# An Optical Overview of Poly[μ2-L-alanine-μ3-nitrato-sodium(I)] Crystals

Authors: E. Gallegos-Loya; E. Orrantia-Borunda; A. Duarte-Moller
Journal: The Scientific World Journal
 (2012)

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## Abstract

Single crystals of the semiorganic materials, L-alanine sodium nitrate (LASN) and D-alanine sodium nitrate (DASN), were grown from an aqueous solution by slow-evaporation technique. X-ray diffraction (XRD) studies were carried for the doped grown crystals. The absorption of these grown crystals was analyzed using UV-Vis-NIR studies, and it was found that these crystals possess minimum absorption from 200 to 1100 nm. An infrared (FTIR) spectrum of single crystal has been measured in the 4000–400 cm−1 range. The assignment of the observed vibrational modes to corresponding symmetry type has been performed. A thermogravimetric study was carried out to determine the thermal properties of the grown crystal. The efficiency of second harmonic generation was obtained by a variant of the Kurtz-Perry method.


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## Body

## 1. Introduction

Some organic compounds exhibit large NLO response, in many cases, orders of magnitude largest than widely known inorganic materials. They also offer the flexibility of molecular design and the promise of virtually an unlimited number of crystalline structures [1–3]. A number of such crystals, especially from the amino acids family, have recently been reported [4–8]. Some crystals of the amino acids with simple inorganic salts appear to be promising materials for optical second harmonic generation (SHG) [9].The amino acids display specific features of interest, such as (i) molecular chirality, which secures acentric crystallographic structures; (ii) absence of strongly conjugated bonds, leading to wide transparency ranges in the visible and UV spectral regions; (iii) zwitterionic nature of the molecule, which favours crystal hardness [9]. Further to that, amino acids can be used (iv) as chiral auxiliaries for nitroaromatics and other donor-acceptor molecules with large hyperpolarizabilities and (v) as a basis for synthesizing organic-inorganic compounds [3].A series of studies on semiorganic amino acid compounds such as L-arginine phosphate (LAP), L-arginine hydrobromide (L-AHBr), L-histidine tetrafluoroborate (L-HFB) [3], L-arginine hydrochloride (L-AHCl) [5], L-alanine acetate (L-AA) [6], and glycine sodium nitrate (GSN) [7, 10] as potential NLO crystals have been reported. L-alanine is an amino acid, and it forms a number of complexes on reaction with inorganic acid and salts to produce an outstanding material for NLO applications.The compound poly[μ2-L-alanine-μ3-nitrato-sodium(I)], [Na (NO3) (C3H7NO2)]n [10], was obtained as the product of an attempted reaction of sodium nitrate and the amino acid L-alanine in aqueous solution. In the present investigation, single crystals of poly[μ2-L-alanine-μ3-nitrato-sodium(I)] and D-alanine sodium nitrate were grown and characterized by single crystal X-ray diffraction, Fourier transform infrared (FTIR) and high resolution Raman, HR-Raman, spectroscopic studies, thermogravimetric analysis (TGA/DSC), UV-Vis-NIR spectral analysis, and second harmonic generation (SHG).These compounds have medicinal features that cover a variety of important biological activities, such as the inhibition of specific enzymes or antiviral and antitumor activity [11, 12]. When used in combination with β-lactam antibiotics, polyoxotungstates enhance the antibiotic effectiveness against otherwise resistant strains of bacteria [13]. The heptamolybdate, in particular the [NH3Pri]6[Mo7O24]·3H2O, had shown a potent in vivoantitumor activity, which has been explained by repeated redox cycles of [Mo7O24]6 in the tumor cells [14].The compounds, L-alanine sodium nitrate and D-alanine sodium nitrate, were obtained as the product by reaction of sodium nitrate and the amino acids L-alanine and D-alanine in aqueous solution. In the present investigation, single crystals were grown and characterized by X-ray diffraction powder, Fourier transform infrared (FTIR) spectroscopic studies, thermogravimetric analysis (TGA/DTA), UV-Vis-NIR spectral analysis, and the efficiency of second harmonic generation (SHG).


## 2. Experimental Details

The crystals obtained during the development of this work were grown by slow evaporation technique at room temperature through an aqueous solution. The reactive commercially available L-alanine and D-alanine C3H7NO2 were used with stoichiometry Sigma-Aldrich lab with 98% purity and molecular weight 89.09 g/mol and the sodium nitrate NaNO3 stoichiometry Sigma-Aldrich lab with 99.9% purity and molecular weight 84.99 g/mol. The samples were prepared 1 : 1 molar ratio in distilled water and constant agitation for 35 min and a temperature of 60°C. The evaporation time for the L-alanine sodium nitrate solution at room temperature was 45 days and 60 days for the D-alanine solution.The Phillips Expert powder X-ray diffractometer with Cu Kα radiation (λ=1.5428Å) was used for the powder X-ray diffraction pattern. The sample was scanned in the 2θ values ranging from 10 to 60 degrees at the rate of 0.05°/min.In order to analyze the presence of functional groups, FTIR spectrum was recorded in the range of 400 cm−1 to 4000 cm−1 using a MAGNO IR 750 series II NICOLET spectrometer. The samples were added to a matrix of KBr to perform this procedure.The UV-Vis spectra give limited information about the structure of the molecule because the absorption of UV and visible light involves promotions of the electrons in theπ* and σ* orbitals from the ground sate to higher energy states. The transition spectra is very important for any NLO material because it can be of practical use only if it has a wide transparency window. NLO materials have a practical use only if they have a wide transparency state. To find this absorbance window, a Lambda 10 Perkin Elmer UV-Vis spectrometer was used. The scanning was done in the range of 200 to 1100 nm the same way as with the FTIR.TGA/DSC was done in a TA Instruments STD 2960 Simultaneous TGA/DSC. The samples were heated from room temperature to more than 1000°C at rate of 10°C/min.In order to find the SHG, the crystals were grown according to the Kurtz and Perry technique [9] into powder (about 70 μm) and densely packed between two transparent microscope glass slides [15, 16]. Once the samples were placed into the glass slides, a Nd:YAG Quanta ray INDI series laser of 1064 nm generating an 8 ns pulse and operated at 6 mJ/pulse and at rate of 10 Hz is pumped at the proper angle and distance in order to see SHG on green color (532 nm) that corresponds to the expected emitted light and it is the half wavelength of the incoming light.


## 3. Results and Discussion

### 3.1. X-Ray Diffraction Analysis

The resultant peaks in the powder X-ray pattern displayed in Figure1 shows an intense peak at 20.54°, which coincides with the plane (120) and the reflections of the planes (020), (110), (040), (140), (111), (220), (102), (131), (142), and (260), corresponding to the principal planes of the L-alanine present in the L-alanine sodium nitrate, where the planes (012) and (104) were identified with nitrate. The peaks appearing in the spectrum that have not been identified can be attributed to the formation of the L-alanine sodium nitrate compound. In both the L-alanine and D-alanine cases, the presence of an intense peak at 20.59° which coincides with the plane (120) and reflections from planes (020), (110), (011), (111), (210), (012), (220), (211), (230), and (241), corresponding to the principal planes of the D-alanine present in the D-alanine sodium nitrate, was identified. The planes (012), (104), (110), (113), and (122) were identified with nitrate. The peaks appearing in the spectrum that have not been identified can be attributed to the formation of the compound D-alanine sodium nitrate.Figure 1
Powder X-ray diffractogram of L-alanine sodium nitrate (LASN) and D-alanine sodium nitrate (DASN).


### 3.2. Thermal Analysis

Figure2 shows the TGA pattern of the LASN and DASN showing good stability below 220°C with a rapid dropping beyond that temperature [8, 17]. Also, Figure 2 shows the DSC pattern of LASN where an exothermic transition appears at about 230°C. Mean while, the pure presents another endothermic transition at 400°C [9, 17]. Within this temperature range, the possible NLO applications become promising due to the use of laser powers, for LASN and DASN performing below 230°C.Figure 2
TGA and DSC curves of LASN and DASN.


### 3.3. FT-IR Study

In order to obtain the presence of functional groups, FTIR spectrum was recorded in the range of 400 cm−1 to 4000 cm−1 by using a MAGNO IR 750 series II Nicolet spectrometer.The samples of L-Alanine sodium nitrate (LASN) and D-alanine sodium nitrate (DASN) were added to a matrix of KBr to perform this procedure as shown in Figure3. The presence of the carboxyl acid group around 3000 cm−1 can be observed due to the alanine presence. The main internal vibrations of alanine are observed on the functional groups (NH3+, CH2, COO−) which is in agreement with the data reported before [9], symmetric and asymmetric bending vibrations were observed on the CH3 groups for LASN and DASN at 2987 and 1454 cm−1. The peak at 2599 and 2601 cm−1 is a symmetrical stretching CH to LASN and DASN, respectively. The 1151, 1218, and 1236 cm−1 frequencies are attributed to the rocking deformation of the NH3+ group [5]. Furthermore, the peak 1048 cm−1 is a symmetrical stretching of CCN group.Figure 3
FTIR spectrum of LASN and DASN.Other low frequency bands are typical for N–H⋯O hydrogen bonds arising from the overtones around the 2727 cm−1. The rest of the functional groups COO−, CN, and NO3 between 500 and 1500 cm−1 also agree with the reported data.Usually, the presence of nitrates in the lattice can be identified by their characteristic signature in the ranges 1660–1625, 1300–1255, 870–833, and 763–690 cm−1 [18]. Parent compound traces were identified in the synthesized compound. The presence of the NO3 group in the LASN and DASN can be identified by the peaks at 1358, 1113, 849, and 771 cm−1. The symmetric and asymmetric NH3+ stretching vibrations appear at frequencies 2941 and 2110 cm−1, respectively. The absorption peaks at 1613, 1584, and 1518 cm−1 for LASN and 1614, 1585, and 1519 cm−1 for DASN confirm the presence of NH3 bending. The presence of nitro-groups in the spectrum confirms the LASN and DASN compounds. Other important functional groups are detailed in Table 1.Table 1
FT-IR and Raman functional group assignments of the grown LASN and DASN.
RAMAN (cm−1)FTIR (cm−1)AssignmentsLASNDASNLASNDASN3706Overtone3426Overtone3062Symmetric CH3 stretching30003003Asymmetric CH3 stretching2987Symmetric CH3 stretching29642964CH2 stretching and asymmetric CH3 stretching2948Symmetric CH2 stretching29412941Symmetric NH3 stretching29362933Asymmetric CH2 stretching28882888CH2 stretching2734Overtone27282727N–H⋯O and O–H⋯O stretching26032601Symmetric CH stretching2599Symmetric CH stretching25122511Overtone2484Overtone24442442Overtone2251CH3 stretching21232119Overtone21102110Asymmetric NH3 stretching1939Asymmetric NH3 deformation1775Asymmetric COO stretching1659Asymmetric NH3 deformation1630Asymmetric NH3 deformation16131614NH3 bending15991596Asymmetric NH3 deformation15841585NH3 bending1571Asymmetric COO- stretching1543Overtone1531Symmetric NH3 deformation15181519NH3 bending1503CH3 deformation1496Overtone14861489Asymmetric COO- deformation14661465CβH2 scissors mode14541454Asymmetric CH3 bending1422CH3 bending141214111411Symmetric C–COO− stretching1386CH3 puckering13631366Wagging CH2 deformation13581358NO3 stretching1312CH2 wagging13061306C–H and N–H bending1297Flexed position CH2123512361236NH3+ rocking12181218NH3+ rocking1151115011511151NH3+ rocking and symmetric COO− stretching1113111211131113NO3 stretching1070Overtone105010481048Symmetric CCN stretching10221027CH3 rocking10121012Overtone of torsional oscillationNH3+926NH3 rocking936CH2 rocking918919Overtone of torsional oscillationNH3+853850N–C stretching849847NO3 stretching829829C–C stretching774774OH deformation771771NO3 stretching725COO wagging677678NO3- in plane deformation651646647COO− in plane deformation578578Overtone


### 3.4. Raman Spectroscopy

The Raman spectra was carried out at room temperature in frequency range 400–4000 cm−1 by using a LabRAM H-R Raman microscope HORIBA system. The laser Raman spectrum, showing the presence of more intense peak around 850 cm−1, is due to COO− stretching mode of vibrations (see Figure 4). The peaks at 1113 and 1112 cm−1 are assigned to NO3 stretching.Figure 4
Raman spectrum of LASN and DASN.The C–H and N–H bending vibrations are observed at 1306 cm−1 as a sharp peak. The asymmetric CH3 bending at 1422 cm−1 and O–H bending is around 950 cm−1 [19]. The peak at 1411 cm−1 is assigned to the symmetric stretching C–COO carboxyl group.In Raman spectra of alanine, the symmetric and asymmetric deformation vibrations of theNH3+ groups appear in the region between 1680 and 1470 cm−1 [20]; in the spectrum L-alanine and D-alanine, we found in 1531 y 1939, 1659, 1630, 1599, 1596 cm−1 frequency. The position of NH3+ asymmetric stretching frequency indicates the formation of intra- and intermolecular strong N–H⋯O hydrogen bonding of the NH3+ group, with the oxygen of both, the carbonyl group and inorganic nitrates [10, 21]. The study of symmetry stretching and stretching vibration of CH2 group is observed in 2948 and 2964, 2888 cm−1. The band around 1235, 1150, 1151, and 926 cm−1 is also indicative of the NH3 rocking modes. The peak at 1366 cm−1 is a deformation of CH2 group, at 1312 cm−1 is attributed to the CH2 wagging. The intensity varies upon the source used for analyzing the sample. Other important functional groups are detailed in Table 1.


### 3.5. UV-Vis Study

Figure5 presents the absorbance zone above 250 nm (ultra-violet wavelength) where a wide band completely transparent in all the visible range is observed (infrared wavelengths) [9, 19, 22]. This means that this material presents a good nonabsorbance band in the visible range for expected applications. A little protuberance around the 300 nm is observed [7]. This little peak is still outside the visible zone (UV zone), and it could present some absorbance if the crystal was to be excited with 600 nm (red color) trying to obtain a second harmonic of 300 nm (UV color). Other noticeable characteristic in the absorption spectrum is a wide transparency window within the range of 400–1100 nm which is desirable for NLO crystals because the absorptions in an NLO material near the fundamental or second harmonic signals will lead to the loss of the conversion of SHG. Due to this property, LASN and DASN have potential uses for SHG using an Nd:YAG laser (1064 nm) to emit a second harmonic signal within the green region (532 nm) of the electromagnetic spectra.Figure 5
UV-Vis window of the LASN and DASN.


### 3.6. SHG Signal Detection

Figure6 shows the data collected from the detector where the SHG signal is plotted versus the beam energy. This kind of experiments has been used in order to measure the damage threshold. In this case, the SHG intensity tends to increase when the beam energy is also increased. This experiment shows the good quality of these crystals for the second harmonic generation, but there is a better efficiency in the LASN sample.Figure 6
Quadratic fit for the SHG intensity as function of the beam energy.


## 3.1. X-Ray Diffraction Analysis

The resultant peaks in the powder X-ray pattern displayed in Figure1 shows an intense peak at 20.54°, which coincides with the plane (120) and the reflections of the planes (020), (110), (040), (140), (111), (220), (102), (131), (142), and (260), corresponding to the principal planes of the L-alanine present in the L-alanine sodium nitrate, where the planes (012) and (104) were identified with nitrate. The peaks appearing in the spectrum that have not been identified can be attributed to the formation of the L-alanine sodium nitrate compound. In both the L-alanine and D-alanine cases, the presence of an intense peak at 20.59° which coincides with the plane (120) and reflections from planes (020), (110), (011), (111), (210), (012), (220), (211), (230), and (241), corresponding to the principal planes of the D-alanine present in the D-alanine sodium nitrate, was identified. The planes (012), (104), (110), (113), and (122) were identified with nitrate. The peaks appearing in the spectrum that have not been identified can be attributed to the formation of the compound D-alanine sodium nitrate.Figure 1
Powder X-ray diffractogram of L-alanine sodium nitrate (LASN) and D-alanine sodium nitrate (DASN).


## 3.2. Thermal Analysis

Figure2 shows the TGA pattern of the LASN and DASN showing good stability below 220°C with a rapid dropping beyond that temperature [8, 17]. Also, Figure 2 shows the DSC pattern of LASN where an exothermic transition appears at about 230°C. Mean while, the pure presents another endothermic transition at 400°C [9, 17]. Within this temperature range, the possible NLO applications become promising due to the use of laser powers, for LASN and DASN performing below 230°C.Figure 2
TGA and DSC curves of LASN and DASN.


## 3.3. FT-IR Study

In order to obtain the presence of functional groups, FTIR spectrum was recorded in the range of 400 cm−1 to 4000 cm−1 by using a MAGNO IR 750 series II Nicolet spectrometer.The samples of L-Alanine sodium nitrate (LASN) and D-alanine sodium nitrate (DASN) were added to a matrix of KBr to perform this procedure as shown in Figure3. The presence of the carboxyl acid group around 3000 cm−1 can be observed due to the alanine presence. The main internal vibrations of alanine are observed on the functional groups (NH3+, CH2, COO−) which is in agreement with the data reported before [9], symmetric and asymmetric bending vibrations were observed on the CH3 groups for LASN and DASN at 2987 and 1454 cm−1. The peak at 2599 and 2601 cm−1 is a symmetrical stretching CH to LASN and DASN, respectively. The 1151, 1218, and 1236 cm−1 frequencies are attributed to the rocking deformation of the NH3+ group [5]. Furthermore, the peak 1048 cm−1 is a symmetrical stretching of CCN group.Figure 3
FTIR spectrum of LASN and DASN.Other low frequency bands are typical for N–H⋯O hydrogen bonds arising from the overtones around the 2727 cm−1. The rest of the functional groups COO−, CN, and NO3 between 500 and 1500 cm−1 also agree with the reported data.Usually, the presence of nitrates in the lattice can be identified by their characteristic signature in the ranges 1660–1625, 1300–1255, 870–833, and 763–690 cm−1 [18]. Parent compound traces were identified in the synthesized compound. The presence of the NO3 group in the LASN and DASN can be identified by the peaks at 1358, 1113, 849, and 771 cm−1. The symmetric and asymmetric NH3+ stretching vibrations appear at frequencies 2941 and 2110 cm−1, respectively. The absorption peaks at 1613, 1584, and 1518 cm−1 for LASN and 1614, 1585, and 1519 cm−1 for DASN confirm the presence of NH3 bending. The presence of nitro-groups in the spectrum confirms the LASN and DASN compounds. Other important functional groups are detailed in Table 1.Table 1
FT-IR and Raman functional group assignments of the grown LASN and DASN.
RAMAN (cm−1)FTIR (cm−1)AssignmentsLASNDASNLASNDASN3706Overtone3426Overtone3062Symmetric CH3 stretching30003003Asymmetric CH3 stretching2987Symmetric CH3 stretching29642964CH2 stretching and asymmetric CH3 stretching2948Symmetric CH2 stretching29412941Symmetric NH3 stretching29362933Asymmetric CH2 stretching28882888CH2 stretching2734Overtone27282727N–H⋯O and O–H⋯O stretching26032601Symmetric CH stretching2599Symmetric CH stretching25122511Overtone2484Overtone24442442Overtone2251CH3 stretching21232119Overtone21102110Asymmetric NH3 stretching1939Asymmetric NH3 deformation1775Asymmetric COO stretching1659Asymmetric NH3 deformation1630Asymmetric NH3 deformation16131614NH3 bending15991596Asymmetric NH3 deformation15841585NH3 bending1571Asymmetric COO- stretching1543Overtone1531Symmetric NH3 deformation15181519NH3 bending1503CH3 deformation1496Overtone14861489Asymmetric COO- deformation14661465CβH2 scissors mode14541454Asymmetric CH3 bending1422CH3 bending141214111411Symmetric C–COO− stretching1386CH3 puckering13631366Wagging CH2 deformation13581358NO3 stretching1312CH2 wagging13061306C–H and N–H bending1297Flexed position CH2123512361236NH3+ rocking12181218NH3+ rocking1151115011511151NH3+ rocking and symmetric COO− stretching1113111211131113NO3 stretching1070Overtone105010481048Symmetric CCN stretching10221027CH3 rocking10121012Overtone of torsional oscillationNH3+926NH3 rocking936CH2 rocking918919Overtone of torsional oscillationNH3+853850N–C stretching849847NO3 stretching829829C–C stretching774774OH deformation771771NO3 stretching725COO wagging677678NO3- in plane deformation651646647COO− in plane deformation578578Overtone


## 3.4. Raman Spectroscopy

The Raman spectra was carried out at room temperature in frequency range 400–4000 cm−1 by using a LabRAM H-R Raman microscope HORIBA system. The laser Raman spectrum, showing the presence of more intense peak around 850 cm−1, is due to COO− stretching mode of vibrations (see Figure 4). The peaks at 1113 and 1112 cm−1 are assigned to NO3 stretching.Figure 4
Raman spectrum of LASN and DASN.The C–H and N–H bending vibrations are observed at 1306 cm−1 as a sharp peak. The asymmetric CH3 bending at 1422 cm−1 and O–H bending is around 950 cm−1 [19]. The peak at 1411 cm−1 is assigned to the symmetric stretching C–COO carboxyl group.In Raman spectra of alanine, the symmetric and asymmetric deformation vibrations of theNH3+ groups appear in the region between 1680 and 1470 cm−1 [20]; in the spectrum L-alanine and D-alanine, we found in 1531 y 1939, 1659, 1630, 1599, 1596 cm−1 frequency. The position of NH3+ asymmetric stretching frequency indicates the formation of intra- and intermolecular strong N–H⋯O hydrogen bonding of the NH3+ group, with the oxygen of both, the carbonyl group and inorganic nitrates [10, 21]. The study of symmetry stretching and stretching vibration of CH2 group is observed in 2948 and 2964, 2888 cm−1. The band around 1235, 1150, 1151, and 926 cm−1 is also indicative of the NH3 rocking modes. The peak at 1366 cm−1 is a deformation of CH2 group, at 1312 cm−1 is attributed to the CH2 wagging. The intensity varies upon the source used for analyzing the sample. Other important functional groups are detailed in Table 1.


## 3.5. UV-Vis Study

Figure5 presents the absorbance zone above 250 nm (ultra-violet wavelength) where a wide band completely transparent in all the visible range is observed (infrared wavelengths) [9, 19, 22]. This means that this material presents a good nonabsorbance band in the visible range for expected applications. A little protuberance around the 300 nm is observed [7]. This little peak is still outside the visible zone (UV zone), and it could present some absorbance if the crystal was to be excited with 600 nm (red color) trying to obtain a second harmonic of 300 nm (UV color). Other noticeable characteristic in the absorption spectrum is a wide transparency window within the range of 400–1100 nm which is desirable for NLO crystals because the absorptions in an NLO material near the fundamental or second harmonic signals will lead to the loss of the conversion of SHG. Due to this property, LASN and DASN have potential uses for SHG using an Nd:YAG laser (1064 nm) to emit a second harmonic signal within the green region (532 nm) of the electromagnetic spectra.Figure 5
UV-Vis window of the LASN and DASN.


## 3.6. SHG Signal Detection

Figure6 shows the data collected from the detector where the SHG signal is plotted versus the beam energy. This kind of experiments has been used in order to measure the damage threshold. In this case, the SHG intensity tends to increase when the beam energy is also increased. This experiment shows the good quality of these crystals for the second harmonic generation, but there is a better efficiency in the LASN sample.Figure 6
Quadratic fit for the SHG intensity as function of the beam energy.


## 4. Conclusions

A new nonlinear optical semiorganic crystal, LASN, and DASN were grown by the slow evaporation technique from aqueous solution. Functional groups of good quality crystals of LASN and DASN have been detected by FTIR and Raman spectroscopies.Also based on UV-Vis spectra observations, an absorption zone below the 250 nm (ultra-violet wavelengths) can be seen recovering a good transmittance values across all the visible range until near IR frequencies and beyond. This situation shows these crystals can be used for applications involving the band of visible light. The transparency of the crystal in the visible and infrared regions shown in transmission spectra confirms the NLO property of this.Other characterization was the thermal response. The TGA/DSC results showed a degrading temperature about 230°C which promises to have good applications at high temperatures, revealing that the crystal is thermally stable until that temperature.The SHG test is the first one performed in this kind of material, and it was observed that the SHG intensity tends to be directly proportional to the beam energy and follows a linear tendency with a positive slope which promises to be a good nonlinear optical material.Finally, we conclude that we succeeded in obtaining good quality crystals of LASN and DASN, and, for the first time, the second harmonic generation was detected in this material which indicates that these crystals are new materials with nonlinear optical properties with potential applications.



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*Source: 620189-2012-04-01.xml*