Repository: BlueBrain/nexus (scala)

Issue:
Save a summary of the batch run in database
**Motivation**
To easily get some information about a batch run and compare it with previous runs, we need to save a summary in database.

**Acceptance criteria**
1. A summary should be run if the outcome is a success or an error
2. The summary can contain:
- The start and end time of the batch
- The input parameters
- Its outcome (success/error)
- The error if one has been met
- The report as a json blob
- The last processed offset if it is a success

Pull request description:
Fixes #4847

Patch:
diff --git a/delta/sourcing-psql/src/main/resources/scripts/postgres/drop/drop-tables.ddl b/delta/sourcing-psql/src/main/resources/scripts/postgres/drop/drop-tables.ddl
index 680006570e..db79608e49 100644
--- a/delta/sourcing-psql/src/main/resources/scripts/postgres/drop/drop-tables.ddl
+++ b/delta/sourcing-psql/src/main/resources/scripts/postgres/drop/drop-tables.ddl
@@ -1,3 +1,4 @@
+DROP TABLE    IF EXISTS public.ship_reports;
 DROP TABLE    IF EXISTS public.global_events;
 DROP TABLE    IF EXISTS public.global_states;
 DROP TABLE    IF EXISTS public.scoped_tombstones;
diff --git a/delta/sourcing-psql/src/main/resources/scripts/postgres/init/V1_10_M09_001__ship_reports.ddl b/delta/sourcing-psql/src/main/resources/scripts/postgres/init/V1_10_M09_001__ship_reports.ddl
new file mode 100644
index 0000000000..25cf1754bb
--- /dev/null
+++ b/delta/sourcing-psql/src/main/resources/scripts/postgres/init/V1_10_M09_001__ship_reports.ddl
@@ -0,0 +1,10 @@
+CREATE TABLE IF NOT EXISTS public.ship_runs(
+    ordering     bigserial,
+    started_at   timestamptz  NOT NULL,
+    ended_at     timestamptz  NOT NULL,
+    command      JSONB        NOT NULL,
+    success      boolean      NOT NULL,
+    error        text,
+    report       JSONB
+)
+
diff --git a/delta/sourcing-psql/src/main/scala/ch/epfl/bluebrain/nexus/delta/sourcing/model/EntityType.scala b/delta/sourcing-psql/src/main/scala/ch/epfl/bluebrain/nexus/delta/sourcing/model/EntityType.scala
index 3a5a244f12..44f61fec44 100644
--- a/delta/sourcing-psql/src/main/scala/ch/epfl/bluebrain/nexus/delta/sourcing/model/EntityType.scala
+++ b/delta/sourcing-psql/src/main/scala/ch/epfl/bluebrain/nexus/delta/sourcing/model/EntityType.scala
@@ -1,7 +1,7 @@
 package ch.epfl.bluebrain.nexus.delta.sourcing.model
 
 import doobie.{Get, Put}
-import io.circe.{Decoder, Encoder}
+import io.circe.{Decoder, Encoder, KeyEncoder}
 
 /**
   * Entity type
@@ -19,4 +19,6 @@ object EntityType {
 
   implicit val entityTypeDecoder: Decoder[EntityType] =
     Decoder.decodeString.map(EntityType(_))
+
+  implicit val entityTypeKeyEncoder: KeyEncoder[EntityType] = KeyEncoder.encodeKeyString.contramap(_.toString)
 }
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportReport.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportReport.scala
index 0c35abb7d3..f7ba5892d1 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportReport.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportReport.scala
@@ -6,11 +6,13 @@ import cats.syntax.all._
 import ch.epfl.bluebrain.nexus.delta.sourcing.exporter.RowEvent
 import ch.epfl.bluebrain.nexus.delta.sourcing.model.EntityType
 import ch.epfl.bluebrain.nexus.delta.sourcing.offset.Offset
-import ch.epfl.bluebrain.nexus.ship.ImportReport.Count
+import ch.epfl.bluebrain.nexus.ship.ImportReport.Statistics
+import io.circe.Encoder
+import io.circe.generic.semiauto.deriveEncoder
 
 import java.time.Instant
 
-final case class ImportReport(offset: Offset, instant: Instant, progress: Map[EntityType, Count]) {
+final case class ImportReport(offset: Offset, instant: Instant, progress: Map[EntityType, Statistics]) {
   def +(event: RowEvent, status: ImportStatus): ImportReport = {
     val entityType  = event.`type`
     val newProgress = progress.updatedWith(entityType) {
@@ -25,25 +27,30 @@ object ImportReport {
 
   val start: ImportReport = ImportReport(Offset.start, Instant.EPOCH, Map.empty)
 
-  final case class Count(success: Long, dropped: Long)
+  final case class Statistics(success: Long, dropped: Long)
 
-  object Count {
+  object Statistics {
 
-    implicit val countMonoid: Monoid[Count] = new Monoid[Count] {
-      override def empty: Count = Count(0L, 0L)
+    implicit val statisticsMonoid: Monoid[Statistics] = new Monoid[Statistics] {
+      override def empty: Statistics = Statistics(0L, 0L)
 
-      override def combine(x: Count, y: Count): Count = Count(x.success + y.success, x.dropped + y.dropped)
+      override def combine(x: Statistics, y: Statistics): Statistics =
+        Statistics(x.success + y.success, x.dropped + y.dropped)
     }
 
+    implicit val statisticsEncoder: Encoder[Statistics] = deriveEncoder[Statistics]
+
   }
 
+  implicit val reportEncoder: Encoder[ImportReport] = deriveEncoder[ImportReport]
+
   implicit val showReport: Show[ImportReport] = (report: ImportReport) => {
     val header  = s"Type\tSuccess\tDropped\n"
     val details = report.progress.foldLeft(header) { case (acc, (entityType, count)) =>
       acc ++ s"$entityType\t${count.success}\t${count.dropped}\n"
     }
 
-    val aggregatedCount = report.progress.values.reduceOption(_ |+| _).getOrElse(Count(0L, 0L))
+    val aggregatedCount = report.progress.values.reduceOption(_ |+| _).getOrElse(Statistics(0L, 0L))
     val global          =
       s"${aggregatedCount.success} events were imported up to offset ${report.offset} (${aggregatedCount.dropped} have been dropped)."
     s"$global\n$details"
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportStatus.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportStatus.scala
index 79525dae79..6795a0afcd 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportStatus.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ImportStatus.scala
@@ -1,22 +1,22 @@
 package ch.epfl.bluebrain.nexus.ship
 
-import ch.epfl.bluebrain.nexus.ship.ImportReport.Count
+import ch.epfl.bluebrain.nexus.ship.ImportReport.Statistics
 
 sealed trait ImportStatus {
 
-  def asCount: Count
+  def asCount: Statistics
 
 }
 
 object ImportStatus {
 
   case object Success extends ImportStatus {
-    override def asCount: Count = Count(1L, 0L)
+    override def asCount: Statistics = Statistics(1L, 0L)
   }
 
   case object Dropped extends ImportStatus {
 
-    override def asCount: Count = Count(0L, 1L)
+    override def asCount: Statistics = Statistics(0L, 1L)
 
   }
 
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/InitShip.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/InitShip.scala
index fc418742e1..c40b1c1fb4 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/InitShip.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/InitShip.scala
@@ -1,7 +1,8 @@
 package ch.epfl.bluebrain.nexus.ship
 
-import cats.effect.IO
+import cats.effect.{IO, Resource}
 import ch.epfl.bluebrain.nexus.delta.plugins.storage.storages.operations.s3.client.S3StorageClient
+import ch.epfl.bluebrain.nexus.delta.sourcing.Transactors
 import ch.epfl.bluebrain.nexus.delta.sourcing.exporter.RowEvent
 import ch.epfl.bluebrain.nexus.ship.ShipCommand.RunCommand
 import ch.epfl.bluebrain.nexus.ship.config.ShipConfig
@@ -9,7 +10,14 @@ import software.amazon.awssdk.auth.credentials.DefaultCredentialsProvider
 
 object InitShip {
 
-  def apply(run: RunCommand): IO[(ShipConfig, fs2.Stream[IO, RowEvent])] = run.mode match {
+  def apply(run: RunCommand): Resource[IO, (ShipConfig, fs2.Stream[IO, RowEvent], Transactors)] =
+    Resource.eval(configAndStream(run)).flatMap { case (config, eventStream) =>
+      Transactors
+        .init(config.database)
+        .map { xas => (config, eventStream, xas) }
+    }
+
+  private def configAndStream(run: RunCommand): IO[(ShipConfig, fs2.Stream[IO, RowEvent])] = run.mode match {
     case RunMode.Local =>
       val eventsStream = EventStreamer.localStreamer.stream(run.path, run.offset)
       ShipConfig.load(run.config).map(_ -> eventsStream)
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/Main.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/Main.scala
index 745d341610..45607738a1 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/Main.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/Main.scala
@@ -1,10 +1,9 @@
 package ch.epfl.bluebrain.nexus.ship
 
-import cats.effect.{ExitCode, IO}
+import cats.effect.{Clock, ExitCode, IO}
 import cats.syntax.all._
 import ch.epfl.bluebrain.nexus.delta.kernel.Logger
 import ch.epfl.bluebrain.nexus.delta.ship.BuildInfo
-import ch.epfl.bluebrain.nexus.delta.sourcing.Transactors
 import ch.epfl.bluebrain.nexus.delta.sourcing.offset.Offset
 import ch.epfl.bluebrain.nexus.ship.ShipCommand._
 import ch.epfl.bluebrain.nexus.ship.config.ShipConfig
@@ -41,7 +40,7 @@ object Main
     }
 
   private val run = Opts.subcommand("run", "Run an import") {
-    (inputPath, configFile, offset, runMode).mapN(RunCommand)
+    (inputPath, configFile, offset, runMode).mapN(RunCommand.apply)
   }
 
   private val showConfig = Opts.subcommand("config", "Show reconciled config") {
@@ -56,13 +55,18 @@ object Main
       }
       .map(_.as(ExitCode.Success))
 
-  private[ship] def run(r: RunCommand) =
-    for {
-      (config, eventsStream) <- InitShip(r)
-      _                      <- Transactors.init(config.database).use { xas =>
-                                  RunShip(eventsStream, config.input, xas)
-                                }
-    } yield ()
+  private[ship] def run(r: RunCommand): IO[Unit] = {
+    val clock = Clock[IO]
+    InitShip(r).use { case (config, eventsStream, xas) =>
+      for {
+        start         <- clock.realTimeInstant
+        reportOrError <- RunShip(eventsStream, config.input, xas).attempt
+        end           <- clock.realTimeInstant
+        _             <- ShipSummaryStore.save(xas, start, end, r, reportOrError)
+        _             <- IO.fromEither(reportOrError)
+      } yield ()
+    }
+  }
 
   private[ship] def showConfig(config: Option[Path]) =
     for {
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/RunMode.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/RunMode.scala
index 31d97d1ae9..59028310a0 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/RunMode.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/RunMode.scala
@@ -1,5 +1,7 @@
 package ch.epfl.bluebrain.nexus.ship
 
+import io.circe.Encoder
+
 sealed trait RunMode extends Product with Serializable
 
 object RunMode {
@@ -8,4 +10,9 @@ object RunMode {
 
   final case object S3 extends RunMode
 
+  implicit val runModeEncoder: Encoder[RunMode] = Encoder.encodeString.contramap {
+    case Local => "Local"
+    case S3    => "S3"
+  }
+
 }
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipCommand.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipCommand.scala
index 03274734b5..11bc1e8fe0 100644
--- a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipCommand.scala
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipCommand.scala
@@ -2,6 +2,10 @@ package ch.epfl.bluebrain.nexus.ship
 
 import ch.epfl.bluebrain.nexus.delta.sourcing.offset.Offset
 import fs2.io.file.Path
+import io.circe.Encoder
+import io.circe.generic.semiauto.deriveEncoder
+
+import scala.annotation.nowarn
 
 sealed trait ShipCommand extends Product with Serializable
 
@@ -9,6 +13,14 @@ object ShipCommand {
 
   final case class RunCommand(path: Path, config: Option[Path], offset: Offset, mode: RunMode) extends ShipCommand
 
+  object RunCommand {
+    @nowarn("cat=unused")
+    implicit val runCommandEncoder: Encoder[RunCommand] = {
+      implicit val pathEncoder: Encoder[Path] = Encoder.encodeString.contramap(_.toString)
+      deriveEncoder[RunCommand]
+    }
+  }
+
   final case class ShowConfigCommand(config: Option[Path]) extends ShipCommand
 
 }
diff --git a/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStore.scala b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStore.scala
new file mode 100644
index 0000000000..97cbb02a1f
--- /dev/null
+++ b/ship/src/main/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStore.scala
@@ -0,0 +1,34 @@
+package ch.epfl.bluebrain.nexus.ship
+
+import cats.effect.IO
+import ch.epfl.bluebrain.nexus.delta.kernel.utils.ThrowableUtils
+import ch.epfl.bluebrain.nexus.delta.sourcing.Transactors
+import ch.epfl.bluebrain.nexus.ship.ShipCommand.RunCommand
+import doobie.implicits._
+import doobie.postgres.implicits._
+import ch.epfl.bluebrain.nexus.delta.sourcing.implicits._
+import io.circe.syntax.EncoderOps
+
+import java.time.Instant
+
+object ShipSummaryStore {
+
+  def save(
+      xas: Transactors,
+      start: Instant,
+      end: Instant,
+      command: RunCommand,
+      reportOrError: Either[Throwable, ImportReport]
+  ): IO[Unit] = {
+    val success = reportOrError.isRight
+    val insert  = reportOrError match {
+      case Left(error)   => {
+        val errorMessage = ThrowableUtils.stackTraceAsString(error)
+        sql""" INSERT INTO ship_runs(started_at, ended_at, command, success, error) VALUES($start, $end, ${command.asJson}, $success, $errorMessage)"""
+      }
+      case Right(report) =>
+        sql""" INSERT INTO ship_runs(started_at, ended_at, command , success, report) VALUES($start, $end, ${command.asJson}, $success, ${report.asJson})"""
+    }
+    insert.update.run.transact(xas.write).void
+  }
+}


Test patch:
diff --git a/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/RunShipSuite.scala b/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/RunShipSuite.scala
index 2c03a6a8f9..2faae90f80 100644
--- a/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/RunShipSuite.scala
+++ b/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/RunShipSuite.scala
@@ -10,7 +10,7 @@ import ch.epfl.bluebrain.nexus.delta.sourcing.Transactors
 import ch.epfl.bluebrain.nexus.delta.sourcing.model.{EntityType, Label, ProjectRef}
 import ch.epfl.bluebrain.nexus.delta.sourcing.offset.Offset
 import ch.epfl.bluebrain.nexus.delta.sourcing.postgres.Doobie
-import ch.epfl.bluebrain.nexus.ship.ImportReport.Count
+import ch.epfl.bluebrain.nexus.ship.ImportReport.Statistics
 import ch.epfl.bluebrain.nexus.ship.RunShipSuite.{checkFor, expectedImportReport, getDistinctOrgProjects}
 import ch.epfl.bluebrain.nexus.ship.config.ShipConfigFixtures
 import ch.epfl.bluebrain.nexus.testkit.mu.NexusSuite
@@ -76,7 +76,7 @@ class RunShipSuite extends NexusSuite with Doobie.Fixture with ShipConfigFixture
   }
 
   private def thereIsOneProjectEventIn(report: ImportReport) =
-    report.progress == Map(Projects.entityType -> Count(1L, 0L))
+    report.progress == Map(Projects.entityType -> Statistics(1L, 0L))
 
 }
 
@@ -101,10 +101,10 @@ object RunShipSuite {
     Offset.at(9999999L),
     Instant.parse("2099-12-31T22:59:59.999Z"),
     Map(
-      Projects.entityType  -> Count(5L, 0L),
-      Resolvers.entityType -> Count(5L, 0L),
-      Resources.entityType -> Count(1L, 0L),
-      EntityType("xxx")    -> Count(0L, 1L)
+      Projects.entityType  -> Statistics(5L, 0L),
+      Resolvers.entityType -> Statistics(5L, 0L),
+      Resources.entityType -> Statistics(1L, 0L),
+      EntityType("xxx")    -> Statistics(0L, 1L)
     )
   )
 
diff --git a/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStoreSuite.scala b/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStoreSuite.scala
new file mode 100644
index 0000000000..41ce406425
--- /dev/null
+++ b/ship/src/test/scala/ch/epfl/bluebrain/nexus/ship/ShipSummaryStoreSuite.scala
@@ -0,0 +1,73 @@
+package ch.epfl.bluebrain.nexus.ship
+
+import cats.effect.IO
+import ch.epfl.bluebrain.nexus.delta.sourcing.postgres.Doobie
+import ch.epfl.bluebrain.nexus.ship.ShipCommand.RunCommand
+import ch.epfl.bluebrain.nexus.testkit.mu.NexusSuite
+import doobie.implicits._
+import doobie.postgres.implicits._
+import munit.AnyFixture
+import ch.epfl.bluebrain.nexus.delta.sourcing.offset.Offset
+import ch.epfl.bluebrain.nexus.ship.ShipSummaryStoreSuite.ReportRow
+import fs2.io.file.Path
+
+import java.time.Instant
+
+class ShipSummaryStoreSuite extends NexusSuite with Doobie.Fixture {
+
+  override def munitFixtures: Seq[AnyFixture[_]] = List(doobie)
+
+  private lazy val xas = doobie()
+
+  private def readLast: IO[ReportRow] =
+    sql"""SELECT started_at, ended_at, success, error is NOT NULL, report is NOT NULL
+                                             |FROM public.ship_runs
+                                             |ORDER by ordering DESC
+                                             |LIMIT 1
+                                             |""".stripMargin
+      .query[(Instant, Instant, Boolean, Boolean, Boolean)]
+      .unique
+      .transact(xas.read)
+      .map { case (start, end, success, hasError, hasReport) =>
+        ReportRow(start, end, success, hasError, hasReport)
+      }
+
+  private def assertSaveRun(
+      start: Instant,
+      end: Instant,
+      command: RunCommand,
+      reportOrError: Either[Throwable, ImportReport]
+  ) = {
+    for {
+      _   <- ShipSummaryStore.save(xas, start, end, command, reportOrError)
+      row <- readLast
+    } yield {
+      assertEquals(row.start, start)
+      assertEquals(row.end, end)
+      assertEquals(row.success, reportOrError.isRight)
+      assertEquals(row.hasError, reportOrError.isLeft)
+      assertEquals(row.hasReport, reportOrError.isRight)
+    }
+  }
+
+  private val start      = Instant.parse("2024-04-17T10:00:00.000Z")
+  private val end        = Instant.parse("2024-04-17T11:00:00.000Z")
+  private val runCommand = RunCommand(Path("/data"), None, Offset.start, RunMode.Local)
+
+  test("Save a failed run") {
+    val error = new IllegalStateException("BOOM !")
+    assertSaveRun(start, end, runCommand, Left(error))
+  }
+
+  test("Save a successful run") {
+    val report = ImportReport(Offset.at(5L), Instant.now(), Map.empty)
+    assertSaveRun(start, end, runCommand, Right(report))
+  }
+
+}
+
+object ShipSummaryStoreSuite {
+
+  final case class ReportRow(start: Instant, end: Instant, success: Boolean, hasError: Boolean, hasReport: Boolean)
+
+}