mtybilly/Instruct2DS huggingface dataset:
Out-of-distribution Generalization in the Presence of Nuisance-Induced Spurious Correlations
Authors: Lily H Zhang, Eric Karl Oermann, Rajesh Ranganath Aahlad Manas Puli
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: In many prediction problems, spurious correlations are induced by a changing relationship between the label and a nuisance variable that is also correlated with the covariates. For example, in classifying animals in natural images, the background, which is a nuisance, can predict the type of animal. This nuisance-label relationship does not always hold, and the performance of a model trained under one such relationship may be poor on data with a different nuisance-label relationship. To build predictive models that perform well regardless of the nuisance-label relationship, we develop Nuisance-Randomized Distillation (NURD). We introduce the nuisance-randomized distribution, a distribution where the nuisance and the label are independent. Under this distribution, we define the set of representations such that conditioning on any member, the nuisance and the label remain independent. We prove that the representations in this set always perform better than chance, while representations outside of this set may not. NURD finds a representation from this set that is most informative of the label under the nuisance-randomized distribution, and we prove that this representation achieves the highest performance regardless of the nuisance-label relationship. We evaluate NURD on several tasks including chest X-ray classification where, using non-lung patches as the nuisance, NURD produces models that predict pneumonia under strong spurious correlations.
Analytic-DPM: an Analytic Estimate of the Optimal Reverse Variance in Diffusion Probabilistic Models
Authors: Chongxuan Li, Jun Zhu, Bo Zhang Fan Bao
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Diffusion probabilistic models (DPMs) represent a class of powerful generative models. Despite their success, the inference of DPMs is expensive since it generally needs to iterate over thousands of timesteps. A key problem in the inference is to estimate the variance in each timestep of the reverse process. In this work, we present a surprising result that both the optimal reverse variance and the corresponding optimal KL divergence of a DPM have analytic forms w.r.t. its score function. Building upon it, we propose \textit{Analytic-DPM}, a training-free inference framework that estimates the analytic forms of the variance and KL divergence using the Monte Carlo method and a pretrained score-based model. Further, to correct the potential bias caused by the score-based model, we derive both lower and upper bounds of the optimal variance and clip the estimate for a better result. Empirically, our analytic-DPM improves the log-likelihood of various DPMs, produces high-quality samples, and meanwhile enjoys a $20\times$ to $80\times$ speed up.
Learning Graphon Mean Field Games and Approximate Nash Equilibria
Authors: Heinz Koeppl Kai Cui
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Recent advances at the intersection of dense large graph limits and mean field games have begun to enable the scalable analysis of a broad class of dynamical sequential games with large numbers of agents. So far, results have been largely limited to graphon mean field systems with continuous-time diffusive or jump dynamics, typically without control and with little focus on computational methods. We propose a novel discrete-time formulation for graphon mean field games as the limit of non-linear dense graph Markov games with weak interaction. On the theoretical side, we give extensive and rigorous existence and approximation properties of the graphon mean field solution in sufficiently large systems. On the practical side we provide general learning schemes for graphon mean field equilibria by either introducing agent equivalence classes or reformulating the graphon mean field system as a classical mean field system. By repeatedly finding a regularized optimal control solution and its generated mean field, we successfully obtain plausible approximate Nash equilibria in otherwise infeasible large dense graph games with many agents. Empirically, we are able to demonstrate on a number of examples that the finite-agent behavior comes increasingly close to the mean field behavior for our computed equilibria as the graph or system size grows, verifying our theory. More generally, we successfully apply policy gradient reinforcement learning in conjunction with sequential Monte Carlo methods.
Neural Spectral Marked Point Processes
Authors: Haoyun Wang, Zheng Dong, Xiuyuan Cheng, Yao Xie Shixiang Zhu
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Self- and mutually-exciting point processes are popular models in machine learning and statistics for dependent discrete event data. To date, most existing models assume stationary kernels (including the classical Hawkes processes) and simple parametric models. Modern applications with complex event data require more general point process models that can incorporate contextual information of the events, called marks, besides the temporal and location information. Moreover, such applications often require non-stationary models to capture more complex spatio-temporal dependence. To tackle these challenges, a key question is to devise a versatile influence kernel in the point process model. In this paper, we introduce a novel and general neural network-based non-stationary influence kernel with high expressiveness for handling complex discrete events data while providing theoretical performance guarantees. We demonstrate the superior performance of our proposed method compared with the state-of-the-art on synthetic and real data.
An Experimental Design Perspective on Model-Based Reinforcement Learning
Authors: Biswajit Paria, Jeff Schneider, Stefano Ermon, Willie Neiswanger Viraj Mehta
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: In many practical applications of RL, it is expensive to observe state transitions from the environment. For example, in the problem of plasma control for nuclear fusion, computing the next state for a given state-action pair requires querying an expensive transition function which can lead to many hours of computer simulation or dollars of scientific research. Such expensive data collection prohibits application of standard RL algorithms which usually require a large number of observations to learn. In this work, we address the problem of efficiently learning a policy while making a minimal number of state-action queries to the transition function. In particular, we leverage ideas from Bayesian optimal experimental design to guide the selection of state-action queries for efficient learning. We propose an \emph{acquisition function} that quantifies how much information a state-action pair would provide about the optimal solution to a Markov decision process. At each iteration, our algorithm maximizes this acquisition function, to choose the most informative state-action pair to be queried, thus yielding a data-efficient RL approach. We experiment with a variety of simulated continuous control problems and show that our approach learns an optimal policy with up to $5$ -- $1,000\times$ less data than model-based RL baselines and $10^3$ -- $10^5\times$ less data than model-free RL baselines. We also provide several ablated comparisons which point to substantial improvements arising from the principled method of obtaining data.
Fast topological clustering with Wasserstein distance
Authors: Bryan M Krause, Matthew I Banks, Kirill V Nourski, Barry D Van Veen Tananun Songdechakraiwut
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: The topological patterns exhibited by many real-world networks motivate the development of topology-based methods for assessing the similarity of networks. However, extracting topological structure is difficult, especially for large and dense networks whose node degrees range over multiple orders of magnitude. In this paper, we propose a novel and computationally practical topological clustering method that clusters complex networks with intricate topology using principled theory from persistent homology and optimal transport. Such networks are aggregated into clusters through a centroid-based clustering strategy based on both their topological and geometric structure, preserving correspondence between nodes in different networks. The notions of topological proximity and centroid are characterized using a novel and efficient approach to computation of the Wasserstein distance and barycenter for persistence barcodes associated with connected components and cycles. The proposed method is demonstrated to be effective using both simulated networks and measured functional brain networks.
Towards Training Billion Parameter Graph Neural Networks for Atomic Simulations
Authors: Abhishek Das, Brandon M Wood, Siddharth Goyal, C. Lawrence Zitnick Anuroop Sriram
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Recent progress in Graph Neural Networks (GNNs) for modeling atomic simulations has the potential to revolutionize catalyst discovery, which is a key step in making progress towards the energy breakthroughs needed to combat climate change. However, the GNNs that have proven most effective for this task are memory intensive as they model higher-order interactions in the graphs such as those between triplets or quadruplets of atoms, making it challenging to scale these models. In this paper, we introduce Graph Parallelism, a method to distribute input graphs across multiple GPUs, enabling us to train very large GNNs with hundreds of millions or billions of parameters. We empirically evaluate our method by scaling up the recently proposed DimeNet++ and GemNet models by over an order of magnitude in the number of parameters. On the large-scale Open Catalyst 2020 (OC20) dataset, these graph-parallelized models lead to relative improvements of 1) 15% on the force MAE metric on the S2EF task and 2) 21% on the AFbT metric on the IS2RS task, establishing new state-of-the-art results.
Efficient Learning of Safe Driving Policy via Human-AI Copilot Optimization
Authors: Zhenghao Peng, Bolei Zhou Quanyi Li
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Human intervention is an effective way to inject human knowledge into the training loop of reinforcement learning, which can bring fast learning and ensured training safety. Given the very limited budget of human intervention, it remains challenging to design when and how human expert interacts with the learning agent in the training. In this work, we develop a novel human-in-the-loop learning method called Human-AI Copilot Optimization (HACO).To allow the agent's sufficient exploration in the risky environments while ensuring the training safety, the human expert can take over the control and demonstrate how to avoid probably dangerous situations or trivial behaviors. The proposed HACO then effectively utilizes the data both from the trial-and-error exploration and human's partial demonstration to train a high-performing agent. HACO extracts proxy state-action values from partial human demonstration and optimizes the agent to improve the proxy values meanwhile reduce the human interventions. The experiments show that HACO achieves a substantially high sample efficiency in the safe driving benchmark. HACO can train agents to drive in unseen traffic scenarios with a handful of human intervention budget and achieve high safety and generalizability, outperforming both reinforcement learning and imitation learning baselines with a large margin. Code and demo video are included in the supplementary materials.
Large-Scale Representation Learning on Graphs via Bootstrapping
Authors: Corentin Tallec, Mohammad Gheshlaghi Azar, Mehdi Azabou, Eva L Dyer, Remi Munos, Petar Veličković, Michal Valko Shantanu Thakoor
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Self-supervised learning provides a promising path towards eliminating the need for costly label information in representation learning on graphs.  However, to achieve state-of-the-art performance, methods often need large numbers of negative examples and rely on complex augmentations.  This can be prohibitively expensive, especially for large graphs. To address these challenges, we introduce Bootstrapped Graph Latents (BGRL) - a graph representation learning method that learns by predicting alternative augmentations of the input. BGRL uses only simple augmentations and alleviates the need for contrasting with negative examples, and thus is scalable by design. BGRL outperforms or matches prior methods on several established benchmarks, while achieving a 2-10x reduction in memory costs. Furthermore, we show that BGRL can be scaled up to extremely large graphs with hundreds of millions of nodes in the semi-supervised regime, achieving state-of-the-art performance and improving over supervised baselines where representations are shaped only through label information.  In particular, our solution centered on BGRL constituted one of the winning entries to the Open Graph Benchmark -Large Scale Challenge at KDD Cup 2021, on a graph orders of magnitudes larger than all previously available benchmarks, thus demonstrating the scalability and effectiveness of our approach.
W-CTC: a Connectionist Temporal Classification Loss with Wild Cards
Authors: Jiahong Yuan, Yuchen Bian, Guangxu Xun, Jiaji Huang, Kenneth Church Xingyu Cai
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Connectionist Temporal Classification (CTC) loss is commonly used in sequence learning applications. For example, in Automatic Speech Recognition (ASR) task, the training data consists of pairs of audio (input sequence) and text (output label),without temporal alignment information. Standard CTC computes a loss by aggregating over all possible alignment paths, that map the entire sequence to the entire label (full alignment). However, in practice, there are often cases where the label is incomplete. Specifically, we solve the partial alignment problem where the label only matches a middle part of the sequence. This paper proposes the wild-card CTC (W-CTC) to address this issue, by padding wild-cards at both ends of the labels. Consequently, the proposed W-CTC improves the standard CTC via aggregating  over even more alignment paths. Evaluations on a number of tasks in speech and vision domains, show that the proposed W-CTC consistently outperforms the standard CTC by a large margin when label is incomplete. The effectiveness of the proposed method is further confirmed in an ablation study.
Towards a Unified View of Parameter-Efficient Transfer Learning
Authors: Chunting Zhou, Xuezhe Ma, Taylor Berg-Kirkpatrick, Graham Neubig Junxian He
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Fine-tuning large pretrained language models on downstream tasks has become the de-facto learning paradigm in NLP. However, conventional approaches fine-tune all the parameters of the pretrained model, which becomes prohibitive as the model size and the number of tasks grow. Recent work has proposed a variety of parameter-efficient transfer learning methods that only fine-tune a small number of (extra) parameters to attain strong performance. While effective, the critical ingredients for success and the connections among the various methods are poorly understood. In this paper, we break down the design of state-of-the-art parameter-efficient transfer learning methods and present a unified framework that establishes connections between them. Specifically, we re-frame them as modifications to specific hidden states in pretrained models, and define a set of design dimensions along which different methods vary, such as the function to compute the modification and the position to apply the modification. Through comprehensive empirical studies across machine translation, text summarization, language understanding, and text classification benchmarks, we utilize the unified view to identify important design choices in previous methods. Furthermore, our unified framework enables the transfer of design elements across different approaches, and as a result we are able to instantiate new parameter-efficient fine-tuning methods that tune less parameters than previous methods while being more effective, achieving comparable results to fine-tuning all parameters on all four tasks.
KL Guided Domain Adaptation
Authors: Toan Tran, Yarin Gal, Philip Torr, Atilim Gunes Baydin A. Tuan Nguyen
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Domain adaptation is an important problem and often needed for real-world applications. In this problem, instead of i.i.d. training and testing datapoints, we assume that the source (training) data and the target (testing) data have different distributions. With that setting, the empirical risk minimization training procedure often does not perform well, since it does not account for the change in the distribution. A common approach in the domain adaptation literature is to learn a representation of the input that has the same (marginal) distribution over the source and the target domain. However, these approaches often require additional networks and/or optimizing an adversarial (minimax) objective, which can be very expensive or unstable in practice. To improve upon these marginal alignment techniques, in this paper, we first derive a generalization bound for the target loss based on the training loss and the reverse Kullback-Leibler (KL) divergence between the source and the target representation distributions. Based on this bound, we derive an algorithm that minimizes the KL term to obtain a better generalization to the target domain. We show that with a probabilistic representation network, the KL term can be estimated efficiently via minibatch samples without any additional network or a minimax objective. This leads to a theoretically sound alignment method which is also very efficient and stable in practice. Experimental results also suggest that our method outperforms other representation-alignment approaches.
Pyraformer: Low-Complexity Pyramidal Attention for Long-Range Time Series Modeling and Forecasting
Authors: Hang Yu, Cong Liao, Jianguo Li, Weiyao Lin, Alex X. Liu, Schahram Dustdar Shizhan Liu
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Accurate prediction of the future given the past based on time series data is of paramount importance, since it opens the door for decision making and risk management ahead of time. In practice, the challenge is to build a flexible but parsimonious model that can capture a wide range of temporal dependencies. In this paper, we propose Pyraformer by exploring the multiresolution representation of the time series. Specifically, we introduce the pyramidal attention module (PAM) in which the inter-scale tree structure summarizes features at different resolutions and the intra-scale neighboring connections model the temporal dependencies of different ranges. Under mild conditions, the maximum length of the signal traversing path in Pyraformer is a constant (i.e., $\mathcal O(1)$) with regard to the sequence length $L$, while its time and space complexity scale linearly with $L$. Extensive numerical results show that Pyraformer typically achieves the highest prediction accuracy in both single-step and long-range forecasting tasks with the least amount of time and memory consumption, especially when the sequence is long.
Fast Model Editing at Scale
Authors: Charles Lin, Antoine Bosselut, Chelsea Finn, Christopher D Manning Eric Mitchell
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: While large pre-trained models have enabled impressive results on a variety of downstream tasks, the largest existing models still make errors, and even accurate predictions may become outdated over time. Because detecting all such failures at training time is impossible, enabling both developers and end users of such models to correct inaccurate outputs while leaving the model otherwise intact is desirable. However, the distributed, black-box nature of the representations learned by large neural networks makes producing such targeted edits difficult. If presented with only a single problematic input and new desired output, fine-tuning approaches tend to overfit; other editing algorithms are either computationally infeasible or simply ineffective when applied to very large models. To enable easy post-hoc editing at scale, we propose Model Editor Networks using Gradient Decomposition (MEND), a collection of small auxiliary editing networks that use a single desired input-output pair to make fast, local edits to a pre-trained model's behavior. MEND learns to transform the gradient obtained by standard fine-tuning, using a low-rank decomposition of the gradient to make the parameterization of this transformation tractable. MEND can be trained on a single GPU in less than a day even for 10 billion+ parameter models; once trained MEND enables rapid application of new edits to the pre-trained model. Our experiments with T5, GPT, BERT, and BART models show that MEND is the only approach to model editing that effectively edits the behavior of models with more than 10 billion parameters. Code available at https://sites.google.com/view/mend-editing.
NAS-Bench-Suite: NAS Evaluation is (Now) Surprisingly Easy
Authors: Colin White, Arber Zela, Arjun Krishnakumar, Guri Zabergja, Shakiba Moradian, Mahmoud Safari, Kaicheng Yu, Frank Hutter Yash Mehta
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: The release of tabular benchmarks, such as NAS-Bench-101 and NAS-Bench-201, has significantly lowered the computational overhead for conducting scientific research in neural architecture search (NAS). Although they have been widely adopted and used to tune real-world NAS algorithms, these benchmarks are limited to small search spaces and focus solely on image classification. Recently, several new NAS benchmarks have been introduced that cover significantly larger search spaces over a wide range of tasks, including object detection, speech recognition, and natural language processing. However, substantial differences among these NAS benchmarks have so far prevented their widespread adoption, limiting researchers to using just a few benchmarks. In this work, we present an in-depth analysis of popular NAS algorithms and performance prediction methods across 25 different combinations of search spaces and datasets, finding that many conclusions drawn from a few NAS benchmarks do \emph{not} generalize to other benchmarks. To help remedy this problem, we introduce \nasbs, a comprehensive and extensible collection of NAS benchmarks, accessible through a unified interface, created with the aim to facilitate reproducible, generalizable, and rapid NAS research. Our code is available at https://github.com/automl/naslib.
Zero-Shot Self-Supervised Learning for MRI Reconstruction
Authors: Seyed Amir Hossein Hosseini, Mehmet Akcakaya Burhaneddin Yaman
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Deep learning (DL) has emerged as a powerful tool for accelerated MRI reconstruction, but often necessitates a database of fully-sampled measurements for training. Recent self-supervised and unsupervised learning approaches enable training without fully-sampled data. However, a database of undersampled measurements may not be available in many scenarios, especially for scans involving contrast or translational acquisitions in development. Moreover, recent studies show that database-trained models may not generalize well when the unseen measurements differ in terms of sampling pattern, acceleration rate, SNR, image contrast, and anatomy. Such challenges necessitate a new methodology to enable subject-specific DL MRI reconstruction without external training datasets, since it is clinically imperative to provide high-quality reconstructions that can be used to identify lesions/disease for $\textit{every individual}$. In this work, we propose a zero-shot self-supervised learning approach to perform subject-specific accelerated DL MRI reconstruction to tackle these issues. The proposed approach partitions the available measurements from a single scan into three disjoint sets. Two of these sets are used to enforce data consistency and define loss during training for self-supervision, while the last set serves to self-validate, establishing an early stopping criterion. In the presence of models pre-trained on a database with different image characteristics, we show that the proposed approach can be combined with transfer learning for faster convergence time and reduced computational complexity.
Learning Scenario Representation for Solving Two-stage Stochastic Integer Programs
Authors: Wen Song, Zhiguang Cao, Jie Zhang Yaoxin Wu
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Many practical combinatorial optimization problems under uncertainty can be modeled as stochastic integer programs (SIPs), which are extremely challenging to solve due to the high complexity. To solve two-stage SIPs efficiently, we propose a conditional variational autoencoder (CVAE) based method to learn scenario representation for a class of SIP instances. Specifically, we design a graph convolutional network based encoder to embed each scenario with the deterministic part of its instance (i.e. context) into a low-dimensional latent space, from which a decoder reconstructs the scenario from its latent representation conditioned on the context. Such a design effectively captures the dependencies of the scenarios on their corresponding instances. We apply the trained encoder to two tasks in typical SIP solving, i.e. scenario reduction and objective prediction. Experiments on two SIP problems show that the learned latent representation significantly boosts the solving performance to attain high-quality solutions in short computational time, and generalizes fairly well to problems of larger sizes or with more scenarios.
Finite-Time Convergence and Sample Complexity of Multi-Agent Actor-Critic Reinforcement Learning with Average Reward
Authors: Jia Liu, Songtao Lu FNU Hairi
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: In this paper, we establish the first finite-time convergence result of the actor-critic algorithm for fully decentralized multi-agent reinforcement learning (MARL) problems with average reward. 
In this problem, a set of $N$ agents work cooperatively to maximize the global average reward through interacting with their neighbors over a communication network.
We consider a practical MARL setting, where the rewards and actions of each agent are only known to itself, and the knowledge of joint actions of the agents is not assumed. 
Toward this end, we propose a mini-batch Markovian sampled fully decentralized actor-critic algorithm and analyze its finite-time convergence and sample complexity.
We show that the sample complexity of this algorithm is $\mathcal{O}(N^{2}/\epsilon^{2}\log(N/\epsilon))$.
Interestingly, this sample complexity bound matches that of the state-of-the-art single-agent actor-critic algorithms for reinforcement learning.
Crystal Diffusion Variational Autoencoder for Periodic Material Generation
Authors: Xiang Fu, Octavian-Eugen Ganea, Regina Barzilay, Tommi S. Jaakkola Tian Xie
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Generating the periodic structure of stable materials is a long-standing challenge for the material design community. This task is difficult because stable materials only exist in a low-dimensional subspace of all possible periodic arrangements of atoms: 1) the coordinates must lie in the local energy minimum defined by quantum mechanics, and 2) global stability also requires the structure to follow the complex, yet specific bonding preferences between different atom types. Existing methods fail to incorporate these factors and often lack proper invariances. We propose a Crystal Diffusion Variational Autoencoder (CDVAE) that captures the physical inductive bias of material stability. By learning from the data distribution of stable materials, the decoder generates materials in a diffusion process that moves atomic coordinates towards a lower energy state and updates atom types to satisfy bonding preferences between neighbors. Our model also explicitly encodes interactions across periodic boundaries and respects permutation, translation, rotation, and periodic invariances. We significantly outperform past methods in three tasks: 1) reconstructing the input structure, 2) generating valid, diverse, and realistic materials, and 3) generating materials that optimize a specific property. We also provide several standard datasets and evaluation metrics for the broader machine learning community.
Online Hyperparameter Meta-Learning with Hypergradient Distillation
Authors: Hayeon Lee, JaeWoong Shin, Eunho Yang, Timothy Hospedales, Sung Ju Hwang Hae Beom Lee
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Many gradient-based meta-learning methods assume a set of parameters that do not participate in inner-optimization, which can be considered as hyperparameters. Although such hyperparameters can be optimized using the existing gradient-based hyperparameter optimization (HO) methods, they suffer from the following issues. Unrolled differentiation methods do not scale well to high-dimensional hyperparameters or horizon length, Implicit Function Theorem (IFT) based methods are restrictive for online optimization, and short horizon approximations suffer from short horizon bias. In this work, we propose a novel HO method that can overcome these limitations, by approximating the second-order term with knowledge distillation. Specifically, we parameterize a single Jacobian-vector product (JVP) for each HO step and minimize the distance from the true second-order term. Our method allows online optimization and also is scalable to the hyperparameter dimension and the horizon length. We demonstrate the effectiveness of our method on three different meta-learning methods and two benchmark datasets.
GeneDisco: A Benchmark for Experimental Design in Drug Discovery
Authors: Ashkan Soleymani, Andrew Jesson, Pascal Notin, Yarin Gal, Stefan Bauer, Patrick Schwab Arash Mehrjou
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: In vitro cellular experimentation with genetic interventions, using for example CRISPR technologies, is an essential step in early-stage drug discovery and target validation that serves to assess initial hypotheses about causal associations between biological mechanisms and disease pathologies. With billions of potential hypotheses to test, the experimental design space for in vitro genetic experiments is extremely vast, and the available experimental capacity - even at the largest research institutions in the world - pales in relation to the size of this biological hypothesis space. Machine learning methods, such as active and reinforcement learning, could aid in optimally exploring the vast biological space by integrating prior knowledge from various information sources as well as extrapolating to yet unexplored areas of the experimental design space based on available data. However, there exist no standardised benchmarks and data sets for this challenging task and little research has been conducted in this area to date. Here, we introduce GeneDisco, a benchmark suite for evaluating active learning algorithms for experimental design in drug discovery. GeneDisco contains a curated set of multiple publicly available experimental data sets as well as open-source implementations of state-of-the-art active learning policies for experimental design and exploration.
Representation-Agnostic Shape Fields
Authors: Jiancheng Yang, Yanjun Wang, Ziyu Chen, Linguo Li, Teng Li, Bingbing Ni, Wenjun Zhang Xiaoyang Huang
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: 3D shape analysis has been widely explored in the era of deep learning. Numerous models have been developed for various 3D data representation formats, e.g., MeshCNN for meshes, PointNet for point clouds and VoxNet for voxels. In this study, we present Representation-Agnostic Shape Fields (RASF), a generalizable and computation-efficient shape embedding module for 3D deep learning. RASF is implemented with a learnable 3D grid with multiple channels to store local geometry. Based on RASF, shape embeddings for various 3D shape representations (point clouds, meshes and voxels) are retrieved by coordinate indexing. While there are multiple ways to optimize the learnable parameters of RASF, we provide two effective schemes among all in this paper for RASF pre-training: shape reconstruction and normal estimation. Once trained, RASF becomes a plug-and-play performance booster with negligible cost. Extensive experiments on diverse 3D representation formats, networks and applications, validate the universal effectiveness of the proposed RASF. Code and pre-trained models are publicly available\footnote{\url{https://github.com/seanywang0408/RASF}}.
Fairness in Representation for Multilingual NLP: Insights from Controlled Experiments on Conditional Language Modeling
Authors: Ada Wan
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: We perform systematically and fairly controlled experiments with the 6-layer Transformer to investigate  the hardness in conditional-language-modeling languages which have been traditionally considered morphologically rich (AR and RU) and poor (ZH). We evaluate through statistical comparisons across 30 possible language directions from the 6 languages of the United Nations Parallel Corpus across 5 data sizes on 3 representation levels --- character, byte, and word. Results show that performance is relative to the representation granularity of each of the languages, not to the language as a whole. On the character and byte levels, we are able to eliminate statistically significant performance disparity, hence demonstrating that a language cannot be intrinsically hard. The disparity that mirrors the morphological complexity hierarchy is shown to be a byproduct of word segmentation. Evidence from data statistics, along with the fact that word segmentation is qualitatively indeterminate, renders a decades-long debate on morphological complexity (unless it is being intentionally modeled in a word-based, meaning-driven context) irrelevant in the context of computing. The intent of our work is to help effect more objectivity and adequacy in evaluation as well as fairness and inclusivity in experimental setup in the area of language and computing so to uphold diversity in Machine Learning and Artificial Intelligence research. Multilinguality is real and relevant in computing not due to canonical, structural linguistic concepts such as morphology or "words" in our minds, but rather standards related to internationalization and localization, such as character encoding --- something which has thus far been sorely overlooked in our discourse and curricula.
Invariant Causal Representation Learning for Out-of-Distribution Generalization
Authors: Yuhuai Wu, José Miguel Hernández-Lobato, Bernhard Schölkopf Chaochao Lu
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Due to spurious correlations, machine learning systems often fail to generalize to environments whose distributions differ from the ones used at training time. Prior work addressing this, either explicitly or implicitly, attempted to find a data representation that has an invariant relationship with the target. This is done by leveraging a diverse set of training environments to reduce the effect of spurious features and build an invariant predictor. However, these methods have generalization guarantees only when both data representation and classifiers come from a linear model class. We propose invariant Causal Representation Learning (iCaRL), an approach that enables out-of-distribution (OOD) generalization in the nonlinear setting (i.e., nonlinear representations and nonlinear classifiers). It builds upon a practical and general assumption: the prior over the data representation (i.e., a set of latent variables encoding the data) given the target and the environment belongs to general exponential family distributions, i.e., a more flexible conditionally non-factorized prior that can actually capture complicated dependences between the latent variables. Based on this, we show that it is possible to identify the data representation up to simple transformations. We also show that all direct causes of the target can be fully discovered, which further enables us to obtain generalization guarantees in the nonlinear setting. Experiments on both synthetic and real-world datasets demonstrate that our approach outperforms a variety of baseline methods.
Non-Parallel Text Style Transfer with Self-Parallel Supervision
Authors: Chongyang Gao, Chenyan Jia, Guangxuan Xu, Soroush Vosoughi Ruibo Liu
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: The performance of existing text style transfer models is severely limited by the non-parallel datasets on which the models are trained. In non-parallel datasets, no direct mapping exists between sentences of the source and target style; the style transfer models thus only receive weak supervision of the target sentences during training, which often leads the model to discard too much style-independent information, or utterly fail to transfer the style.

In this work, we propose LaMer, a novel text style transfer framework based on large-scale language models. LaMer first mines the roughly parallel expressions in the non-parallel datasets with scene graphs, and then employs MLE training, followed by imitation learning refinement, to leverage the intrinsic parallelism within the data. On two benchmark tasks (sentiment & formality transfer) and a newly proposed challenging task (political stance transfer), our model achieves qualitative advances in transfer accuracy, content preservation, and fluency. Further empirical and human evaluations demonstrate that our model not only makes training more efficient, but also generates more readable and diverse expressions than previous models.
PER-ETD: A Polynomially Efficient Emphatic Temporal Difference Learning Method
Authors: Tengyu Xu, Yingbin Liang Ziwei Guan
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Emphatic temporal difference (ETD) learning (Sutton et al., 2016) is a successful method to conduct the off-policy value function evaluation with function approximation. Although ETD has been shown to converge asymptotically to a desirable value function, it is well-known that ETD often encounters a large variance so that its sample complexity can increase exponentially fast with the number of iterations. In this work, we propose a new ETD method, called PER-ETD (i.e., PEriodically Restarted-ETD), which restarts and updates the follow-on trace only for a finite period for each iteration of the evaluation parameter. Further, PER-ETD features a design of the logarithmical increase of the restart period with the number of iterations, which guarantees the best trade-off between the variance and bias and keeps both vanishing sublinearly. We show that PER-ETD converges to the same desirable fixed point as ETD, but improves the exponential sample complexity of ETD to be polynomials. Our experiments validate the superior performance of PER-ETD and its advantage over ETD.
Top-N: Equivariant Set and Graph Generation without Exchangeability
Authors: Pascal Frossard Clement Vignac
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: This work addresses one-shot set and graph generation, and, more specifically, the parametrization of probabilistic decoders that map a vector-shaped prior to a distribution over sets or graphs. Sets and graphs are most commonly generated by first sampling points i.i.d. from a normal distribution, and then processing these points along with the prior vector using Transformer layers or Graph Neural Networks. 
This architecture is designed to generate exchangeable distributions, i.e., all permutations of the generated outputs are equally likely. We however show that it only optimizes a proxy to the evidence lower bound, which makes it hard to train. We then study equivariance in generative settings and show that non-exchangeable methods can still achieve permutation equivariance. Using this result, we introduce Top-n creation, a differentiable generation mechanism that uses the latent vector to select the most relevant points from a trainable reference set. Top-n can replace i.i.d. generation in any Variational Autoencoder or Generative Adversarial Network. Experimentally, our method outperforms i.i.d. generation by 15% at SetMNIST reconstruction, by 33% at object detection on CLEVR, generates sets that are 74% closer to the true distribution on a synthetic molecule-like dataset, and generates more valid molecules on QM9.
SHINE: SHaring the INverse Estimate from the forward pass for bi-level optimization and implicit models
Authors: Florian Mannel, Shaojie Bai, Jean-Luc Starck, Philippe Ciuciu, Thomas Moreau Zaccharie Ramzi
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: In recent years, implicit deep learning has emerged as a method to increase the depth of deep neural networks. While their training is memory-efficient, they are still significantly slower to train than their explicit counterparts. In Deep Equilibrium Models~(DEQs), the training is performed as a bi-level problem, and its computational complexity is partially driven by the iterative inversion of a huge Jacobian matrix. In this paper, we propose a novel strategy to tackle this computational bottleneck from which many bi-level problems suffer. The main idea is to use the quasi-Newton matrices from the forward pass to efficiently approximate the inverse Jacobian matrix in the direction needed for the gradient computation. We provide a theorem that motivates using our method with the original forward algorithms. In addition, by modifying these forward algorithms, we further provide theoretical guarantees that our method asymptotically estimates the true implicit gradient. We empirically study this approach in many settings, ranging from hyperparameter optimization to large Multiscale DEQs applied to CIFAR and ImageNet. We show that it reduces the computational cost of the backward pass by up to two orders of magnitude. All this is achieved while retaining the excellent performance of the original models in hyperparameter optimization and on CIFAR, and giving encouraging and competitive results on ImageNet.
Fast Differentiable Matrix Square Root
Authors: Nicu Sebe, Wei Wang Yue Song
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Computing the matrix square root or its inverse in a differentiable manner is important in a variety of computer vision tasks. Previous methods either adopt the Singular Value Decomposition (SVD) to explicitly factorize the matrix or use the Newton-Schulz iteration (NS iteration) to derive the approximate solution. However, both methods are not computationally efficient enough in either the forward pass or in the backward pass. In this paper, we propose two more efficient variants to compute the differentiable matrix square root. For the forward propagation, one method is to use Matrix Taylor Polynomial (MTP), and the other method is to use Matrix Pad\'e Approximants (MPA). The backward gradient is computed by iteratively solving the continuous-time Lyapunov equation using the matrix sign function. Both methods yield considerable speed-up compared with the SVD or the Newton-Schulz iteration. Experimental results on the de-correlated batch normalization and second-order vision transformer demonstrate that our methods can also achieve competitive and even slightly better performances. The code is available at \href{https://github.com/KingJamesSong/FastDifferentiableMatSqrt}{https://github.com/KingJamesSong/FastDifferentiableMatSqrt}.
NETWORK INSENSITIVITY TO PARAMETER NOISE VIA PARAMETER ATTACK DURING TRAINING
Authors: Fynn Firouz Faber, Dylan Richard Muir Julian Büchel
Published in: International Conference on Learning Representations 2022 (Main Conference Track), 2022

Abstract: Neuromorphic neural network processors, in the form of compute-in-memory crossbar arrays of memristors, or in the form of subthreshold analog and mixed-signal ASICs, promise enormous advantages in compute density and energy efficiency for NN-based ML tasks. However, these technologies are prone to computational non-idealities, due to process variation and intrinsic device physics. This degrades the task performance of networks deployed to the processor, by introducing parameter noise into the deployed model. While it is possible to calibrate each device, or train networks individually for each processor, these approaches are expensive and impractical for commercial deployment. Alternative methods are therefore needed to train networks that are inherently robust against parameter variation, as a consequence of network architecture and parameters. We present a new network training algorithm that attacks network parameters during training, and promotes robust performance during inference in the face of random parameter variation. Our approach introduces a loss regularization term that penalizes the susceptibility of a network to weight perturbation. We compare against previous approaches for producing parameter insensitivity such as dropout, weight smoothing and introducing parameter noise during training. We show that our approach produces models that are more robust to random mismatch-induced parameter variation as well as to targeted parameter variation. Our approach finds minima in flatter locations in the weight-loss landscape compared with other approaches, highlighting that the networks found by our technique are less sensitive to parameter perturbation. Our work provides an approach to deploy neural network architectures to inference devices that suffer from computational non-idealities, with minimal loss of performance. This method will enable deployment at scale to novel energy-efficient computational substrates, promoting cheaper and more prevalent edge inference.