Repository: aeye-lab/pymovements
Pull request #851 (2024-10-17 16:31:24)

feat: aoi mapping extended to end coordinate instead of width/height
previously we were only able to map fixations to aoi via `width` and `height`. this PR introduces also `end_coordinate_column` to map fixaitons to aois.

codecov[bot]: ## [Codecov](https://app.codecov.io/gh/aeye-lab/pymovements/pull/851?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aeye-lab) Report
All modified and coverable lines are covered by tests :white_check_mark:
> Project coverage is 100.00%. Comparing base [(`9ef3dd2`)](https://app.codecov.io/gh/aeye-lab/pymovements/commit/9ef3dd2402e410ca1f6b1ece2c856666e99e899a?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aeye-lab) to head [(`e2a6095`)](https://app.codecov.io/gh/aeye-lab/pymovements/commit/e2a60953575148cfb9997dbce375696b876eb160?dropdown=coverage&el=desc&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aeye-lab).

<details><summary>Additional details and impacted files</summary>


```diff
@@            Coverage Diff            @@
##              main      #851   +/-   ##
=========================================
  Coverage   100.00%   100.00%           
=========================================
  Files           72        72           
  Lines         3251      3264   +13     
  Branches       574       576    +2     
=========================================
+ Hits          3251      3264   +13     
```

</details>

[:umbrella: View full report in Codecov by Sentry](https://app.codecov.io/gh/aeye-lab/pymovements/pull/851?dropdown=coverage&src=pr&el=continue&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=aeye-lab).   
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SiQube: good catch -- thank you -- changed!

Patch:
diff --git a/src/pymovements/stimulus/text.py b/src/pymovements/stimulus/text.py
index 6e91570..397924a 100644
--- a/src/pymovements/stimulus/text.py
+++ b/src/pymovements/stimulus/text.py
@@ -35,16 +35,25 @@ class TextStimulus:
         A stimulus dataframe.
     aoi_column: str
         Name of the column that contains the content of the aois.
-    pixel_x_column: str
-        Name of the column which contains the x coordinate of the areas of interest.
-    pixel_y_column: str
-        Name of the column which contains the y coordinate of the areas of interest.
-    width_column: str
-        Name of the column which contains the width of the area of interest.
-    height_column: str
-        Name of the column which contains the height of the area of interest.
-    page_column: str
+    start_x_column: str
+        Name of the column which contains the x coordinate's start position of the
+        areas of interest.
+    start_y_column: str
+        Name of the column which contains the y coordinate's start position of the
+        areas of interest.
+    width_column: str | None
+        Name of the column which contains the width of the area of interest. (default: None)
+    height_column: str | None
+        Name of the column which contains the height of the area of interest. (default: None)
+    end_x_column: str | None
+        Name of the column which contains the x coordinate's end position of the areas of interest.
+        (default: None)
+    end_y_column: str | None
+        Name of the column which contains the y coordinate's end position of the areas of interest.
+        (default: None)
+    page_column: str | None
         Name of the column which contains the page information of the area of interest.
+        (default: None)
     """
 
     def __init__(
@@ -52,19 +61,23 @@ class TextStimulus:
             aois: pl.DataFrame,
             *,
             aoi_column: str,
-            pixel_x_column: str,
-            pixel_y_column: str,
-            width_column: str,
-            height_column: str,
-            page_column: str,
+            start_x_column: str,
+            start_y_column: str,
+            width_column: str | None = None,
+            height_column: str | None = None,
+            end_x_column: str | None = None,
+            end_y_column: str | None = None,
+            page_column: str | None = None,
     ) -> None:
 
         self.aois = aois.clone()
         self.aoi_column = aoi_column
-        self.pixel_x_column = pixel_x_column
-        self.pixel_y_column = pixel_y_column
         self.width_column = width_column
         self.height_column = height_column
+        self.start_x_column = start_x_column
+        self.start_y_column = start_y_column
+        self.end_x_column = end_x_column
+        self.end_y_column = end_y_column
         self.page_column = page_column
 
 
@@ -72,11 +85,13 @@ def from_file(
         aoi_path: str | Path,
         *,
         aoi_column: str,
-        pixel_x_column: str,
-        pixel_y_column: str,
-        width_column: str,
-        height_column: str,
-        page_column: str,
+        start_x_column: str,
+        start_y_column: str,
+        width_column: str | None = None,
+        height_column: str | None = None,
+        end_x_column: str | None = None,
+        end_y_column: str | None = None,
+        page_column: str | None = None,
         custom_read_kwargs: dict[str, Any] | None = None,
 ) -> TextStimulus:
     """Load text stimulus from file.
@@ -87,19 +102,29 @@ def from_file(
         Path to file to be read.
     aoi_column: str
         Name of the column that contains the content of the aois.
-    pixel_x_column: str
-        Name of the column which contains the x coordinate of the areas of interest.
-    pixel_y_column: str
-        Name of the column which contains the y coordinate of the areas of interest.
-    width_column: str
-        Name of the column which contains the width of the area of interest.
-    height_column: str
-        Name of the column which contains the height of the area of interest.
-    page_column: str
+    start_x_column: str
+        Name of the column which contains the x coordinate's start position of the
+        areas of interest.
+    start_y_column: str
+        Name of the column which contains the y coordinate's start position of the
+        areas of interest.
+    width_column: str | None
+        Name of the column which contains the width of the area of interest. (default: None)
+    height_column: str | None
+        Name of the column which contains the height of the area of interest. (default: None)
+    end_x_column: str | None
+        Name of the column which contains the x coordinate's end position of the areas of interest.
+        (default: None)
+    end_y_column: str | None
+        Name of the column which contains the y coordinate's end position of the areas of interest.
+        (default: None)
+    page_column: str | None
         Name of the column which contains the page information of the area of interest.
+        (default: None)
     custom_read_kwargs: dict[str, Any] | None
         Custom read keyword arguments for polars. (default: None)
 
+
     Returns
     -------
     TextStimulus
@@ -126,9 +151,11 @@ def from_file(
     return TextStimulus(
         aois=stimulus_df,
         aoi_column=aoi_column,
-        pixel_x_column=pixel_x_column,
-        pixel_y_column=pixel_y_column,
+        start_x_column=start_x_column,
+        start_y_column=start_y_column,
         width_column=width_column,
         height_column=height_column,
+        end_x_column=end_x_column,
+        end_y_column=end_y_column,
         page_column=page_column,
     )
diff --git a/src/pymovements/utils/aois.py b/src/pymovements/utils/aois.py
index a78c2ef..664c122 100644
--- a/src/pymovements/utils/aois.py
+++ b/src/pymovements/utils/aois.py
@@ -23,6 +23,7 @@ from __future__ import annotations
 import polars as pl
 
 from pymovements.stimulus import TextStimulus
+from pymovements.utils import checks
 
 
 def get_aoi(
@@ -33,6 +34,10 @@ def get_aoi(
 ) -> str:
     """Given eye movement and aoi dataframe, return aoi.
 
+    If `width` is used, calculation: start_x_column <= x_eye < start_x_column + width.
+    If `end_x_column` is used, calculation: start_x_column <= x_eye < end_x_column.
+    Analog for y coordinate and height.
+
     Parameters
     ----------
     aoi_dataframe: TextStimulus
@@ -48,22 +53,53 @@ def get_aoi(
     -------
     str
         Looked at area of interest.
+
+    Raises
+    ------
+    ValueError
+        If width and end_TYPE_column is None.
     """
-    try:
-        aoi = aoi_dataframe.aois.filter(
-            (aoi_dataframe.aois[aoi_dataframe.pixel_x_column] <= row[x_eye]) &
-            (
-                row[x_eye] <
-                aoi_dataframe.aois[aoi_dataframe.pixel_x_column] +
-                aoi_dataframe.aois[aoi_dataframe.width_column]
-            ) &
-            (aoi_dataframe.aois[aoi_dataframe.pixel_y_column] <= row[y_eye]) &
-            (
-                row[y_eye] <
-                aoi_dataframe.aois[aoi_dataframe.pixel_y_column] +
-                aoi_dataframe.aois[aoi_dataframe.height_column]
-            ),
-        )[aoi_dataframe.aoi_column].item()
-        return aoi
-    except ValueError:
-        return ''
+    if aoi_dataframe.width_column is not None:
+        checks.check_is_none_is_mutual(
+            height_column=aoi_dataframe.width_column,
+            width_column=aoi_dataframe.height_column,
+        )
+        try:
+            aoi = aoi_dataframe.aois.filter(
+                (aoi_dataframe.aois[aoi_dataframe.start_x_column] <= row[x_eye]) &
+                (
+                    row[x_eye] <
+                    aoi_dataframe.aois[aoi_dataframe.start_x_column] +
+                    aoi_dataframe.aois[aoi_dataframe.width_column]
+                ) &
+                (aoi_dataframe.aois[aoi_dataframe.start_y_column] <= row[y_eye]) &
+                (
+                    row[y_eye] <
+                    aoi_dataframe.aois[aoi_dataframe.start_y_column] +
+                    aoi_dataframe.aois[aoi_dataframe.height_column]
+                ),
+            )[aoi_dataframe.aoi_column].item()
+            return aoi
+        except ValueError:
+            return ''
+    elif aoi_dataframe.end_x_column is not None:
+        checks.check_is_none_is_mutual(
+            end_x_column=aoi_dataframe.end_x_column,
+            end_y_column=aoi_dataframe.end_y_column,
+        )
+        try:
+            aoi = aoi_dataframe.aois.filter(
+                # x-coordinate: within bounding box
+                (aoi_dataframe.aois[aoi_dataframe.start_x_column] <= row[x_eye]) &
+                (row[x_eye] < aoi_dataframe.aois[aoi_dataframe.end_x_column]) &
+                # y-coordinate: within bounding box
+                (aoi_dataframe.aois[aoi_dataframe.start_y_column] <= row[y_eye]) &
+                (row[y_eye] < aoi_dataframe.aois[aoi_dataframe.end_y_column]),
+            )[aoi_dataframe.aoi_column].item()
+            return aoi
+        except ValueError:
+            return ''
+    else:
+        raise ValueError(
+            'either aoi_dataframe.width or aoi_dataframe.end_x_column have to be not None',
+        )


Test patch:
diff --git a/tests/files/toy_text_1_1_aoi.csv b/tests/files/toy_text_1_1_aoi.csv
index f376ac1..32c56c0 100644
--- a/tests/files/toy_text_1_1_aoi.csv
+++ b/tests/files/toy_text_1_1_aoi.csv
@@ -1,745 +1,745 @@
-char,top_left_x,top_left_y,width,height,char_idx_in_line,line_idx,page,word
-W,400.0,122.0,14.95,23,0,0,question_1,What
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-?,684.0499999999998,122.0,14.95,23,19,0,question_1,pymovements?
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diff --git a/tests/unit/events/event_aoi_mapping_test.py b/tests/unit/events/event_aoi_mapping_test.py
index 775435e..61e555f 100644
--- a/tests/unit/events/event_aoi_mapping_test.py
+++ b/tests/unit/events/event_aoi_mapping_test.py
@@ -237,12 +237,12 @@ def dataset_fixture():
         'char',
     ],
 )
-def test_gaze_to_aoi_mapping_char(aoi_column, dataset):
+def test_gaze_to_aoi_mapping_char_width_height(aoi_column, dataset):
     aoi_df = pm.stimulus.text.from_file(
         'tests/files/toy_text_1_1_aoi.csv',
         aoi_column=aoi_column,
-        pixel_x_column='top_left_x',
-        pixel_y_column='top_left_y',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
         width_column='width',
         height_column='height',
         page_column='page',
@@ -252,12 +252,34 @@ def test_gaze_to_aoi_mapping_char(aoi_column, dataset):
     assert_frame_equal(dataset.events[0].frame, EXPECTED_DF[aoi_column])
 
 
+@pytest.mark.parametrize(
+    ('aoi_column'),
+    [
+        'word',
+        'char',
+    ],
+)
+def test_gaze_to_aoi_mapping_char_end(aoi_column, dataset):
+    aoi_df = pm.stimulus.text.from_file(
+        'tests/files/toy_text_1_1_aoi.csv',
+        aoi_column=aoi_column,
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
+        end_x_column='bottom_left_x',
+        end_y_column='bottom_left_y',
+        page_column='page',
+    )
+
+    dataset.events[0].map_to_aois(aoi_df)
+    assert_frame_equal(dataset.events[0].frame, EXPECTED_DF[aoi_column])
+
+
 def test_map_to_aois_raises_value_error():
     aoi_df = pm.stimulus.text.from_file(
         'tests/files/toy_text_1_1_aoi.csv',
         aoi_column='char',
-        pixel_x_column='top_left_x',
-        pixel_y_column='top_left_y',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
         width_column='width',
         height_column='height',
         page_column='page',
@@ -272,3 +294,17 @@ def test_map_to_aois_raises_value_error():
         gaze_df.map_to_aois(aoi_df, eye='right', gaze_type='')
     msg, = excinfo.value.args
     assert msg == 'neither position nor pixel in gaze dataframe, one needed for mapping'
+
+
+def test_map_to_aois_raises_value_error_missing_width_height(dataset):
+    aoi_df = pm.stimulus.text.from_file(
+        'tests/files/toy_text_1_1_aoi.csv',
+        aoi_column='char',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
+        page_column='page',
+    )
+    with pytest.raises(ValueError) as excinfo:
+        dataset.events[0].map_to_aois(aoi_df)
+    msg, = excinfo.value.args
+    assert msg == 'either aoi_dataframe.width or aoi_dataframe.end_x_column have to be not None'
diff --git a/tests/unit/gaze/gaze_aoi_mapping_test.py b/tests/unit/gaze/gaze_aoi_mapping_test.py
index 6fe1eb4..986c37e 100644
--- a/tests/unit/gaze/gaze_aoi_mapping_test.py
+++ b/tests/unit/gaze/gaze_aoi_mapping_test.py
@@ -454,12 +454,12 @@ EXPECTED_DF = {
         'position',
     ],
 )
-def test_gaze_to_aoi_mapping_char(eye, aoi_column, gaze_type):
+def test_gaze_to_aoi_mapping_char_width_height(eye, aoi_column, gaze_type):
     aoi_df = pm.stimulus.text.from_file(
         'tests/files/toy_text_1_1_aoi.csv',
         aoi_column=aoi_column,
-        pixel_x_column='top_left_x',
-        pixel_y_column='top_left_y',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
         width_column='width',
         height_column='height',
         page_column='page',
@@ -481,12 +481,62 @@ def test_gaze_to_aoi_mapping_char(eye, aoi_column, gaze_type):
     assert_frame_equal(gaze_df.frame, EXPECTED_DF[f'{aoi_column}_{eye}_{gaze_type}'])
 
 
+@pytest.mark.parametrize(
+    ('eye'),
+    [
+        'right',
+        'left',
+        'auto',
+        'else',
+    ],
+)
+@pytest.mark.parametrize(
+    ('aoi_column'),
+    [
+        'word',
+        'char',
+    ],
+)
+@pytest.mark.parametrize(
+    ('gaze_type'),
+    [
+        'pixel',
+        'position',
+    ],
+)
+def test_gaze_to_aoi_mapping_char_end(eye, aoi_column, gaze_type):
+    aoi_df = pm.stimulus.text.from_file(
+        'tests/files/toy_text_1_1_aoi.csv',
+        aoi_column=aoi_column,
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
+        end_x_column='bottom_left_x',
+        end_y_column='bottom_left_y',
+        page_column='page',
+    )
+    if gaze_type == 'pixel':
+        gaze_df = pm.gaze.io.from_csv(
+            'tests/files/judo1000_example.csv',
+            **{'separator': '\t'},
+            pixel_columns=['x_left', 'y_left', 'x_right', 'y_right'],
+        )
+    elif gaze_type == 'position':
+        gaze_df = pm.gaze.io.from_csv(
+            'tests/files/judo1000_example.csv',
+            **{'separator': '\t'},
+            position_columns=['x_left', 'y_left', 'x_right', 'y_right'],
+        )
+
+    gaze_df.map_to_aois(aoi_df, eye=eye, gaze_type=gaze_type)
+    assert_frame_equal(gaze_df.frame, EXPECTED_DF[f'{aoi_column}_{eye}_{gaze_type}'])
+
+
 def test_map_to_aois_raises_value_error():
     aoi_df = pm.stimulus.text.from_file(
         'tests/files/toy_text_1_1_aoi.csv',
         aoi_column='char',
-        pixel_x_column='top_left_x',
-        pixel_y_column='top_left_y',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
         width_column='width',
         height_column='height',
         page_column='page',
diff --git a/tests/unit/stimulus/text_test.py b/tests/unit/stimulus/text_test.py
index 8617fa2..8d6a774 100644
--- a/tests/unit/stimulus/text_test.py
+++ b/tests/unit/stimulus/text_test.py
@@ -77,6 +77,34 @@ EXPECTED_DF = polars.DataFrame(
             'pymovements?',
             'pymovements?',
         ],
+        'bottom_left_x': [
+            414.95,
+            429.9,
+            444.84999999999997,
+            459.8,
+            474.75,
+            489.7,
+            504.65,
+            519.6,
+            534.55,
+            549.5,
+            564.45,
+            579.4,
+        ],
+        'bottom_left_y': [
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+            145.0,
+        ],
     },
 )
 
@@ -102,8 +130,8 @@ def test_text_stimulus(aoi_file, custom_read_kwargs, expected):
     aois = pm.stimulus.text.from_file(
         aoi_file,
         aoi_column='char',
-        pixel_x_column='top_left_x',
-        pixel_y_column='top_left_y',
+        start_x_column='top_left_x',
+        start_y_column='top_left_y',
         width_column='width',
         height_column='height',
         page_column='page',
@@ -123,8 +151,8 @@ def test_text_stimulus_unsupported_format():
         pm.stimulus.text.from_file(
             'tests/files/toy_text_1_1_aoi.pickle',
             aoi_column='char',
-            pixel_x_column='top_left_x',
-            pixel_y_column='top_left_y',
+            start_x_column='top_left_x',
+            start_y_column='top_left_y',
             width_column='width',
             height_column='height',
             page_column='page',