High Paying Ship Captain Jobs Boat Pilot. Salary range: $100,000-$230,000 per year. ... Tugboat Captain. Salary range: $69,000-$128,000 per year. ... Port Captain. Salary range: $89,000-$121,500 per year. ... Captain. Salary range: $36,000-$86,000 per year. ... Vessel Master. Salary range: $43,500-$84,000 per year. ... Marine Superintendent.