Of course, the average cost to repair hurricane damage can vary significantly, based on level of damage, size of your home, and where you live. According to homeadvisor.com, homeowners recovering after a flood or heavy rains will pay a minimum of $4,000 to clean up water damage, not including mold removal. Wind damage from a hurricane, including damage to a roof, siding, windows, or porches, averages about $10,000. If you are replacing an entire roof, you could be looking at $8,000. If your house has more extensive damage from the hurricane, the price will go up substantially.