Master of Science is a more commonly offered degree by colleges around the world than a Master of Engineering. But it shouldn’t factor in your decision.
M.S. in Eng. is right for you if: You aspire for admission in a top Ph.D. program. M.S. will give you the research experience doctoral degrees demand. The course will not only make you a better engineer but also prepare you for further studies.
Masters of Engineering is right for you if: You want to learn the fundamentals of the field and get the technical knowledge for a job in the concerned industry.