Freezing Banana Pancakes is incredibly simple, if you remember a few helpful tips. HOW TO FREEZE BANANA PANCAKES: 1. Be sure to freeze your pancakes before you include any syrup or delicious toppings like berries or banana; 2. Prepare pancakes as directed by the recipe and allow them to cool completely. Layer each pancake between waxed paper in a freezer bag or container. Seal and freeze for up to 2 months.