mtybilly/Instruct2DS huggingface dataset:
Characterizing neural dependencies with copula models
Authors: Pietro Berkes, Frank Wood, Jonathan W. Pillow
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: The coding of information by neural populations depends critically on the statistical dependencies between neuronal responses. However, there is no simple model that combines the observations that (1) marginal distributions over single-neuron spike counts are often approximately Poisson; and (2) joint distributions over the responses of multiple neurons are often strongly dependent. Here, we show that both marginal and joint properties of neural responses can be captured using Poisson copula models. Copulas are joint distributions that allow random variables with arbitrary marginals to be combined while incorporating arbitrary dependencies between them. Different copulas capture different kinds of dependencies, allowing for a richer and more detailed description of dependencies than traditional summary statistics, such as correlation coefficients. We explore a variety of Poisson copula models for joint neural response distributions, and derive an efficient maximum likelihood procedure for estimating them. We apply these models to neuronal data collected in and macaque motor cortex, and quantify the improvement in coding accuracy afforded by incorporating the dependency structure between pairs of neurons.
Learning with Consistency between Inductive Functions and Kernels
Authors: Haixuan Yang, Irwin King, Michael Lyu
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Regularized Least Squares (RLS) algorithms have the ability to avoid over-fitting problems and to express solutions as kernel expansions. However, we observe that the current RLS algorithms cannot provide a satisfactory interpretation even on a constant function. On the other hand, while kernel-based algorithms have been developed in such a tendency that almost all learning algorithms are kernelized or being kernelized, a basic fact is often ignored: The learned function from the data and the kernel fits the data well, but may not be consistent with the kernel. Based on these considerations and on the intuition that a good kernel-based inductive function should be consistent with both the data and the kernel, a novel learning scheme is proposed. The advantages of this scheme lie in its corresponding Representer Theorem, its strong interpretation ability about what kind of functions should not be penalized, and its promising accuracy improvements shown in a number of experiments. Furthermore, we provide a detailed technical description about heat kernels, which serves as an example for the readers to apply similar techniques for other kernels. Our work provides a preliminary step in a new direction to explore the varying consistency between inductive functions and kernels under various distributions.
Syntactic Topic Models
Authors: Jordan L. Boyd-graber, David M. Blei
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We develop \name\ (STM), a nonparametric Bayesian model of parsed documents. \Shortname\ generates words that are both thematically and syntactically constrained, which combines the semantic insights of topic models with the syntactic information available from parse trees. Each word of a sentence is generated by a distribution that combines document-specific topic weights and parse-tree specific syntactic transitions. Words are assumed generated in an order that respects the parse tree. We derive an approximate posterior inference method based on variational methods for hierarchical Dirichlet processes, and we report qualitative and quantitative results on both synthetic data and hand-parsed documents.
A general framework for investigating how far the decoding process in the brain can be simplified
Authors: Masafumi Oizumi, Toshiyuki Ishii, Kazuya Ishibashi, Toshihiko Hosoya, Masato Okada
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: ``How is information decoded in the brain?'' is one of the most difficult and important questions in neuroscience. Whether neural correlation is important or not in decoding neural activities is of special interest. We have developed a general framework for investigating how far the decoding process in the brain can be simplified. First, we hierarchically construct simplified probabilistic models of neural responses that ignore more than $K$th-order correlations by using a maximum entropy principle. Then, we compute how much information is lost when information is decoded using the simplified models, i.e., ``mismatched decoders''. We introduce an information theoretically correct quantity for evaluating the information obtained by mismatched decoders. We applied our proposed framework to spike data for vertebrate retina. We used 100-ms natural movies as stimuli and computed the information contained in neural activities about these movies. We found that the information loss is negligibly small in population activities of ganglion cells even if all orders of correlation are ignored in decoding. We also found that if we assume stationarity for long durations in the information analysis of dynamically changing stimuli like natural movies, pseudo correlations seem to carry a large portion of the information.
Signal-to-Noise Ratio Analysis of Policy Gradient Algorithms
Authors: John W. Roberts, Russ Tedrake
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Policy gradient (PG) reinforcement learning algorithms have strong (local) convergence guarantees, but their learning performance is typically limited by a large variance in the estimate of the gradient. In this paper, we formulate the variance reduction problem by describing a signal-to-noise ratio (SNR) for policy gradient algorithms, and evaluate this SNR carefully for the popular Weight Perturbation (WP) algorithm. We confirm that SNR is a good predictor of long-term learning performance, and that in our episodic formulation, the cost-to-go function is indeed the optimal baseline. We then propose two modifications to traditional model-free policy gradient algorithms in order to optimize the SNR. First, we examine WP using anisotropic sampling distributions, which introduces a bias into the update but increases the SNR; this bias can be interpretted as following the natural gradient of the cost function. Second, we show that non-Gaussian distributions can also increase the SNR, and argue that the optimal isotropic distribution is a âshellâ distribution with a constant magnitude and uniform distribution in direction. We demonstrate that both modifications produce substantial improvements in learning performance in challenging policy gradient experiments.
Artificial Olfactory Brain for Mixture Identification
Authors: Mehmet K. Muezzinoglu, Alexander Vergara, Ramon Huerta, Thomas Nowotny, Nikolai Rulkov, Henry Abarbanel, Allen Selverston, Mikhail Rabinovich
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: The odor transduction process has a large time constant and is susceptible to various types of noise. Therefore, the olfactory code at the sensor/receptor level is in general a slow and highly variable indicator of the input odor in both natural and artificial situations. Insects overcome this problem by using a neuronal device in their Antennal Lobe (AL), which transforms the identity code of olfactory receptors to a spatio-temporal code. This transformation improves the decision of the Mushroom Bodies (MBs), the subsequent classifier, in both speed and accuracy.Here we propose a rate model based on two intrinsic mechanisms in the insect AL, namely integration and inhibition. Then we present a MB classifier model that resembles the sparse and random structure of insect MB. A local Hebbian learning procedure governs the plasticity in the model. These formulations not only help to understand the signal conditioning and classification methods of insect olfactory systems, but also can be leveraged in synthetic problems. Among them, we consider here the discrimination of odor mixtures from pure odors. We show on a set of records from metal-oxide gas sensors that the cascade of these two new models facilitates fast and accurate discrimination of even highly imbalanced mixtures from pure odors.
Robust Kernel Principal Component Analysis
Authors: Minh H. Nguyen, Fernando Torre
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Kernel Principal Component Analysis (KPCA) is a popular generalization of linear PCA that allows non-linear feature extraction. In KPCA, data in the input space is mapped to higher (usually) dimensional feature space where the data can be linearly modeled. The feature space is typically induced implicitly by a kernel function, and linear PCA in the feature space is performed via the kernel trick. However, due to the implicitness of the feature space, some extensions of PCA such as robust PCA cannot be directly generalized to KPCA. This paper presents a technique to overcome this problem, and extends it to a unified framework for treating noise, missing data, and outliers in KPCA. Our method is based on a novel cost function to perform inference in KPCA. Extensive experiments, in both synthetic and real data, show that our algorithm outperforms existing methods.
Relative Margin Machines
Authors: Tony Jebara, Pannagadatta K. Shivaswamy
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: In classification problems, Support Vector Machines maximize the margin of separation between two classes. While the paradigm has been successful, the solution obtained by SVMs is dominated by the directions with large data spread and biased to separate the classes by cutting along large spread directions. This article proposes a novel formulation to overcome such sensitivity and maximizes the margin relative to the spread of the data. The proposed formulation can be efficiently solved and experiments on digit datasets show drastic performance improvements over SVMs.
Bayesian Kernel Shaping for Learning Control
Authors: Jo-anne Ting, Mrinal Kalakrishnan, Sethu Vijayakumar, Stefan Schaal
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: In kernel-based regression learning, optimizing each kernel individually is useful when the data density, curvature of regression surfaces (or decision boundaries) or magnitude of output noise (i.e., heteroscedasticity) varies spatially. Unfortunately, it presents a complex computational problem as the danger of overfitting is high and the individual optimization of every kernel in a learning system may be overly expensive due to the introduction of too many open learning parameters. Previous work has suggested gradient descent techniques or complex statistical hypothesis methods for local kernel shaping, typically requiring some amount of manual tuning of meta parameters. In this paper, we focus on nonparametric regression and introduce a Bayesian formulation that, with the help of variational approximations, results in an EM-like algorithm for simultaneous estimation of regression and kernel parameters. The algorithm is computationally efficient (suitable for large data sets), requires no sampling, automatically rejects outliers and has only one prior to be specified. It can be used for nonparametric regression with local polynomials or as a novel method to achieve nonstationary regression with Gaussian Processes. Our methods are particularly useful for learning control, where reliable estimation of local tangent planes is essential for adaptive controllers and reinforcement learning. We evaluate our methods on several synthetic data sets and on an actual robot which learns a task-level control law.
An Extended Level Method for Efficient Multiple Kernel Learning
Authors: Zenglin Xu, Rong Jin, Irwin King, Michael Lyu
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We consider the problem of multiple kernel learning (MKL), which can be formulated as a convex-concave problem. In the past, two efficient methods, i.e., Semi-Infinite Linear Programming (SILP) and Subgradient Descent (SD), have been proposed for large-scale multiple kernel learning. Despite their success, both methods have their own shortcomings: (a) the SD method utilizes the gradient of only the current solution, and (b) the SILP method does not regularize the approximate solution obtained from the cutting plane model. In this work, we extend the level method, which was originally designed for optimizing non-smooth objective functions, to convex-concave optimization, and apply it to multiple kernel learning. The extended level method overcomes the drawbacks of SILP and SD by exploiting all the gradients computed in past iterations and by regularizing the solution via a projection to a level set. Empirical study with eight UCI datasets shows that the extended level method can significantly improve efficiency by saving on average 91.9% of computational time over the SILP method and 70.3% over the SD method.
Sparse Online Learning via Truncated Gradient
Authors: John Langford, Lihong Li, Tong Zhang
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We propose a general method called truncated gradient to induce sparsity in the weights of online-learning algorithms with convex loss. This method has several essential properties. First, the degree of sparsity is continuous---a parameter controls the rate of sparsification from no sparsification to total sparsification. Second, the approach is theoretically motivated, and an instance of it can be regarded as an online counterpart of the popular $L_1$-regularization method in the batch setting. We prove that small rates of sparsification result in only small additional regret with respect to typical online-learning guarantees. Finally, the approach works well empirically. We apply it to several datasets and find that for datasets with large numbers of features, substantial sparsity is discoverable.
Bayesian Model of Behaviour in Economic Games
Authors: Debajyoti Ray, Brooks King-casas, P. R. Montague, Peter Dayan
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Classical Game Theoretic approaches that make strong rationality assumptions have difficulty modeling observed behaviour in Economic games of human subjects. We investigate the role of finite levels of iterated reasoning and non-selfish utility functions in a Partially Observable Markov Decision Process model that incorporates Game Theoretic notions of interactivity. Our generative model captures a broad class of characteristic behaviours in a multi-round Investment game. We invert the generative process for a recognition model that is used to classify 200 subjects playing an Investor-Trustee game against randomly matched opponents.
Skill Characterization Based on Betweenness
Authors: Ozgur Simsek, Andrew G. Barto
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We present a characterization of a useful class of skills based on a graphical representation of an agent's interaction with its environment. Our characterization uses betweenness, a measure of centrality on graphs. It may be used directly to form a set of skills suitable for a given environment. More importantly, it serves as a useful guide for developing online, incremental skill discovery algorithms that do not rely on knowing or representing the environment graph in its entirety.
Improved Moves for Truncated Convex Models
Authors: Philip Torr, M. P. Kumar
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We consider the problem of obtaining the approximate maximum a posteriori estimate of a discrete random field characterized by pairwise potentials that form a truncated convex model. For this problem, we propose an improved st-mincut based move making algorithm. Unlike previous move making approaches, which either provide a loose bound or no bound on the quality of the solution (in terms of the corresponding Gibbs energy), our algorithm achieves the same guarantees as the standard linear programming (LP) relaxation. Compared to previous approaches based on the LP relaxation, e.g. interior-point algorithms or tree-reweighted message passing (TRW), our method is faster as it uses only the efficient st-mincut algorithm in its design. Furthermore, it directly provides us with a primal solution (unlike TRW and other related methods which attempt to solve the dual of the LP). We demonstrate the effectiveness of the proposed approach on both synthetic and standard real data problems. Our analysis also opens up an interesting question regarding the relationship between move making algorithms (such as $\alpha$-expansion and the algorithms presented in this paper) and the randomized rounding schemes used with convex relaxations. We believe that further explorations in this direction would help design efficient algorithms for more complex relaxations.
Kernelized Sorting
Authors: Novi Quadrianto, Le Song, Alex J. Smola
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Object matching is a fundamental operation in data analysis. It typically requires the definition of a similarity measure between the classes of objects to be matched. Instead, we develop an approach which is able to perform matching by requiring a similarity measure only within each of the classes. This is achieved by maximizing the dependency between matched pairs of observations by means of the Hilbert Schmidt Independence Criterion. This problem can be cast as one of maximizing a quadratic assignment problem with special structure and we present a simple algorithm for finding a locally optimal solution.
Posterior Consistency of the Silverman g-prior in Bayesian Model Choice
Authors: Zhihua Zhang, Michael I. Jordan, Dit-Yan Yeung
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Kernel supervised learning methods can be unified by utilizing the tools from regularization theory. The duality between regularization and prior leads to interpreting regularization methods in terms of maximum a posteriori estimation and has motivated Bayesian interpretations of kernel methods. In this paper we pursue a Bayesian interpretation of sparsity in the kernel setting by making use of a mixture of a point-mass distribution and prior that we refer to as ``Silverman's g-prior.'' We provide a theoretical analysis of the posterior consistency of a Bayesian model choice procedure based on this prior. We also establish the asymptotic relationship between this procedure and the Bayesian information criterion.
Nonparametric Bayesian Learning of Switching Linear Dynamical Systems
Authors: Emily B. Fox, Erik B. Sudderth, Michael I. Jordan, Alan S. Willsky
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Many nonlinear dynamical phenomena can be effectively modeled by a system that switches among a set of conditionally linear dynamical modes. We consider two such models: the switching linear dynamical system (SLDS) and the switching vector autoregressive (VAR) process. In this paper, we present a nonparametric approach to the learning of an unknown number of persistent, smooth dynamical modes by utilizing a hierarchical Dirichlet process prior. We develop a sampling algorithm that combines a truncated approximation to the Dirichlet process with an efficient joint sampling of the mode and state sequences. The utility and flexibility of our model are demonstrated on synthetic data, sequences of dancing honey bees, and the IBOVESPA stock index.
Learning to Use Working Memory in Partially Observable Environments through Dopaminergic Reinforcement
Authors: Michael T. Todd, Yael Niv, Jonathan D. Cohen
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Working memory is a central topic of cognitive neuroscience because it is critical for solving real world problems in which information from multiple temporally distant sources must be combined to generate appropriate behavior. However, an often neglected fact is that learning to use working memory effectively is itself a difficult problem. The Gating" framework is a collection of psychological models that show how dopamine can train the basal ganglia and prefrontal cortex to form useful working memory representations in certain types of problems. We bring together gating with ideas from machine learning about using finite memory systems in more general problems. Thus we present a normative Gating model that learns, by online temporal difference methods, to use working memory to maximize discounted future rewards in general partially observable settings. The model successfully solves a benchmark working memory problem, and exhibits limitations similar to those observed in human experiments. Moreover, the model introduces a concise, normative definition of high level cognitive concepts such as working memory and cognitive control in terms of maximizing discounted future rewards."
Optimization on a Budget: A Reinforcement Learning Approach
Authors: Paul L. Ruvolo, Ian Fasel, Javier R. Movellan
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Many popular optimization algorithms, like the Levenberg-Marquardt algorithm (LMA), use heuristic-based controllers'' that modulate the behavior of the optimizer during the optimization process. For example, in the LMA a damping parameter is dynamically modified based on a set rules that were developed using various heuristic arguments. Reinforcement learning (RL) is a machine learning approach to learn optimal controllers by examples and thus is an obvious candidate to improve the heuristic-based controllers implicit in the most popular and heavily used optimization algorithms. Improving the performance of off-the-shelf optimizers is particularly important for time-constrained optimization problems. For example the LMA algorithm has become popular for many real-time computer vision problems, including object tracking from video, where only a small amount of time can be allocated to the optimizer on each incoming video frame. Here we show that a popular modern reinforcement learning technique using a very simply state space can dramatically improve the performance of general purpose optimizers, like the LMA. Most surprisingly the controllers learned for a particular domain appear to work very well also on very different optimization domains. For example we used RL methods to train a new controller for the damping parameter of the LMA. This controller was trained on a collection of classic, relatively small, non-linear regression problems. The modified LMA performed better than the standard LMA on these problems. Most surprisingly, it also dramatically outperformed the standard LMA on a difficult large scale computer vision problem for which it had not been trained before. Thus the controller appeared to have extracted control rules that were not just domain specific but generalized across a wide range of optimization domains."
Dependent Dirichlet Process Spike Sorting
Authors: Jan Gasthaus, Frank Wood, Dilan Gorur, Yee W. Teh
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: In this paper we propose a new incremental spike sorting model that automatically eliminates refractory period violations, accounts for action potential waveform drift, and can handle appearance" and "disappearance" of neurons. Our approach is to augment a known time-varying Dirichlet process that ties together a sequence of infinite Gaussian mixture models, one per action potential waveform observation, with an interspike-interval-dependent likelihood that prohibits refractory period violations. We demonstrate this model by showing results from sorting two publicly available neural data recordings for which the a partial ground truth labeling is known."
The Recurrent Temporal Restricted Boltzmann Machine
Authors: Ilya Sutskever, Geoffrey E. Hinton, Graham W. Taylor
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: The Temporal Restricted Boltzmann Machine (TRBM) is a probabilistic model for sequences that is able to successfully model (i.e., generate nice-looking samples of) several very high dimensional sequences, such as motion capture data and the pixels of low resolution videos of balls bouncing in a box. The major disadvantage of the TRBM is that exact inference is extremely hard, since even computing a Gibbs update for a single variable of the posterior is exponentially expensive. This difficulty has necessitated the use of a heuristic inference procedure, that nonetheless was accurate enough for successful learning. In this paper we introduce the Recurrent TRBM, which is a very slight modification of the TRBM for which exact inference is very easy and exact gradient learning is almost tractable. We demonstrate that the RTRBM is better than an analogous TRBM at generating motion capture and videos of bouncing balls.
Short-Term Depression in VLSI Stochastic Synapse
Authors: Peng Xu, Timothy K. Horiuchi, Pamela A. Abshire
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We report a compact realization of short-term depression (STD) in a VLSI stochastic synapse. The behavior of the circuit is based on a subtractive single release model of STD. Experimental results agree well with simulation and exhibit expected STD behavior: the transmitted spike train has negative autocorrelation and lower power spectral density at low frequencies which can remove redundancy in the input spike train, and the mean transmission probability is inversely proportional to the input spike rate which has been suggested as an automatic gain control mechanism in neural systems. The dynamic stochastic synapse could potentially be a powerful addition to existing deterministic VLSI spiking neural systems.
Generative and Discriminative Learning with Unknown Labeling Bias
Authors: Steven J. Phillips, Miroslav Dudík
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We apply robust Bayesian decision theory to improve both generative and discriminative learners under bias in class proportions in labeled training data, when the true class proportions are unknown. For the generative case, we derive an entropy-based weighting that maximizes expected log likelihood under the worst-case true class proportions. For the discriminative case, we derive a multinomial logistic model that minimizes worst-case conditional log loss. We apply our theory to the modeling of species geographic distributions from presence data, an extreme case of label bias since there is no absence data. On a benchmark dataset, we find that entropy-based weighting offers an improvement over constant estimates of class proportions, consistently reducing log loss on unbiased test data.
Large Margin Taxonomy Embedding for Document Categorization
Authors: Kilian Q. Weinberger, Olivier Chapelle
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Applications of multi-class classification, such as document categorization, often appear in cost-sensitive settings. Recent work has significantly improved the state of the art by moving beyond ``flat'' classification through incorporation of class hierarchies [Cai and Hoffman 04]. We present a novel algorithm that goes beyond hierarchical classification and estimates the latent semantic space that underlies the class hierarchy. In this space, each class is represented by a prototype and classification is done with the simple nearest neighbor rule. The optimization of the semantic space incorporates large margin constraints that ensure that for each instance the correct class prototype is closer than any other. We show that our optimization is convex and can be solved efficiently for large data sets. Experiments on the OHSUMED medical journal data base yield state-of-the-art results on topic categorization.
Modeling the effects of memory on human online sentence processing with particle filters
Authors: Roger P. Levy, Florencia Reali, Thomas L. Griffiths
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Language comprehension in humans is significantly constrained by memory, yet rapid, highly incremental, and capable of utilizing a wide range of contextual information to resolve ambiguity and form expectations about future input. In contrast, most of the leading psycholinguistic models and fielded algorithms for natural language parsing are non-incremental, have run time superlinear in input length, and/or enforce structural locality constraints on probabilistic dependencies between events. We present a new limited-memory model of sentence comprehension which involves an adaptation of the particle filter, a sequential Monte Carlo method, to the problem of incremental parsing. We show that this model can reproduce classic results in online sentence comprehension, and that it naturally provides the first rational account of an outstanding problem in psycholinguistics, in which the preferred alternative in a syntactic ambiguity seems to grow more attractive over time even in the absence of strong disambiguating information.
Clusters and Coarse Partitions in LP Relaxations
Authors: David Sontag, Amir Globerson, Tommi S. Jaakkola
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We propose a new class of consistency constraints for Linear Programming (LP) relaxations for finding the most probable (MAP) configuration in graphical models. Usual cluster-based LP relaxations enforce joint consistency of the beliefs of a cluster of variables, with computational cost increasing exponentially with the size of the clusters. By partitioning the state space of a cluster and enforcing consistency only across partitions, we obtain a class of constraints which, although less tight, are computationally feasible for large clusters. We show how to solve the cluster selection and partitioning problem monotonically in the dual LP, using the current beliefs to guide these choices. We obtain a dual message-passing algorithm and apply it to protein design problems where the variables have large state spaces and the usual cluster-based relaxations are very costly.
Bounds on marginal probability distributions
Authors: Joris M. Mooij, Hilbert J. Kappen
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We propose a novel bound on single-variable marginal probability distributions in factor graphs with discrete variables. The bound is obtained by propagating bounds (convex sets of probability distributions) over a subtree of the factor graph, rooted in the variable of interest. By construction, the method not only bounds the exact marginal probability distribution of a variable, but also its approximate Belief Propagation marginal (``belief''). Thus, apart from providing a practical means to calculate bounds on marginals, our contribution also lies in providing a better understanding of the error made by Belief Propagation. We show that our bound outperforms the state-of-the-art on some inference problems arising in medical diagnosis.
Relative Performance Guarantees for Approximate Inference in Latent Dirichlet Allocation
Authors: Indraneel Mukherjee, David M. Blei
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Hierarchical probabilistic modeling of discrete data has emerged as a powerful tool for text analysis. Posterior inference in such models is intractable, and practitioners rely on approximate posterior inference methods such as variational inference or Gibbs sampling. There has been much research in designing better approximations, but there is yet little theoretical understanding of which of the available techniques are appropriate, and in which data analysis settings. In this paper we provide the beginnings of such understanding. We analyze the improvement that the recently proposed collapsed variational inference (CVB) provides over mean field variational inference (VB) in latent Dirichlet allocation. We prove that the difference in the tightness of the bound on the likelihood of a document decreases as $O(k-1) + \log m /m$, where $k$ is the number of topics in the model and $m$ is the number of words in a document. As a consequence, the advantage of CVB over VB is lost for long documents but increases with the number of topics. We demonstrate empirically that the theory holds, using simulated text data and two text corpora. We provide practical guidelines for choosing an approximation.
MCBoost: Multiple Classifier Boosting for Perceptual Co-clustering of Images and Visual Features
Authors: Tae-kyun Kim, Roberto Cipolla
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We present a new co-clustering problem of images and visual features. The problem involves a set of non-object images in addition to a set of object images and features to be co-clustered. Co-clustering is performed in a way of maximising discrimination of object images from non-object images, thus emphasizing discriminative features. This provides a way of obtaining perceptual joint-clusters of object images and features. We tackle the problem by simultaneously boosting multiple strong classifiers which compete for images by their expertise. Each boosting classifier is an aggregation of weak-learners, i.e. simple visual features. The obtained classifiers are useful for multi-category and multi-view object detection tasks. Experiments on a set of pedestrian images and a face data set demonstrate that the method yields intuitive image clusters with associated features and is much superior to conventional boosting classifiers in object detection tasks.
Dependence of Orientation Tuning on Recurrent Excitation and Inhibition in a Network Model of V1
Authors: Klaus Wimmer, Marcel Stimberg, Robert Martin, Lars Schwabe, Jorge Mariño, James Schummers, David C. Lyon, Mriganka Sur, Klaus Obermayer
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: One major role of primary visual cortex (V1) in vision is the encoding of the orientation of lines and contours. The role of the local recurrent network in these computations is, however, still a matter of debate. To address this issue, we analyze intracellular recording data of cat V1, which combine measuring the tuning of a range of neuronal properties with a precise localization of the recording sites in the orientation preference map. For the analysis, we consider a network model of Hodgkin-Huxley type neurons arranged according to a biologically plausible two-dimensional topographic orientation preference map. We then systematically vary the strength of the recurrent excitation and inhibition relative to the strength of the afferent input. Each parametrization gives rise to a different model instance for which the tuning of model neurons at different locations of the orientation map is compared to the experimentally measured orientation tuning of membrane potential, spike output, excitatory, and inhibitory conductances. A quantitative analysis shows that the data provides strong evidence for a network model in which the afferent input is dominated by strong, balanced contributions of recurrent excitation and inhibition. This recurrent regime is close to a regime of 'instability', where strong, self-sustained activity of the network occurs. The firing rate of neurons in the best-fitting network is particularly sensitive to small modulations of model parameters, which could be one of the functional benefits of a network operating in this particular regime.
An interior-point stochastic approximation method and an L1-regularized delta rule
Authors: Peter Carbonetto, Mark Schmidt, Nando D. Freitas
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: The stochastic approximation method is behind the solution to many important, actively-studied problems in machine learning. Despite its far-reaching application, there is almost no work on applying stochastic approximation to learning problems with constraints. The reason for this, we hypothesize, is that no robust, widely-applicable stochastic approximation method exists for handling such problems. We propose that interior-point methods are a natural solution. We establish the stability of a stochastic interior-point approximation method both analytically and empirically, and demonstrate its utility by deriving an on-line learning algorithm that also performs feature selection via L1 regularization.
Dynamic visual attention: searching for coding length increments
Authors: Xiaodi Hou, Liqing Zhang
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: A visual attention system should respond placidly when common stimuli are presented, while at the same time keep alert to anomalous visual inputs. In this paper, a dynamic visual attention model based on the rarity of features is proposed. We introduce the Incremental Coding Length (ICL) to measure the perspective entropy gain of each feature. The objective of our model is to maximize the entropy of the sampled visual features. In order to optimize energy consumption, the limit amount of energy of the system is re-distributed amongst features according to their Incremental Coding Length. By selecting features with large coding length increments, the computational system can achieve attention selectivity in both static and dynamic scenes. We demonstrate that the proposed model achieves superior accuracy in comparison to mainstream approaches in static saliency map generation. Moreover, we also show that our model captures several less-reported dynamic visual search behaviors, such as attentional swing and inhibition of return.
Phase transitions for high-dimensional joint support recovery
Authors: Sahand Negahban, Martin J. Wainwright
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We consider the following instance of transfer learning: given a pair of regression problems, suppose that the regression coefficients share a partially common support, parameterized by the overlap fraction $\overlap$ between the two supports. This set-up suggests the use of $1, \infty$-regularized linear regression for recovering the support sets of both regression vectors. Our main contribution is to provide a sharp characterization of the sample complexity of this $1,\infty$ relaxation, exactly pinning down the minimal sample size $n$ required for joint support recovery as a function of the model dimension $\pdim$, support size $\spindex$ and overlap $\overlap \in [0,1]$. For measurement matrices drawn from standard Gaussian ensembles, we prove that the joint $1,\infty$-regularized method undergoes a phase transition characterized by order parameter $\orpar(\numobs, \pdim, \spindex, \overlap) = \numobs{(4 - 3 \overlap) s \log(p-(2-\overlap)s)}$. More precisely, the probability of successfully recovering both supports converges to $1$ for scalings such that $\orpar > 1$, and converges to $0$ to scalings for which $\orpar < 1$. An implication of this threshold is that use of $1, \infty$-regularization leads to gains in sample complexity if the overlap parameter is large enough ($\overlap > 2/3$), but performs worse than a naive approach if $\overlap < 2/3$. We illustrate the close agreement between these theoretical predictions, and the actual behavior in simulations. Thus, our results illustrate both the benefits and dangers associated with block-$1,\infty$ regularization in high-dimensional inference.
Online Metric Learning and Fast Similarity Search
Authors: Prateek Jain, Brian Kulis, Inderjit S. Dhillon, Kristen Grauman
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Metric learning algorithms can provide useful distance functions for a variety of domains, and recent work has shown good accuracy for problems where the learner can access all distance constraints at once. However, in many real applications, constraints are only available incrementally, thus necessitating methods that can perform online updates to the learned metric. Existing online algorithms offer bounds on worst-case performance, but typically do not perform well in practice as compared to their offline counterparts. We present a new online metric learning algorithm that updates a learned Mahalanobis metric based on LogDet regularization and gradient descent. We prove theoretical worst-case performance bounds, and empirically compare the proposed method against existing online metric learning algorithms. To further boost the practicality of our approach, we develop an online locality-sensitive hashing scheme which leads to efficient updates for approximate similarity search data structures. We demonstrate our algorithm on multiple datasets and show that it outperforms relevant baselines.
Bayesian Network Score Approximation using a Metagraph Kernel
Authors: Benjamin Yackley, Eduardo Corona, Terran Lane
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Many interesting problems, including Bayesian network structure-search, can be cast in terms of finding the optimum value of a function over the space of graphs. However, this function is often expensive to compute exactly. We here present a method derived from the study of reproducing-kernel Hilbert spaces which takes advantage of the regular structure of the space of all graphs on a fixed number of nodes to obtain approximations to the desired function quickly and with reasonable accuracy. We then test this method on both a small testing set and a real-world Bayesian network; the results suggest that not only is this method reasonably accurate, but that the BDe score itself varies quadratically over the space of all graphs.
Fast Rates for Regularized Objectives
Authors: Karthik Sridharan, Shai Shalev-shwartz, Nathan Srebro
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We show that the empirical minimizer of a stochastic strongly convex objective, where the stochastic component is linear, converges to the population minimizer with rate $O(1/n)$. The result applies, in particular, to the SVM objective. Thus, we get a rate of $O(1/n)$ on the convergence of the SVM objective to its infinite data limit. We demonstrate how this is essential for obtaining tight oracle inequalities for SVMs. The results extend also to strong convexity with respect to other $\ellnorm_p$ norms, and so also to objectives regularized using other norms.
Bayesian Synchronous Grammar Induction
Authors: Phil Blunsom, Trevor Cohn, Miles Osborne
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We present a novel method for inducing synchronous context free grammars (SCFGs) from a corpus of parallel string pairs. SCFGs can model equivalence between strings in terms of substitutions, insertions and deletions, and the reordering of sub-strings. We develop a non-parametric Bayesian model and apply it to a machine translation task, using priors to replace the various heuristics commonly used in this field. Using a variational Bayes training procedure, we learn the latent structure of translation equivalence through the induction of synchronous grammar categories for phrasal translations, showing improvements in translation performance over previously proposed maximum likelihood models.
Tracking Changing Stimuli in Continuous Attractor Neural Networks
Authors: K. Wong, Si Wu, Chi Fung
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: Continuous attractor neural networks (CANNs) are emerging as promising models for describing the encoding of continuous stimuli in neural systems. Due to the translational invariance of their neuronal interactions, CANNs can hold a continuous family of neutrally stable states. In this study, we systematically explore how neutral stability of a CANN facilitates its tracking performance, a capacity believed to have wide applications in brain functions. We develop a perturbative approach that utilizes the dominant movement of the network stationary states in the state space. We quantify the distortions of the bump shape during tracking, and study their effects on the tracking performance. Results are obtained on the maximum speed for a moving stimulus to be trackable, and the reaction time to catch up an abrupt change in stimulus.
Gaussian-process factor analysis for low-dimensional single-trial analysis of neural population activity
Authors: Byron M. Yu, John P. Cunningham, Gopal Santhanam, Stephen I. Ryu, Krishna V. Shenoy, Maneesh Sahani
Published in: Advances in Neural Information Processing Systems 21  (NIPS 2008) (Main Conference Track), 2008

Abstract: We consider the problem of extracting smooth low-dimensional neural trajectories'' that summarize the activity recorded simultaneously from tens to hundreds of neurons on individual experimental trials. Beyond the benefit of visualizing the high-dimensional noisy spiking activity in a compact denoised form, such trajectories can offer insight into the dynamics of the neural circuitry underlying the recorded activity. Current methods for extracting neural trajectories involve a two-stage process: the data are firstdenoised'' by smoothing over time, then a static dimensionality reduction technique is applied. We first describe extensions of the two-stage methods that allow the degree of smoothing to be chosen in a principled way, and account for spiking variability that may vary both across neurons and across time. We then present a novel method for extracting neural trajectories, Gaussian-process factor analysis (GPFA), which unifies the smoothing and dimensionality reduction operations in a common probabilistic framework. We applied these methods to the activity of 61 neurons recorded simultaneously in macaque premotor and motor cortices during reach planning and execution. By adopting a goodness-of-fit metric that measures how well the activity of each neuron can be predicted by all other recorded neurons, we found that GPFA provided a better characterization of the population activity than the two-stage methods. From the extracted single-trial neural trajectories, we directly observed a convergence in neural state during motor planning, an effect suggestive of attractor dynamics that was shown indirectly by previous studies.