Repository: iterative/dvc

Issue:
remote: use progress bar for remote cache query status during `dvc gc`
As noted in #3532 
> both local and ssh have their own overridden cache_exists() implementation and neither one uses list_cache_paths() at all during cache_exists(). The only time list_cache_paths() would get called for either local or ssh remotes would be for RemoteBASE.all() during a dvc gc call.
>
> all() does not currently display any progressbars at all, but now that I'm thinking about this, it probably should

`RemoteBASE.all()` can use the same remote size estimation behavior as `cache_exists()` so that `dvc gc` displays actual progress/status when iterating over the full list of remote checksums. This will make `gc` behavior consistent with `push`/`pull`

Discussion:
pmrowla: [![asciicast](https://asciinema.org/a/Yjsm1vemX6bUTEEZ6NqE8O73j.svg)](https://asciinema.org/a/Yjsm1vemX6bUTEEZ6NqE8O73j?t=2:45)

`dvc gc` is still very quiet until it gets to the actual cache query step - it still looks like it's hanging for the first 2:50 in the example

Patch:
diff --git a/dvc/command/data_sync.py b/dvc/command/data_sync.py
index a7decd18b..e44e8ea7a 100644
--- a/dvc/command/data_sync.py
+++ b/dvc/command/data_sync.py
@@ -190,13 +190,15 @@ def add_parser(subparsers, _parent_parser):
         "--recursive",
         action="store_true",
         default=False,
-        help="Push cache from subdirectories of specified directory.",
+        help="Push cache for subdirectories of specified directory.",
     )
     push_parser.set_defaults(func=CmdDataPush)
 
     # Fetch
-    FETCH_HELP = "Get tracked files or directories from remote storage"
-    " into the cache."
+    FETCH_HELP = (
+        "Get tracked files or directories from remote storage"
+        " into the cache."
+    )
 
     fetch_parser = subparsers.add_parser(
         "fetch",
diff --git a/dvc/command/diff.py b/dvc/command/diff.py
index 804e65fd8..c907fc0df 100644
--- a/dvc/command/diff.py
+++ b/dvc/command/diff.py
@@ -121,7 +121,7 @@ class CmdDiff(CmdBase):
 def add_parser(subparsers, parent_parser):
     DIFF_DESCRIPTION = (
         "Show changes between commits in the DVC repository,"
-        " or between a commit and the workspace."
+        " or between a commit and the workspace. "
         "Prints the list of paths added, modified, or deleted."
     )
     diff_parser = subparsers.add_parser(
diff --git a/dvc/command/repro.py b/dvc/command/repro.py
index 63f532f4e..138de04fe 100644
--- a/dvc/command/repro.py
+++ b/dvc/command/repro.py
@@ -57,8 +57,9 @@ class CmdRepro(CmdBase):
 
 
 def add_parser(subparsers, parent_parser):
-    REPRO_HELP = "Reproduce complete or partial pipelines"
-    " by executing their stages."
+    REPRO_HELP = (
+        "Reproduce complete or partial pipelines by executing their stages."
+    )
     repro_parser = subparsers.add_parser(
         "repro",
         parents=[parent_parser],
diff --git a/dvc/command/version.py b/dvc/command/version.py
index 8356cb402..f110d68ea 100644
--- a/dvc/command/version.py
+++ b/dvc/command/version.py
@@ -142,9 +142,9 @@ def _get_dvc_repo_info(repo):
 
 
 def add_parser(subparsers, parent_parser):
-    VERSION_HELP = "Display the DVC version"
-    " and system/environment information."
-
+    VERSION_HELP = (
+        "Display the DVC version and system/environment information."
+    )
     version_parser = subparsers.add_parser(
         "version",
         parents=[parent_parser],
diff --git a/dvc/remote/base.py b/dvc/remote/base.py
index 4c1bae8ee..c349a7a12 100644
--- a/dvc/remote/base.py
+++ b/dvc/remote/base.py
@@ -697,12 +697,13 @@ class RemoteBASE(object):
     def list_cache_paths(self, prefix=None, progress_callback=None):
         raise NotImplementedError
 
-    def all(self, *args, **kwargs):
-        # NOTE: The list might be way too big(e.g. 100M entries, md5 for each
-        # is 32 bytes, so ~3200Mb list) and we don't really need all of it at
-        # the same time, so it makes sense to use a generator to gradually
-        # iterate over it, without keeping all of it in memory.
-        for path in self.list_cache_paths(*args, **kwargs):
+    def cache_checksums(self, prefix=None, progress_callback=None):
+        """Iterate over remote cache checksums.
+
+        If `prefix` is specified, only checksums which begin with `prefix`
+        will be returned.
+        """
+        for path in self.list_cache_paths(prefix, progress_callback):
             try:
                 yield self.path_to_checksum(path)
             except ValueError:
@@ -710,14 +711,35 @@ class RemoteBASE(object):
                     "'%s' doesn't look like a cache file, skipping", path
                 )
 
-    def gc(self, named_cache):
+    def all(self, jobs=None, name=None):
+        """Iterate over all checksums in the remote cache.
+
+        Checksums will be fetched in parallel threads according to prefix
+        (except for small remotes) and a progress bar will be displayed.
+        """
+        logger.debug(
+            "Fetching all checksums from '{}'".format(
+                name if name else "remote cache"
+            )
+        )
+
+        if not self.CAN_TRAVERSE:
+            return self.cache_checksums()
+
+        remote_size, remote_checksums = self._estimate_cache_size(name=name)
+        return self._cache_checksums_traverse(
+            remote_size, remote_checksums, jobs, name
+        )
+
+    def gc(self, named_cache, jobs=None):
+        logger.debug("named_cache: {} jobs: {}".format(named_cache, jobs))
         used = self.extract_used_local_checksums(named_cache)
 
         if self.scheme != "":
             used.update(named_cache[self.scheme])
 
         removed = False
-        for checksum in self.all():
+        for checksum in self.all(jobs, str(self.path_info)):
             if checksum in used:
                 continue
             path_info = self.checksum_to_path_info(checksum)
@@ -850,7 +872,7 @@ class RemoteBASE(object):
 
         # Max remote size allowed for us to use traverse method
         remote_size, remote_checksums = self._estimate_cache_size(
-            checksums, name=name
+            checksums, name
         )
 
         traverse_pages = remote_size / self.LIST_OBJECT_PAGE_SIZE
@@ -875,32 +897,25 @@ class RemoteBASE(object):
                 checksums - remote_checksums, jobs, name
             )
 
-        if traverse_pages < 256 / self.JOBS:
-            # Threaded traverse will require making at least 255 more requests
-            # to the remote, so for small enough remotes, fetching the entire
-            # list at once will require fewer requests (but also take into
-            # account that this must be done sequentially rather than in
-            # parallel)
-            logger.debug(
-                "Querying {} checksums via default traverse".format(
-                    len(checksums)
-                )
-            )
-            return list(checksums & set(self.all()))
-
-        return self._cache_exists_traverse(
-            checksums, remote_checksums, remote_size, jobs, name
+        logger.debug(
+            "Querying {} checksums via traverse".format(len(checksums))
         )
+        remote_checksums = self._cache_checksums_traverse(
+            remote_size, remote_checksums, jobs, name
+        )
+        return list(checksums & set(remote_checksums))
 
-    def _all_with_limit(self, max_paths, prefix=None, progress_callback=None):
+    def _checksums_with_limit(
+        self, limit, prefix=None, progress_callback=None
+    ):
         count = 0
-        for checksum in self.all(prefix, progress_callback):
+        for checksum in self.cache_checksums(prefix, progress_callback):
             yield checksum
             count += 1
-            if count > max_paths:
+            if count > limit:
                 logger.debug(
-                    "`all()` returned max '{}' checksums, "
-                    "skipping remaining results".format(max_paths)
+                    "`cache_checksums()` returned max '{}' checksums, "
+                    "skipping remaining results".format(limit)
                 )
                 return
 
@@ -913,33 +928,32 @@ class RemoteBASE(object):
             * self.LIST_OBJECT_PAGE_SIZE,
         )
 
-    def _estimate_cache_size(self, checksums, short_circuit=True, name=None):
+    def _estimate_cache_size(self, checksums=None, name=None):
         """Estimate remote cache size based on number of entries beginning with
         "00..." prefix.
         """
         prefix = "0" * self.TRAVERSE_PREFIX_LEN
         total_prefixes = pow(16, self.TRAVERSE_PREFIX_LEN)
-        if short_circuit:
-            max_remote_size = self._max_estimation_size(checksums)
+        if checksums:
+            max_checksums = self._max_estimation_size(checksums)
         else:
-            max_remote_size = None
+            max_checksums = None
 
         with Tqdm(
             desc="Estimating size of "
             + ("cache in '{}'".format(name) if name else "remote cache"),
             unit="file",
-            total=max_remote_size,
         ) as pbar:
 
             def update(n=1):
                 pbar.update(n * total_prefixes)
 
-            if max_remote_size:
-                checksums = self._all_with_limit(
-                    max_remote_size / total_prefixes, prefix, update
+            if max_checksums:
+                checksums = self._checksums_with_limit(
+                    max_checksums / total_prefixes, prefix, update
                 )
             else:
-                checksums = self.all(prefix, update)
+                checksums = self.cache_checksums(prefix, update)
 
             remote_checksums = set(checksums)
             if remote_checksums:
@@ -949,38 +963,60 @@ class RemoteBASE(object):
             logger.debug("Estimated remote size: {} files".format(remote_size))
         return remote_size, remote_checksums
 
-    def _cache_exists_traverse(
-        self, checksums, remote_checksums, remote_size, jobs=None, name=None
+    def _cache_checksums_traverse(
+        self, remote_size, remote_checksums, jobs=None, name=None
     ):
-        logger.debug(
-            "Querying {} checksums via threaded traverse".format(
-                len(checksums)
-            )
-        )
-
-        traverse_prefixes = ["{:02x}".format(i) for i in range(1, 256)]
-        if self.TRAVERSE_PREFIX_LEN > 2:
-            traverse_prefixes += [
-                "{0:0{1}x}".format(i, self.TRAVERSE_PREFIX_LEN)
-                for i in range(1, pow(16, self.TRAVERSE_PREFIX_LEN - 2))
-            ]
+        """Iterate over all checksums in the remote cache.
+        Checksums are fetched in parallel according to prefix, except in
+        cases where the remote size is very small.
+
+        All checksums from the remote (including any from the size
+        estimation step passed via the `remote_checksums` argument) will be
+        returned.
+
+        NOTE: For large remotes the list of checksums will be very
+        big(e.g. 100M entries, md5 for each is 32 bytes, so ~3200Mb list)
+        and we don't really need all of it at the same time, so it makes
+        sense to use a generator to gradually iterate over it, without
+        keeping all of it in memory.
+        """
+        num_pages = remote_size / self.LIST_OBJECT_PAGE_SIZE
+        if num_pages < 256 / self.JOBS:
+            # Fetching prefixes in parallel requires at least 255 more
+            # requests, for small enough remotes it will be faster to fetch
+            # entire cache without splitting it into prefixes.
+            #
+            # NOTE: this ends up re-fetching checksums that were already
+            # fetched during remote size estimation
+            traverse_prefixes = [None]
+            initial = 0
+        else:
+            yield from remote_checksums
+            initial = len(remote_checksums)
+            traverse_prefixes = ["{:02x}".format(i) for i in range(1, 256)]
+            if self.TRAVERSE_PREFIX_LEN > 2:
+                traverse_prefixes += [
+                    "{0:0{1}x}".format(i, self.TRAVERSE_PREFIX_LEN)
+                    for i in range(1, pow(16, self.TRAVERSE_PREFIX_LEN - 2))
+                ]
         with Tqdm(
             desc="Querying "
             + ("cache in '{}'".format(name) if name else "remote cache"),
             total=remote_size,
-            initial=len(remote_checksums),
-            unit="objects",
+            initial=initial,
+            unit="file",
         ) as pbar:
 
             def list_with_update(prefix):
-                return self.all(prefix=prefix, progress_callback=pbar.update)
+                return list(
+                    self.cache_checksums(
+                        prefix=prefix, progress_callback=pbar.update
+                    )
+                )
 
             with ThreadPoolExecutor(max_workers=jobs or self.JOBS) as executor:
                 in_remote = executor.map(list_with_update, traverse_prefixes,)
-                remote_checksums.update(
-                    itertools.chain.from_iterable(in_remote)
-                )
-            return list(checksums & remote_checksums)
+                yield from itertools.chain.from_iterable(in_remote)
 
     def _cache_object_exists(self, checksums, jobs=None, name=None):
         logger.debug(
diff --git a/dvc/remote/local.py b/dvc/remote/local.py
index 708480a13..fe0270ef3 100644
--- a/dvc/remote/local.py
+++ b/dvc/remote/local.py
@@ -27,6 +27,7 @@ class RemoteLOCAL(RemoteBASE):
     path_cls = PathInfo
     PARAM_CHECKSUM = "md5"
     PARAM_PATH = "path"
+    TRAVERSE_PREFIX_LEN = 2
 
     UNPACKED_DIR_SUFFIX = ".unpacked"
 
@@ -57,14 +58,17 @@ class RemoteLOCAL(RemoteBASE):
         return True
 
     def list_cache_paths(self, prefix=None, progress_callback=None):
-        assert prefix is None
         assert self.path_info is not None
+        if prefix:
+            path_info = self.path_info / prefix[:2]
+        else:
+            path_info = self.path_info
         if progress_callback:
-            for path in walk_files(self.path_info):
+            for path in walk_files(path_info):
                 progress_callback()
                 yield path
         else:
-            yield from walk_files(self.path_info)
+            yield from walk_files(path_info)
 
     def get(self, md5):
         if not md5:
diff --git a/dvc/remote/ssh/__init__.py b/dvc/remote/ssh/__init__.py
index 703617b2a..7781669c4 100644
--- a/dvc/remote/ssh/__init__.py
+++ b/dvc/remote/ssh/__init__.py
@@ -4,6 +4,7 @@ import io
 import itertools
 import logging
 import os
+import posixpath
 import threading
 from concurrent.futures import ThreadPoolExecutor
 from contextlib import closing, contextmanager
@@ -44,6 +45,7 @@ class RemoteSSH(RemoteBASE):
     # paramiko stuff, so we would ideally have it double of server processors.
     # We use conservative setting of 4 instead to not exhaust max sessions.
     CHECKSUM_JOBS = 4
+    TRAVERSE_PREFIX_LEN = 2
 
     DEFAULT_CACHE_TYPES = ["copy"]
 
@@ -85,6 +87,13 @@ class RemoteSSH(RemoteBASE):
         self.password = config.get("password", None)
         self.ask_password = config.get("ask_password", False)
         self.gss_auth = config.get("gss_auth", False)
+        proxy_command = user_ssh_config.get("proxycommand", False)
+        if proxy_command:
+            import paramiko
+
+            self.sock = paramiko.ProxyCommand(proxy_command)
+        else:
+            self.sock = None
 
     @staticmethod
     def ssh_config_filename():
@@ -136,6 +145,7 @@ class RemoteSSH(RemoteBASE):
             timeout=self.timeout,
             password=self.password,
             gss_auth=self.gss_auth,
+            sock=self.sock,
         )
 
     def exists(self, path_info):
@@ -250,15 +260,18 @@ class RemoteSSH(RemoteBASE):
                 yield io.TextIOWrapper(fd, encoding=encoding)
 
     def list_cache_paths(self, prefix=None, progress_callback=None):
-        assert prefix is None
+        if prefix:
+            root = posixpath.join(self.path_info.path, prefix[:2])
+        else:
+            root = self.path_info.path
         with self.ssh(self.path_info) as ssh:
             # If we simply return an iterator then with above closes instantly
             if progress_callback:
-                for path in ssh.walk_files(self.path_info.path):
+                for path in ssh.walk_files(root):
                     progress_callback()
                     yield path
             else:
-                yield from ssh.walk_files(self.path_info.path)
+                yield from ssh.walk_files(root)
 
     def walk_files(self, path_info):
         with self.ssh(path_info) as ssh:
diff --git a/dvc/repo/gc.py b/dvc/repo/gc.py
index 29f399240..8f1222fd8 100644
--- a/dvc/repo/gc.py
+++ b/dvc/repo/gc.py
@@ -8,8 +8,8 @@ from dvc.exceptions import InvalidArgumentError
 logger = logging.getLogger(__name__)
 
 
-def _do_gc(typ, func, clist):
-    removed = func(clist)
+def _do_gc(typ, func, clist, jobs=None):
+    removed = func(clist, jobs=jobs)
     if not removed:
         logger.info("No unused '{}' cache to remove.".format(typ))
 
@@ -74,22 +74,22 @@ def gc(
                 )
             )
 
-    _do_gc("local", self.cache.local.gc, used)
+    _do_gc("local", self.cache.local.gc, used, jobs)
 
     if self.cache.s3:
-        _do_gc("s3", self.cache.s3.gc, used)
+        _do_gc("s3", self.cache.s3.gc, used, jobs)
 
     if self.cache.gs:
-        _do_gc("gs", self.cache.gs.gc, used)
+        _do_gc("gs", self.cache.gs.gc, used, jobs)
 
     if self.cache.ssh:
-        _do_gc("ssh", self.cache.ssh.gc, used)
+        _do_gc("ssh", self.cache.ssh.gc, used, jobs)
 
     if self.cache.hdfs:
-        _do_gc("hdfs", self.cache.hdfs.gc, used)
+        _do_gc("hdfs", self.cache.hdfs.gc, used, jobs)
 
     if self.cache.azure:
-        _do_gc("azure", self.cache.azure.gc, used)
+        _do_gc("azure", self.cache.azure.gc, used, jobs)
 
     if cloud:
-        _do_gc("remote", self.cloud.get_remote(remote, "gc -c").gc, used)
+        _do_gc("remote", self.cloud.get_remote(remote, "gc -c").gc, used, jobs)
diff --git a/dvc/version.py b/dvc/version.py
index f3ddd6206..2439dd0d3 100644
--- a/dvc/version.py
+++ b/dvc/version.py
@@ -7,7 +7,7 @@ import os
 import subprocess
 
 
-_BASE_VERSION = "0.91.3"
+_BASE_VERSION = "0.91.4"
 
 
 def _generate_version(base_version):
diff --git a/scripts/completion/dvc.zsh b/scripts/completion/dvc.zsh
index 55b7e1351..2f4bf6393 100644
--- a/scripts/completion/dvc.zsh
+++ b/scripts/completion/dvc.zsh
@@ -202,7 +202,7 @@ _dvc_push=(
   {-a,--all-branches}"[Push cache for all branches.]"
   {-T,--all-tags}"[Push cache for all tags.]"
   {-d,--with-deps}"[Push cache for all dependencies of the specified target.]"
-  {-R,--recursive}"[Push cache from subdirectories of specified directory.]"
+  {-R,--recursive}"[Push cache for subdirectories of specified directory.]"
   "*:Stages:_files -g '(*.dvc|Dvcfile)'"
 )
 


Test patch:
diff --git a/tests/unit/remote/test_base.py b/tests/unit/remote/test_base.py
index ab799a78d..d5cad2870 100644
--- a/tests/unit/remote/test_base.py
+++ b/tests/unit/remote/test_base.py
@@ -49,18 +49,15 @@ class TestCmdError(TestCase, TestRemoteBASE):
                 self.REMOTE_CLS(repo, config).remove("file")
 
 
-@mock.patch.object(RemoteBASE, "_cache_exists_traverse")
+@mock.patch.object(RemoteBASE, "_cache_checksums_traverse")
 @mock.patch.object(RemoteBASE, "_cache_object_exists")
-@mock.patch.object(
-    RemoteBASE, "path_to_checksum", side_effect=lambda x: x,
-)
-def test_cache_exists(path_to_checksum, object_exists, traverse):
+def test_cache_exists(object_exists, traverse):
     remote = RemoteBASE(None, {})
 
     # remote does not support traverse
     remote.CAN_TRAVERSE = False
     with mock.patch.object(
-        remote, "list_cache_paths", return_value=list(range(256))
+        remote, "cache_checksums", return_value=list(range(256))
     ):
         checksums = list(range(1000))
         remote.cache_exists(checksums)
@@ -73,7 +70,7 @@ def test_cache_exists(path_to_checksum, object_exists, traverse):
     object_exists.reset_mock()
     traverse.reset_mock()
     with mock.patch.object(
-        remote, "list_cache_paths", return_value=list(range(256))
+        remote, "cache_checksums", return_value=list(range(256))
     ):
         checksums = list(range(1000))
         remote.cache_exists(checksums)
@@ -94,45 +91,56 @@ def test_cache_exists(path_to_checksum, object_exists, traverse):
     traverse.reset_mock()
     remote.JOBS = 16
     with mock.patch.object(
-        remote, "list_cache_paths", return_value=list(range(256))
+        remote, "cache_checksums", return_value=list(range(256))
     ):
         checksums = list(range(1000000))
         remote.cache_exists(checksums)
         object_exists.assert_not_called()
         traverse.assert_called_with(
-            frozenset(checksums),
-            set(range(256)),
             256 * pow(16, remote.TRAVERSE_PREFIX_LEN),
+            set(range(256)),
             None,
             None,
         )
 
-    # default traverse
-    object_exists.reset_mock()
-    traverse.reset_mock()
-    remote.TRAVERSE_WEIGHT_MULTIPLIER = 1
-    with mock.patch.object(remote, "list_cache_paths", return_value=[0]):
-        checksums = set(range(1000000))
-        remote.cache_exists(checksums)
-        traverse.assert_not_called()
-        object_exists.assert_not_called()
-
 
 @mock.patch.object(
-    RemoteBASE, "list_cache_paths", return_value=[],
+    RemoteBASE, "cache_checksums", return_value=[],
 )
 @mock.patch.object(
     RemoteBASE, "path_to_checksum", side_effect=lambda x: x,
 )
-def test_cache_exists_traverse(path_to_checksum, list_cache_paths):
+def test_cache_checksums_traverse(path_to_checksum, cache_checksums):
     remote = RemoteBASE(None, {})
     remote.path_info = PathInfo("foo")
-    remote._cache_exists_traverse({0}, set(), 4096)
+
+    # parallel traverse
+    size = 256 / remote.JOBS * remote.LIST_OBJECT_PAGE_SIZE
+    list(remote._cache_checksums_traverse(size, {0}))
     for i in range(1, 16):
-        list_cache_paths.assert_any_call(
+        cache_checksums.assert_any_call(
             prefix="{:03x}".format(i), progress_callback=CallableOrNone
         )
     for i in range(1, 256):
-        list_cache_paths.assert_any_call(
+        cache_checksums.assert_any_call(
             prefix="{:02x}".format(i), progress_callback=CallableOrNone
         )
+
+    # default traverse (small remote)
+    size -= 1
+    cache_checksums.reset_mock()
+    list(remote._cache_checksums_traverse(size - 1, {0}))
+    cache_checksums.assert_called_with(
+        prefix=None, progress_callback=CallableOrNone
+    )
+
+
+def test_cache_checksums():
+    remote = RemoteBASE(None, {})
+    remote.path_info = PathInfo("foo")
+
+    with mock.patch.object(
+        remote, "list_cache_paths", return_value=["12/3456", "bar"]
+    ):
+        checksums = list(remote.cache_checksums())
+        assert checksums == ["123456"]