Yes. The bank makes these decisions.
Federal law does not establish the services for which fees may be imposed. Nor does federal law establish the maximum amount of fees that banks can charge for an IRA transfer. In some instances, fees are prescribed by state law.
Banks are required to disclose any fees when the deposit account is established. Review your account agreement for policies specific to your bank and your account.
If you feel that your bank imposes excessive IRA transfer fees, shop around and purchase your financial services accordingly.