# ADe Novo Whole GCK Gene Deletion Not Detected by Gene Sequencing, in a Boy with Phenotypic GCK Insufficiency

Authors: N. H. Birkebæk; J. S. Sørensen; J. Vikre-Jørgensen; P. K. A. Jensen; O. Pedersen; T. Hansen
Journal: Case Reports in Genetics
 (2011)

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## Abstract

We report on a boy with diabetes mellitus and a phenotype indicatingglucokinase (GCK) insufficiency, but a normal GCK gene examination applying direct gene sequencing. The boy was referred for diabetes mellitus at 7.5 years old. His father, grandfather and great grandfather suffered type 2 DM. Several blood glucose profiles showed (BG) of 6.5–10 mmol/L L. After three years on neutral insulin Hagedorn (NPH) in a dose of 0.3 IU/kg/day haemoglobin A1c (HbA1c) was 6.8%. Treatment was changed to sulphonylurea 750 mg a day, and after 4 years HbA1c was 7%. At that time a multiplex ligation-dependent amplification gene dosage assay (MLPA) was done, revealing a whole GCK gene deletion. Medical treatment was ceased, and after one year HbA1c was 6.8%. This case underscores the importance of a MLPA examination if the phenotype of a patient is strongly indicative of GCK insufficiency and no mutation is identified using direct sequencing.


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## Body

## 1. Introduction

Monogenic diabetes results from a mutation in a single gene. Most cases are autosomal dominant inherited, but may be recessive inherited, mitochondrial inherited, or be due to ade novomutation [1]. Monogenic diabetes should be considered when diabetes is inherited through more than two generations. A common cause of monogenic diabetes, Maturity Onset Diabetes of the Young (MODY) is mutations in the glucokinase (GCK) gene (MODY2). MODY2 is characterized by moderately elevated fasting and postprandial blood glucose levels. Treatment is usually unnecessary [1]. Until recently, mutation screening has been restricted to denaturing high-performance liquid chromatography (dHPLC) or direct sequence analyses. However these methods do not detect large heterozygous deletion mutations.We report on a boy with diabetes mellitus and a phenotype indicatingGCK insufficiency, but a normal GCK gene examination applying direct gene sequencing.


## 2. Case Report

The boy was referred for diabetes mellitus (DM) at 7.5 year old, with two fasting blood glucoses (BG) of 7-8 mmol/L and a HbA1c of 6.4%. He was born at term with a birth weight of 2800 g and a birth length of 51 cm. He was slightly retarded. An MRI of the brain was normal apart from an arachnoideal cyst at cisterna ambiens. The parents were nonconsanguineous. The father, grandfather, two of the grandfather’s brothers, and the great grandfather were diagnosed with type 2 DM (Figure1). The grandfather died at 54 years old. The pedigree indicated that the patient might have monogenic diabetes. However, gene sequencing of all GCK exons, intron-exon boundaries, and the promoter did not reveal any mutations. After several BG profiles of 6.5–10 mmol/L, the boy was treated with NPH insulin 8 IE in the morning (0.3 IE insulin per kg body weight). After three years on NHP 8 IE once a day, HbA1c was 6.8%. Stimulated C-peptide was 842 pmol/L, and the boy was tested negative for GAD65 and IA2 autoantibodies. The treatment was changed to sulphonylurea 750 mg a day. After four years on sulphonylurea, HbA1c was 7.0%. At that time a multiplex ligation-dependent amplification dosage assay (MLPA) revealed a whole GCK gene deletion (Figure 2). The GCK gene deletion was not identified in the parents and a brother, indicating that the deletion was a de novo mutation. The sulphonylurea treatment was ceased. One year later, HbA1c was unchanged 6.8%. An array comparative genomic hybridization of the whole genome did not reveal other mutations, and only the GCK gene was deleted.Figure 1
Pedigree of the family of the proband. The proband is marked with a red square. Filled symbols indicate family members with diabetes. The carrier of theGCKdeletion mutation is marked with Del/N. Family members tested negative for the GCKdeletion are marked with N/N.Detection of a wholeGCK gene deletion (MODY2) by multiplex ligation-dependent amplification dosage assay (MLPA). Graphical representation of HNF4A(MODY1), HNF1A(MODY3), HNF1B(MODY5), GCK(MODY2), Chromosome X, and Y probes normalised to controls in the proband (a) and one of the examined family members (b). All GCK probes are expressed in half dosage in the proband indicating a total GCKdeletion.
(a)(b)


## 3. Discussion

MostGCK mutations are single nucleotide mutations, which can be detected by dHPLC or direct gene sequencing [2, 3]. GCK deletion mutations are very rare [4]. Until now a whole GCK deletion in nonsyndromic patients have only been reported one time [2]. In syndromic patients, whole GCKgene deletions have been reported in combination with multiple gene deletions [5, 6]. In our patient, the pedigree and the phenotype gave a strong suspicion of a GCK mutation, and a de novo mutation with a whole GCK gene deletion was detected by MLPA. The relative low birth weight can be explained by the mother not having the GCKmutation and the fetus having the GCKmutation, which indirectly decreases fetal insulin secretion and thereby fetal growth [7]. This case emphasizes the importance of gene dosage analysis by MLPA in patients suspected for a GCK mutation, and no mutation was identified applying direct sequencing.



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*Source: 768610-2011-10-20.xml*