“ alignment-to-text “. Similar to the corresponding Java mode, the script takes a basename of a compact alignment as input. GobyAlignmentToText <basename> GobyFastaToCompact.cc Converts a FASTA or FASTQ file to the Goby “compact” format. It is similar to the Java mode “ fasta-to-compact “. GobyFastaToCompact input1 input2 ... inputN GobyReadsStats.cc Scan