# Functional Inflammatory Genotypes in Ischemic Stroke: Could We Use Them to Predict Age of Onset and Long-Term Outcome?

Authors: Stella Marousi; Anna Antonacopoulou; Haralambos Kalofonos; Panagiotis Papathanasopoulos; Marina Karakantza; John Ellul
Journal: Stroke Research and Treatment
 (2011)

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## Abstract

Functional single-nucleotide polymorphisms (SNPs) of inflammatory cytokines have been previously related to the occurrence of an ischemic stroke (IS). We investigated whether five functional SNPs (i.e., TNF-α-308G>A, IL6-174G>C, IL12B 1188A>C, IL4-589C>T, and IL10-1082G>A) might be associated with the age of onset and 6-month outcome of an acute IS. A probe-free real-time PCR methodology was used to genotype 145 consecutively admitted cases with a first-ever IS. Simple Kaplan-Mayer and adjusted Cox regression analyses showed no association between inflammatory genotypes and the age of IS onset. IL6-174G>C, IL12B 1188A>C, IL4-589C>T, and IL10-1082G>A were not found to significantly contribute to the long-term outcome of the disease. However, carriage of the TNF-α-308 GG genotype was significantly associated with reduced odds for an adverse outcome. Larger studies are needed to confirm our results.


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## Body

## 1. Introduction

In the last decade, inflammatory mechanisms have been implicated both in the  manifestation and evolution of brain ischemia [1]. Immune inflammatory processes may in time predispose to ischemic stroke (IS) through precipitation of atherosclerotic disease [2] and sustainment of atrial fibrillation [3]. Moreover, salvation of the ischemic penumbra and final size of the brain infarct, both of which strongly correlate to clinical outcome after an IS, seem to be massively regulated by networks of poststroke inflammatory responses    [4, 5]. Thus, proinflammatory and anti-inflammatory cytokines are important mediators of the pathophysiological events which precede an acute IS    [6] and have been further related to the clinical outcome of the disease (reviewed in    [7]).Among the various proinflammatory cytokines, tumor necrosis factor-alpha (TNF-α) and interleukin (IL) 6 seem to actively participate in the immune-mediated inflammation of stroke    [5, 8]. IL12 is an important regulatory cytokine with proinflammatory inclination    [9], which is also found upregulated during stroke [10]. IL4 and IL10 are cytokines of the anti-inflammatory arm which counteract the actions of proinflammatory molecules, and have been found suppressed prior to, as well as after a cerebral ischemic event    [11–13].On grounds of genetic regulation, the production of these inflammatory cytokines seems to be significantly influenced by the presence of point mutations located within regulatory gene regions, known as functional single-nucleotide polymorphisms (SNPs) [14]. SNP-association studies of inflammatory cytokines have been previously conducted in cases of IS, under the hypothesis that a genetic predisposition to enhanced (or suppressed) production of T-helper 1 (Th1) or Th2 cytokines could possibly modify the risk of the disease (reviewed in [15]). However, so far, none of these studies has addressed the question of whether such functional genetic variances could predispose to the premature onset of cerebrovascular disease or alter its clinical outcome.In the present study, we investigated the possible impact of five common SNPs into the age of onset and long-term functional outcome of an acute IS. The studied mutations included three SNPs of proinflammatory cytokines (i.e., TNF-α-308G>A, IL6-174G>C, and IL12B 1188A>C), and two more SNPs concerning the major anti-inflammatory cytokines (i.e., IL4-589C>T, and IL10-1082G>A). These SNPs have been previously studied in various inflammatory diseases (e.g., rheumatic diseases, asthma, and inflammatory bowel disease) producing positive correlations    [16–20]. Each of the above polymorphisms has been reported to exert functional properties in in vitro and ex vivo studies, following mitogenic stimulation    [16, 21–24]. A more robust evidence for their functionality has been given for TNF-α-308G>A which has been found to affect a transcription-binding site and result in the formation of an altered transcription element [25] and also for IL10-1082G>A which contains a putative ETS-like transcription factor binding site    [26].


## 2. Methods

### 2.1. Study Population

We recruited 145 acute IS patients who presented consecutively at the Emergency Department of the University Hospital of Patras, Patras, Greece, with signs and symptoms of a first-ever cerebrovascular event, and were admitted in the Neurology and General Medicine wards between September 2006 and December 2007. Patients with intracerebral or subarachnoid haemorrhage, transient ischemic attacks (TIAs), chronic inflammatory/rheumatic diseases, comorbid malignancy, and strokes secondary to rare conditions (i.e., traumatic carotid dissection, endocarditis) were excluded from the study. Blood samples and baseline clinical data were collected upon admittance to the Emergency Department. Stroke severity on admission was assessed using the Scandinavian stroke scale. All patients had a brain computerized tomography (CT) on admission, and a second brain imaging (CT or magnetic resonance imaging) during hospitalization. Investigations such as carotid ultrasonography, carotid CT angiography, transesophageal heart ultrasonography, serology and coagulation studies, were performed according to patient-specific clinical criteria. Stroke subtype classification was based on TOAST definitions [27]. As confirmed at the baseline interview, participants were Caucasian in origin, and provided their informed consent at inclusion.  The study protocol was approved by the Ethical Committee of the University Hospital of Patras.


### 2.2. Data and Clinical Assessments

Demographics, past medical history, and conventional stroke risk factors were collected at inclusion. Arterial hypertension was considered present if it was clearly documented (>140/90 mmHg) or when treated. Diabetes mellitus was defined as fasting glucose >126 mg/dL or current use of antidiabetic medication. Hypercholesterolemia was noted if fasting cholesterol levels were >220 mg/dL or when treated. History of angina, myocardial infarction and heart failure were assembled in “ischemic heart disease”. Smoking, either active or ceased within the last 6 months, was recorded as current. By vascular death, we considered death in relation to vascular complications (i.e., stroke, myocardial infarction, pulmonary embolism, and deep vein thrombosis). Patients were followed-up for 6 months registering medications, disease relapses, deaths, and functional outcome measured by the Barthel Index (BI), which is a reliable and widely used disability scale [28].


### 2.3. DNA Extraction and Genotyping Assays

DNA was extracted from whole blood in EDTA, according to standard purification protocols by Qiagen, QIAamp DNA blood Mini Kit, and stored at −80°C until use. For the genotyping, we applied a real-time polymerase chain reaction (RT-PCR) technique, which discriminates alleles by detecting differences in the melting temperatures of the products (Tm). Differences in Tm are produced by the introduction of a GC-tail at the end of one of the two allele-specific primers [29], and measured by SYBR Green fluorescence. For the studied SNPs, the method was used for the first time. Prototypically designed primers and conditions can be seen in Table 1. Primers were designed using the DNAman version 4.02 software, tested for specificity with BLAST (http://blast.ncbi.nlm.nih.gov/), and synthesized by Metabion International AG, Germany. All samples were processed in duplicates, and genotyping of 10% random samples for each SNP was confirmed by sequencing (VBC-BIOTECH Service GmbH, Sequencing Unit, Vienna, Austria). Analyses were employed in the Stratagene Mx3000P  qPCR machine, using the Brilliant QPCR MasterMix by Stratagene, La Jolla, USA.Table 1
Allele-specific primers and real-time PCR conditions.
Allele-specific primersReal-time PCR conditionsIL4-589C>TSegment  1-Amplification (40 cycles)(i) Denaturation at 95°C  for 30′′ (ii) Annealing at 56°C  for 30′′ (iii) Extension at 72°C   for 20′′Segment 2-Qualitative data collection  (115 cycles):70–95°C for 18′′ (Specifically for TNF-α-308G>A: annealing at 61°C  for 25′′)FRW C primer  FRW T  primer5′-GCGGCGCGGCCCACTAAACTTGGGAGAACATTGAC-3′5′-AGTAAACTTGGGAGAACATTGTT-3′REV   primer5′-GGCAGAATAACAGGCAGAC-3′IL10-1082G>AFRW G  primer  FRW A  primer5′-GCGGCGCGGCGG-TTAGTAAGGCTTCTTTGGGTG -3′5′-TACTACTAAGGCTTCTTTGGGAA -3′REV  primer5′-CTGGATAGGAGGTCCCTTAC-3′TNF-α-308G>AFRW G  primer*5′-GCGGCGCGGCGG-CTGGCTGAACCCCGTCTC-3′FRW A  primer*5′-AGGCTGAACCCCGTGCT-3′REV  primer*5′-AAGGAAACAGACCACAGACCTG-3′IL6-174G>CFRW G  primer*5′-ATTGTGACGTCCTTTAGCATC-3′FRW C  primer*5′-GCGGGCGGGCCG-ATTGTGACGTCCTTTAGGTTG-3′REV  primer*5′-ATGACGACCTAAGCTGCAC-3′IL12B 1188A>CFRW A  primer*5′-TTTCAATGAGCATTTAGCAACT-3′FRW C  primer*5′-GCGGCGCGGCGG-TACAATGAGCATTTAGCATGG-3′REV  primer*5′-TAGGATCACAATGATATCTTTGC-3′*Primer designed on the complementary sequence. FRW: forward, REV: reverse.Underlined are sites of introduced mismatches. Bold are the polymorphic alleles. Italic is the intoduced GC-tail.


### 2.4. Statistical Analysis

A Kaplan-Mayer disease-free survival analysis was used to test for possible differences in the age of IS onset, depending on the carriage of specific inflammatory genotype. Statistical significance was expressed withP log ranks. Cox regression analyses were further conducted for each SNP to include possible known confounders (i.e., sex, hypertension, diabetes, atrial fibrillation, hyperlipidemia, smoking) in the overall effect. To assess the potential genetic contribution in the odds of having a bad functional outcome, a binary logistic regression analysis was applied after adjustments for age, sex, vascular risk factors, stroke severity on admission and TOAST categories. Data of the regressions are given as Odds Ratios (OR) with 95% confidence intervals (95% CI).


## 2.1. Study Population

We recruited 145 acute IS patients who presented consecutively at the Emergency Department of the University Hospital of Patras, Patras, Greece, with signs and symptoms of a first-ever cerebrovascular event, and were admitted in the Neurology and General Medicine wards between September 2006 and December 2007. Patients with intracerebral or subarachnoid haemorrhage, transient ischemic attacks (TIAs), chronic inflammatory/rheumatic diseases, comorbid malignancy, and strokes secondary to rare conditions (i.e., traumatic carotid dissection, endocarditis) were excluded from the study. Blood samples and baseline clinical data were collected upon admittance to the Emergency Department. Stroke severity on admission was assessed using the Scandinavian stroke scale. All patients had a brain computerized tomography (CT) on admission, and a second brain imaging (CT or magnetic resonance imaging) during hospitalization. Investigations such as carotid ultrasonography, carotid CT angiography, transesophageal heart ultrasonography, serology and coagulation studies, were performed according to patient-specific clinical criteria. Stroke subtype classification was based on TOAST definitions [27]. As confirmed at the baseline interview, participants were Caucasian in origin, and provided their informed consent at inclusion.  The study protocol was approved by the Ethical Committee of the University Hospital of Patras.


## 2.2. Data and Clinical Assessments

Demographics, past medical history, and conventional stroke risk factors were collected at inclusion. Arterial hypertension was considered present if it was clearly documented (>140/90 mmHg) or when treated. Diabetes mellitus was defined as fasting glucose >126 mg/dL or current use of antidiabetic medication. Hypercholesterolemia was noted if fasting cholesterol levels were >220 mg/dL or when treated. History of angina, myocardial infarction and heart failure were assembled in “ischemic heart disease”. Smoking, either active or ceased within the last 6 months, was recorded as current. By vascular death, we considered death in relation to vascular complications (i.e., stroke, myocardial infarction, pulmonary embolism, and deep vein thrombosis). Patients were followed-up for 6 months registering medications, disease relapses, deaths, and functional outcome measured by the Barthel Index (BI), which is a reliable and widely used disability scale [28].


## 2.3. DNA Extraction and Genotyping Assays

DNA was extracted from whole blood in EDTA, according to standard purification protocols by Qiagen, QIAamp DNA blood Mini Kit, and stored at −80°C until use. For the genotyping, we applied a real-time polymerase chain reaction (RT-PCR) technique, which discriminates alleles by detecting differences in the melting temperatures of the products (Tm). Differences in Tm are produced by the introduction of a GC-tail at the end of one of the two allele-specific primers [29], and measured by SYBR Green fluorescence. For the studied SNPs, the method was used for the first time. Prototypically designed primers and conditions can be seen in Table 1. Primers were designed using the DNAman version 4.02 software, tested for specificity with BLAST (http://blast.ncbi.nlm.nih.gov/), and synthesized by Metabion International AG, Germany. All samples were processed in duplicates, and genotyping of 10% random samples for each SNP was confirmed by sequencing (VBC-BIOTECH Service GmbH, Sequencing Unit, Vienna, Austria). Analyses were employed in the Stratagene Mx3000P  qPCR machine, using the Brilliant QPCR MasterMix by Stratagene, La Jolla, USA.Table 1
Allele-specific primers and real-time PCR conditions.
Allele-specific primersReal-time PCR conditionsIL4-589C>TSegment  1-Amplification (40 cycles)(i) Denaturation at 95°C  for 30′′ (ii) Annealing at 56°C  for 30′′ (iii) Extension at 72°C   for 20′′Segment 2-Qualitative data collection  (115 cycles):70–95°C for 18′′ (Specifically for TNF-α-308G>A: annealing at 61°C  for 25′′)FRW C primer  FRW T  primer5′-GCGGCGCGGCCCACTAAACTTGGGAGAACATTGAC-3′5′-AGTAAACTTGGGAGAACATTGTT-3′REV   primer5′-GGCAGAATAACAGGCAGAC-3′IL10-1082G>AFRW G  primer  FRW A  primer5′-GCGGCGCGGCGG-TTAGTAAGGCTTCTTTGGGTG -3′5′-TACTACTAAGGCTTCTTTGGGAA -3′REV  primer5′-CTGGATAGGAGGTCCCTTAC-3′TNF-α-308G>AFRW G  primer*5′-GCGGCGCGGCGG-CTGGCTGAACCCCGTCTC-3′FRW A  primer*5′-AGGCTGAACCCCGTGCT-3′REV  primer*5′-AAGGAAACAGACCACAGACCTG-3′IL6-174G>CFRW G  primer*5′-ATTGTGACGTCCTTTAGCATC-3′FRW C  primer*5′-GCGGGCGGGCCG-ATTGTGACGTCCTTTAGGTTG-3′REV  primer*5′-ATGACGACCTAAGCTGCAC-3′IL12B 1188A>CFRW A  primer*5′-TTTCAATGAGCATTTAGCAACT-3′FRW C  primer*5′-GCGGCGCGGCGG-TACAATGAGCATTTAGCATGG-3′REV  primer*5′-TAGGATCACAATGATATCTTTGC-3′*Primer designed on the complementary sequence. FRW: forward, REV: reverse.Underlined are sites of introduced mismatches. Bold are the polymorphic alleles. Italic is the intoduced GC-tail.


## 2.4. Statistical Analysis

A Kaplan-Mayer disease-free survival analysis was used to test for possible differences in the age of IS onset, depending on the carriage of specific inflammatory genotype. Statistical significance was expressed withP log ranks. Cox regression analyses were further conducted for each SNP to include possible known confounders (i.e., sex, hypertension, diabetes, atrial fibrillation, hyperlipidemia, smoking) in the overall effect. To assess the potential genetic contribution in the odds of having a bad functional outcome, a binary logistic regression analysis was applied after adjustments for age, sex, vascular risk factors, stroke severity on admission and TOAST categories. Data of the regressions are given as Odds Ratios (OR) with 95% confidence intervals (95% CI).


## 3. Results

Baseline characteristics and genotypes of the studied polymorphisms in our IS cohort are seen on Table2. All genotype frequencies were found in accordance to the Hardy-Weinberg equilibrium, that is, for TNF-α-308G>A P=.17, for IL6-174G>C P=.48, for IL12B 1188A>C P=.92, for IL4-589C>T P=.32, and for IL10-1082G>A P=.98.Table 2
Baseline characteristics and genotype frequencies of IS patients.
CharacteristicIS patients(n=145)Age, median (IQR)68 (58–76)Sex, females (%)50 (34.5)Arterial hypertension (%)104 (72)Diabetes mellitus (%)40 (28)Hypercholesterolemia (%)102 (70)Atrial fibrillation (%)31 (21)Ischemic heart disease (%)37 (26)Current smoking (%)52 (36)Stroke severity on admission (%)Mild (SSS = 45–58)69 (48)Moderate (SSS = 19–44)44 (30)Severe (SSS = 0–18)32 (22)TNF-α-308G>AGG (%)115 (79)GA (%)30 (21)IL6-174G>CGG (%)85 (59)GC (%)50 (34)CC (%)10 (7)IL12B 1188A>CAA (%)77 (53)AC (%)57 (39)CC (%)11 (8)IL4-589C>TCC (%)123 (84.8)CT (%)22 (15.2)IL10-1082G>AAA (%)47 (32.4)GA (%)71 (49)GG (%)27 (18.6)IQR: interquartile range, IS: ischemic stroke,SSS: scandinavian stroke scale.Figure1 shows the Kaplan-Mayer curves for the disease-free survival analysis depending on genotypes of each studied inflammatory SNP. As seen on the curves, carriers of the ancestral alleles did not significantly differ in the age of stroke onset compared to their homo- and heterozygous mutant counterparts. Estimates of median (standard error) age of IS onset for each inflammatory genotype, as well as the Kaplan-Mayer P log ranks can be seen on Table 3. A Cox regression analysis was further applied to correct the impact of studied genotypes on the age of disease onset, for other important confounders (i.e., sex, hypertension, diabetes, hyperlipidemia, atrial fibrillation, ischemic heart disease, and smoking).  ORs with 95% CI of the adjusted genotype effects confirmed a lack of association between inflammatory SNPs and disease-free survival (Table 3). Interestingly, in all regressions, the most powerful predictors of the premature age of IS onset were smoking and hyperlipidemia (both P<.001, data not shown).Table 3
Statistics of the disease-free survival analysis.
Disease-free survival analysisMedian (SE)KM log rankCox regression*POdds ratio (95% CI)TNF-α-308G>AGA65 (4.93).70ReferentGG68 (1.97)0.74 (0.49–1.12)IL6-174G>CGG65 (2.01).86ReferentGC/CC69 (1.66)0.70 (0.51–1.22)IL12B 1188A>CAA67 (2.00).62ReferentAC/CC70 (2.58)1.02 (0.72–1.44)IL4-589C>TCC67 (2.08).91ReferentCT68 (4.10)1.07 (068–1.70)IL10-1082G>AGA/AA68 (2.09).55ReferentGG65 (6.06)1.43 (0.92–2.22)SE: standard error, KM: Kaplan-Mayer, CI: confidence intervals.*Adjusted for sex, hypertension, diabetes, hyperlipidemia, atrial fibrillation, ischemic heart disease, and smoking.Kaplan-Mayer curves for the disease-free survival analysis, according to the studied inflammatory genotypes.
(a)(b)(c)(d)Because Kaplan-Mayer curves (Figure1) involving TNF-α-308G>A, IL4-589C>T and IL10-1082G>A presented differentiating slopes approximately before the age of 65, we reapplied the above analysis separately for this younger age-group (n=76). However, neither this subanalysis could point to significant differences in the age of IS onset between the different inflammatory genotypes. The subsequent Cox regression (OR (95% CI)) also showed no significant contribution of TNF-α-308GG (0.70 (0.37–1.35), IL4-589CT (0.53 (0.26–1.07)), or IL10-1082 GG (1.83 (0.97–3.47)) genotypes, after standard adjustments for sex and vascular risk factors.Table4 contains the genotypic distributions across categories of good and bad functional outcome, at 6 months after IS. Bad functional outcome included cases with BI<16, or death. Combinations of genotypes have been made so as to unite groups of “high” versus “low” cytokine producers. The binary logistic regression showed a statistical significant contribution of the TNF-α-308 GG ancestral genotype in the reduction of the odds for an adverse 6-month outcome (OR (95% CI) = 0.19 (0.04–0.86)), even after important corrections for age, sex, vascular risk factors, stroke severity on admission and TOAST categories. For the rest of the inflammatory SNPs, no similar association could be confirmed. As expected, stroke severity on admission was the most powerful predictor in the models (P<.001, data not shown).Table 4
Association of inflammatory genotypes with long-term functional outcome of an IS.
GenotypesLogistic regressionTNF-α-308G>APresence of GG6-month  outcomeAGGGOR*95% CIP(BI: 16–20) good (%)(BI: <16, or death) bad (%)15 (17)13 (25.5)73 (83)38 (74.5)Referent0.190.04–0.86.03IL6-174G>CPresence of GC/CCGGGC/CCOR*95% CIP(BI: 16–20) good (%) (BI: <16, or death) bad (%)54 (64.3)34 (62.8)30 (35.7)21 (38.2)Referent1.140.37–3.54.82IL12B 1188A>CPresence of ACAA/CCACOR*95% CIP(BI: 16–20) good (%) (BI: <16, or death) bad (%)48 (54.5)37 (72.5)40 (45.5)14 (27.5)Referent0.690.23–2.09.52IL4-589C>TPresence of CTCCCTOR*95% CIP(BI: 16–20) good (%) (BI: <16, or death) bad (%)71 (84.1)43 (84.3)14 (15.9)8 (15.7)Referent0.670.17–2.59.56IL10-1082G>APresence of GGGGAG/AAOR*95% CIP(BI: 16–20) good (%) (BI: <16, or death) bad (%)14 (15.9)12 (23.5)74 (84.1)39 (76.5)Referent2.650.57–12.40.22BI: barthel index, OR: odds ratio, CI: confidence intervals.*ORs adjusted for age, sex, hypertension, diabetes, hyperlipidemia, ischemic heart disease, smoking, stroke severity on admission and TOAST categories.


## 4. Discussion

In the last decade, experimental as well as clinical studies have recognized both pro and anti-inflammatory cytokines as key mediators of the low-grade aseptic inflammation, which precedes an ischemic cerebrovascular event and follows its pathophysiological course [1]. SNPs that alter the production rate of inflammatory cytokines secondary to a given trigger, have been previously related to incident IS [15]. The present study investigated the possible genetic contribution of functional polymorphisms of major inflammatory molecules (i.e., TNF-α-308G>A, IL6-174G>C, IL12B 1188A>C, IL4-589C>T and IL10-1082G>A) in the age of onset and 6-month outcome of an acute IS. Genotyping was based on a PCR-allele discrimantion technique without oligonucleotide probes [29], which yielded comparable allele frequencies to those previously reported using different methods    [30–34].Despite previous promising data suggesting a significant association of the age of onset of Alzheimer’s disease with genotypes of TNF-α-308G>A SNP [35], our results showed that the age of onset of ischemic cerebrovascular disease may not be predicted by inflammatory genotypes. Simple Kaplan-Mayer disease-free survival curves, as well as Cox regressions adjusted for sex and vascular risk factors, confirmed that IS is a complex, multifactorial clinical phenotype, which can manifest prematurely or delayed, irrespectively of the genetic inflammatory burden. Furthermore, it is possible that the gross effect of conventional vascular risk factors in the incidence of IS may not be easily overwhelmed. Under this rationale, it would be interesting to know whether the reported genotype frequencies differ from those of a healthy population. This investigation could be the aim of a future case-control association study.Although genome-wide association studies are reasonably more relevant to detect combinations of genetic traits in relation to a specific clinical phenotype over a large number of patients, they tend to miss important clinical aspects of the disease. This is why, smaller-scale SNP association studies of molecules which have some a priori evidence for a pathogenic role in the disease of interest, may still be useful in implying possible relations with meaningful clinical impact. Under this scope, we set to investigate whether our selected inflammatory functional SNPs could predict the long-term outcome of an IS. After applying adjusted analyses, we found a lack of association between IL6-174G>C, IL12B 1188A>C, IL4-589C>T and IL10-1082G>A and 6-month outcome after stroke. The relatively limited number of IS cases included, may partially explain the above lack of associations. However, we were able to identify a significant contribution of the ancestral TNF-α-308 GG genotype in about 80% reduced odds for having an adverse outcome (OR (95% CI) = 0.19 (0.04–0.86)). This long-term association of TNF-α-308 G-allele double carriage is in line with its described low TNF-secreting properties    [36]. High TNF-α levels at 3 months after an IS, have been previously found to relate with undesired functional dependency [37].To conclude, our results show that functional genotypes of important inflammatory cytokines cannot either delay or precipitate the age of IS onset, despite the widely accepted role of such molecules in the pathophysiology of the disease. We provide implications for a possible predictive effect of TNF-α-308 GG ancestral genotype into better clinical outcome 6 months after stroke. It is possible that the small size of our study may have not allowed for identification of other statistical significant associations. Therefore, further studies in larger IS cohorts, are needed to confirm our results.


## Conflict of Interests

The authors declare that there is no conflict of interests.



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