Hooks - I organize my hooks closest to my tying station, naturally in order of what I use most. Dry fly, nymph, emerger, etc…
Hackle - For these I use air tight plastic boxes, again sorted into easy accessible hackle types of the most often used. Each box is clearly marked with cape type, again, so I don’t waist time searching. In every natural material box I also keep a couple of desiccant silica gel packs.
Synthetics material - Synthetics don’t require the more expensive air tight containers, less expensive plastic boxes will keep these in order. Make sure that you label your boxes clearly.
Threads and tinsels - For my most used threads and tinsels, I use plastic tubes. These are available in may different sizes and types.