# HLA-B*40 Allele Plays a Role in the Development of Acute Leukemia in Mexican Population: A Case-Control Study

Authors: Javier Fernández-Torres; Denhi Flores-Jiménez; Antonio Arroyo-Pérez; Julio Granados; Alberto López-Reyes
Journal: BioMed Research International
 (2013)

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## Abstract

Among oncohematological diseases, acute lymphoid leukemia (ALL) and acute myeloid leukemia (AML) are characterized by the uncontrolled production and accumulation of blasts that can lead to death. Although the physiopathology of these diseases is multifactorial, a genetic factor seems to be at play. Several studies worldwide have shown association of ALL and AML with several alleles of the major histocompatibility complex (MHC).Objective. To determine gene frequencies of HLA-B alleles in Mexicans (individuals with Native American genetic background admixed with European descent) with ALL and AML. Methods. We compared the HLA-B alleles in 213 patients with ALL and 85 patients with AML to those present in 731 umbilical cord blood (UCB) samples as a control group; this was done by means of the PCR-SSP technique. Results. We found an increased frequency of the HLA-B*40 allele in ALL patients as compared to the control group (14.5% versus 9.84%, P=0.003, OR = 1.67); this was particularly evident in a subgroup of young (less than 18 years old) ALL patients (P=0.002, OR = 1.76); likewise, a decreased frequency of HLA-B*40 allele in AML patients was observed as compared to the control group (4.70% versus 9.84%, P=0.02, OR = 0.42). Conclusions. These results might suggest opposing effects of the HLA-B*40 in the genetic susceptibility to develop ALL or AML and offer the possibility to study further the molecular mechanisms of cell differentiation within the bone marrow lineage.


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## Body

## 1. Introduction

Acute leukemia constitutes a group of oncohematologic diseases with a multifactorial origin [1, 2]; acute lymphoid leukemia (ALL) and acute myeloid leukemia (AML) are characterized by the excessive proliferation of immature hematopoietic cells (blasts) in the bone marrow. Progressive accumulation of these cells in the peripheral blood leads to the development of fatal infections, hemorrhages, and in many cases to death [3–5].Epidemiological studies indicate that ALL affects mainly children, whereas AML affects young adults and its incidence increases with age [5, 6]. As is the case of other Hispanic populations, ALL is the third leading cause of death in the pediatric Mexican population. Annually two to three cases per 100,000 children are reported. AML, on the other hand, is more often found in older individuals with a mean age of diagnosis of 70 years and 1 case per 100,000 adults [5, 7–10]. These high incidences can be due to the interaction of environmental, genetic, and immunologic factors, through unknown mechanisms; it has also been suggested that even recurring infections by diverse viral agents potentiate their development [11, 12].The MHC is the most polymorphic genetic system known in humans; it is divided into class I (HLA-A, HLA-B, and HLA-C) and class II (HLA-DRB1 and HLA-DQB1) molecules, whose function is to encode membrane glycoproteins that act as mediators in the presentation of antigenic peptides to lymphocytes T CD8+ and T CD4+, respectively, thereby triggering the immune response [13].From the genetic point of view, polymorphisms of the MHC have been the object of several studies because of their association with diverse pathologies as well as their relationship with genetic population structure and organ and tissue transplantation. These polymorphisms are due to mutations at the DNA level promoted by selective pressure, which are translated into changes in amino acid residues of the antigen-presenting molecules [13]. It has been observed that the HLA-B locus has the highest number of allele variants [14] because of its ability to present peptides derived from intracellular pathogens, particularly, and therefore it has become a relevant target of natural selection along human history [15].The first studies on the association between hematological neoplasms and the MHC were performed in mice infected with lymphoma-inducing viruses; It was observed that the strains susceptible to leukaemogenesis possessed the H-2k/k haplotype, whereas the H-2b/b haplotype conferred resistance [16, 17]. These results suggest the possibility of associating human leukemia with HLA [18]. When the first studies on the association between HLA and human leukemia were made, the increase in the frequency of HLA-A2 antigen was demonstrated [19, 20]; however, the advent of new molecular techniques has allowed the identification of new allele variants of HLA class I and class II [21–24].Given the relatively high incidence of acute leukemia in the Mexican population, the aim of this work was to analyze gene frequencies of HLA-B alleles in Mexican patients with ALL and AML.


## 2. Patients and Methods

### 2.1. Patients

During the 2004–2010 time period, we received 213 clinical histories of patients with ALL and 85 clinical histories with AML diagnosed, from different health care centers of Mexico, that requested HLA-compatible UCB units from the National Center of Blood Transfusion for the use in bone marrow transplantation. The patients were individuals with Native American genetic background admixed with European descent; both genders were equally represented and had no familiar kinship. To confirm diagnosis of ALL or AML, bone marrow aspirates would need to show more than 20% blast cells. As a prerequisite for the search, it was required that the request would include the HLA of the patient, preferentially typed by molecular biology.


### 2.2. Control Group

The control group was represented by 731 UCB samples which were part of the National Donor Program in Maternity Services of different states of Mexico. These units were collected with the written informed consent of the maternal donors and, in order to be included, parents were asked about family history of genetical or neoplastic disorders. All UCB samples were processed at the same blood bank and were analyzed before and after cryopreservation based on international standards; in addition, to corroborate the results obtained, repetition studies were performed prior to the transplantations. On the other hand, follow-up was carried out by means of telephone interviews with all mothers who donated their child’s umbilical cord to corroborate the health status of the infants; none of the UCB units presented problems prior to the transplantation. The range of time from birth of UCB donors to the transplant was at least two years in the majority of cases.


### 2.3. Obtaining Genomic DNA from the Control Group

From the 200μL of fresh blood collected, we obtained 100 ng/μL of DNA by means of a QIAamp DNA Blood Mini Kit purchased from QIAGEN, following the manufacturer’s instructions.


### 2.4. DNA Amplification of the Control Group

DNA amplification to genotype the HLA-Blocus was carried out with the A/B/DR/DQ SSP Unitray kit purchased from Invitrogen; this was done by means of the polymerase chain reaction-single specific primer (PCR-SSP) technique. PCR amplifications were performed in 25 μL reaction volumes containing 100 ng genomic DNA, 50 mM Tris-HCl, 2.5 mM MgCl2, 20 mM each deoxynucleotide triphosphate, 10 pmol each primer, and 1 U of Taq DNA polymerase. Thermocycling parameters were as follows: denaturation at 94°C for 5 min and 30 cycles of 94°C for 30 s, 60°C for 45 s, and 72°C for 45 s, with a final extension at 72°C for 5 min. Amplified products were resolved using agarose (Invitrogen Corporation, Carlsbad, CA, USA) gel electrophoresis. Analysis for band interpretation was performed with UniMatch Plus versions 3.2 and 4.0 software.


### 2.5. Statistical Analysis

Gene frequencies of the HLA-B alleles from both study groups were calculated by direct count. For comparison between the groups, we usedχ2 analysis by using 2×2 contingency tables and Fisher’s exact test when appropriate; P values less than 0.05 were considered statistically significant. For estimating risks, we employed odds ratio (OR) with a 95% confidence interval (95% CI). These calculations were performed by using the EpiInfo statistical program (version 6, Centers for Disease Control and Prevention, Atlanta, GA, USA).


## 2.1. Patients

During the 2004–2010 time period, we received 213 clinical histories of patients with ALL and 85 clinical histories with AML diagnosed, from different health care centers of Mexico, that requested HLA-compatible UCB units from the National Center of Blood Transfusion for the use in bone marrow transplantation. The patients were individuals with Native American genetic background admixed with European descent; both genders were equally represented and had no familiar kinship. To confirm diagnosis of ALL or AML, bone marrow aspirates would need to show more than 20% blast cells. As a prerequisite for the search, it was required that the request would include the HLA of the patient, preferentially typed by molecular biology.


## 2.2. Control Group

The control group was represented by 731 UCB samples which were part of the National Donor Program in Maternity Services of different states of Mexico. These units were collected with the written informed consent of the maternal donors and, in order to be included, parents were asked about family history of genetical or neoplastic disorders. All UCB samples were processed at the same blood bank and were analyzed before and after cryopreservation based on international standards; in addition, to corroborate the results obtained, repetition studies were performed prior to the transplantations. On the other hand, follow-up was carried out by means of telephone interviews with all mothers who donated their child’s umbilical cord to corroborate the health status of the infants; none of the UCB units presented problems prior to the transplantation. The range of time from birth of UCB donors to the transplant was at least two years in the majority of cases.


## 2.3. Obtaining Genomic DNA from the Control Group

From the 200μL of fresh blood collected, we obtained 100 ng/μL of DNA by means of a QIAamp DNA Blood Mini Kit purchased from QIAGEN, following the manufacturer’s instructions.


## 2.4. DNA Amplification of the Control Group

DNA amplification to genotype the HLA-Blocus was carried out with the A/B/DR/DQ SSP Unitray kit purchased from Invitrogen; this was done by means of the polymerase chain reaction-single specific primer (PCR-SSP) technique. PCR amplifications were performed in 25 μL reaction volumes containing 100 ng genomic DNA, 50 mM Tris-HCl, 2.5 mM MgCl2, 20 mM each deoxynucleotide triphosphate, 10 pmol each primer, and 1 U of Taq DNA polymerase. Thermocycling parameters were as follows: denaturation at 94°C for 5 min and 30 cycles of 94°C for 30 s, 60°C for 45 s, and 72°C for 45 s, with a final extension at 72°C for 5 min. Amplified products were resolved using agarose (Invitrogen Corporation, Carlsbad, CA, USA) gel electrophoresis. Analysis for band interpretation was performed with UniMatch Plus versions 3.2 and 4.0 software.


## 2.5. Statistical Analysis

Gene frequencies of the HLA-B alleles from both study groups were calculated by direct count. For comparison between the groups, we usedχ2 analysis by using 2×2 contingency tables and Fisher’s exact test when appropriate; P values less than 0.05 were considered statistically significant. For estimating risks, we employed odds ratio (OR) with a 95% confidence interval (95% CI). These calculations were performed by using the EpiInfo statistical program (version 6, Centers for Disease Control and Prevention, Atlanta, GA, USA).


## 3. Results

We studied two separate groups, one comprising 213 patients suffering ALL (59% male and 40.4% female, median age 10 years) and 85 patients affected by AML (58.8% male and 41.2% female, median age 12 years); we also studied a group of 731 UCB units as controls. Table1 illustrates the main demographic characteristics of patients and controls.Table 1
Demographic characteristics of the study groups.
Characteristic
Patients ALL
Patients AML
Controls (UCB)
N
=
213
N
=
85
N
=
731
Male
127 (59.6%)
50 (58.8%)
365 (49.9%)
Female
86 (40.4%)
35 (41.2%)
366 (50.1%)
Median age (years)
10
12
NB
District of state of origin
DF = 111 (52.1%)
DF = 46 (54.1%)
Representativite of all Mexican geographical regions.
Nuevo León = 53 (24.8%)
Nuevo León = 17 (20.0%)
Puebla = 22 (10.3%)
Jalisco = 11 (12.9%)
Jalisco = 12 (5.6%)
Puebla = 8 (9.4%)
Coahuila = 5 (2.3%)
Others = 3 (3.5%)
Others = 10 (4.7%)
ALL: acute lymphoid leukemia; AML: acute myeloid leukemia; UCB: umbilical cord blood; DF: federal district; NB: newborn.We identified 24 alleles of the HLA-Blocus in the study groups. Table 2 shows the gene frequencies of the HLA-B locus in patients with ALL as compared to controls. As it is readily seen, patients with ALL show increased gene frequency of the HLA-B*40 allele as compared to the control group (14.5% versus 9.84%,  P=0.003, OR = 1.67, CI 95% = 1.16–2.40); whereas the gene frequency of HLA-B*39 allele was lower when compared with controls (12.2% versus 17.3%, P=0.004, OR = 0.61, CI 95% = 0.42–0.87).Table 2
Gene frequencies of HLA-B alleles in patients with ALL compared with umbilical cord blood samples, as a control group.
B* allele
PatientsN=213
ControlsN=731
P
OR
95% CI
n
g. f.
n
g. f.
07
16
0.0375
60
0.0410
NS
08
10
0.0234
40
0.0273
NS
13
4
0.0093
14
0.0095
NS
14
15
0.0352
55
0.0376
NS
15
35
0.0821
135
0.0923
NS
18
11
0.0258
42
0.0287
NS
27
8
0.0187
19
0.0129
NS
35
73
0.1713
296
0.2024
NS
38
10
0.0234
15
0.0102
NS
39
52
0.1220
254
0.1737
0.004
0.61
0.42–0.87
40
62
0.1455
144
0.0984
0.003
1.67
1.16–2.40
41
9
0.0211
13
0.0088
NS
42
1
0.0023
9
0.0061
NS
44
25
0.0586
75
0.0512
NS
45
10
0.0234
18
0.0123
NS
48
15
0.0352
57
0.0389
NS
49
13
0.0305
29
0.0198
NS
51
23
0.0539
86
0.0588
NS
52
13
0.0305
40
0.0273
NS
53
5
0.0117
17
0.0116
NS
55
3
0.0070
2
0.0013
NS
56
1
0.0023
2
0.0013
NS
57
3
0.0070
15
0.0102
NS
58
4
0.0093
6
0.0041
NS
ALL: acute lymphoid leukemia; g. f.: gene frequency; OR: odds ratio; CI: confidence interval; NS: not significant.On the other hand, Table3 depicts the gene frequencies of the HLA-B locus in patients with AML. Patients showed significantly increased gene frequency of HLA-B*27 allele as compared with controls (5.29% versus 1.29%, P=0.0001, OR = 4.44, CI 95% = 1.79–10.8); in contrast, in gene frequencies of HLA-B*15 and HLA-B*40, alleles were lower when compared to the control group (1.17% versus 9.23%, P=0.0001, OR = 0.11, CI 95% = 0.02–0.45; 4.7% versus 9.84%, P=0.02, OR = 0.42, CI 95% = 0.18–0.93, resp.).Table 3
Gene frequencies of HLA-B alleles in patients with AML compared with umbilical cord blood samples, as a control group.
B* allele
PatientsN=85
ControlsN=731
P
OR
95% CI
n
g. f.
n
g. f.
07
11
0.0647
60
0.0410
NS
08
5
0.0294
40
0.0273
NS
13
3
0.0176
14
0.0095
NS
14
7
0.0411
55
0.0376
NS
15
2
0.0117
135
0.0923
0.0001
0.11
0.02–0.45
18
6
0.0352
42
0.0287
NS
27
9
0.0529
19
0.0129
0.0001
4.44
1.79–10.8
35
30
0.1764
296
0.2024
NS
37
3
0.0176
6
0.0041
NS
38
2
0.0117
15
0.0102
NS
39
23
0.1352
254
0.1737
NS
40
8
0.0470
144
0.0984
0.02
0.42
0.18–0.93
41
3
0.0176
13
0.0088
NS
44
11
0.0647
75
0.0512
NS
45
3
0.0176
18
0.0123
NS
48
5
0.0294
57
0.0389
NS
49
5
0.0294
29
0.0198
NS
50
2
0.0117
11
0.0075
NS
51
16
0.0941
86
0.0588
NS
52
7
0.0411
40
0.0273
NS
53
3
0.0176
17
0.0116
NS
55
1
0.0058
2
0.0013
NS
57
3
0.0176
15
0.0102
NS
58
2
0.0117
6
0.0041
NS
AML: acute myeloid leukemia; g. f.: gene frequency; OR: odds ratio; CI: confidence interval; NS: not significant.Table4 shows gene frequencies of HLA-B alleles in ALL and AML patients subdivided into groups of several ages; it can be seen that the role of HLA-B*40 is more relevant in patients with less than 18 years old, but it has no influence beyond that age. Additionally, the role of HLA-B*27 already described in AML is relevant regardless age.Table 4
Subgroups based on age of patients with ALL and AML, compared with umbilical cord blood samples as a control group.
Allele
ALL patients
Controls,N=731
P
OR
95% CI
n
g. f.
n
g. f.
N
=
186, ≤18 years old
B*39
47
0.1263
254
0.1737
0.01
0.63
0.43–0.93
B*40
56
0.1505
144
0.0984
0.002
1.76
1.20–2.56
N
=
27, >18 years old
B*39
5
0.0925
254
0.1737
NS
B*40
4
0.0740
144
0.0984
NS
Allele
AML patients
Controls,N=731
P
OR
95% CI
n
g. f.
n
g. f.
N
=
52, ≤18 years old
B*15
1
0.0096
135
0.0923
0.002
0.09
0.0–0.59
B*27
5
0.0480
19
0.0129
0.004
3.99
1.24–11.9
B*40
5
0.0480
144
0.0984
NS
N
=
28, >18–59 years old
B*15
0
—
135
0.0923
NS
B*27
3
0.0535
19
0.0129
0.01
4.5
1.0–17.5
B*40
3
0.0535
144
0.0984
NS
N
=
5, >59 years old
B*15
1
0.1000
135
0.0923
NS
B*27
1
0.1000
19
0.0129
0.01
9.37
0.18–99.9
B*40
0
—
144
0.0984
NS
ALL: acute lymphoid leukemia; AML: acute myeloid leukemia; g. f.: gene frequency; OR: odds ratio; CI: confidence interval; NS: not significant.


## 4. Discussion

The major finding of this study is that the HLA-B*40 allele distinguishes genetic susceptibility of ALL from AML in the Mexican population since it is increased in the former but not in the latter. Part of this finding was already described by Cameron et al. who found association of HLA-B40 antigen in children from Trinidad with ALL [25]. Likewise, Klitz et al. found that HLA-B*40 allele is overrepresented in pediatric patients with ALL [26].Moreover, Barion et al., who also studied genetic polymorphic variants of HLA-Blocus in patients from Brazil, found association of HLA-B*07 allele with AML but not with ALL [27]; this would suggest that Mexicans and Brazilians have not only differences in genetic population structure but also distinct triggering factors to the development of acute leukemia. [28].In this study, the HLA-B*39 allele was found to be significantly decreased in ALL, suggesting a protective role for this allele; nevertheless, in the study from Klitz et al., he found this allele to be associated with an increased risk to develop ALL; it would be important to study high resolution subtypes of HLA-B*39 to better define the role of this allele in the development of ALL. Finally, in patients with AML from Venezuela, Villalobos et al. found association with the HLA-A*02/-B*40/-C*03 haplotype [29].Another relevant allele in the present study was HLA-B*15, that is significantly decreased in AML whereas HLA-B*27 allele was increased (Table3). The study from Klitz et al., reports association of HLA-B*15 only.The data presented in this study might suggest that HLA allele participate in the genetic susceptibility to develop acute leukemia either directly or as genetic markers of neighboringloci in linkage disequilibrium with MHC genes [30, 31]. The dual role of the HLA-B*40 allele would suggest that the HLA-B molecules have a special capacity to affect the activity of some immune responses particularly those related to lymphoproliferative neoplasia triggered by intracellular pathogens [3].Biomarkers are objectively measurable parameters, characterized as indicators of biological processes (normal or pathological) or of responses in pharmacological studies [32]. The dual effect expressed by certain biomarkers in one and the same disease can be the result of certain molecules acting at an intermediate point in the balance between inflammatory and immunomodulating processes in order to maintain homeostasis. Although, this mechanism is not clear, one way to explain it is that each allele, in particular, depicts a different affinity in binding endogenous peptides at the binding pockets of the amino acid residues, embedded in the antigen binding groove and in their further recognition [33, 34].This affinity is strongly linked with the biophysical features of alleles, which vary minimally among them but are pivotal for their association with determined diseases. The change in amino acids position shown in AML such as B*27 can alter the presentation of certain antigens related to the development of some diseases, inducing a stimulus that differs from lymphocytes T [35]. Yet, an immune response can also occur if these antigens are processed within leukemic cells and are presented through HLA molecules [24]. In the present study, molecules B*27 and B*40 showed distinct patterns of genetic associations for the two types of leukemia. This could explain why there was a significant association positive of HLA-B*27 allele in AML patients but no association positive of HLA-B*40 allele and AML; this findings might also relate to the role of receptors in natural killer cells whose ligands are part of class I molecules.In conclusion, we determined that, just like in other regions of the world, certain HLA-B alleles are associated with acute leukemia in Mexican population. Even though the results of the present study are heterogeneous, the possible mechanism may be that binding of peptides in these HLA molecules leads to an immune response, resulting in that HLA-B*40 allele seems to be a susceptibility biomarker in the development of ALL and probably a protecting biomarker in the development of AML. This might suggest that there are different genetic and immunological mechanisms that contribute to the pathogenesis of this group of diseases and offer the possibility to study further the molecular mechanisms of cell differentiation within the bone marrow lineage.



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