# Fabrication of Highly Rough Ag Nanobud Substrates and Surface-Enhanced Raman Scattering ofλ-DNA Molecules

Authors: Chuyun Deng; Wanyun Ma; Jia-Lin Sun
Journal: Journal of Nanomaterials
 (2012)

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## Abstract

Raman scattering signals can be enhanced by several orders of magnitude on surface-enhanced Raman scattering (SERS) substrates made from noble metal nanostructures. Some SERS substrates are even able to detect single-molecule Raman signals. A novel silver nanobud (AgNB) substrate with superior SERS activity was fabricated with a solid-state ionics method. The AgNB substrate was formed by tightly collocated unidirectional 100 nm size silver buds, presenting a highly rough surface topography. Distinct SERS signals of singleλ-DNA molecules in water were detected on AgNB substrates. AgNB substrates were compared with disordered silver nanowire (AgNW) substrates manufactured by the same method through the SERS detection of λ-DNA solutions. This original AgNB substrate provides a reliable approach towards trace analysis of biomacromolecules and promotes the utilization of the SERS technique in biomedical research.


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## Body

## 1. Introduction

Raman scattering is a characterization technique that provides fingerprint recognition by molecular vibrational and rotational energy levels indicated by the Raman peaks. Raman spectroscopy is especially suitable for biomedical studies because of its advantages in nondestructive detection, rich configuration information, easy sample preparation, and freedom from interference by water. Many applications of Raman spectroscopy in DNA, RNA, and protein research have been reported [1–5]. In recent decades, noble metal nanostructures have been discovered to have good Raman scattering enhancement ability. According to electromagnetic theories, external light can polarize free electrons on noble metal nanostructured surfaces and thereby cause vibration of the entire free surface electrons. When the frequency of external light matches that of the surface electron vibration, local charge distribution will be affected and the local field will be strongly enhanced due to surface plasmon resonance (SPR) phenomenon. For molecules adsorbed on such noble metal nanostructures, their Raman signals will be markedly intensified by SPR effects [6]. It was reported that silver nanostructure surfaces exhibited surface-enhanced Raman spectra of adsorbed molecules by several orders of magnitude and, in some cases, single-molecule Raman signals could be detected. Hence, surface-enhanced Raman scattering (SERS) substrates based on silver nanostructures have been widely employed in chemical and biomedical detection [7–14]. A large amount of outstanding metal nanostructures have been fabricated by our solid-state ionics method [15–17]. Among them a highly rough unidirectional silver nanobud (AgNB) structure has excellent SERS activity. In this work, the SERS activity of AgNBs is established by detecting the Raman signal of λ-DNA on AgNB substrate at the single-molecule level.


## 2. Materials and Methods

### 2.1. Fabrication of AgNB Structures

Our solid-state ionics method is based on the ion-conducting ability of superionic conductor thin films that are comparable to molten salts or electrolyte solutions. The superionic conductor thin film was designed as the medium to transport metal ions between metal electrodes and generate a directional ionic current. Metal atoms at the anode were ionized by the external direct current (DC) electric field and transported to the cathode through the superionic conductor thin film to grow into various nanostructured materials [15–17].The preparation process for highly rough silver nanostructures is shown in Figure1. Thin silver films of 1 μm thickness were deposited onto two sides of a clean quartz substrate to serve as the electrodes. The interelectrode distance was 8 cm. A piece of RbAg4I5 superionic conductor thin film, about 400 nm thick with a 0.12 Ω−1 cm−1 ionic conductivity at room temperature, was deposited onto the whole surface of the quartz substrate as the ion-conducting medium [17]. All deposition processes were conducted at room temperature and 10−4 Pa vacuum. The external DC electric field with a constant electric current was provided by a SourceMeter (Keithley 2400, USA). Silver atoms at the anode were ionized and transported to the cathode to grow into AgNB structures through the RbAg4I5 thin film, while electrons were transported to the cathode through external conducting wires. After 3 days, silver nanostructures of square centimeter size were obtained in the cathode area. Such silver nanostructures were composed of tightly collocated 100 nm sized units as revealed by scanning electron microscopy (SEM) (Figure 2(a)). The 100 nm sized units were arranged like nanoscale buds growing in the same direction, leading to a highly rough surface topography, and these silver nanostructures were termed silver nanobuds (AgNBs).Figure 1
Fabrication of AgNB structures by superionic conductor thin film. (a) Clean quartz substrate was placed in the deposition chamber at room temperature and 10−4 Pa vacuum. (b) 1 μm thick thin silver films were deposited on the quartz substrate as the electrodes. The distance between two electrodes was 8 cm. (c) 400 nm thick RbAg4I5 superionic conductor thin film was deposited on the whole substrate as the ion-conducting medium. (d) A constant electric current was provided as the external electric field to form a directional ionic current. Silver atoms at the anode were ionized and transported to the cathode to grow into AgNB structures through the RbAg4I5 thin film, while electrons were transported to the cathode through external conducting wires.SEM and EDS analyses of AgNB structures. (a) SEM image of AgNB structures (the external electric current is 12μA in the fabrication process). AgNB structures were highly rough, dense, and unidirectional, composed of tightly collocated 100 nm sized units like nanoscale buds growing in the same direction. (b) SEM image of AgNW structures with disordered and loose configuration obtained by decreasing the external electric current to 3 μA in the fabrication process. (c) EDS analysis of AgNB structures.
(a)
(b)
(c)The external constant electric current or, rather, the ionic current density in the RbAg4I5 thin film is the crucial parameter in the fabrication of silver nanostructures. The growth of silver nanostructures is maintained by continuous and stable ionic current as a result of the external constant electric field. Different nanostructures will be obtained as the intensity of external electric current changes. The external electric current was 12 μA in the growth of AgNBs with unidirectional and dense configuration (Figure 2(a)). However, when the external electric current was decreased to 3 μA, disordered and loose silver nanowires (AgNWs) were obtained (Figure 2(b)). The AgNBs were made of silver according to energy dispersive spectroscopy (EDS) analysis (Figure 2(c)).


### 2.2. Experimental Setup for SERS Analysis

The detection ofλ-DNA on AgNB substrates was carried out on a confocal Raman spectrometer (Renishaw RM2000, UK). The excitation light was a focused Ar+ laser (excitation wavelength 514 nm, focal area ~5 μm × 5 μm with a 20× objective). The exposure time was 20 s and the detection range was 400–2000 cm−1. Figure 3 illustrates the sample preparation. As-grown AgNBs were fixed on a clean slide as the SERS substrate, and a 10 μL drop of λ-DNA (Beijing Huamei Scientific Co., China) water solution was added onto the AgNBs, followed by placement of a clean 24 mm × 24 mm coverslip of 0.17 mm thickness on the slide to seal the λ-DNA solution. Generally there would be a little spillage of the solution. The incident laser was directed vertically down and laser power on the sample was 4.7 mW during the analysis.Figure 3
Preparation ofλ-DNA samples on AgNB substrates. As-grown AgNBs were fixed on a clean slide as the SERS substrate, and then a 10 μL drop of λ-DNA water solution was added onto the AgNBs, thereafter a clean 24 mm × 24 mm coverslip of 0.17 mm thickness was placed on the slide to seal the λ-DNA solution. The incident laser was directed vertically down for the analysis.Sixλ-DNA concentrations (50, 20, 10, 1, 0.1, and 0.01 ng/μL) were examined. The average amount of λ-DNA in the detection area for each solution was estimated from the λ-DNA concentrations, the solution volume (slightly smaller than 10 μL due to the spillage), the surface area of the coverslip (24 mm × 24 mm) and the focal area of the laser (~5 μm × 5 μm). For the 0.1 ng/μL solution, the average number of λ-DNA molecules in the detection area was less than 0.8. This result indicated that the 0.1, 0.01 ng/μL solutions were capable of revealing whether the AgNB substrate had single-molecule level SERS activity. The spectra of the AgNB substrate itself and a 20 ng/μL λ-DNA solution on clean glass substrate without AgNB were also analyzed as controls.


## 2.1. Fabrication of AgNB Structures

Our solid-state ionics method is based on the ion-conducting ability of superionic conductor thin films that are comparable to molten salts or electrolyte solutions. The superionic conductor thin film was designed as the medium to transport metal ions between metal electrodes and generate a directional ionic current. Metal atoms at the anode were ionized by the external direct current (DC) electric field and transported to the cathode through the superionic conductor thin film to grow into various nanostructured materials [15–17].The preparation process for highly rough silver nanostructures is shown in Figure1. Thin silver films of 1 μm thickness were deposited onto two sides of a clean quartz substrate to serve as the electrodes. The interelectrode distance was 8 cm. A piece of RbAg4I5 superionic conductor thin film, about 400 nm thick with a 0.12 Ω−1 cm−1 ionic conductivity at room temperature, was deposited onto the whole surface of the quartz substrate as the ion-conducting medium [17]. All deposition processes were conducted at room temperature and 10−4 Pa vacuum. The external DC electric field with a constant electric current was provided by a SourceMeter (Keithley 2400, USA). Silver atoms at the anode were ionized and transported to the cathode to grow into AgNB structures through the RbAg4I5 thin film, while electrons were transported to the cathode through external conducting wires. After 3 days, silver nanostructures of square centimeter size were obtained in the cathode area. Such silver nanostructures were composed of tightly collocated 100 nm sized units as revealed by scanning electron microscopy (SEM) (Figure 2(a)). The 100 nm sized units were arranged like nanoscale buds growing in the same direction, leading to a highly rough surface topography, and these silver nanostructures were termed silver nanobuds (AgNBs).Figure 1
Fabrication of AgNB structures by superionic conductor thin film. (a) Clean quartz substrate was placed in the deposition chamber at room temperature and 10−4 Pa vacuum. (b) 1 μm thick thin silver films were deposited on the quartz substrate as the electrodes. The distance between two electrodes was 8 cm. (c) 400 nm thick RbAg4I5 superionic conductor thin film was deposited on the whole substrate as the ion-conducting medium. (d) A constant electric current was provided as the external electric field to form a directional ionic current. Silver atoms at the anode were ionized and transported to the cathode to grow into AgNB structures through the RbAg4I5 thin film, while electrons were transported to the cathode through external conducting wires.SEM and EDS analyses of AgNB structures. (a) SEM image of AgNB structures (the external electric current is 12μA in the fabrication process). AgNB structures were highly rough, dense, and unidirectional, composed of tightly collocated 100 nm sized units like nanoscale buds growing in the same direction. (b) SEM image of AgNW structures with disordered and loose configuration obtained by decreasing the external electric current to 3 μA in the fabrication process. (c) EDS analysis of AgNB structures.
(a)
(b)
(c)The external constant electric current or, rather, the ionic current density in the RbAg4I5 thin film is the crucial parameter in the fabrication of silver nanostructures. The growth of silver nanostructures is maintained by continuous and stable ionic current as a result of the external constant electric field. Different nanostructures will be obtained as the intensity of external electric current changes. The external electric current was 12 μA in the growth of AgNBs with unidirectional and dense configuration (Figure 2(a)). However, when the external electric current was decreased to 3 μA, disordered and loose silver nanowires (AgNWs) were obtained (Figure 2(b)). The AgNBs were made of silver according to energy dispersive spectroscopy (EDS) analysis (Figure 2(c)).


## 2.2. Experimental Setup for SERS Analysis

The detection ofλ-DNA on AgNB substrates was carried out on a confocal Raman spectrometer (Renishaw RM2000, UK). The excitation light was a focused Ar+ laser (excitation wavelength 514 nm, focal area ~5 μm × 5 μm with a 20× objective). The exposure time was 20 s and the detection range was 400–2000 cm−1. Figure 3 illustrates the sample preparation. As-grown AgNBs were fixed on a clean slide as the SERS substrate, and a 10 μL drop of λ-DNA (Beijing Huamei Scientific Co., China) water solution was added onto the AgNBs, followed by placement of a clean 24 mm × 24 mm coverslip of 0.17 mm thickness on the slide to seal the λ-DNA solution. Generally there would be a little spillage of the solution. The incident laser was directed vertically down and laser power on the sample was 4.7 mW during the analysis.Figure 3
Preparation ofλ-DNA samples on AgNB substrates. As-grown AgNBs were fixed on a clean slide as the SERS substrate, and then a 10 μL drop of λ-DNA water solution was added onto the AgNBs, thereafter a clean 24 mm × 24 mm coverslip of 0.17 mm thickness was placed on the slide to seal the λ-DNA solution. The incident laser was directed vertically down for the analysis.Sixλ-DNA concentrations (50, 20, 10, 1, 0.1, and 0.01 ng/μL) were examined. The average amount of λ-DNA in the detection area for each solution was estimated from the λ-DNA concentrations, the solution volume (slightly smaller than 10 μL due to the spillage), the surface area of the coverslip (24 mm × 24 mm) and the focal area of the laser (~5 μm × 5 μm). For the 0.1 ng/μL solution, the average number of λ-DNA molecules in the detection area was less than 0.8. This result indicated that the 0.1, 0.01 ng/μL solutions were capable of revealing whether the AgNB substrate had single-molecule level SERS activity. The spectra of the AgNB substrate itself and a 20 ng/μL λ-DNA solution on clean glass substrate without AgNB were also analyzed as controls.


## 3. Results and Discussion

SERS spectra of the six samples and two control groups are shown in Figure4. No evident peak was seen in the red curve of λ-DNA-only control, whereas several distinct peaks were exhibited by the 20 ng/μL sample, for example, at 979, 1380, and 1594 cm−1. Such a difference provided evidence of a remarkable enhancement from the AgNB substrate. The 0.1 and 0.01 ng/μL solutions shared common features, including the quantity and intensities of characteristic peaks, distinguishing them from other four samples. According to the estimation result, these two groups both represented single-molecule signals, and hence the single-molecule level SERS activity of AgNB substrates has been demonstrated.Figure 4
SERS spectra of sixλ-DNA-AgNB samples (black) and two control samples (red and blue). The red spectrum was for 20 ng/μL λ-DNA solution on a clean glass substrate without AgNB. The blue spectrum was for the AgNB substrate itself. The laser power on the sample was 4.7 mW and the exposure time was 20 s.Information on secondary structures, backbone conformations and phosphate group interactions are indicated in the Raman spectra of DNA molecules. Strong and distinct characteristic peaks were all labeled in Figure4 and their tentative assignments were presented in Table 1. Common peaks of the six solutions are approximately at 890, 1045, 1161, 1380, 1456, 1596, and 1694 cm−1. The 890, 1161, and 1456 cm−1 peaks reflect vibrational and deformation modes of deoxyribose. The 1045 cm−1 peak represents the phosphate group interaction, and those at 1380, 1596 and 1694 cm−1 correspond to thymine, adenine and guanine (T, A, G) [18–23]. In addition, there are two more common peaks at 1000 and 1260 cm−1 for the 10, 1, 0.1, and 0.01 ng/μL samples. Moreover, the single-molecule samples (0.1 and 0.01 ng/μL) share another two peaks at 1285 cm−1 and 1486 cm−1. The 20 and 50 ng/μL, samples of higher concentration have fewer common features with the four solutions of lower concentration. We conclude that the differences between these samples are mainly attributed to changing spatial configurations of long strand DNA molecules in water. At low concentration, the interactions between λ-DNAs are weaker, allowing λ-DNA molecules to freely extend and therefore the more similar are the Raman spectra. At higher concentration, the interactions between λ-DNAs are stronger, λ-DNA molecules are more likely to condense, markedly affecting the Raman spectra. The low concentration samples are able to display detection of a freely extended single λ-DNA molecule.Table 1
Tentative assignments for SERS spectra ofλDNAs on AgNB substrate.
λDNA concentration
Tentative assignmenta,b
50 ng/μL
20 ng/μL
10 ng/μL
1 ng/μL
0.1 ng/μL
0.01 ng/μL
687
662
664
G
834
PO
2
-
875
895
943
892, 930
887
887
Deoxyribose
974
979
1000
1000
980, 1001
976, 1000
Deoxyribose
1045
1052
1039
1042
1039
1044
PO
2
-
1161
1166
1168
1164
1166
Deoxyribose
1255
1260
1258
1263
T, C, A
1288
1283
C, A
1356
1321
A, G
1380
1380
1380
1377
1377
1378
T, A, G
1447
1454
1461
1448
1456,1486
1458,1486
Deoxyribose, CH2
1534
A
1597
1594
1599
1573,1600
1596
1592
A, G
1690
1689
1686
1684
1681
T
aBased on [18–23]. bA: adenine; G: guanine; C: cytosine; T: thymine.The disordered AgNW structures in Figure2(b) are not comparable to the AgNB structures in respect of SERS activity. Spectra of λ-DNA samples (50 ng/μL) on the AgNB substrate and on the disordered AgNW substrate are displayed in Figure 5. The characteristic peaks of λ-DNA on the AgNB substrate were more distinguishable than those on the disordered AgNW substrate, with relatively high intensity and low fluorescence background. In addition, the spectrum obtained on the AgNB substrate had seven distinct peaks, while that found with the disordered AgNW substrate only had four.Figure 5
SERS spectra ofλ-DNA samples (50 ng/μL) on the AgNB substrate (a) and on the disordered AgNW substrate (b). Characteristic peaks of λ-DNA on the AgNB substrate were more distinguishable than those on the disordered AgNW substrate, with relatively high intensity and low fluorescence background.SERS activity is strongly dependent on the surface topography of the substrate. It is demonstrated in hot-spot theories that the localized field enhancement is more intense with more hot-spots on the surface of noble metal materials, and so the amount of hot-spots is related to SERS activity [24–27]. The AgNB substrate has nanoscale roughness and a unidirectional dense structure, making it a perfect environment for hot-spots and the generation of significant localized field enhancements. The disordered AgNW substrate only has microscale roughness and a loose structure, precluding the generation of sufficient hot-spots to bring about comparable SERS activity. The results demonstrate that most of the excitation energy was transferred into Raman scattering of detected molecules on the AgNB substrate through SPR effects, and the signal-to-noise ratio was heightened.


## 4. Conclusions

In this letter, we have reported a highly rough and unidirectional AgNB substrate with excellent SERS activity. We have shown that AgNB substrates are capable of detectingλ-DNA at the single-molecule level, and discussed the SERS spectra of λ-DNA molecules. We have also demonstrated that such dense and unidirectional AgNB structures are better SERS substrates than similarly made loose and disordered AgNW structures. This novel AgNB substrate is associated with a much lower detection limit than former SERS substrates, providing an efficient and reliable approach for biomedical analysis.



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*Source: 820739-2012-09-05.xml*