Mini Aussies cost a bit more than Standards. You can expect to pay between $1,000 and $3,000 for a Miniature Australian Shepherd puppy from a reputable breeder. However, some pups can go for as much as $5,000. The price gap is so wide because of the vast range of coats and eye colors found in Mini Aussies. Merle- and red-coated Minis are generally the most expensive, as they are the rarest. Also, Merles often have blue eyes, or at least one blue eye, a highly sought-after feature.