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.10, <3.13"
-content-hash = "7e7e6e326e4cfe29574059917bdc7f8be7700eb06145f1c58242e37e88885a77"
+content-hash = "7adab6dad5be348168dad759726a86ad1d8e9b7cc28fa3cdee2b14219cbf3219"
diff --git a/pyproject.toml b/pyproject.toml
index 800535a..eae4872 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -10,7 +10,7 @@ packages = [{include = "nomenclature"}]
 [tool.poetry.dependencies]
 python = ">=3.10, <3.13"
 click = ">= 8"
-pyam-iamc = "^2.1"
+pyam-iamc = ">= 2.1"
 openpyxl = "^3.1.2"
 pydantic = "^2"
 PyYAML = "^6.0.1"


Test patch:
diff --git a/tests/data/region_processing/skip_aggregation/mappings/model_a.yaml b/tests/data/region_processing/skip_aggregation/mappings/model_a.yaml
index d7e4267..9c22510 100644
--- a/tests/data/region_processing/skip_aggregation/mappings/model_a.yaml
+++ b/tests/data/region_processing/skip_aggregation/mappings/model_a.yaml
@@ -1,4 +1,4 @@
-model: m_a
+model: model_a
 native_regions:
   - region_A
   - region_B
diff --git a/tests/data/region_processing/wildcard_skip_aggregation/dsd/region/regions.yaml b/tests/data/region_processing/wildcard_skip_aggregation/dsd/region/regions.yaml
new file mode 100644
index 0000000..24a2ed5
--- /dev/null
+++ b/tests/data/region_processing/wildcard_skip_aggregation/dsd/region/regions.yaml
@@ -0,0 +1,5 @@
+- common:
+  - World
+- model_native:
+  - region_A
+  - region_B
diff --git a/tests/data/region_processing/wildcard_skip_aggregation/dsd/variable/variables.yaml b/tests/data/region_processing/wildcard_skip_aggregation/dsd/variable/variables.yaml
new file mode 100644
index 0000000..4f8428d
--- /dev/null
+++ b/tests/data/region_processing/wildcard_skip_aggregation/dsd/variable/variables.yaml
@@ -0,0 +1,4 @@
+- Capital Cost|Electricity|*:
+    definition: Capital cost of electricity generation for a specific technology
+    unit: USD_2010/kW
+    skip-region-aggregation: true
diff --git a/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_a.yaml b/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_a.yaml
new file mode 100644
index 0000000..9c22510
--- /dev/null
+++ b/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_a.yaml
@@ -0,0 +1,8 @@
+model: model_a
+native_regions:
+  - region_A
+  - region_B
+common_regions:
+  - World:
+    - region_A
+    - region_B
diff --git a/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_b.yaml b/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_b.yaml
new file mode 100644
index 0000000..77c1f9c
--- /dev/null
+++ b/tests/data/region_processing/wildcard_skip_aggregation/mappings/model_b.yaml
@@ -0,0 +1,8 @@
+model: model_b
+native_regions:
+  - region_A
+  - region_b: region_B
+common_regions:
+  - World:
+    - region_A
+    - region_b
diff --git a/tests/test_check_aggregate.py b/tests/test_check_aggregate.py
index c51217f..da57e7e 100644
--- a/tests/test_check_aggregate.py
+++ b/tests/test_check_aggregate.py
@@ -70,7 +70,9 @@ def test_check_aggregate_failing(components, exp):
 
     # create a copy where aggregation tests will fail
     df = TEST_DF.copy()
-    df._data.iloc[5] = 8
+    df._data.loc[
+        ("model_a", "scen_a", "World", "Final Energy|Industry", "EJ/yr", 2005)
+    ] = 8
 
     # `check_aggregate` returns a dataframe of the inconsistent data
     pdt.assert_frame_equal(dsd.check_aggregate(df), exp)
diff --git a/tests/test_code.py b/tests/test_code.py
index 25380b7..9db67fc 100644
--- a/tests/test_code.py
+++ b/tests/test_code.py
@@ -37,6 +37,12 @@ def test_variable_multiple_units():
     assert var.unit == ["unit1", "unit2"]
 
 
+def test_variable_wildcard_skip_region_aggregation_required():
+    """Test that a VariableCode with wildcard must have skip_region_aggregation: True"""
+    with raises(ValueError, match="Wildcard variable 'Var1\*' must skip region"):
+        VariableCode.from_dict({"Var1*": {"unit": "unit1"}})
+
+
 @pytest.mark.parametrize("unit", ["Test unit", ["Test unit 1", "Test unit 2"]])
 def test_set_attributes_with_json(unit):
     var = VariableCode(
diff --git a/tests/test_codelist.py b/tests/test_codelist.py
index 0a833c0..552161f 100644
--- a/tests/test_codelist.py
+++ b/tests/test_codelist.py
@@ -298,9 +298,16 @@ def test_illegal_char_ignores_external_repo():
     """Check that external repos are excluded from this check."""
     # the config includes illegal characters known to be in common-definitions
     # the test will not raise errors as the check is skipped for external repos
-    DataStructureDefinition(
-        MODULE_TEST_DATA_DIR / "illegal_chars" / "char_in_external_repo" / "definitions"
-    )
+
+    try:
+        dsd = DataStructureDefinition(
+            MODULE_TEST_DATA_DIR
+            / "illegal_chars"
+            / "char_in_external_repo"
+            / "definitions"
+        )
+    finally:
+        clean_up_external_repos(dsd.config.repositories)
 
 
 def test_end_whitespace_fails():
diff --git a/tests/test_core.py b/tests/test_core.py
index ad7abaa..ceb9009 100644
--- a/tests/test_core.py
+++ b/tests/test_core.py
@@ -259,8 +259,8 @@ def test_region_processing_weighted_aggregation(folder, exp_df, args, caplog):
 )
 def test_region_processing_skip_aggregation(model_name, region_names):
     # Testing two cases:
-    # * model "m_a" renames native regions and the world region is skipped
-    # * model "m_b" renames single constituent common regions
+    # * model "model_a" renames native regions and the world region is skipped
+    # * model "model_b" renames single constituent common regions
 
     test_df = IamDataFrame(
         pd.DataFrame(
@@ -296,6 +296,51 @@ def test_region_processing_skip_aggregation(model_name, region_names):
     assert_iamframe_equal(obs, exp)
 
 
+@pytest.mark.parametrize(
+    "model_name, region_names",
+    [("model_a", ("region_A", "region_B")), ("model_b", ("region_A", "region_b"))],
+)
+def test_region_processing_wildcard_skip_aggregation(model_name, region_names):
+    # Testing two cases:
+    # * model "model_a" keeps native regions as they are
+    # * model "model_b" renames one native region
+
+    variable = "Capital Cost|Electricity|Solar PV"
+    unit = "USD_2010/kW"
+    test_df = IamDataFrame(
+        pd.DataFrame(
+            [
+                [model_name, "s_a", region_names[0], variable, unit, 1, 2],
+                [model_name, "s_a", region_names[1], variable, unit, 3, 4],
+            ],
+            columns=IAMC_IDX + [2005, 2010],
+        )
+    )
+    add_meta(test_df)
+
+    exp = IamDataFrame(
+        pd.DataFrame(
+            [
+                [model_name, "s_a", "region_A", variable, unit, 1, 2],
+                [model_name, "s_a", "region_B", variable, unit, 3, 4],
+            ],
+            columns=IAMC_IDX + [2005, 2010],
+        )
+    )
+    add_meta(exp)
+
+    obs = process(
+        test_df,
+        dsd := DataStructureDefinition(
+            TEST_DATA_DIR / "region_processing/wildcard_skip_aggregation/dsd"
+        ),
+        processor=RegionProcessor.from_directory(
+            TEST_DATA_DIR / "region_processing/wildcard_skip_aggregation/mappings", dsd
+        ),
+    )
+    assert_iamframe_equal(obs, exp)
+
+
 @pytest.mark.parametrize(
     "input_data, exp_data, warning",
     [
diff --git a/tests/test_validation.py b/tests/test_validation.py
index 51b9acf..e104db3 100644
--- a/tests/test_validation.py
+++ b/tests/test_validation.py
@@ -70,9 +70,9 @@ def test_validation_fails_region(simple_definition, simple_df, caplog):
 def test_validation_multiple_units(extras_definition, simple_df):
     """Validating against a VariableCode with multiple units works as expected"""
     extras_definition.validate(
-        simple_df
-        .filter(variable="Primary Energy|Coal")
-        .rename(unit={"EJ/yr": "GWh/yr"})
+        simple_df.filter(variable="Primary Energy|Coal").rename(
+            unit={"EJ/yr": "GWh/yr"}
+        )
     )