# A Role for Folate in Microbiome-Linked Control of Autoimmunity

Authors: Christine Mölzer; Heather M. Wilson; Lucia Kuffova; John V. Forrester
Journal: Journal of Immunology Research
 (2021)

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## Abstract

The microbiome exerts considerable control over immune homeostasis and influences susceptibility to autoimmune and autoinflammatory disease (AD/AID) such as inflammatory bowel disease (IBD), multiple sclerosis (MS), type 1 diabetes (T1D), psoriasis, and uveitis. In part, this is due to direct effects of the microbiome on gastrointestinal (GI) physiology and nutrient transport, but also to indirect effects on immunoregulatory controls, including induction and stabilization of T regulatory cells (Treg). Secreted bacterial metabolites such as short-chain fatty acids (SCFA) are under intense investigation as mediators of these effects. In contrast, folate (vitamin B9), an essential micronutrient, has attracted less attention, possibly because it exerts global physiological effects which are difficult to differentiate from specific effects on the immune system. Here, we review the role of folate in AD/AID with some emphasis on sight-threatening autoimmune uveitis. Since folate is required for the generation and maintenance of Treg, we propose that one mechanism for microbiome-based control of AD/AID is via folate-dependent induction of GI tract Treg, particularly colonic Treg, via anergic T cells (Tan). Hence, folate supplementation has potential prophylactic and/or therapeutic benefit in AID/AD.


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## Body

## 1. Introduction

Autoimmune diseases (AD) develop when there is breakdown of immunological tolerance to self-antigen in the adaptive immune system while autoinflammatory diseases (AID) occur when there are defects or dysregulation in the innate immune system [1]. In both cases, a disordered microbiome has been implicated and, by inference, an altered bacterial flora including its secreted products [2]. Classical AD such as multiple sclerosis (MS) [3], type 1 diabetes (T1D) [4], and rheumatoid arthritis (RA) [5] is kept at bay by a healthy microbiome, while probable AID such as inflammatory bowel disease (IBD), Behçet’s uveitis, and ankylosing spondylitis (AS) are negatively affected by a disordered microbiome (reviewed in [6]). Psoriasis, a debilitating skin inflammation, and uveitis, a major sight-threatening disease in which infection may be a direct or indirect cause, are considered in many cases to be either an AD or an AID [7, 8].In both AD and AID, there is failure of immune regulation (tolerance) and a disturbed microbiome. Identifying possible causal links between these two biological domains is a major focus. In adaptive immunity, tolerance (homeostasis) is maintained by autoreactive T cell deletion/anergy or suppression by T regulatory cells (Treg). Treg are also effective in controlling innate immunity by regulating the activity of myeloid and NK cells [9] and so contribute to preventing AID. Circumstantial evidence for their role in AD and AID is the decline in Treg numbers in many of these conditions such as AS [10] as well as the effectiveness of adoptive Treg therapy in experimental models of AD and AID.


## 2. The Colonic Microbiota Shapes the Host’s Health

The prenatal GI tract is sterile due to the protective immunological placental barrier preventing bacterial translocation into the fetal organism. Microbial colonialization develops gradually when environmental contact first occurs upon delivery. This has significant implications for overall health in later life [11, 12]. For instance, the expanding gut microbiome exerts its effects on brain- (CNS-) related immune privilege (IP) in that the blood-CNS barriers only reach maturity in the neonatal period [13–15]. A key colonic metabolite that can modulate the immune system is folate. Naturally, occurring folate/vitamin B9 (pteroyl-glutamic acids and oligo-glutamic acid conjugates) and its synthetic form folic acid (FA) are water-soluble B vitamins that must be ingested through the diet (e.g., legumes and leafy greens [16, 17]) or supplements [18]. Commensal bacteria [19] are also capable of synthesizing folate and other B vitamins. Glutamic compounds [20] occur in the body as different metabolites with variable bioavailability [21] and the terms folate and FA are often used interchangeably. The role of folate in hematopoiesis, reproductive health and foetal development are well known, and an extended role for the vitamin particularly in later life is recognized in preventing a decline in cognitive and neurological functioning [16, 22, 23]. Indeed, most likely due to inadequate intake, folate deficiency is more prevalent in the older population [24] contemporaneously with a higher incidence of chronic disease.Hence, a balanced microbiome with adequate folate and micronutrient production maintains homeostasis. Recently, however, the microbiome has come under scrutiny as a source of pathogenic antigens capable of inducing or promoting AD [25–28]. This is particularly linked to dysbiosis [29] and may be the result of infection with pathogenic bacteria, loss of commensal bacteria, or reduction in microbial diversity [30]. The human intestinal epithelium covers as much as 400 m2 of surface area [31] with more than ten times as many resident microbes as the total number of cells in the body [32]. Overall, the gut microbiota comprises five phyla and about 160 species in the large intestine [33], and the number of genes of the intestinal microbiota is 150 times greater than the human genome [34]. Qualitative and quantitative changes in the microbial flora, their metabolic activity, and their local distribution [35] are a typical feature of IBD [36] that is otherwise characterized by the infiltration of the lamina propria with a mixed leukocyte population expressing proinflammatory cytokines [37]. Whether dysbiosis represents the cause or result of IBD (reviewed in [38]), it is a correlated biomarker of extraintestinal inflammatory disease (reviewed in [25, 39]). While mechanistic evidence is still limited, dysbiosis has long been linked to AD [40], including noninfectious uveitis [41–43], (reviewed in [25]), often occurring simultaneously with acute flare-ups of colitis [44]. Thus, it can be seen that dysbiosis and similar microbiota-related environmental factors impact up to 70% of all AD [45, 46], and while the etiology of IBD itself is not fully understood, it is considered to be the result of an interplay between environment/nutrition, microbiota, gastrointestinal immunity, and epigenetics.


## 3. The Microbiome Promotes Immunological Tolerance via an Immune Privilege-Like Mechanism

Immune privilege is a relative property of all tissues reflecting various degrees of tissue-based immunological tolerance [47] and has particular relevance for the large intestine, now considered a secondary immune organ [48, 49]. “Unconventional” IP of the gut [50] tolerates trillions of commensals and has two components, a physicochemical barrier and an immunological barrier [51]. The physical barrier is provided by the two cellular barriers which prevent translocation of pathobionts from the intestine to the general circulation (reviewed in [47]). These include a monolayer of enterocyte epithelium (i.e., an intestinal epithelial barrier, IEB) covering the entire mucosa and the subjacent lamina propria and a stringent gut-vascular barrier (GVB). The physical barrier to the passage of small molecules is provided by immunologically responsive [50] intraepithelial tight junctions [52] while a chemical barrier derives from specialized enterocytes (mucus-producing goblet cells and Paneth cells) which secrete antimicrobial peptides (reviewed in [53, 54]). A further physical barrier to hematogenous passage of any pathogens which may have penetrated the epithelium is provided by the GVB [55] with its closely associated pericytes and enteric glial cells which serve a vital function in retaining barrier properties [56–60].The immunological component of the gut barrier is provided by a wealth of immune cells in the gut, including tolerogenic DC, several types of classical T cells includingTreg, three sets of innate lymphoid cells (ILC), myeloid suppressor cells, and mucosa-associated invariant T (MAIT) cells. These cells regulate aspects of both the adaptive and innate immune systems and are under the control of secreted factors both by host cells and the microbiome. For instance, flagellin associated mostly with gram-negative bacteria (e.g., E.coli and Salmonella) binds TLR5 on CD103+ mucosal DC which secrete IL23 to act on ILC which in turn release IL22 to then induce the gut epithelium to release antimicrobial peptides [30], and colonic Clostridia through their metabolic activity have been found to induce and impact the colonic distribution of Treg in mice [61–63]. Treg are known to be stabilized by folate [64–66], that in turn is synthesized by some commensals including Clostridia, Lactobacilli, and Bifidobacteria [67]. These findings point to a tolerizing immunological role for the commensal microbiome that has the potential to exert effects on disease induction and progression. How gut-derived leukocytes might cross distant barriers at target sites and induce AD/AID remains to be clarified. Several mechanisms have been proposed [25] viewed from both the perspective of an adaptive immune response (TCR activation) and dysregulation of the microbiome.


## 4. The Microbiome Mediates Immunological Tolerance via the Products of Microbial Fermentation

Microbial fermentation in the gut generates secreted products which directly modify immune activity (Figure1). These include products of tryptophan metabolism, short-chain fatty acids (SCFA), and folate.Figure 1
Bioavailable folate (B9) produced by certain phyla of the human microbiome (Proteobacteria, Firmicutes, Actinobacteria, and Verrucomicrobia [84]; green microbes) and short-chain fatty acids (SCFA) locally stabilize T regulatory cells (Treg) in the colon, thereby increasing their abundance (a). T cells traffic from the colon to distant sites [85, 86] where they accumulate and exert their respective functional properties. The inflamed colon ((b); characterized by structural damage—“leaky gut”) is frequently accompanied by dysbiosis (red microbes). This qualitative and quantitative shift in bacterial colonization is associated with decreased microbial folate and SCFA production and a consequential relative increase in autoreactive immunogenic T effector cells (Teff) [87]. Teff have been shown to traffic from the colon to target sites of autoimmunity [85, 86] (e.g., intraocular tissue in the case of autoimmune uveitis), skewing the ratio of immunogenic (Teff) to regulatory cells (Treg) at target sites [88–90], ultimately breaching ocular immune privilege (IP) through unknown mechanisms, and thereby triggering autoimmune disease. Due to impaired intestinal barrier integrity in dysbiosis, pathogenic bacterial/viral/fungal/environmental antigens have facilitated access to the circulation, possibly triggering inflammation through adjuvant effects at affected sites (following antigen presentation; APC) (b). In the case of uveitis, we propose that when a sufficiently high Teff precursor frequency is generated [91], activated T cells access retinal tissue where they adopt a pathogenic phenotype upon further activation by retinal self-antigen and/or microbial antigen [92].


### 4.1. Tryptophan

Tryptophan is an essential amino acid (AA) that is delivered through the diet, particularly dairy products and fish. Host metabolic pathways of tryptophan include the serotonin and kynurenine routes, the latter of which via indoleamine 2,3 dioxygenase (IDO) is a major tolerizing pathway in DC and macrophages. Its downstream products such as kynurenic acid (KA), 3-hydroxy-anthranilic acid (HAA), quinolinic acid (QA), and niacin (vitamin B3) suppress both innate and adaptive immunity and promote immunological tolerance and gut homeostasis (reviewed by [68]). Tryptophan can also be metabolized by microbiota-generating metabolites that interact with the aryl hydrocarbon receptor [69]. The IDO pathway and the AhR system are active in many cell types and important in homeostasis, e.g., in epithelial health. In immune cells, it mediates tolerance and suppresses inflammation via DC-mediated induction of Treg.


### 4.2. Retinoic Acid

Induction ofTreg in the gut may also require supplementation of dietary vitamin A (retinol) which is directly converted to bioavailable all trans-retinoic acid (atRA) by gut-associated lymphoid tissue DC [70] and in both mice and humans promotes conversion of naïve T cells into tissue-specific (mucosa homing) FoxP3+Treg through FoxP3 promoter histone acetylation [71]. Moreover, atRA prevents the IL6-induced conversion of Treg into Th17 cells and boosts the generation of TGFβ-induced Treg in vitro that were effective in suppressing inflammation in a colitis model [72]. Similarly, atRA stabilized Treg in an experimental autoimmune encephalitis model (EAE) through a TGFβ-dependent pathway [73], and in an experimental autoimmune uveitis (EAU) model, atRA acted as an adjuvant to induce antigen-specific type 1 Treg (Tr1) attenuating autoimmunity [74].


### 4.3. SCFA

SCFA produced by the microbiome are major effectors of immunomodulation. Three main SCFA are recognized: acetate, butyrate, and propionate. Acetate accounts for ~50-70%, propionate ~20%, and butyrate, which is selectively restricted to certainClostridia species, makes up the remainder [75]. SCFA regulates intestinal Treg and macrophages, and the majority of SCFA produced remain in the gut generating beneficial effects locally, while only negligible quantities escape into the general circulation [76]. Dysbiosis in IBD (colitis) patients is typically associated with a reduced number of bacteria that produce SCFA particularly butyrate and propionate (Figure 1(b)). These include Firmicutes such as cluster IV Clostridia next to Bifidobacteria. Propionate and butyrate suppress inflammation by promoting the generation of tolDC and Treg (reviewed in [77]). In germ-free mice treated with antibiotics, stool butyrate concentrations were decreased relative to littermate mice [78]. Oral acetate supplementation in NOD mice reduced autoreactive T cells in lymphoid tissues in a B cell-mediated fashion. A butyrate-rich diet increased Treg, while a combination of both SCFA improved gut barrier function and decreased diabetogenic IL21 in serum of NOD mice [79]. Colonic concentrations of SCFA, including butyrate, correlated with the number of FoxP3+Treg in the caecum of mice [62]. Furthermore, oral administration of butyrate to mice increased the FoxP3 expression in Treg, higher numbers of Treg in mucosal tissues, and an enhanced ability of DC to induce Treg differentiation. These data suggest that butyrate (and to a lesser extent propionate) promotes extrathymic differentiation of Treg [78]. Recent findings from human trials investigating AD (MS and neuromyelitis optica) support this hypothesis [80, 81].Vitamin B3 (niacin) also exerts immune-modulatory functions by increasingTreg cell numbers and functioning [82, 83] together with butyrate through activation of its receptor Gpr109a, thereby protecting against colon inflammation [83].Mechanistically, SCFA act by inhibiting histone deacetylases (HDAC) [78], in antigen-presenting cells affecting atRA and IL10 production [93]. HDAC also induce apoptosis in Teff cells [94] and engage in loosening of chromatin, thus enabling transcription factor accessibility to the DNA backbone. These findings suggest a balancing effect of SCFA on mucosal and systemic immunity, possibly affecting inflammation in secondary organs, since mucosal inflammation is typically associated with epithelial damage (“leaky gut”). Fukuda et al. [95] demonstrated that acetate (produced by Bifidobacteria and Clostridia) may improve leaky gut by restoring gut epithelial integrity through activation of the inflammasome and IL18 [96].


### 4.4. Folate

Folate is synthesized de novo from phosphoenolpyruvate and guanosine triphosphate (GTP) and secreted by commensals of the phylumBacteroidetes (Prevotella, Bacteroides, Porphyromonas [97]) (reviewed in [98]) (Figure 2). In contrast to dietary vitamins that are mostly absorbed in the small intestine, microbial folate metabolites are mainly absorbed in the colon where they are produced [99, 100] and assimilated into host tissues [100–102]. Various glutamylation profiles for commensal gut microbes (i.e., species-specific patterns of folate derivatives) may affect folate bioavailability in the intestine [84] and the general circulation [67], and the colon is recognized as a significant folate depot [19]. Folic acid deficiency is associated with disruptions of intestinal integrity and persistent diarrhea (reviewed in [103]). A folate-producing microbiome likely influences the T cell methylome, but the mechanism is unclear [94]. Rats fed a probiotic formulation of folate-producing Bifidobacteria exhibited increased plasma folate levels, confirming in vivo production and absorption of the vitamin. The same supplement when administered to humans raised folate concentration in feces (reviewed in [67]). A sufficient folate status therefore is likely to reduce the risk of AD/AID including uveitis.Figure 2
Bacterial route of de novo folic acid synthesis. Certain commensals of the human colonic flora produce folate de novo through the chorismate pathway (from phosphoenolpyruvate + guanosine triphosphate, GTP)1. Further, 77% of the bacterial genome is capable of synthesizing folate using freely available p-aminobenzoic acid (pABA) and dihydropteroate diphosphate (pteridine)2 [84]. The pathway engages a series of enzymatic reactions (red protein symbols) including dihydropteroate synthetase and dihydrofolate synthetase. The resulting dihydrofolate (via the dihydropteroate intermediate) must be enzymatically reduced (through dihydrofolate reductase) to generate biologically active tetrahydrofolate. This process can be blocked by the folate antagonist methotrexate (Mtx), used for controlling some forms of autoimmune disease including anterior uveitis. Folate metabolites synthesized by commensals are used by the bacteria themselves (e.g., for DNA-synthesis or anabolic pathways such as generation of amino acids, AA). The remaining unused folates are released into the gut lumen and absorbed in a receptor-mediated fashion absorption into the circulation.


## 4.1. Tryptophan

Tryptophan is an essential amino acid (AA) that is delivered through the diet, particularly dairy products and fish. Host metabolic pathways of tryptophan include the serotonin and kynurenine routes, the latter of which via indoleamine 2,3 dioxygenase (IDO) is a major tolerizing pathway in DC and macrophages. Its downstream products such as kynurenic acid (KA), 3-hydroxy-anthranilic acid (HAA), quinolinic acid (QA), and niacin (vitamin B3) suppress both innate and adaptive immunity and promote immunological tolerance and gut homeostasis (reviewed by [68]). Tryptophan can also be metabolized by microbiota-generating metabolites that interact with the aryl hydrocarbon receptor [69]. The IDO pathway and the AhR system are active in many cell types and important in homeostasis, e.g., in epithelial health. In immune cells, it mediates tolerance and suppresses inflammation via DC-mediated induction of Treg.


## 4.2. Retinoic Acid

Induction ofTreg in the gut may also require supplementation of dietary vitamin A (retinol) which is directly converted to bioavailable all trans-retinoic acid (atRA) by gut-associated lymphoid tissue DC [70] and in both mice and humans promotes conversion of naïve T cells into tissue-specific (mucosa homing) FoxP3+Treg through FoxP3 promoter histone acetylation [71]. Moreover, atRA prevents the IL6-induced conversion of Treg into Th17 cells and boosts the generation of TGFβ-induced Treg in vitro that were effective in suppressing inflammation in a colitis model [72]. Similarly, atRA stabilized Treg in an experimental autoimmune encephalitis model (EAE) through a TGFβ-dependent pathway [73], and in an experimental autoimmune uveitis (EAU) model, atRA acted as an adjuvant to induce antigen-specific type 1 Treg (Tr1) attenuating autoimmunity [74].


## 4.3. SCFA

SCFA produced by the microbiome are major effectors of immunomodulation. Three main SCFA are recognized: acetate, butyrate, and propionate. Acetate accounts for ~50-70%, propionate ~20%, and butyrate, which is selectively restricted to certainClostridia species, makes up the remainder [75]. SCFA regulates intestinal Treg and macrophages, and the majority of SCFA produced remain in the gut generating beneficial effects locally, while only negligible quantities escape into the general circulation [76]. Dysbiosis in IBD (colitis) patients is typically associated with a reduced number of bacteria that produce SCFA particularly butyrate and propionate (Figure 1(b)). These include Firmicutes such as cluster IV Clostridia next to Bifidobacteria. Propionate and butyrate suppress inflammation by promoting the generation of tolDC and Treg (reviewed in [77]). In germ-free mice treated with antibiotics, stool butyrate concentrations were decreased relative to littermate mice [78]. Oral acetate supplementation in NOD mice reduced autoreactive T cells in lymphoid tissues in a B cell-mediated fashion. A butyrate-rich diet increased Treg, while a combination of both SCFA improved gut barrier function and decreased diabetogenic IL21 in serum of NOD mice [79]. Colonic concentrations of SCFA, including butyrate, correlated with the number of FoxP3+Treg in the caecum of mice [62]. Furthermore, oral administration of butyrate to mice increased the FoxP3 expression in Treg, higher numbers of Treg in mucosal tissues, and an enhanced ability of DC to induce Treg differentiation. These data suggest that butyrate (and to a lesser extent propionate) promotes extrathymic differentiation of Treg [78]. Recent findings from human trials investigating AD (MS and neuromyelitis optica) support this hypothesis [80, 81].Vitamin B3 (niacin) also exerts immune-modulatory functions by increasingTreg cell numbers and functioning [82, 83] together with butyrate through activation of its receptor Gpr109a, thereby protecting against colon inflammation [83].Mechanistically, SCFA act by inhibiting histone deacetylases (HDAC) [78], in antigen-presenting cells affecting atRA and IL10 production [93]. HDAC also induce apoptosis in Teff cells [94] and engage in loosening of chromatin, thus enabling transcription factor accessibility to the DNA backbone. These findings suggest a balancing effect of SCFA on mucosal and systemic immunity, possibly affecting inflammation in secondary organs, since mucosal inflammation is typically associated with epithelial damage (“leaky gut”). Fukuda et al. [95] demonstrated that acetate (produced by Bifidobacteria and Clostridia) may improve leaky gut by restoring gut epithelial integrity through activation of the inflammasome and IL18 [96].


## 4.4. Folate

Folate is synthesized de novo from phosphoenolpyruvate and guanosine triphosphate (GTP) and secreted by commensals of the phylumBacteroidetes (Prevotella, Bacteroides, Porphyromonas [97]) (reviewed in [98]) (Figure 2). In contrast to dietary vitamins that are mostly absorbed in the small intestine, microbial folate metabolites are mainly absorbed in the colon where they are produced [99, 100] and assimilated into host tissues [100–102]. Various glutamylation profiles for commensal gut microbes (i.e., species-specific patterns of folate derivatives) may affect folate bioavailability in the intestine [84] and the general circulation [67], and the colon is recognized as a significant folate depot [19]. Folic acid deficiency is associated with disruptions of intestinal integrity and persistent diarrhea (reviewed in [103]). A folate-producing microbiome likely influences the T cell methylome, but the mechanism is unclear [94]. Rats fed a probiotic formulation of folate-producing Bifidobacteria exhibited increased plasma folate levels, confirming in vivo production and absorption of the vitamin. The same supplement when administered to humans raised folate concentration in feces (reviewed in [67]). A sufficient folate status therefore is likely to reduce the risk of AD/AID including uveitis.Figure 2
Bacterial route of de novo folic acid synthesis. Certain commensals of the human colonic flora produce folate de novo through the chorismate pathway (from phosphoenolpyruvate + guanosine triphosphate, GTP)1. Further, 77% of the bacterial genome is capable of synthesizing folate using freely available p-aminobenzoic acid (pABA) and dihydropteroate diphosphate (pteridine)2 [84]. The pathway engages a series of enzymatic reactions (red protein symbols) including dihydropteroate synthetase and dihydrofolate synthetase. The resulting dihydrofolate (via the dihydropteroate intermediate) must be enzymatically reduced (through dihydrofolate reductase) to generate biologically active tetrahydrofolate. This process can be blocked by the folate antagonist methotrexate (Mtx), used for controlling some forms of autoimmune disease including anterior uveitis. Folate metabolites synthesized by commensals are used by the bacteria themselves (e.g., for DNA-synthesis or anabolic pathways such as generation of amino acids, AA). The remaining unused folates are released into the gut lumen and absorbed in a receptor-mediated fashion absorption into the circulation.


## 5. Microbiome-Mediated Immune Tolerance Is Maintained through Regulatory and Anergic T Cells under the Influence of Folate

Deletion, anergy, and induction ofTreg are the tenets of immune tolerance. Treg are generated centrally in the thymus de novo (natural Treg, nTreg) and in the periphery (pTreg) from conventional T cells (Tconv). Most autoreactive Tconv are deleted in the thymus or periphery but a proportion may enter a state of anergy (Tan) as they become tolerized [104–107]. pTreg in the gut are recognized as major contributors to immune homeostasis and generated in response to tryptophan metabolites or SCFA secreted by the microbiome.Less is known about the role of microbiome-generated folate in colonicTreg formation. However, an important property of pTreg is the high expression of the folate receptor, FR4 [65]. In addition, a developmental relationship between Treg and Tan has been suggested [105, 106, 108, 109]. Both cell types have some overlapping features such as expression of the folate receptor FR4 [108]. Moreover, on adoptive transfer, anergic FoxP3- CD44hi CD73hi FR4hi Nrp1+ cells gave rise to FoxP3+Treg in an autoimmune arthritis model and reduced the susceptibility of mice to IBD [110], through acting as progenitors for Treg cell differentiation. Both Treg and Tan rely on similar tightly regulated epigenetic programs to retain function [105, 109, 110]. nTreg contain highly methylated CpG-rich regions in the conserved noncoding sequence 2 (CNS2) of the FoxP3 locus ([111, 112]; reviewed in [113]) since pTreg are induced in the periphery, this level of methylation is lost allowing stable FoxP3 expression (summarized in [114]). Thus, systemic folate may be more important in the generation of nTreg rather than stable pTreg as exist in the colon. However, the increased number of total methylation sites in Tan in the periphery [115] probably allows a necessary degree of instability to permit interconversion of Tan and pTreg. This points towards a potential indirect Treg replenishing effect of folate through epigenetic modifications in Tan. Microbiome-derived folate might thus generate a pool of Tan from Tconv, which have the option of losing their methylation sites and becoming stable Treg. This degree of flexibility underpins the properties of immunological tolerance.The mechanism whereby folate modifiesTreg appears to be through inhibiting cell death specifically by induction of Bcl-2. Adoptive transfer of Treg-depleted cell suspensions induced autoimmune gastritis in susceptible nude mice [65] while adoptive transfer of folate-supplemented Treg prolonged the cells’ survival and protected the mice from the disease. Mice treated with the folate antagonist methotrexate (Mtx) show impaired survival of Treg and decreased expression of Bcl-2, while in vivo depletion of dietary folate resulted in a reduction in Treg cell numbers in the small intestine. In this study, folate was required for the survival of differentiated nTreg, but not for the conversion of naïve T cells into pTreg [66]. Remarkably, this effect is different from that of atRA, and less so vitamin D3, which both enhance the differentiation of naïve T cells into pTreg [72, 116–119], emphasizing a unique role for folate in the generation of nTreg [113]. This selective effect of folate on maintenance of FoxP3+Treg has been further demonstrated [64], while a diet deficient in folate resulted in a marked reduction of FoxP3+Treg, but not other T cell populations, in the colon. In the same study, blockade of FR4 and treatment with Mtx, led to decreased colonic FoxP3+Treg and increased autoimmune bowel inflammation. These data have implications for human biology but remain to be verified in man, particularly as Treg exhibit some degree of phenotypical variation between mice and humans [120, 121].


## 6. FoxP3 in T Regulatory Cells Controls the Expression of the Folate Receptor

At a molecular level, folate stabilizes overall cell proliferation, controls DNA modification (histone methylation), and metabolically detoxifies the prooxidative AA intermediate homocysteine, by recycling it to the essential sulphur-rich AA methionine (Figure3) or alternatively, the semiessential AA cysteine (not depicted in Figure 3).Figure 3
Pathways of folate metabolism and the interrelationships of folate-dependent reactions. Dihydrofolate (DHF) from nutritional sources and the gut microflora is enzymatically reduced engaging dihydrofolate reductase (DHFR) to biologically active tetrahydrofolate (THF), a process that is competitively blocked by the folate analogue methotrexate (Mtx). This has implications for cell proliferation, division, and survival. Folate metabolism branches out into anabolic pathways including synthesis of amino acids (AA) and amines (=NH) as well as purines and thymidylate for DNA production. Importantly, folate in the form of 5-methyl tetrahydrofolate (5-metTHF) serves as a methyl-group (CH3) donor in the detoxification of proatherogenic homocysteine to the AA methionine. SAM is the universal CH3 donor in histone- and DNA-methylation. This function gives folate powerful mediating properties at an epigenetic level with a potential role in thymic CD4+ nTreg expansion. Abbreviations: MTR: methionine synthase requiring the co-factor vitamin B12 (cobalamin) as a methyl transfer vehicle (methyl cobalamin, CH3-B12); MTHFR: 5,10-methylenetetrahydrofolate reductase (requiring the co-factor NADPH, not shown); THF: tetrahydrofolate. Methionine cycle metabolites: SAH: S-adenosylhomocysteine; SAM: S-adenosylmethionine; =NH: amines.Folate is delivered to cells through three known routes: (1) via folate receptors (FR)/folate-binding protein (Folbps) [122], (2) the reduced folate carrier, and (3) through the proton-coupled folate transporter [123]. In humans, there are four FR isoforms, namely, α, β, γ, and δ, with tissue-specific expression patterns [122, 124]. Initially, three FR isoforms with greater than 70% homology were identified in humans (i.e., α, β, and γ) and two in mice (i.e., α and β) [125]. The human receptor homologue for murine FRδ (also known as FR4 or folate binding protein 3) is expressed on splenic and thymic lymphocytes [126] and is particularly abundant on both nTreg and pTreg, in both mice and humans [65, 127, 128]. Since FR4 is a glycosyl phosphatidylinositol–anchored protein, adapter molecules may assist the receptor in the maintenance of Treg cell survival [129, 130] but little is known about its precise role. Importantly, based on its Treg-specific expression, FR4 can be used to discriminate Treg from Tconv following antigen stimulation [65].The high folate requirement of murine nTreg is met via upregulation of the FR4 surface expression, under the control of FoxP3 [65], suggesting a tight crosstalk between the transcription factor and receptor expression. Folate may also influence other Treg molecular pathways (summarised in [114]).


## 7. The Microbiome in Uveitis

Uveitis (intraocular inflammation) is an AD/AID which causes significant blindness and visual handicap worldwide (10–15% in the developed world) [131]. A failure of Treg as an underlying pathogenesis is suggested by the reduced numbers of circulating Treg in patients with uveitis, and since the number of circulating Treg correlates with certain taxa in the colonic microbiome and become stabilized in vivo by bacterial metabolites ([61, 63] see above), this supports a role for a dysregulated microbiome in uveitis. Uveitis occurs in two broad forms, anterior uveitis involving the iris and ciliary body and is closely linked to ankylosing spondylitis (AS) in many cases, and posterior uveitis involving the retina which is protected by the blood retinal barrier (BRB). Both forms of uveitis are subject to changes in the microbiome, particularly anterior uveitis, in conjunction with AS and IBD [132]. Specific autoantigens for human uveitis have been intensively sought but not identified (reviewed in [7]).Recently, an experimental model of spontaneous uveitis (experimental autoimmune uveoretinitis, EAU) in a transgenic TCR mouse with specificity for a retinal protein (potential autoantigen: interphotoreceptor retinol binding protein, IRBP), in which the mice next to uveitis also develop dysbiosis, has been described. It was suggested that the pathogenic antigen was an unidentified commensal protein which was crossreactive with the IRBP-TCR and, due to the loss of colonic IP (leaky gut), bacterial forms translocated across the gut wall and activated T cells in the gut draining lymph node. Included in this T cell population were autoreactive IRBP-specific T cells which in this mouse model are in increased frequency (~20%) [133]. Once activated, circulating T cells crossed the BRB and were further activated on contact with cognate antigen in the retina causing uveitis and retinal damage. The definitive proof-of-principle experiment was that no uveitis occurred in germ free IRBP-TCR specific mice, i.e., animals lacking a microbiome. Whether the commensal antigen translocated freely in lymphatics or was carried as cargo by trafficking antigen presenting cells is not clear, but trafficking of leukocytes to and from the gut occurs in both health and disease [85, 86], emphasizing a tight immunological crosstalk between the intestine and extraintestinal tissues. While an interesting hypothesis, a similar prevention of EAU was shown in germ free mice [26, 134] in which EAU was induced using a standard procedure of IRBP peptide emulsified in Complete Freund’s Adjuvant (CFA) [135]. In this model, disease is induced by a specific antigen in IRBP-specific T cells, in which the precursor frequency of antigen-specific T cells is vanishingly low. In this case, the effect of the microbiome on the induction of uveitis is more likely to be indirect. In another model, in which EAU develops spontaneously due to lymphopenia and imbalance in [Teff:Treg] ratio, we have shown that disease can be prevented by adoptive transfer of antigen-experienced Treg, but not by naïve Treg. Furthermore, there was evidence of Tan to Treg conversion [90].It is therefore relatively unexplained how the microbiome influences susceptibility to uveitis and in the context of this review, what might be the role of folate? Recent studies (reviewed in [136]) proposed that EAU in mice might be mediated through epigenetic changes possibly involving Tbx21 and Rorc—two transcription factors important for the differentiation of Treg and Th17 cells [137]. Interestingly, hypomethylation of these factors (along with FoxP3) was found in the retinas and RPE-choroidal tissues of B10.RIII mice developing CFA-induced EAU after IRBP immunization, together with an increase in proinflammatory IFNγ and IL17 and reduced DNA-methyltransferase 1 (DNMT1) expression in these tissues corresponding to the genes’ methylation status ([138]; reviewed in [136]). These findings highlight a requirement for folate to modulate inflammation at an epigenetic level in the prevention of AD and although not stated in that paper, may be linked to the interconversion of Tan to generate stable Treg, all under the control of FoxP3. In a separate study, upregulation of miRNA-223 was detected in IRBP-specific Th17 cells from an induced EAU mouse model [139] as well as in uveitis patients’ sera [140]. The latter study revealed a pattern of six miRNAs that were linked to inflammatory signalling cascades, such as MAPK, FOXO, and VEGF. Of those miRNAs highlighted, miRNA-223 stood out, as it not only promoted an inflammatory response through activation of DC and T cells but also hinted at a dysbiotic microbiome [141–143] with reduced colonic folate synthesis/bioavailability. Interestingly, hyperhomocysteinaemia, and its underlying polymorphisms in folate metabolism-associated genes [144], occurs in autoinflammatory (Behçet’s) uveitis patients [145] indicating a link for FA in noninfectious uveitis [146].It is clear thus that in the model of autoimmune uveitis, both experimental and clinical there is a strong association with dysbiosis and dysregulated folate metabolism. There is also a clear deficiency in theTreg function and/or numbers. Since folate is required for Treg physiology [65] the link between folate, Treg and autoimmune uveitis speaks for itself [64, 66, 77]. We propose that folate deficiency as part of a dysfunctional microbiome is part of the backdrop to autoimmune uveitis and probably other AD/AID.


## 8. The Microbiome and Its Metabolites as Therapeutic Intervention

There is much interest in potential therapeutic modulation of AD using microbiome-based metabolites including fecal microbial transplantation (FMT), SCFA, folate, and probiotics.


### 8.1. FMT

FMT has been proposed for treatment of AD but it is as yet unclear whether this approach may have a beneficial or deleterious effect [147]. FMT from patients with autoimmune Vogt-Kayanagi-Harada disease (VKH) exacerbated EAU in mice [148]. To date, there are no studies of FMT in uveitis patients.


### 8.2. SCFA

SCFA have been shown to be reduced in patients with RA and in mice with experimental arthritis and interestingly, treatment of such mice with SCFA induced upregulation of the AhR in regulatory B cells [149]. SCFA such as butyrate and propionate have also been effective in reducing inflammation in experimental models including in EAU [86] and endotoxin-induced uveitis [150] but to date have not been translated to clinical use in uveitis. However, the SCFA propionate has been trialed in patients with MS, and a significant shift in the balance towards Treg vs Th1/Th17 cells was observed [151].


### 8.3. Folate

Folate and folate supplementation have also been proposed for therapy of AD. In a focal model of EAE, a novel folate-aminopterin construct (EC2319) was found to be tolerated and provided anti-inflammatory benefit by suppressing CD68+ macrophage activity [152]. Similarly, a novel FR-targeted drug EC0746 was found to be effective in the treatment of EAE and EAU [153]. The folate receptor FRβ is expressed on activated macrophages and has been suggested as a target in AD including RA [154]. However, we suggest here that the preferential expression of FR4 on Treg promotes their expansion, particularly of colonic Treg, which then have the ability to suppress macrophage activity.


### 8.4. Probiotics

Delivery of dietary folate to supplement microbiome-generated folate is also a promising approach and may be incorporated in probiotics [155] in combination with prebiotics [156]. Folate-producing lactic acid bacilli, Streptococcus (Strep.) thermophilus CRL 808 and Strep. thermophilus CRL 415, have been shown to prevent intestinal inflammation in experimental models and proposed for the treatment of dysbiosis [157]. Probiotics have been proven to prevent EAU in mice, and delivery of folate-producing probiotics offers a safe and tolerable supplement in the treatment of AD [158].The mechanism of action of folate is distinctly different from other known vitamin-based immunomodulators such as vitamin A/atRA and D, as well as SCFA. While atRA, cholecalciferol (vitamin D3) and SCFA had been found to enhance the peripheral differentiation of naïve T cells into pTreg [72, 116–118], and folate is required during clonal expansion of nTreg [66]. Hence, folate exerts its modulatory effects at two levels in vivo, namely, (1) as a mediator of epigenetic control in thymic nTreg; and (2) as an antiapoptotic signal in induced pTreg supporting their survival in the circulation. As adoptive transfer of antigen-experienced Treg prevents development of EAU [88, 90], it would be interesting to see whether folate-treated antigen-experienced (or even naïve) Treg were more effective in control of AD. This could be combined with SCFA to maximize the differentiation of naϊve T cells to Treg. Complementary effects of the two metabolites are likely based on their different modes of action.


## 8.1. FMT

FMT has been proposed for treatment of AD but it is as yet unclear whether this approach may have a beneficial or deleterious effect [147]. FMT from patients with autoimmune Vogt-Kayanagi-Harada disease (VKH) exacerbated EAU in mice [148]. To date, there are no studies of FMT in uveitis patients.


## 8.2. SCFA

SCFA have been shown to be reduced in patients with RA and in mice with experimental arthritis and interestingly, treatment of such mice with SCFA induced upregulation of the AhR in regulatory B cells [149]. SCFA such as butyrate and propionate have also been effective in reducing inflammation in experimental models including in EAU [86] and endotoxin-induced uveitis [150] but to date have not been translated to clinical use in uveitis. However, the SCFA propionate has been trialed in patients with MS, and a significant shift in the balance towards Treg vs Th1/Th17 cells was observed [151].


## 8.3. Folate

Folate and folate supplementation have also been proposed for therapy of AD. In a focal model of EAE, a novel folate-aminopterin construct (EC2319) was found to be tolerated and provided anti-inflammatory benefit by suppressing CD68+ macrophage activity [152]. Similarly, a novel FR-targeted drug EC0746 was found to be effective in the treatment of EAE and EAU [153]. The folate receptor FRβ is expressed on activated macrophages and has been suggested as a target in AD including RA [154]. However, we suggest here that the preferential expression of FR4 on Treg promotes their expansion, particularly of colonic Treg, which then have the ability to suppress macrophage activity.


## 8.4. Probiotics

Delivery of dietary folate to supplement microbiome-generated folate is also a promising approach and may be incorporated in probiotics [155] in combination with prebiotics [156]. Folate-producing lactic acid bacilli, Streptococcus (Strep.) thermophilus CRL 808 and Strep. thermophilus CRL 415, have been shown to prevent intestinal inflammation in experimental models and proposed for the treatment of dysbiosis [157]. Probiotics have been proven to prevent EAU in mice, and delivery of folate-producing probiotics offers a safe and tolerable supplement in the treatment of AD [158].The mechanism of action of folate is distinctly different from other known vitamin-based immunomodulators such as vitamin A/atRA and D, as well as SCFA. While atRA, cholecalciferol (vitamin D3) and SCFA had been found to enhance the peripheral differentiation of naïve T cells into pTreg [72, 116–118], and folate is required during clonal expansion of nTreg [66]. Hence, folate exerts its modulatory effects at two levels in vivo, namely, (1) as a mediator of epigenetic control in thymic nTreg; and (2) as an antiapoptotic signal in induced pTreg supporting their survival in the circulation. As adoptive transfer of antigen-experienced Treg prevents development of EAU [88, 90], it would be interesting to see whether folate-treated antigen-experienced (or even naïve) Treg were more effective in control of AD. This could be combined with SCFA to maximize the differentiation of naϊve T cells to Treg. Complementary effects of the two metabolites are likely based on their different modes of action.


## 9. Folate Deficiency and Current Therapy for AD

Folate deficiency has strong implications for overall health and may also complicate the management of AD. Methotrexate (Mtx; amethopterin) is routinely used to manage a range of AD including certain types of uveitis. As indicated above (see Figure2), the drug’s effectiveness and toxicity vary among individuals and are likely determined by polymorphisms in folate, pyrimidine, and purine metabolic enzymes [159]. The mechanism of action is presumed to be inhibition of T cell proliferation but overall, the efficacy of Mtx in uveitis is limited [160–163]. This may be due to the drug’s competitive antifolate effects. Macrophages are major agents of tissue destruction in AD including uveitis [164, 165] and require high amounts of folate to remain active via high surface expression of the folate receptor FRβ [166, 167]. Mtx is structurally similar to folate with 1000-fold higher affinity for the enzyme dihydrofolate reductase (DHFR) [168, 169] (Figure 3). It thus starves cells with high folate requirement such as activated macrophages, thereby abrogating the cells’ survival and halting disease progression. While this might be of benefit to control tissue-damaging macrophages in noninfectious uveitis [170], there may be a negative side-effect on the Treg function. Thus, the action of Mtx is likely to be rather complex having both antiproliferative and anti-inflammatory roles and targeting activated macrophages as well as Treg. In the event, Mtx seems to be more effective in acute AU (with significant myeloid involvement) than in sight-threatening chronic PU (with Th1 and Th17 Teff cells being the main drivers of disease).An alternative mechanism for the immunosuppressive effect of Mtx and other immunosuppressants has been proposed: in humans, hypomethylation of the TSDR (Treg-specific demethylated region) is required for the functional stability of peripherally expanding FoxP3+ pTreg [171] and correlates with the duration of oral immunosuppressive therapy. This indicates that in patients, conventional immunosuppression can induce pTreg leading to remission of the disease (reviewed in [172]). This finding is particularly interesting with regard to folate being a mediator of epigenetic programming (Figure 3) and emphasizes the importance of coordinating appropriate treatment regimens with the dynamics and kinetics of disease progression.


## 10. Conclusions

Folate as one of the colonic bacterial fermentation products is a powerful micronutrient with a broad spectrum of well-known functions at various levels. Its importance in ocular health is well established [144–146, 173–179], but its immunomodulatory properties represent an emerging concept for functional Treg stabilization. The colon is a significant folate depot [19] that participates in metabolism and contributes to bioavailable folate levels. It is an important immunological organ with “unconventional IP” properties [50] with a core function in oral tolerance [180] and prevention of microbial antigen escape into the general circulation. Pathological structural (“leaky gut”) and/or environment-induced proinflammatory changes (dysbiosis) in the gut therefore jeopardize this role, allowing for the transmigration of commensal antigen into the blood stream. The use of folate- and SCFA-producing microbes has the potential to form the basis for a novel approach to prophylactic control of AD. While emerging data suggests oral probiotics [158, 181] or alternatively FMT [182] might help eliminate dysbiosis, knock-on effects on colonic folate synthesis/bioavailability and its implications for immune cell functioning remain to be explored. As dysbiosis has been found to occur in a range of AD, including uveitis [36, 183, 184], targeted administration of certain beneficial folate-producing bacteria or even direct oral folate treatment in AD merits clinical evaluation as a low-risk effective adjunctive treatment option. A daily oral folate supplementation of 5,000–10,000 μg (i.e., 25–50 times the daily recommendation) is generally well tolerated by healthy, nonpregnant individuals. Neurological side-effects have been reported in cases of pernicious anemia (B12 hypovitaminosis), and interference with intestinal zinc absorption has been demonstrated in animals which is likely irrelevant in humans (reviewed in [185]). Some evidence suggests that long-term folic acid supplementation can promote the progression of preexisting malignant lesions in advanced age [186]. Importantly, as Treg phenotypes between mice and humans vary to some degree [120, 121], research is needed to clarify those differences and assess whether those AD-attenuating folate effects observed in mice are equally valid in humans. Regardless, folate is an important and undervalued micronutrient with powerful direct and indirect effects in the organism and a potential regulatory role in autoimmunity and chronic inflammation.



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*Source: 9998200-2021-05-20.xml*