Advantages of CUT&RUN and CUT&Tag compared to ChIP-seq are a better signal-to-noise ratio, higher sensitivity, a wider dynamic range, a lower requirement of sequencing reads and cell number. CUT&Tag has the advantage that the sequencing primers are being attached to the cleaved DNA fragments and requires fewer library preparation steps than CUT&RUN. No additional annealing is necessary. The method works particularly well for nucleosomal and tightly bound proteins. It has also been streamlined by the Henikoff lab into a protocol where the entire process takes place in one tube and high throughput variations amenable for automation are available. CUT&RUN on the other hand is preferable for transcription factors and other less tightly bound DNA binding proteins that are sensitive to the higher salt concentration in CUT&Tag necessary to prevent off-target tagmentation of accessible chromatin by Tn5. In addition, the spatial resolution of the MNase digestion is higher than that of the tagmentation, enabling a clearer footprint of the protein of interest.