# Autologous Peripheral Blood Mononuclear Cell Recognition of Autologous Proliferating Tumor Cells in the Context of a Patient-Specific Vaccine Trial

Authors: A. N. Cornforth; G. Lee; R. O. Dillman
Journal: Journal of Biomedicine and Biotechnology
 (2011)

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## Abstract

Metastatic melanoma patients who were treated with patient-specific vaccines consisting of dendritic cells loaded with autologous tumor cells had a 5-year survival of over 50%. Enzyme-linked immunospot (ELISPOT) has been used to detect antigen reactive T cells as a means of determining immune response. We wished to determine whether IFN-gamma secretion in an ELISPOT assay was prognostic or predictive for survival following treatment. Peripheral blood mononuclear cells (PBMCs) collected at weeks 0 and 4 were evaluated by ELISPOT assay for response to autologous tumor cells. Overall, there was slight increase in the number of tumor reactive lymphocytes from week 0 to week 4. Using >5 spots/100 K PBMC as the cutoff, a log-rank analysis revealed only a slight statistical significance in overall survival for patients who lacked tumor reactive PBMCs at week 4. The sensitivity of ELISPOT in the context of patient-specific cellular vaccines is unclear.


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## Body

## 1. Introduction

Metastatic melanoma is generally considered to be incurable.   Immunotherapy is a promising alternative treatment to chemotherapy, but challenges remain in determining response to therapy.  Clinical trials that use adoptive immunotherapy regimens need surrogate markers to measure responsiveness.  Currently, measuring changes in the level of serum cytokines by the enzyme-linked immunosorbant assay (ELISA) does not measure specific antigen responses.  A novel-cell-based immune monitoring assay like the enzyme-linked immunosorbant spot (ELISPOT) assay may be a more precise and quantifiable measure of immune response.Attempts to measure changes in serum cytokines involved in immune response (i.e., IL-10 and IL-12) by ELISA yielded no detectable levels in patients treated with the dendritic cell-based vaccine (unpublished observations).  In light of this, we chose to use the ELISPOT assay because it is able to measure antigen-specific responses in very small subsets of effector cell populations.  Such assays have been touted as a measure of whether a vaccine is enhancing immunity and as possible prognostic and predictive markers for melanoma patients receiving cancer vaccines made up of melanoma-specific peptides such as MART-1, gp100 and tyrosinase [1].  Cytokines that are secreted by immune cells in response to antigenic stimulation are rapidly captured by antibodies before they are diluted in the supernatant, captured by receptors of other cells, or degraded.  The colored spot end product typically represents an individual cytokine-producing cell that can be counted.  This allows ELISPOT assays to detect immune reactive cells that may be present at a frequency of less than 1/100,000 peripheral blood mononuclear cells.  ELISPOT has proved to be a reliable assay for lymphocyte recognition of peptide antigens based on the secretion of cytokines such as interferon gamma.We recently observed some remarkably long periods of progression-free survival and an encouraging 5-year survival rate of 50%, in patients with metastatic melanoma who were treated with patient-specific vaccines consisting of autologous dendritic cells loaded with interferon-gamma-treated and irradiated autologous tumor cells that had been proliferating in culture [2].  The vaccinations were given once a week for three weeks and once a month for five months.  The cell-based vaccine was administered in granulocyte macrophage-colony stimulating factor (GM-CSF) and injected subcutaneously.In this series of experiments, we used an ELISPOT assay as a metric for postvaccination immune augmentation.  The sensitivity of such assays in the context of our clinical trial is unclear since we were immunizing with antigens derived from tumor cells without awareness of which tumor-associated antigens might be most important in the immune response.  In this case, we could not use an ELISPOT tetramer assay which employs the use of specific peptide to detect antigen specific T cells because we were not focusing on a single specific antigen [3].   We therefore had to rely on the release of gamma interferon from a population of autologous lymphocytes based on their exposure to cryopreserved autologous tumor cells that had been proliferating in vitro.  We hypothesized that these cells were the best representatives for monitoring immune response for each patient since they represent the patient’s own tumor cells and subsequently may contain all of the available tumor associated antigens.


## 2. Materials and Methods

### 2.1. Patients

Melanoma patients with recurrent or metastatic disease were enrolled in a phase I/II clinical trial [2].  All patients had to be off any immunosuppressive therapy for at least 4 weeks and meet ECOG (Eastern Cooperative Oncology Group) performance levels of 0–2 at the time of initial treatment.  At the beginning of treatment, patients were tested for anergy to common recall antigens using available tests for Candida, trichophyton, and mumps but anergic patients were not denied treatment.  Those patients with brain metastases not currently receiving pharmacologic doses of corticosteroids with therapy controlled tumors were eligible for enrollment. A total of 54 patients were clinically evaluable but only 42 were included in this study.


### 2.2. Autologous Dendritic Cell Generation

Dendritic cells (DCs) were generated by plastic adherence method as previously described [4, 5].  Briefly, peripheral blood mononuclear cells were isolated by ficoll-hypaque (GE Healthcare, Buckinghamshire, United Kingdom) density gradient separation from apheresis collections.  The adherent populations were then incubated in AIM-V supplemented with 1000 IU/mL each of IL-4 (CellGenix, Freiburg, Germany) and GM-CSF (Invitrogen, Grand Island, NY) for 6 days prior to loading with autologous tumor cells.


### 2.3. Autologous Tumor Cell Line Generation

Pure melanoma tumor cell lines (defined as containing less than 5% fibroblasts), generated using techniques previously described [6–8], were incubated with 1000 IU/mL of IFN-γ (InterMune, Brisbane, CA) for 72 hours, irradiated with 100 Gy from a cesium source, and cryopreserved [9].  The tumor cells were recovered from cryopreservation, washed 3x with PBS, and then added to the in vitro cultivated DCs and incubated for ~24 hours. The antigen loaded DC were harvested by gentle scraping with a rubber policeman and cryopreserved at equal amounts in 9–11 aliquots.


### 2.4. Treatment Regimen

Aliquots of dendritic cells loaded with tumor cells were thawed in a 37°C water bath, washed 2x with AIM-V, combined with 500 ug/mL GM-CSF in saline and subcutaneously injected at weeks 1, 2, 3, 8, 12, 16, 20, and 24.Peripheral blood mononuclear cells (PBMCs) were obtained from peripheral blood samples at weeks 0 and 4 and were cryopreserved after separation of red blood cells by ficoll-hypaque density centrifugation.


### 2.5. IFN-γ Enzyme-Linked Immunospot (ELISPOT) Assay

Using BD ELISPOT Human IFN-γ ELISPOT Kit (BD Pharmingen, San Diego, Calif), thawed peripheral blood mononuclear cells (PBMCs) were rested for 24 hours and then cultured in four replicates at 2.0 × 105 viable cells with or without 4.0 × 105 viable autologous tumor cells per well in AIM-V in nitrocellulose backed 96 well plates.  The PBMC : ATC ratio and incubation time were chosen based on work by Malyguine  et al. [10].  Controls consisted of PBMCs stimulated with a combined cocktail of 3000 IU/mL IL-2, 2 μg/mL PHA, and 5 μg/mL OKT3 as a positive control, PBMCs or tumor cells only and AIM-V medium only as background and negative controls, respectively. After 48 hour incubation, plates were washed and stained as per manufacturer’s instructions.  Briefly, plates were washed twice with 200 μL/well deionized water and then three times with 200 μL/well Wash Buffer (provided by kit).  100 μL/well of 1 μg/mL mouse antihuman IFN-γ-biotinylated mAb (provided by kit) in assay diluent was added and the plates were incubated for 2 hours at room temperature.  The plates were then rinsed, incubated with streptavidin-HRP solution for 1 hour and developed with aminoethylcarbazole (AEC) peroxidase substrate solution provided with the kits. The plates were then counted on an ImmunoSpot instrument (Cellular Technology Ltd. Cleveland, Ohio).


### 2.6. Statistical Analysis

Significant differences were defined byP-value ≤.05 using Student’s t-test of two-tailed, two samples of equal variance.  Log-rank calculations were used to determine whether there was a significant difference in survival curves.  Progression-free and overall survival times were determined by time in months from first injection to last followup or patient expiration.


## 2.1. Patients

Melanoma patients with recurrent or metastatic disease were enrolled in a phase I/II clinical trial [2].  All patients had to be off any immunosuppressive therapy for at least 4 weeks and meet ECOG (Eastern Cooperative Oncology Group) performance levels of 0–2 at the time of initial treatment.  At the beginning of treatment, patients were tested for anergy to common recall antigens using available tests for Candida, trichophyton, and mumps but anergic patients were not denied treatment.  Those patients with brain metastases not currently receiving pharmacologic doses of corticosteroids with therapy controlled tumors were eligible for enrollment. A total of 54 patients were clinically evaluable but only 42 were included in this study.


## 2.2. Autologous Dendritic Cell Generation

Dendritic cells (DCs) were generated by plastic adherence method as previously described [4, 5].  Briefly, peripheral blood mononuclear cells were isolated by ficoll-hypaque (GE Healthcare, Buckinghamshire, United Kingdom) density gradient separation from apheresis collections.  The adherent populations were then incubated in AIM-V supplemented with 1000 IU/mL each of IL-4 (CellGenix, Freiburg, Germany) and GM-CSF (Invitrogen, Grand Island, NY) for 6 days prior to loading with autologous tumor cells.


## 2.3. Autologous Tumor Cell Line Generation

Pure melanoma tumor cell lines (defined as containing less than 5% fibroblasts), generated using techniques previously described [6–8], were incubated with 1000 IU/mL of IFN-γ (InterMune, Brisbane, CA) for 72 hours, irradiated with 100 Gy from a cesium source, and cryopreserved [9].  The tumor cells were recovered from cryopreservation, washed 3x with PBS, and then added to the in vitro cultivated DCs and incubated for ~24 hours. The antigen loaded DC were harvested by gentle scraping with a rubber policeman and cryopreserved at equal amounts in 9–11 aliquots.


## 2.4. Treatment Regimen

Aliquots of dendritic cells loaded with tumor cells were thawed in a 37°C water bath, washed 2x with AIM-V, combined with 500 ug/mL GM-CSF in saline and subcutaneously injected at weeks 1, 2, 3, 8, 12, 16, 20, and 24.Peripheral blood mononuclear cells (PBMCs) were obtained from peripheral blood samples at weeks 0 and 4 and were cryopreserved after separation of red blood cells by ficoll-hypaque density centrifugation.


## 2.5. IFN-γ Enzyme-Linked Immunospot (ELISPOT) Assay

Using BD ELISPOT Human IFN-γ ELISPOT Kit (BD Pharmingen, San Diego, Calif), thawed peripheral blood mononuclear cells (PBMCs) were rested for 24 hours and then cultured in four replicates at 2.0 × 105 viable cells with or without 4.0 × 105 viable autologous tumor cells per well in AIM-V in nitrocellulose backed 96 well plates.  The PBMC : ATC ratio and incubation time were chosen based on work by Malyguine  et al. [10].  Controls consisted of PBMCs stimulated with a combined cocktail of 3000 IU/mL IL-2, 2 μg/mL PHA, and 5 μg/mL OKT3 as a positive control, PBMCs or tumor cells only and AIM-V medium only as background and negative controls, respectively. After 48 hour incubation, plates were washed and stained as per manufacturer’s instructions.  Briefly, plates were washed twice with 200 μL/well deionized water and then three times with 200 μL/well Wash Buffer (provided by kit).  100 μL/well of 1 μg/mL mouse antihuman IFN-γ-biotinylated mAb (provided by kit) in assay diluent was added and the plates were incubated for 2 hours at room temperature.  The plates were then rinsed, incubated with streptavidin-HRP solution for 1 hour and developed with aminoethylcarbazole (AEC) peroxidase substrate solution provided with the kits. The plates were then counted on an ImmunoSpot instrument (Cellular Technology Ltd. Cleveland, Ohio).


## 2.6. Statistical Analysis

Significant differences were defined byP-value ≤.05 using Student’s t-test of two-tailed, two samples of equal variance.  Log-rank calculations were used to determine whether there was a significant difference in survival curves.  Progression-free and overall survival times were determined by time in months from first injection to last followup or patient expiration.


## 3. Results

The detection of antigen-specific peripheral blood T lymphocytes was determined by IFN-γ Enzyme-linked Immunospot (ELISPOT) assay using autologous tumor cells as the antigen source.  Controls consisted of PBMC only (unstimulated), PBMCs exposed to a cytokine cocktail to induce the expression of IFN-γ (nonspecific stimulation), tumor cells only or media only (Figure 1).  Neither the tumor cell only nor media controls resulted in any spotting activity in all wells examined (data not shown).   The levels of ELISPOT spotting were adjusted for nonspecific (unstimulated) IFN-γ secreting lymphocytes and the results are shown in Figure 2.Figure 1
Peripheral blood lymphocytes were placed in the wells of ELISPOT plates in quadruplicate under three separate conditions:  unstimulated (−Stm), stimulated with 3000 IU/mL IL-2, 2μg/mL PHA, and 5 μg/mL OKT3 (+Stm), or combined with autologous tumor cells at a ratio of 1 : 2 (+ATC).  After 48 hours, IFN-γ secretion was determined as per manufacturer’s instructions. Numbers indicate spots counted by automated counter.Figure 2
Results of induction of IFN-γ secreting T lymphocytes detected by ELISPOT in response to autologous tumors cells after DC-based immunotherapy for melanoma.  Peripheral blood lymphocytes collected (PBMC) at week 0 (open bars) and week 4 (filled bars) were coincubated with purified autologous tumor cells at a ratio of 1 : 2, respectively, and incubated for 48 hours.  Data shown is sorted by average number of spots/100 K PMBC ± SD.  Dashed line approximates the 5 spots/100 K PBMC threshold.Out of 54 patients treated on the vaccine study, 42 were evaluable at weeks 0 and 4 for the ELISPOT testing.  Although there was no significant change in the average number of tumor reactive PBMCs by week 4, there was trend toward slightly higher frequencies (week 0: 27.1 ± 6.9 spots/100 K and week 4: 30.9 ± 7.4 spots/100 K,P=.708).  Only 7/42 (16.6%) demonstrated a significant increase (P≤.05) in tumor reactive lymphocytes at week 4 versus week 0.  Additionally, 4/42 (9.5%) demonstrated a significant decrease in tumor reactive lymphocytes at week 4 versus week 0 (Table 1).   No correlations could be made with progression-free or overall survival in either group with significant changes in the number of spots between week 0 and week 4 either increasing or decreasing (data not shown).Table 1
Significant changes in tumor reactive T cells as measured by ELISPOT in patients receiving DC-based immunotherapy for metastatic melanoma.
Change in relative number of spotsWeek 4 versus week 0  (N=42)IncreaseP≤.057 (16.6%)DecreaseP≤.054 (9.5%)No changeP≥.0531 (73.8%)Moodie et al. reported that an acceptable ELISPOT signal-to-noise ratio of 2 : 1 to 3 : 1 results in a detection limit of 4 to 6 spots/1 × 105 PBMC, respectively, for determining response to the applied antigen  [11].  We applied this methodology to our assay and adjusted for any background by subtracting the activity of the nonstimulated PBMCs (Figure 2).   At week 0 or baseline, 20/42 (47.6%) showed a significant number of spots (>5 spots/1 × 105 PBMC) in response to ATC.  A similar result was seen at week 4, with 20/42 (47.6%) patients demonstrating response to their autologous tumor cells.  Many of the same patients had measurable responses at both weeks (17/20).Patients were then divided into two cohorts based upon whether they demonstrated greater than or less than 5 spots per 100,000 PBMC in response to autologous tumor cells as means of defining responders versus nonresponders at that time in their treatment schedule.   Table2 describes the patient clinical characteristics at the time of treatment for these cohorts.  Log-rank tests were calculated and Kaplan-Meier plots generated for progression-free and overall survival at either week 0 or week 4.   Baseline activity of tumor reactive lymphocytes at week 0 failed to correspond to either progression-free or overall survival.  But at week 4, tumor reactivity correlated unfavorably to overall survival but was not associated with progression-free survival (Figure 3).   A log-rank comparison of the 17 patients that had sustained tumor reactive lymphocytes (>5 spots/100 K PBMC at both week 0 and week 4) did not indicate an association with progression-free or overall survival (P=.177 and P=.156, resp.).Table 2
Comparison of patient characteristics in the two cohorts with ELISPOT results less than or greater than 5 spots/100 K PBMC in response to autologous tumor cells at week 0 and week 4 after receiving dendritic-cell-based antimelanoma therapy.
AllWeek 0 (<5 spots)Week 0 (>5 spots)Week 4 (<5 spots)Week 4 (>5 spots)SexM2614121511F168879Age (years)49.3 ± 14.146.0 ± 14.852.9 ± 12.846.7 ± 14.352.0 ± 13.8Disease statusM1a/b20713713M1c22157157Anergy116565Prior treatmentRT63333Chemo126657IL-2107364IFN-alpha159687GM-CSF189999Vaccine63333BCG21102mAb11010Biochemo16115115DC  phenotype% CD8038.6 ± 15.133.5 ± 15.244.4 ± 13.134.9 ± 14.742.8 ± 14.8% CD8310.9 ± 7.412.2 ± 7.09.5 ± 7.712.5 ± 7.19.1 ± 7.5% CD8682.5 ± 9.378.1 ± 13.569.6 ± 19.677.3 ± 13.070.4 ± 20.3% CD11c90.6 ± 7.389.3 ± 7.992.0 ± 6.488.8 ± 7.792.7 ± 6.3Doses 1–3Cell no. × 10616.3 ± 7.016.2 ± 6.816.4 ± 7.216.1 ± 7.216.4 ± 6.7% Viability80.4 ± 9.679.0 ± 9.682.0 ± 9.181.0 ± 9.679.8 ± 9.8DTHDTH+ (week 0)00000DTH+ (week 4)4 (2 eqv)2 (2 eqv)21 (1 eqv)3ECOG status030181218121103737221111serum LDH (ng/mL)LDH (week 0)578.6 ± 391.3453.2 ± 93.7716.6* ± 531.4487.6 ± 162.3678.7 ± 530.2LDH (week 4)594.6 ± 504.9441.7 ± 92.9762.9* ± 695.5496.1 ± 321.6703.1* ± 642.0Each value is average ± SD where applicable.  M1a: distant skin, lymph nodes, M1b: lung, and M1c:  brain, liver or other visceral organs.  RT: radiotherapy, Chemo: chemotherapy (temodar, cisplatin, vinblasin, tamoxifen, etc.), Vaccine: allogeneic tumor cell/lysate or peptide vaccines, BCG: bacillus calmette guerin, mAb: MDX-010, Biochemo: IL-2 ± IFN plus chemotherapy, DTH: delayed type hypersensitivity, eqv:  equivocal result, LDH: lactose dehydrogenase.*P≤.05 compared to <5 spots/100 K PBMC.The induction of IFN-γ secreting lymphocytes in response to autologous tumor cells and correlation to either progression-free or overall survival at either week 0 or week 4.  Patient cohorts were grouped according to whether they had an average of greater than (>) or less than (<) 5 spots/100 K PBMC per well observed at week 0 and week 4.  Sample sizes: Week 0, N=20 for >5 spots/well and 22 for <5 spots/well, and for week 4, N=20 for >5 spots/well and 22 for <5 spots/well.  Log-rank testing was used to determine P values.
(a)(b)(c)(d)Although it appears that patients in the >5 spots/100 K PBMC had significantly higher lactose dehydrogenase (LDH) serum values at both week 0 and week 4 (Table2), no significant correlation to clinical performance was found based solely on LDH values (P=.197 and P=.263, PFS and OS, resp.).   Additionally, the number of ECOG 1 and 2 patients in the >5 spots/100 K PBMC is higher (8 versus 4 in the <5 spots/100 K PBMC group) which may influence the survival results since it was noted that patients who have higher ECOG scores tend to not perform as well clinically.


## 4. Discussion

Attempts to find a reliable surrogate for monitoring of immune response during the course of immune-based therapies for cancer continues to be a challenge.  The generation of cytotoxic T lymphocytes (CTL) can be used as a measure of the effectiveness of antigen presentation by dendritic cells, but only in a minority of cases does antigen-specific CTL activity correlate with clinical outcome [12].The ELISPOT assay is a convenient method to monitor immune response since the cells used in the assay can be cryopreserved during the course of treatment and assayed together at a later date thus avoiding plate-to-plate variability.  Samples handled in this way, proved to be reliably accurate and there appeared to be no adverse functional effects on the peripheral blood lymphocytes due to cryopreservation as previously reported [13].  The use of whole tumor cells as the antigen source, even at significantly high concentration (4 × 105/well), did not contribute to significant background in the ELISPOT assay, indicating that even a heterogeneous population of autologous tumor cells can be used in this assay.Other investigators have reported immune responses in the context of ELISPOT assays which correlated with either disease-free survival or overall survival [1, 14] but in those cases, the antigens used to induce immunity were specific peptides plus GM-CSF without dendritic cells.  In studies that have involved the use of dendritic cells, the correlation between ELISPOT results and survival have been mixed [15] and only a few reports have been published that use autologous tumor cells as the antigen source to measure immune recognition which were found not to correspond to outcome [16].   In addition, the extent of disease burden of patients enrolled in a study in which immune monitoring was conducted was also a contributing factor in measurable responses.  Patients with heavy disease burden were reported to be less responsive immunologically to therapy [17].   However, in our study it appeared that many of the patients who had a higher ECOG performance scores (ECOG 1 or 2) retained their ability to respond to their autologous tumors cells.  It should be noted however that patients in this study group with ECOG scores of 1 or 2 had significantly lower progression-free and overall survival than those who had ECOG scores of 0 (P=.002 and .001, resp.).  This contribution may explain why there appears to be a significant difference in overall survival in patients who have >5 spots/100 K PBMC as indicated in Figure 3.However, the observation of the correlation of lack of response to autologous tumor cells and improved overall survival is counter intuitive.  The reason for that observation remains unclear but a recent publication by our laboratory showed a relationship between the induction of apoptosis in response to interferon-gamma by tumor cells and poorer clinical performance [18].  The use of apoptotic cells in immunotherapy has been associated with the induction of tolerance in some cases [19].  It is possible that patients who responded to their autologous tumor cells by releasing interferon-gamma in the ELISPOT assay may also be inducing tolerance in situ (i.e., at the site of disease). Tumor infiltrating lymphocytes encountering tumor cells may be releasing interferon-gamma which in turn induces tolerance through apoptosis of tumor cells and phagocytosis of resident dendritic cells.Overall, the results are in line with previous reports dealing with complex immune responses but further investigations will be necessary to determine what immune monitoring assay can be employed in this setting.



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