the corresponding Java mode, the script takes a basename of a compact alignment as input. GobyAlignmentToText.py <basename> GobyCompactToFasta.py Converts a Goby compact reads file to FASTA or FASTQ format. It is similar to the Java mode “ compact-to-fasta “. GobyCompactToFasta.py [-f|--format <fasta|fastq>] [-o|--output <output-filename>] <filename> GobyReadsStats.py Scan a Goby compact reads