Yu - Gi - Oh ! 5D ' s World Championship 2011 : Over the Nexus Yu - Gi - Oh ! 5D ' s World Championship 2011 : Over the Nexus is the third " Yu - Gi - Oh ! 5D ' s " game for the Nintendo DS and the fifth " World Championship " game for the Nintendo DS . Story . The storyline of Over the Nexus does not immediately tie into that of the anime , unlike the previous two games . The player more or less keeps to their separate plot until the story reaches the halfway point , where it starts using events from the WRGP arc of the anime . As EXVC cards are not present in the card database , the plot simply ends where Aporia would have been introduced into the story . Chapter 1 - The Beginning - The Frontier Lands , Crash Town . The story starts in the deserted city of Crash Town . The player has a dream of becoming the best duelist , but they are awakened by Klaus , telling them that their dream won ' t be real and then Klaus goes to work on the mines . The player heads to Nico and West ' s hideout , where they duel to pass the time until the nearby card shop opens . The card shop is hosting a Rental Deck Tournament , where participants face off using pre - made Decks . One contestant has yet to arrive and so the player fills in for them . After defeating all opponents , the player heads home , only to be stopped by Bronson , who was the tournament participant whom the player replaced . Bronson is soon defeated by the player , and remarks that the player has done well for winning in his place . The Player goes back to their house . There , they find Klaus , who is telling them that the next day the two must go shopping in Satellite . Chapter 2 - The Encounter - Team Satisfaction . Before the player and Klaus leave for Satellite , Toru requests that the player help him purchase some Duel Runner parts . After their arrival in Satellite , the player and Klaus go their separate ways to get what they need . The player is soon sidetracked when he / she meets a girl named Lilie who is looking for Crow . They find him , but Crow mistakes the player as a kidnapper and duels them . Lilie soon clears the misunderstanding and leaves with Crow . The player then continues to look for Duel Runner parts , and meets Gordon , who recommends a shop . After making the purchase , Gordon ambushes the player and steals the parts . The player gives chase , only to be stopped by gangsters along the way . However , Team Satisfaction appears and engages the gangsters , allowing for the player to pursue Gordon and retrieve the parts . On the way out , two of the Team Satisfaction members - Yusei and Kalin - introduce themselves to the player . Yusei checks the parts purchased by the player and realizes that they simply consist of junk stuck together . While Yusei goes off to get functional parts , Kalin heads back to the Duel Runner shop to get Toru ' s money back . The player also wishes to thank the remaining member , Jack . On meeting Jack , the player gets into a duel for sport , and soon gets friendly matches with the other members of Team Satisfaction . With Yusei ' s recommended parts in tow , the player returns to Crash Town . Chapter 3 - The Turning Point - Just Me and My Duel Runner . Back at Crash Town , the player hands over Yusei ' s parts to Toru . Toru notes that they are of much better quality than what he asked for , and begins work on the Duel Runner . The player also relays the story to Nico and West , and Toru arrives at the hideout to announce the completion of his Duel Runner . They all head to the outskirts of the town , where Toru drives his Duel Runner around and even lets the player attempt a test drive . Soon , Toru declares that he will be moving out of Crash Town and into New Domino City . Klaus forbids the player to go along , saying that they would just waste their time there . The next day , the war between Malcolm and Ramon escalates , and Nico is nowhere to be found . The player sets out to look for her and escort her back to their home , dueling through members of the warring factions along the way . With the siblings reunited , Klaus lets them stay for the night before getting them to their home . Klaus notes that the player has been improving and challenges them , to a duel to ascertain it . Having confidence in his grandchild ' s ability , Klaus reveals a Duel Runner hidden in the basement of the player ' s home . He mentioned that the player ' s parents were Turbo Duelist s who lost their lives in an accident , resulting in his initial reluctance to allow the player to ride a Duel Runner . Using the Duel Runner , Klaus plans to move out of Crash Town with the player , Nico and West . However , Nico and West have to stay in Crash Town since their father works at the nearby mines there . Chapter 4 - Completion - New Friends , New Partnerships . Klaus and the player arrive in New Domino City . There , the player meets a mysterious woman named Misaki who happens to know his / her name . Misaki duels the player to test their ability , and then leads them into her garage . There , the player meets up with Toru , who proposes that the three of them form a Riding Team . However , the player ' s current Duel Runner is in no condition for a Turbo Duel , and Misaki recommends that they replace the vital parts - the CPU , engine , and frame . The player is first pointed to Bootleg for leads on Duel Runner parts . There , the owner offers information if the player solves three of his five Duel Puzzles . Upon completion , the owner points the player to Blister ' s apartment , where the player receives the Duel Runner ' s CPU . Blister mentions that thrown - out parts also can be found in the underground duel arena , which is where the player finds the engine . Upon returning to Misaki ' s garage , Misaki says that she found a frame in a locked - out scrapyard . The player heads there , only to find Blister and Bolt opening the gate to the scrapyard . Despite the fact that the frame is about to be thrown out with the rest of the scrap pile , Bolt is reluctant to give the frame away , and proposes a Tag Duel for the frame . With the Duel Runner complete , Toru and the player decide to test it out the next day via a Turbo Duel . After the duel ends , Primo sees the Grand Design appearing . Lester and Jakob say he must have imagined the event , as it is not time for that yet . Back at the highway , Breo appears , infuriated at the player for using his practice course . He challenges the player to a race , and backs down when defeated . However , Toru and Misaki have pushed their Duel Runners too hard during the race and thus their machines need repairing . Just then , Crow bumps into the player , remembering him / her from their meeting at Satellite . Crow offers to get Yusei to fix the Duel Runners . While Yusei prepares the parts for repairs , Klaus rushes in with a message of distress from Nico and West . As only the player ' s Duel Runner is functional , the player first sets off to Crash Town to settle the situation . Chapter 5 - Going Home - Memories Long Past and a Hand of Hope . Back at Crash Town , the player finds West and Nico at their hideout . The kids ' father , Sergio , is working under Malcolm , and he never came back home . The player decided to pay Malcolm a visit to ask about the kids ' father . At Malcolm ' s house , the player duels with Seluga in order to meet Malcolm . Malcolm , having watched the duel , tests the player himself and is impressed with the player ' s skills . He offers the player to duel under him in exchange for information on Sergio . The next day , the player duels against Kalin , who is working under Ramon . After defeating Kalin , Yusei rushes out from the flower shop , telling them that they must escape the town . He requested help from Barbara . However , she revealed that she is in fact working with Malcolm , and has no intention of helping them . Upon hearing that Lawton is returning from his training , Ramon leaves . Yusei , Kalin , and the player are captured and sent to work in the mine so that they will not disturb Malcolm ' s control over the town . While there , they meet Sergio . Yusei finds a path that leads outside , and the group decides to escape from the mine . While escaping , Sergio saves Kalin from a stray rockfall , and falls into the abyss of the mines . The trio meets Toru and Misaki after escaping from the mine . They inform the trio that Malcolm and Radley are at war . They then return to town in an attempt to quell the warring factions and look for the kids . After defeating Malcolm and Radley , Lawton appears and seizes control of the entire town . While the player and Kalin team up to defeat him in a duel , Lawton states that his loss makes no difference to the fact that he now has the whole town under his command . Lawton attempts to rally his lackeys , only to find that they have all been beaten by Jack and Crow . He attempts to escape , only to be cornered by Toru and Misaki . Lawton , along with the other gangsters of Crash Town , are arrested by Trudge and Mina . Peace is restored to the village , and it is renamed Satisfaction Town . Chapter 6 - Changes - Preparing for the Tournament and a Looming Shadow . The player , Toru and Misaki decide to take part in the WRGP . After deciding on a team name , they start maintenance on their Duel Runners . They found the same tools left behind by Yusei , and ask the player to return the tools . After returning the tools at Yusei ' s garage , Trudge and Mina pay Yusei a visit , as well as informing them about a mysterious turbo duelist Ghost . Yusei also introduces the player to Bruno . After returning to Toru ' s garage , the team decide to test run their duel runner on the highway . However , the player encounters Ghost , and is forced to duel him while witnessing the power of Meklord Emperor Wisel . After winning , Ghost leaves the highway . Toru and Misaki warn the player to be careful . Back at the garage , Crow introduces the team to Akiza , a newly initiated Turbo Duelist . They decide to have a few Turbo Duels with each other to let Akiza get the hang of Turbo Duels and her Duel Runner . While racing , a mysterious Turbo Duelist appears and tells the player that he / she has to evolve his / her Synchro Summon in order to defeat the Meklords . The Turbo Duelist then leaves without a word . A few days later , Klaus complains about Toru ' s duel runner being noisy at night . The player goes off to investigate , only to find that Toru ' s Duel Runner is stolen . As the player relays the information to Yusei , he / she also finds out that Jack ' s Duel Runner is also stolen . Trudge and Mina inform the player of a sudden recent surge of Duel Runner parts on sale in Satellite , and the player sets off to investigate this . He / she goes to the shop that sold him / her fake parts years ago , and duels the shopkeeper for information on the Duel Runner parts . He reveals that he bought the parts from Syd . At the port , the player overhears two of Syd ' s henchmen , Ida and Kameno talking about selling Jack ' s duel runner . Upon getting discovered , Jack arrives and helps the player defeat Syd and his henchmen . Syd tries to escape , but is thwarted and taken away by Mina and Trudge . They help to send Toru ' s and Jack ' s Duel Runners back to their garage . Several days later , at the garage , Akiza arrives , looking for opponents to spar with . Misaki , however , is busy working on a new duel runner program . Akiza mentions that Bruno can help with his skill in programming , and expresses her annoyance at how Yusei has been dedicating his time to working with Bruno . Bruno agrees to assist with the program , and Yusei goes off to apologize to Akiza . As the player leaves , he / she meets Leo and Luna who happen to be looking for Yusei . Jack also mentions that Bruno has finished the program for his team . The next day , the team decide to test the new Start Dash program at the combat lane . However , Jack shows up and forces the player to duel with him . After defeating him , it is revealed that the opponent is actually an imposter . The real Jack shows up and decides to hunt down the culprit . Meanwhile , the Grand Design appears , and the Three Pure Nobles start to put their plan into action . Final Chapter - To the Future - State of the WRGP and the World . The WRGP finally begins . In the first match against Team Unicorn , Breo defeats Toru by causing him to Deck - out . Misaki defeats Breo , but is defeated by Andre . The player then duels with Andre , and eventually Jean , and win the first round . The next day , the team goes against Team Catastrophe . Toru defeats the first duelist , Hans . Hermann , the second duelist , causes Toru to crash his Duel Runner . The player take over Toru , and defeated Hermann and the last duelist , Nicolas . Nicolas , however , tries to crash the player ' s Duel Runner , but he ends up crashing instead due to Primo . The next day , Yusei congratulates the team on winning the first two rounds . He informs the player that Crow is practicing on the highway , and the player goes to practice with him . While riding on the highway , the player is transported into a desert with a large stone tablet is in front of him / her . After hearing a voice , he / she is given a " Blank Card " . The Emperors notice this and wonder why the player would be subject to this . The next day , Toru and the player are training when suddenly the city is invaded by many Ghost s . Misaki , sensing this , transforms into the mysterious Turbo Duelist from before and drives off . The player is being chased by a group of Ghosts , who activates the Battle Royal mode . After escaping from the group of Ghosts , the player meets Primo , who combines with his Duel Runner and challenges the player , while the player ' s companions step up to take care of the remaining Ghosts . After Primo is defeated , Jakob and Lester appear to the player , Yusei and Jack , and explain their intention of changing the future by destroying New Domino City . When Jack and Yusei express their discontent with this future , Jakob tells them to continue winning in the WRGP to see if they truly can avert this fate . Back at the garage , the group finds out that the history had been altered . A new team , Team New World , is participating in the WRGP . With Toru and Crow injured from the Diablo attack , Yusei , Jack and the player form a new Team 5D ' s to participate in the WRGP . During the day of the WRGP , the team is up against Team Sherry , a team with only two members . Sherry LeBlanc , the team leader , explains that she is after Iliaster for revenge . After Yusei is defeated by Elsworth , the player takes over for him and defeats both Elsworth and Sherry . Sherry decides that her desire for revenge alone is not enough , and encourages Team 5D ' s to take down Iliaster . Before the next race , the player is greeted with a heated argument between Jack and Harald . Harald mentions that his team , Team Ragnarok , are destined to defeat the Iliaster , but they refuse to work with Team 5D ' s due to Yusei ' s past . The team faces off against Team Ragnarok . Dragan manages to defeat Jack . The player , however , defeats Dragan , and eventually Brave and Harald , thus defeating Team Ragnarok . Harald , too , encourages Team 5D ' s to take up their cause of defeating Iliaster . The next day , the final round of the WRGP against Team New World begins . Primo defeats both Yusei and Jack without even taking a scratch . When it is the player ' s turn , the " Blank Card " turns into three Synchro Monster Cards : " Ally of Justice Decisive Armor " , " Trident Dragion " and " Trishula , Dragon of the Ice Barrier " . The game then takes the player to the Deck Edit menu , granting them the opportunity to add these new cards to the Deck . With Team 5D ' s cheering on , the player continues to defeat the entire Team New World on their own . The player reappears with Lester and Primo inside the room inside the Divine Temple in which Z - one is seen in in the " Yu - Gi - Oh ! 5D ' s " anime . Having seen humanity ' s potential , Team New World resigns from their plan to destroy New Domino City and tells the player to carve their own future . The player reappears in the pits , with the Blank Card returning to its original state . Then , after discussing the future with Yusei and Jack , Team 5D ' s does a victory lap . The game skips forward a few days and the player ' s WRGP team are talking about their futures . The player goes to the pits , where Toru begins dueling Crow in an exclusive final round of the WRGP . Misaki turns to the player and a picture of Misaki smiling appears on the top screen . She thanks the player for saving the future - The credits roll , and the game ends . Special rules . In the 5D ' s Story Mode , some duels have special rules , a condition that is applied to both players or one of them . The following Special Rules are applied : WRGP Duels . The WRGP rules are similar to the anime . When a player loses , the next player will take over and retain the same cards on the field . The winning player ' s Deck is not shuffled , meaning the first Duelist in each WRGP Duel will always draw the same cards . If a player draws the five " Exodia " pieces they will instantly win all of the battles against the team . However , if a card like " Speed Spell - Gold Sarcophagus " is used , and the current opponent loses before the card is added to the controller ' s hand , it will not be added , after the correct turn count . Locations . Two maps are used to navigate through locations ; the main map and the Satisfaction Town map . Each map has an icon in the bottom left to swap between maps The icon does not represent where one location is on the other map . Locations in the game on the main map include : Locations in the game on Satisfaction Town ' s map include : Promotional cards . A set of three promotional cards are included with the game . These cards were used by Sherry LeBlanc ( hence the french names ) in the " Yu - Gi - Oh ! 5D ' s " anime and are as follows : Blue Rose Dragon is a promotional card with the " Yu - Gi - Oh ! 5D ' s World Championship 2011 - Over the Nexus Strategy Guide " .