"""Heart""" from typing import List from functools import partial import datasets import pandas VERSION = datasets.Version("1.0.0") _BASE_FEATURE_NAMES = [ "age", "is_male", "type_of_chest_pain", "resting_blood_pressure", "serum_cholesterol", "fasting_blood_sugar", "rest_electrocardiographic_type", "maximum_heart_rate", "has_exercise_induced_angina", "depression_induced_by_exercise", "slope_of_peak_exercise", "number_of_major_vessels_colored_by_flourosopy", "thal", "has_hearth_disease" ] DESCRIPTION = "Heart dataset from the UCI ML repository." _HOMEPAGE = "https://archive.ics.uci.edu/ml/datasets/Heart" _URLS = ("https://huggingface.co/datasets/mstz/heart/raw/heart.csv") _CITATION = """ @misc{misc_heart_disease_45, author = {Janosi,Andras, Steinbrunn,William, Pfisterer,Matthias, Detrano,Robert & M.D.,M.D.}, title = {{Heart Disease}}, year = {1988}, howpublished = {UCI Machine Learning Repository}, note = {{DOI}: \\url{10.24432/C52P4X}} }""" # Dataset info urls_per_split = { "hungary": {"train": "https://huggingface.co/datasets/mstz/heart/raw/main/processed.hungarian.data"}, } features_types_per_config = { "hungary": { "age": datasets.Value("int8"), "is_male": datasets.Value("bool"), "type_of_chest_pain": datasets.Value("string"), "resting_blood_pressure": datasets.Value("float32"), "serum_cholesterol": datasets.Value("float32"), "fasting_blood_sugar": datasets.Value("float32"), "rest_electrocardiographic_type": datasets.Value("string"), "maximum_heart_rate": datasets.Value("float32"), "has_exercise_induced_angina": datasets.Value("bool"), "depression_induced_by_exercise": datasets.Value("float32"), "has_hearth_disease": datasets.ClassLabel(num_classes=2, names=("no", "yes")) }, } features_per_config = {k: datasets.Features(features_types_per_config[k]) for k in features_types_per_config} _ENCODING_DICS = { "type_of_chest_pain": { 1: "typical angina", 2: "atypical angina", 3: "non-anginal pain", 4: "asymptomatic" } } class HeartConfig(datasets.BuilderConfig): def __init__(self, **kwargs): super(HeartConfig, self).__init__(version=VERSION, **kwargs) self.features = features_per_config[kwargs["name"]] class Heart(datasets.GeneratorBasedBuilder): # dataset versions DEFAULT_CONFIG = "hungary" BUILDER_CONFIGS = [ HeartConfig(name="hungary", description="Heart for binary classification, hungary dataset.") ] def _info(self): info = datasets.DatasetInfo(description=DESCRIPTION, citation=_CITATION, homepage=_HOMEPAGE, features=features_per_config[self.config.name]) return info def _split_generators(self, dl_manager: datasets.DownloadManager) -> List[datasets.SplitGenerator]: downloads = dl_manager.download_and_extract(urls_per_split) return [ datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloads[self.config.name]["train"]}) ] def _generate_examples(self, filepath: str): data = pandas.read_csv(filepath, header=None) data.columns = _BASE_FEATURE_NAMES data = self.preprocess(data, self.config.name) for row_id, row in data.iterrows(): data_row = dict(row) yield row_id, data_row def preprocess(self, data, config): for feature in _ENCODING_DICS: encoding_function = partial(self.encode, feature) data.loc[:, feature] = data[feature].apply(encoding_function) data[["age"]].applymap(int) data.drop("slope_of_peak_exercise", axis="columns", inplace=True) data.drop("number_of_major_vessels_colored_by_flourosopy", axis="columns", inplace=True) data.drop("thal", axis="columns", inplace=True) data = data[data.serum_cholesterol != "?"] data = data.infer_objects() data = data[data.resting_blood_pressure != "?"] data = data[data.fasting_blood_sugar != "?"] data = data[data.rest_electrocardiographic_type != "?"] data = data[data.maximum_heart_rate != "?"] data = data[data.has_exercise_induced_angina != "?"] data = data.astype({"is_male": bool, "has_exercise_induced_angina": bool, "serum_cholesterol": float, "maximum_heart_rate": float, "resting_blood_pressure": float, "fasting_blood_sugar": float}) return data def encode(self, feature, value): if feature in _ENCODING_DICS: return _ENCODING_DICS[feature][value] raise ValueError(f"Unknown feature: {feature}")