This assembly has been haplotype reduced by standard methods, however due to the high heterozygosity as much as a third of the genome is represented by both haplotypes. We expect coverage to be near complete.-Valley Oak Genome 1.0 FASTA file download– Valley Oak Genome 1.0 GFF file download–UCSC Genome Browser for Quercus lobata–Using the USCS Genome Browser WikiAnnotation MethodsCurrently annotations are only available for genome versions 0.5 and  1.0  and are of draft quality only!  We used MAKER (Campbell et al. 2014) to identify gene models and predict functional annotations in version 1.0, and then transferred those annotations to version 0.5 using the default pipeline of FLO (https://github.com/wurmlab/flo), which is based on the UCSC-Kent. Toolkit {Kuhn, 2012}. The liftover was successful for 43,864 (71%) of the 61,773 gene models.