# Plant Beneficial Endophytic Bacteria from the EthnomedicinalMussaenda roxburghii (Akshap) of Eastern Himalayan Province, India

Authors: Pramod Kumar Pandey; Ramkrishna Samanta; Raj Narain Singh Yadav
Journal: Advances in Biology
 (2015)

---

## Abstract

Mussaenda roxburghii are very important ethnomedicinal plant, used for its various applications from the ancient period. The role of their associated plant beneficial endophytic bacteria was evaluated, which were previously untapped. Among the isolates, PAK6 was identified as efficient phosphate solubilizer, quantified by the molybdenum blue method. Four isolates PAK1, PAK2, PAK3, and PAK8 were able to synthesize significant level of IAA in the presence and absence of tryptophan. Isolates PAK1 and PAK9 were able to produce siderophore on CAS agar media, PAK2 and PAK9 were able to produce HCN, and PAK7 and PAK8 were able to grow on N2-free medium. All the isolates were able to produce a moderate level of polysaccharide and tolerate up to 10% of NaCl. Isolates PAK3, PAK6, PAK7, and PAK8 were able to grow well at pH 5.0 and isolates PAK2, PAK7, and PAK8 were able to tolerate 600 μg mL−1 of Al+3, while all the isolates except PAK1 showed a tolerance to 600 μg mL−1 of Mn+2 tested. Endophytic bacterial isolates PAK6 and PAK9 were effective againstSclerotinia sclerotiorum andSclerotium rolfsii.


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## Body

## 1. Introduction

Plants are the potential reservoir of indigenous microbes principally known as endophyte which can reside inside their tissue without giving any external visible symptoms and is responsible for nutrient assimilation and processing, induction of defense system, and synthesis of secondary metabolites [1]. They are reported to function more efficiently in comparison to external bacteria because a ready-made atmosphere is provided for their growth and proliferation. They transfer information via interaction with the host plant and evolved biochemical pathways which results in the production of plant growth regulators, bioactive compounds, possesses the property of allelopathy and provides resistance to diseases. Besides this they also improve the plant’s ability to withstand with environmental stresses, increase soil fertility through the phosphate solubilization and nitrogen fixation, indole acetic acid (IAA), and siderophore production, supply essential vitamins to the plants, provide a range of natural products that could be utilized for the potential use in industries and agriculture [2].The forest rich region is identified as to encompass a source of an enormous, relatively unexplored microbial diversity that seems to have unique genotype and biological systems that may have external applications for the host plant on which they inhabit normally as endophytes.Akshap (Mussaenda roxburghii) is a perennial shrub that belongs to the family Rubiaceae cultivated in the foothills and moist areas and known for its high level of fiber content and vitamins [3]. The leaves are cooked and served as vegetables. Iridoid and shanzhiol were reported from the aerial part ofMussaenda roxburghii and showed antibacterial activity against theStaphylococcus aureus andEscherichia coli [4]. Roots are useful in jaundice, skin diseases, cuts, wounds, and so forth [5, 6]. Leaves are utilized to treat bone fractures [7]. Leaf extracts ofMussaenda roxburghii were evaluated for preliminary antimicrobial activity against the various pathogenic Gram-positive bacteria and Gram-negative bacteria [8].Arunachal Pradesh is considered as one of the major biodiversity “hot spots” in the world located in the Eastern Himalayan province. About two-third of the state is covered with forest. Pasighat is the headquarter of East Siang District in the Arunachal Pradesh that lies on the geographical coordinates of 28.0700°N and 95.3300°E at a level of 155 m above mean sea level. The area experiences tropical humid climate during summer and dry mild winter. The place is known for receiving the highest rainfall in a single year with average rainfall 4,388.3 mm.Keeping in the view a study was planned to evaluate the plant beneficial endophytic bacteria isolated from the ethnomedicinal plantMussaenda roxburghii of biodiversity hot spot Eastern Himalayan province of Arunachal Pradesh, India.


## 2. Materials and Methods

### 2.1. Isolation and Enumeration of Endophytes

Whole plants ofMussaenda roxburghii were uprooted manually at their preanthesis stage for the isolation of endophytic bacteria and cleaned thoroughly with tap water. The plant parts (leaves, stems, and roots) were rinsed first with tap water and then five times with sterile distilled water (SDW) to remove the soil particles and dust and finally cut into 2 to 5 cm long pieces. All the plant samples were blotted dry with the help of autoclaved filter paper and then weighed to have a final weight of 3.0 g. Plant samples were surface-sterilized with 70% ethanol for 1 min and then with 2% NaOCl for 2 min for leaf and stem while 2% NaOCl for 3 min in root. They were then finally rinsed four times with autoclaved sterile distilled water (SDW) and dried in laminar flow. A 100 μL aliquot from the final wash was inoculated on nutrient agar (NA) media by the pour plate method to confirm sterility. Sterilization process was considered successful and further process of endophyte isolation was continued if no growth was observed on the plate after incubation otherwise the complete process of surface sterilization was repeated. After successful sterilization about 1.0 g samples of leaf/stem/root are separately macerated under aseptic conditions with a sterile mortar and pestle in 9.0 mL of sterile water and 1.0 mL of aliquot was serially diluted up to 10−7 in potassium phosphate buffer. Each sample (100 μL) was inoculated on nutrient agar (NA) media by the pour plate method in three replications and incubated at 28
±
2°C. Bacterial colonies appearing on the plates were purified by repeated streak culture. The endophytic bacterial isolates were selected based on distinct colony morphology and growth and maintained on slants. The purified endophytic bacterial isolates with 50% (w/v) glycerol in nutrient broth were maintained in deep freezer (−80°C) for long term storage and in nutrient agar slant at 4°C for short term storage.


### 2.2. Morphological and Biochemical Characterization

Morphological and biochemical characterization such as colonial surface, colony edge, colony elevation, margin, pigmentation, cell shape, Gram reaction, endospore staining, motility, catalase, oxidase, nitrate reduction test, H2S production, indole production, MRVP test, citrate utilization test, ability to ferment carbohydrate, and enzymatic activity of all isolates were performed by adopting standard procedures, tentatively characterized, grouped, and documented.


### 2.3. Plant Beneficial Trait

#### 2.3.1. Phosphate Solubilization

The phosphate solubilization ability of the endophytic bacterial isolates was carried out by using NBRI-BPB agar medium (g L−1; glucose 10, Ca3(PO4)3 5, MgSO4·7H2O 0.25, MgCl2·6H2O 5, KCl 0.2, (NH4)2SO4 0.1, BPB 0.025, agar 20, and pH 7) [9] and Pikovskaya’s agar medium procured from Himedia Laboratories Pvt. Ltd., Mumbai, India. Phosphate solubilizing activities were screened by measuring the clearing zone surrounding the developed bacterial colony via calculation of phosphate solubilization index:(1)
Phosphate solubilization index
=
A
B
×
100
.
A= total diameter (colony + halo zone). B = diameter of colony.Since the plate assay is not considered as a reliable method to screen the effective phosphate solubilizer endophytic isolates, hence, the endophytic isolates were screened in broth medium containing 5 g L−1 Ca3(PO4)2 as the insoluble P source. Each of the isolates was inoculated to Pikovskaya broth (100 mL) [10] and incubated for 14 days at 28°C. After incubation, the broth cultures were spun at 9000 rpm for 20 min. The supernatant was used for estimation of inorganic phosphorus by the molybdenum blue method [11]. The amount of phosphate released in the flasks after incubation was estimated in comparison with a set of uninoculated controls. 1 mL of supernatant was taken in a 50 mL flask to which 10 mL of chloromolybdic acid was added and mixed thoroughly. The volume was made up to three-fourths with distilled water and 0.25 mL of chlorostannous acid was added. Immediately the volume was made up to 50 mL with distilled water. After 15 min the blue colour developed was read on a spectrophotometer at 610 nm using reagent blank. A standard curve was prepared using different concentrations of standard potassium dihydrogen phosphate solution. The amount of inorganic phosphorus released was calculated from the standard graph.


#### 2.3.2. Indole Acetic Acid Production

All the endophytic bacterial isolates were screened for the production of IAA according to the modified method as described by Noori and Saud [12]. The test bacterial culture was inoculated in the two sets of nutrient broth tubes, one tube supplemented with 5 μg mL−1 of L-tryptophan and incubated at 28
±
2°C for 5 days. Cultures were centrifuged at 10.000 rpm for 10 min and 1 mL of the supernatant was mixed with a drop of orthophosphoric acid and 2 mL of Salkowski’s reagent (50 mL, 35% perchloric acid; 1 mL 0.5 M FeCl3) and incubated at room temperature for 30 min in the dark. The appearance of red to pink colour indicates IAA production. Spectrophotometric absorbance at 535 nm was quantified as μg mL−1 by comparing with known standard of IAA. Nutrient broth without bacterial culture serves as control.


#### 2.3.3. Siderophore Production

Siderophores are iron chelating compounds produced by many bacteria. Siderophore production was determined by the method of Schwyn and Neilands [13]. For this, pure culture of endophytic bacteria was spotted onto plates containing CAS (Chrome Azurol S) agar and the plates were incubated at 30°C for 2–6 days. The plates with yellow halo indicate production of siderophore.


#### 2.3.4. Cyanogenesis (HCN Production)

HCN production by the endophytic bacterial strains was detected by the method of Lorck [14]. The endophytic bacterial strains were grown in nutrient agar supplemented with glycine (4.4 g L−1). A disc of the sterilized Whatman filter paper was immersed in 1% picric acid in 10% Na2CO3 for 1 min and was placed underneath the Petri plate lids under aseptic condition. The plates were sealed with Parafilm and were incubated at 28
±
1°C for 24–72 h. Change in colour from yellow to reddish brown of filter paper indicated production of HCN. In case of a negative test, the deep yellow colour of the filter paper remained unchanged after growth of bacteria.


#### 2.3.5. Ability to Produce Exopolysaccharide by Endophytic Bacteria

Exopolysaccharide production ability of endophytic bacterial isolates was tested by the plate assay containing nutrient media with high (5%) sucrose concentration (g L−1; beef extract 3, sucrose 50, peptone 5, NaCl 5, agar 15, and pH 7). The isolates were streaked on the plates and incubated at 30°C for 4–7 days. The plates were examined for thick, viscous mass over the streak and considered as positive for polysaccharides production [15].


#### 2.3.6. Growth on Nitrogen-Free Media by Endophytic Bacteria

Endophytic bacterial isolates were tested for their ability to grow in nitrogen-free media as described by Anu Rajan [15]. Nitrogen-free mannitol agar medium (g L−1; mannitol 10, CaCO3 5, K2HPO4 0.5, MgSO4·7H2O 0.2, NaCl 0.2, ferric chloride-trace amount, MnSO4·4H2O-trace amount, agar 15, and pH 7.0) and Jensen’s medium (g L−1; sucrose 20, K2HPO4 1, MgSO4 0.5, NaCl 0.5, Na2MoO4 0.001, FeSO4 0.01, CaCO3 2, agar 15, pH 7.0) were used because carbon sources of these media are different. Precaution was taken to avoid any nitrogen source in the media and glassware. Streaked endophytic bacterial isolates on the above mentioned media were incubated at 30°C for about 1 week. Growth of endophytic bacterial isolates with glistening colonies in the above nitrogen-free media was identified as positive for nitrogen fixation.


#### 2.3.7. Abiotic Stress Tolerance Evaluation of Bacterial Endophytes

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Nutrient agar (NA) medium containing 2–10% NaCl was used for salt (NaCl) tolerance ability of endophytic bacterial strains [1]. After increasing the salt concentration, the bacterial cultures were streaked on the Petri plates and incubated at 28
±
1°C for 48 h to see their growth. The endophytic bacterial isolates were screened for tolerance to acidic pH on YEM plates set at 3.0, 4.0, 5.0, 6.0, and 6.9 pH values, using the (20 mM) MES (SIGMA) buffers. The medium was buffered with HCl to set the desired pH values. The endophytic bacterial isolates were screened for tolerance to heavy metals, namely, Al+3 and Mn+2, according to the modified method of Konate et al. [16]. The tolerance of isolates to Al+3 and Mn+2 was determined on solid YEM medium. The stock solutions of Al+3 and Mn+2 metals were filter-sterilized and added to sterile agar as the following concentrations: AlCl3, 400–600 μg mL−1, and MnCl2, 500–600 μg mL−1.In Vitro Antagonistic Activity. The antagonistic activity of all endophytic bacterial isolates was studied underin vitro condition against fungal pathogensSclerotium rolfsii andSclerotinia sclerotiorum by the dual culture plate technique on potato dextrose agar (PDA) [17]. A fungal pathogen mycelial disc of 5 mm was placed in the middle of Petri plate and incubated at 28°C for 24 hours. After that a loophole of endophytic bacterial culture was then streaked to either side of the pathogen disc at equidistance on the same dish. After 1 week the zone of inhibition as the distance between the fungal pathogen and endophytic bacterial culture was recorded. Based on the efficacy of antagonistic activity of endophytic bacteria, percent growth inhibition (PGI) and growth inhibition category (GIC) were analyzed and bacterial endophytes were categorized accordingly [18]:(2)
Percent Growth Inhibition
PGI
%
=
K
R
-
R
1
K
R
×
100
,where K
R is the distance (in mm) from the point of inoculation to the colony margin of fungal pathogen on the control dishes and R
1 is the distance (in mm) from the point of inoculation to the colony margin of fungal growth on the endophytic bacterial culture inoculated dishes.Based on the efficiency of PGI endophytic bacterial isolates were categorized into five growth inhibition categories, with ranges from 0 to 4: (0) no growth inhibition, (1) up to 25% growth inhibition, (2) up to 50% growth inhibition, (3) up to 75% growth inhibition, and (4) up to 100% growth inhibition.


### 2.4. Data Analysis

All the experiments were performed in triplicate. Data were analyzed by one-way analysis of variance (ANOVA) and the mean separations were performed by Tukey HSD posttest with SPSS version 16 (IBM Corporation, Armonk, NY, USA). Differences atP
<
0.05 were considered significant.


## 2.1. Isolation and Enumeration of Endophytes

Whole plants ofMussaenda roxburghii were uprooted manually at their preanthesis stage for the isolation of endophytic bacteria and cleaned thoroughly with tap water. The plant parts (leaves, stems, and roots) were rinsed first with tap water and then five times with sterile distilled water (SDW) to remove the soil particles and dust and finally cut into 2 to 5 cm long pieces. All the plant samples were blotted dry with the help of autoclaved filter paper and then weighed to have a final weight of 3.0 g. Plant samples were surface-sterilized with 70% ethanol for 1 min and then with 2% NaOCl for 2 min for leaf and stem while 2% NaOCl for 3 min in root. They were then finally rinsed four times with autoclaved sterile distilled water (SDW) and dried in laminar flow. A 100 μL aliquot from the final wash was inoculated on nutrient agar (NA) media by the pour plate method to confirm sterility. Sterilization process was considered successful and further process of endophyte isolation was continued if no growth was observed on the plate after incubation otherwise the complete process of surface sterilization was repeated. After successful sterilization about 1.0 g samples of leaf/stem/root are separately macerated under aseptic conditions with a sterile mortar and pestle in 9.0 mL of sterile water and 1.0 mL of aliquot was serially diluted up to 10−7 in potassium phosphate buffer. Each sample (100 μL) was inoculated on nutrient agar (NA) media by the pour plate method in three replications and incubated at 28
±
2°C. Bacterial colonies appearing on the plates were purified by repeated streak culture. The endophytic bacterial isolates were selected based on distinct colony morphology and growth and maintained on slants. The purified endophytic bacterial isolates with 50% (w/v) glycerol in nutrient broth were maintained in deep freezer (−80°C) for long term storage and in nutrient agar slant at 4°C for short term storage.


## 2.2. Morphological and Biochemical Characterization

Morphological and biochemical characterization such as colonial surface, colony edge, colony elevation, margin, pigmentation, cell shape, Gram reaction, endospore staining, motility, catalase, oxidase, nitrate reduction test, H2S production, indole production, MRVP test, citrate utilization test, ability to ferment carbohydrate, and enzymatic activity of all isolates were performed by adopting standard procedures, tentatively characterized, grouped, and documented.


## 2.3. Plant Beneficial Trait

### 2.3.1. Phosphate Solubilization

The phosphate solubilization ability of the endophytic bacterial isolates was carried out by using NBRI-BPB agar medium (g L−1; glucose 10, Ca3(PO4)3 5, MgSO4·7H2O 0.25, MgCl2·6H2O 5, KCl 0.2, (NH4)2SO4 0.1, BPB 0.025, agar 20, and pH 7) [9] and Pikovskaya’s agar medium procured from Himedia Laboratories Pvt. Ltd., Mumbai, India. Phosphate solubilizing activities were screened by measuring the clearing zone surrounding the developed bacterial colony via calculation of phosphate solubilization index:(1)
Phosphate solubilization index
=
A
B
×
100
.
A= total diameter (colony + halo zone). B = diameter of colony.Since the plate assay is not considered as a reliable method to screen the effective phosphate solubilizer endophytic isolates, hence, the endophytic isolates were screened in broth medium containing 5 g L−1 Ca3(PO4)2 as the insoluble P source. Each of the isolates was inoculated to Pikovskaya broth (100 mL) [10] and incubated for 14 days at 28°C. After incubation, the broth cultures were spun at 9000 rpm for 20 min. The supernatant was used for estimation of inorganic phosphorus by the molybdenum blue method [11]. The amount of phosphate released in the flasks after incubation was estimated in comparison with a set of uninoculated controls. 1 mL of supernatant was taken in a 50 mL flask to which 10 mL of chloromolybdic acid was added and mixed thoroughly. The volume was made up to three-fourths with distilled water and 0.25 mL of chlorostannous acid was added. Immediately the volume was made up to 50 mL with distilled water. After 15 min the blue colour developed was read on a spectrophotometer at 610 nm using reagent blank. A standard curve was prepared using different concentrations of standard potassium dihydrogen phosphate solution. The amount of inorganic phosphorus released was calculated from the standard graph.


### 2.3.2. Indole Acetic Acid Production

All the endophytic bacterial isolates were screened for the production of IAA according to the modified method as described by Noori and Saud [12]. The test bacterial culture was inoculated in the two sets of nutrient broth tubes, one tube supplemented with 5 μg mL−1 of L-tryptophan and incubated at 28
±
2°C for 5 days. Cultures were centrifuged at 10.000 rpm for 10 min and 1 mL of the supernatant was mixed with a drop of orthophosphoric acid and 2 mL of Salkowski’s reagent (50 mL, 35% perchloric acid; 1 mL 0.5 M FeCl3) and incubated at room temperature for 30 min in the dark. The appearance of red to pink colour indicates IAA production. Spectrophotometric absorbance at 535 nm was quantified as μg mL−1 by comparing with known standard of IAA. Nutrient broth without bacterial culture serves as control.


### 2.3.3. Siderophore Production

Siderophores are iron chelating compounds produced by many bacteria. Siderophore production was determined by the method of Schwyn and Neilands [13]. For this, pure culture of endophytic bacteria was spotted onto plates containing CAS (Chrome Azurol S) agar and the plates were incubated at 30°C for 2–6 days. The plates with yellow halo indicate production of siderophore.


### 2.3.4. Cyanogenesis (HCN Production)

HCN production by the endophytic bacterial strains was detected by the method of Lorck [14]. The endophytic bacterial strains were grown in nutrient agar supplemented with glycine (4.4 g L−1). A disc of the sterilized Whatman filter paper was immersed in 1% picric acid in 10% Na2CO3 for 1 min and was placed underneath the Petri plate lids under aseptic condition. The plates were sealed with Parafilm and were incubated at 28
±
1°C for 24–72 h. Change in colour from yellow to reddish brown of filter paper indicated production of HCN. In case of a negative test, the deep yellow colour of the filter paper remained unchanged after growth of bacteria.


### 2.3.5. Ability to Produce Exopolysaccharide by Endophytic Bacteria

Exopolysaccharide production ability of endophytic bacterial isolates was tested by the plate assay containing nutrient media with high (5%) sucrose concentration (g L−1; beef extract 3, sucrose 50, peptone 5, NaCl 5, agar 15, and pH 7). The isolates were streaked on the plates and incubated at 30°C for 4–7 days. The plates were examined for thick, viscous mass over the streak and considered as positive for polysaccharides production [15].


### 2.3.6. Growth on Nitrogen-Free Media by Endophytic Bacteria

Endophytic bacterial isolates were tested for their ability to grow in nitrogen-free media as described by Anu Rajan [15]. Nitrogen-free mannitol agar medium (g L−1; mannitol 10, CaCO3 5, K2HPO4 0.5, MgSO4·7H2O 0.2, NaCl 0.2, ferric chloride-trace amount, MnSO4·4H2O-trace amount, agar 15, and pH 7.0) and Jensen’s medium (g L−1; sucrose 20, K2HPO4 1, MgSO4 0.5, NaCl 0.5, Na2MoO4 0.001, FeSO4 0.01, CaCO3 2, agar 15, pH 7.0) were used because carbon sources of these media are different. Precaution was taken to avoid any nitrogen source in the media and glassware. Streaked endophytic bacterial isolates on the above mentioned media were incubated at 30°C for about 1 week. Growth of endophytic bacterial isolates with glistening colonies in the above nitrogen-free media was identified as positive for nitrogen fixation.


### 2.3.7. Abiotic Stress Tolerance Evaluation of Bacterial Endophytes

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Nutrient agar (NA) medium containing 2–10% NaCl was used for salt (NaCl) tolerance ability of endophytic bacterial strains [1]. After increasing the salt concentration, the bacterial cultures were streaked on the Petri plates and incubated at 28
±
1°C for 48 h to see their growth. The endophytic bacterial isolates were screened for tolerance to acidic pH on YEM plates set at 3.0, 4.0, 5.0, 6.0, and 6.9 pH values, using the (20 mM) MES (SIGMA) buffers. The medium was buffered with HCl to set the desired pH values. The endophytic bacterial isolates were screened for tolerance to heavy metals, namely, Al+3 and Mn+2, according to the modified method of Konate et al. [16]. The tolerance of isolates to Al+3 and Mn+2 was determined on solid YEM medium. The stock solutions of Al+3 and Mn+2 metals were filter-sterilized and added to sterile agar as the following concentrations: AlCl3, 400–600 μg mL−1, and MnCl2, 500–600 μg mL−1.In Vitro Antagonistic Activity. The antagonistic activity of all endophytic bacterial isolates was studied underin vitro condition against fungal pathogensSclerotium rolfsii andSclerotinia sclerotiorum by the dual culture plate technique on potato dextrose agar (PDA) [17]. A fungal pathogen mycelial disc of 5 mm was placed in the middle of Petri plate and incubated at 28°C for 24 hours. After that a loophole of endophytic bacterial culture was then streaked to either side of the pathogen disc at equidistance on the same dish. After 1 week the zone of inhibition as the distance between the fungal pathogen and endophytic bacterial culture was recorded. Based on the efficacy of antagonistic activity of endophytic bacteria, percent growth inhibition (PGI) and growth inhibition category (GIC) were analyzed and bacterial endophytes were categorized accordingly [18]:(2)
Percent Growth Inhibition
PGI
%
=
K
R
-
R
1
K
R
×
100
,where K
R is the distance (in mm) from the point of inoculation to the colony margin of fungal pathogen on the control dishes and R
1 is the distance (in mm) from the point of inoculation to the colony margin of fungal growth on the endophytic bacterial culture inoculated dishes.Based on the efficiency of PGI endophytic bacterial isolates were categorized into five growth inhibition categories, with ranges from 0 to 4: (0) no growth inhibition, (1) up to 25% growth inhibition, (2) up to 50% growth inhibition, (3) up to 75% growth inhibition, and (4) up to 100% growth inhibition.


## 2.3.1. Phosphate Solubilization

The phosphate solubilization ability of the endophytic bacterial isolates was carried out by using NBRI-BPB agar medium (g L−1; glucose 10, Ca3(PO4)3 5, MgSO4·7H2O 0.25, MgCl2·6H2O 5, KCl 0.2, (NH4)2SO4 0.1, BPB 0.025, agar 20, and pH 7) [9] and Pikovskaya’s agar medium procured from Himedia Laboratories Pvt. Ltd., Mumbai, India. Phosphate solubilizing activities were screened by measuring the clearing zone surrounding the developed bacterial colony via calculation of phosphate solubilization index:(1)
Phosphate solubilization index
=
A
B
×
100
.
A= total diameter (colony + halo zone). B = diameter of colony.Since the plate assay is not considered as a reliable method to screen the effective phosphate solubilizer endophytic isolates, hence, the endophytic isolates were screened in broth medium containing 5 g L−1 Ca3(PO4)2 as the insoluble P source. Each of the isolates was inoculated to Pikovskaya broth (100 mL) [10] and incubated for 14 days at 28°C. After incubation, the broth cultures were spun at 9000 rpm for 20 min. The supernatant was used for estimation of inorganic phosphorus by the molybdenum blue method [11]. The amount of phosphate released in the flasks after incubation was estimated in comparison with a set of uninoculated controls. 1 mL of supernatant was taken in a 50 mL flask to which 10 mL of chloromolybdic acid was added and mixed thoroughly. The volume was made up to three-fourths with distilled water and 0.25 mL of chlorostannous acid was added. Immediately the volume was made up to 50 mL with distilled water. After 15 min the blue colour developed was read on a spectrophotometer at 610 nm using reagent blank. A standard curve was prepared using different concentrations of standard potassium dihydrogen phosphate solution. The amount of inorganic phosphorus released was calculated from the standard graph.


## 2.3.2. Indole Acetic Acid Production

All the endophytic bacterial isolates were screened for the production of IAA according to the modified method as described by Noori and Saud [12]. The test bacterial culture was inoculated in the two sets of nutrient broth tubes, one tube supplemented with 5 μg mL−1 of L-tryptophan and incubated at 28
±
2°C for 5 days. Cultures were centrifuged at 10.000 rpm for 10 min and 1 mL of the supernatant was mixed with a drop of orthophosphoric acid and 2 mL of Salkowski’s reagent (50 mL, 35% perchloric acid; 1 mL 0.5 M FeCl3) and incubated at room temperature for 30 min in the dark. The appearance of red to pink colour indicates IAA production. Spectrophotometric absorbance at 535 nm was quantified as μg mL−1 by comparing with known standard of IAA. Nutrient broth without bacterial culture serves as control.


## 2.3.3. Siderophore Production

Siderophores are iron chelating compounds produced by many bacteria. Siderophore production was determined by the method of Schwyn and Neilands [13]. For this, pure culture of endophytic bacteria was spotted onto plates containing CAS (Chrome Azurol S) agar and the plates were incubated at 30°C for 2–6 days. The plates with yellow halo indicate production of siderophore.


## 2.3.4. Cyanogenesis (HCN Production)

HCN production by the endophytic bacterial strains was detected by the method of Lorck [14]. The endophytic bacterial strains were grown in nutrient agar supplemented with glycine (4.4 g L−1). A disc of the sterilized Whatman filter paper was immersed in 1% picric acid in 10% Na2CO3 for 1 min and was placed underneath the Petri plate lids under aseptic condition. The plates were sealed with Parafilm and were incubated at 28
±
1°C for 24–72 h. Change in colour from yellow to reddish brown of filter paper indicated production of HCN. In case of a negative test, the deep yellow colour of the filter paper remained unchanged after growth of bacteria.


## 2.3.5. Ability to Produce Exopolysaccharide by Endophytic Bacteria

Exopolysaccharide production ability of endophytic bacterial isolates was tested by the plate assay containing nutrient media with high (5%) sucrose concentration (g L−1; beef extract 3, sucrose 50, peptone 5, NaCl 5, agar 15, and pH 7). The isolates were streaked on the plates and incubated at 30°C for 4–7 days. The plates were examined for thick, viscous mass over the streak and considered as positive for polysaccharides production [15].


## 2.3.6. Growth on Nitrogen-Free Media by Endophytic Bacteria

Endophytic bacterial isolates were tested for their ability to grow in nitrogen-free media as described by Anu Rajan [15]. Nitrogen-free mannitol agar medium (g L−1; mannitol 10, CaCO3 5, K2HPO4 0.5, MgSO4·7H2O 0.2, NaCl 0.2, ferric chloride-trace amount, MnSO4·4H2O-trace amount, agar 15, and pH 7.0) and Jensen’s medium (g L−1; sucrose 20, K2HPO4 1, MgSO4 0.5, NaCl 0.5, Na2MoO4 0.001, FeSO4 0.01, CaCO3 2, agar 15, pH 7.0) were used because carbon sources of these media are different. Precaution was taken to avoid any nitrogen source in the media and glassware. Streaked endophytic bacterial isolates on the above mentioned media were incubated at 30°C for about 1 week. Growth of endophytic bacterial isolates with glistening colonies in the above nitrogen-free media was identified as positive for nitrogen fixation.


## 2.3.7. Abiotic Stress Tolerance Evaluation of Bacterial Endophytes

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Nutrient agar (NA) medium containing 2–10% NaCl was used for salt (NaCl) tolerance ability of endophytic bacterial strains [1]. After increasing the salt concentration, the bacterial cultures were streaked on the Petri plates and incubated at 28
±
1°C for 48 h to see their growth. The endophytic bacterial isolates were screened for tolerance to acidic pH on YEM plates set at 3.0, 4.0, 5.0, 6.0, and 6.9 pH values, using the (20 mM) MES (SIGMA) buffers. The medium was buffered with HCl to set the desired pH values. The endophytic bacterial isolates were screened for tolerance to heavy metals, namely, Al+3 and Mn+2, according to the modified method of Konate et al. [16]. The tolerance of isolates to Al+3 and Mn+2 was determined on solid YEM medium. The stock solutions of Al+3 and Mn+2 metals were filter-sterilized and added to sterile agar as the following concentrations: AlCl3, 400–600 μg mL−1, and MnCl2, 500–600 μg mL−1.In Vitro Antagonistic Activity. The antagonistic activity of all endophytic bacterial isolates was studied underin vitro condition against fungal pathogensSclerotium rolfsii andSclerotinia sclerotiorum by the dual culture plate technique on potato dextrose agar (PDA) [17]. A fungal pathogen mycelial disc of 5 mm was placed in the middle of Petri plate and incubated at 28°C for 24 hours. After that a loophole of endophytic bacterial culture was then streaked to either side of the pathogen disc at equidistance on the same dish. After 1 week the zone of inhibition as the distance between the fungal pathogen and endophytic bacterial culture was recorded. Based on the efficacy of antagonistic activity of endophytic bacteria, percent growth inhibition (PGI) and growth inhibition category (GIC) were analyzed and bacterial endophytes were categorized accordingly [18]:(2)
Percent Growth Inhibition
PGI
%
=
K
R
-
R
1
K
R
×
100
,where K
R is the distance (in mm) from the point of inoculation to the colony margin of fungal pathogen on the control dishes and R
1 is the distance (in mm) from the point of inoculation to the colony margin of fungal growth on the endophytic bacterial culture inoculated dishes.Based on the efficiency of PGI endophytic bacterial isolates were categorized into five growth inhibition categories, with ranges from 0 to 4: (0) no growth inhibition, (1) up to 25% growth inhibition, (2) up to 50% growth inhibition, (3) up to 75% growth inhibition, and (4) up to 100% growth inhibition.


## 2.4. Data Analysis

All the experiments were performed in triplicate. Data were analyzed by one-way analysis of variance (ANOVA) and the mean separations were performed by Tukey HSD posttest with SPSS version 16 (IBM Corporation, Armonk, NY, USA). Differences atP
<
0.05 were considered significant.


## 3. Results and Discussion

A total of seven endophytic bacterial isolates were selected for the further studies based on the distinct colony characteristics isolated from theMussaenda roxburghii‘s stem, leaves, and root. The surface sterilization is quite satisfactory as no growth was observed on the control plate and, hence, the isolates are considered as endophytic bacteria ofMussaenda roxburghii.


### 3.1. Characterization

Morphological and biochemical characterization of all isolates were given in Table1. All the seven endophytic bacterial strains are Gram-negative rods and showed negative results for endospore staining. Out of seven isolates, six strains are motile while one is able to produce hydrogen sulfide. All the endophytic bacterial strains were positive towards the nitrate reduction test and MR test and negative towards indole formation, VP test, and citrate utilization test (Table 1). Fermentative degradation of various carbohydrates, namely, glucose, sucrose, lactose, mannitol, and mannose, by endophytic bacterial isolates was carried out in a fermentation tube that contains a Durham tube for the detection of gas production as an end product of metabolism and listed in Table 1. The enzymatic activity, namely, amylase, lipase, pectinases, and urease, of the endophytic bacterial isolates was examined and listed in Table 1. In the case of pectinase activity no clear zone was observed by any endophytic bacterial isolates, but the clear zone beneath the bacterial culture was considered as positive. All the isolates were tentatively characterized, grouped, and documented (Table 1).Table 1
Results of morphological and biochemical and carbohydrate utilization and enzymatic activity of endophytic bacterial isolates.
Characters tested
Endophytic bacterial isolates
PAK1
PAK2
PAK3
PAK6
PAK7
PAK8
PAK9
Morphological
Colonial surface
Smooth
Smooth
Smooth
Smooth
Concentric
Smooth
Smooth
Colony edge
Pinpointed
Fluidic smooth
Pinpointed
Pinpointed
Irregular
Pinpointed
Irregular
Colony elevation
Flat
Flat
Convex
Flat
Raised
Raised
Raised
Margin
Serrated
Serrated
Entire
Lobate
Lobate
Undulated
Undulated
Pigmentation
White
White
White
White
Orange
White
Yellowish
Biochemical
Gram stain
−
−
−
−
−
−
−
Motility
+
+
+
−/+
−/+
+
+
Nitrate reduction
+
+
+
−
+
+
−
H2S
−
−
−
+
−
+
−
Indole
−
−
−
−
−
−
−
MR test
+
+
+
+
+
+
+
VP test
−
−
−
−
−
−
−
Citrate utilization
+
−
−
−
−
−
−
Oxidase
+
+
−
−
+
+
−
Catalase
+
+
+
+
+
+
+
Carbohydrate utilization
Glucose
−
+
+
+
−
+
+
Sucrose
−
+
+
+
−
−
+
Lactose
−
−
+
+
−
−
−
Mannitol
−
−
+
−
−
−
−
Mannose
−
+
+
+
+
−
−
Enzymatic activity
Amylase
−
−
−
−
+
+
−
Gelatinase
−
−
−
−
+
−
−
Pectinase
−
−
−
+
−
−
+
Urease
−
−
+
−
−
−
−
Tentative identification
Pseudomonassp.
Pseudomonassp.
Klebsiellasp.
Acinetobactersp.
Pseudomonassp.
Pseudomonassp.
Acinetobactersp.
+: positive reaction; −: negative reaction.


### 3.2. Plant Beneficial Traits

#### 3.2.1. Phosphate Solubilization Activity of Endophytic Bacteria

Isolates PAK2, PAK3, PAK6, and PAK8 do have ability to solubilize inorganic phosphate supplemented with NBRI-BPB agar medium and the isolate PAK6 has the highest phosphate solubilization index of314.2
±
10.0 (Figure 1). Isolates PAK1, PAK2, PAK3, and PAK6 do have ability to solubilize inorganic phosphate supplemented with Pikovskaya’s agar medium and the isolate PAK6 was found to have the highest phosphate solubilization index of 160.00
±
5.0 (Figure 1). In molybdenum blue method all the isolates were reported to solubilize inorganic phosphate more than 3.7 ppm with the isolate PAK6 found to solubilize highest amount of 5.24
±
0.125 inorganic phosphate (Figure 2). Phosphate solubilizing microorganisms play an important role in supplementing phosphorus to the plants and increase the crop yield [19], through lowering the pH by organic acid production [20].Figure 1
Phosphate solubilization index by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Figure 2
Estimation of inorganic phosphate solubilization (ppm) by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


#### 3.2.2. Indole Acetic Acid (IAA) Production

All the endophytic bacterial isolates exhibited a significant amount of IAA. The data compared the presence and absence of tryptophan. Four isolates PAK1, PAK2, PAK3, and PAK8 were able to produce high IAA in the presence of tryptophan and hence indicate the utilization of tryptophan during IAA synthesis while isolates PAK6, PAK7, and PAK9 were found to produce low amount of IAA even in the presence of tryptophan. The endophytic bacterial isolates PAK1 and PAK3 were identified as potential isolates to produce IAA, respectively. In which PAK1 (16.86
±
0.20 in presence of 5 μg mL−1 of L-tryptophan and 15.26
±
0.20 in absence of L-tryptophan) were identified as highest producers of IAA (Figure 3). Different bacterial groups were reported to produce the IAA (indole-3-acetic acid), the most important auxin which regulates plant development such as cell expansion, division, differentiation, gene regulation, and other tropic responses [21]. Endophyte from the ginger root was identified and its ability to produce IAA was studied under various conditions [22].Figure 3
IAA production by the endophytic bacterial isolates ofMussaenda roxburghii. Values are mean + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


#### 3.2.3. Siderophore Production Activities of Endophytic Bacteria

Term siderophores belongs to a molecule which chelates the iron. They are generally less than about 1000 molecular weight and are produced by many microorganisms [23]. Their biosynthesis is influenced by the presence of iron; for example, their synthesis is repressed if the presence of iron is abundant in the environment [24]. Production of siderophore is very important because of the leading role of iron in the nitrogen fixation and assimilation processes. In the siderophore production experiment by the endophytic bacteria, isolates PAK1 and PAK9 were able to produce siderophore on CAS agar media (Table 2). Under iron limiting conditions, microbes and plant secrete siderophore form complex with iron and help in transport of iron inside the cell. As a result of siderophore production by endophytic bacteria, iron shortage of plant is neutralized which helps in the enhancement of the plant growth and yield [13]. Siderophore producing microbes can take away the limited iron and thus reduce its availability for growth of phytopathogens. They facilitate the plant growth promotion indirectly [22]. Siderophore-secreting bacteria inside the plant tissues help in the transport of Fe3+ inside the plant cell and contribute to the plant growth and productivity via synthesis of ATP, DNA precursor, and the heme [13, 23].Table 2
Results of siderophore, HCN production, salt (NaCl), pH, heavy metal (Al+3 and Mn+2) tolerance, growth on N-free media, and polysaccharide production by endophytic bacterial isolates.
Characters tested
Endophytic bacterial isolates
PAK1
PAK2
PAK3
PAK6
PAK7
PAK8
PAK9
Siderophore production
++
−
−
−
−
−
++
HCN production
−
++
−
−
−
−
++
Salt tolerance (NaCl)
2%
+++
+++
+++
+++
+++
+++
+
4%
+++
+++
+++
++
+++
+++
+
6%
+++
+++
+++
+++
+++
+++
+
8%
+++
+++
+++
+++
+++
+++
+
10%
+++
+++
++
++
++
++
+
pH tolerance
6.9
+
+
+++
+++
+++
++
+
6.0
−
+
++
+
+++
++
−
5.0
−
−
+
+
++
+
−
4.0
−
−
−
−
−
−
−
3.0
−
−
−
−
−
−
−
Heavy metal tolerance
Al+3 tolerance (400 μg/mL)
−
+
+
+
+
+
+
Al+3 tolerance (500 μg/mL)
−
+
+
+
+
+
−
Al+3 tolerance (600 μg/mL)
−
+
−
−
+
+
−
Mn+2 tolerance (500 μg/mL)
+
+
+
+
+
+
+
Mn+2 tolerance (600 μg/mL)
−
+
+
+
+
+
+
Growth on N-free media
Jensen’s medium
−
+
−
−
+
+
−
N-free mannitol agar
−
−
−
−
+
+
+
Polysaccharide production
24 hours
+
++
+
++
+
+
++
48 hours
++
++
++
++
++
++
++
−: no growth; +: slight growth; ++: moderate growth; +++: high growth.


#### 3.2.4. Cyanogenesis (HCN Production)

Endophytic bacterial isolates PAK2 and PAK9 were able to produce HCN (Table2). Cyanogenesis from glycine results in the production of HCN, which is volatile in nature. HCN acts as an inducer of resistance and constitutes a mechanism of defence against pathogen in plants [25].


#### 3.2.5. Polysaccharide Production and Growth on N-Free Media

Naturally bacterial surfaces are covered by a glycocalyx which is primarily made up of exopolysaccharide (EPS). Exopolysaccharide has been useful to act as adhesion for the interaction of microbes with the host surfaces [26]. The ability of endophytic bacteria to produce polysaccharide was recorded at the intervals of 24 hours and 48 hours of incubation period in plates at 30°C and listed in Table 2. The plates were visually observed for the production of viscous gelatinous mass of polysaccharide. All the isolates were able to produce a moderate level of polysaccharide production after 48 h of incubation.The ability of the endophytic bacterial isolates to grow on nitrogen-free media, namely, Jensen’s and N-free mannitol agar medium, was examined and listed in Table2. Of the seven isolates examined, three isolates PAK2, PAK7, and PAK8 were able to grow on Jensen’s nitrogen-free medium while the three isolates PAK7, PAK8, and PAK9 were able to grow on Waksman 77 medium (Table 2).Cajanus cajan (L.) native diazotrophsPseudomonas sp. JJS2 of Western Indian Himalayas showed good growth on N2-free media at room temperature; theirnifH fragment amplification confirms their diazotrophic nature [27]. An inoculation of the diazotrophs significantly improves the crop productivity and biomass in contrast to uninoculated control crop [28].


#### 3.2.6. Abiotic Stress Tolerance

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Endophytic bacterial strains showed good growth at the level of 2.0–10% NaCl (Table 2). Salinity affects many aspects of plant metabolism and the accumulation of various organic solutes that contribute to turgor maintenance. According to an estimate more than 20% of agricultural soil faces increase in salinity problems [29] and nearly 50% of the agriculturally important land will be affected by salinity stress by the year 2050 [30]. Rising of salt concentrations in soil and irrigation water creates a key threat to agricultural scenario, which could be managed by bacterial endophytes by osmotic adjustments, stomatal regulation, root morphology modification, and increase in uptake of minerals and by reducing the toxic effects of Na+ and Cl− [1].All the isolates were tested for variable pH. All the isolates were grown at pH 6.9. Five isolates were able to grow well at pH 6.0 and four isolates were able to grow at pH 5.0. Isolate PAK7 was identified to grow well at pH 5.0 among all isolates (Table2). Endophytic bacterial isolates PAK2, PAK7, and PAK8 were able to tolerate 600 μg mL−1 of Al+3 and all the isolates except PAK1 showed a tolerance to 600 μg mL−1 of Mn+2 tested (Table 2). Aluminium toxicity is one of the main abiotic stress factors that causes about 25–80% yield losses in various crop plants grown on soils with excessive Aluminium contents [31]. Indian land comprises 49 million ha soil affected by acidity in which 24 million ha has a pH below 5.5 [32] and 95% soil area of northeastern region of India is affected by acidity [33]. Acidic soil engaged with poor crop productivity and low soil fertility due to the combined effect of Aluminium and Manganese toxicities coupled with nutrient deficiencies (P, Ca, Mg, and K).In Vitro Antagonistic Activity Evaluation of Endophytic Bacteria. The efficacy of antagonistic activity of endophytic bacterial isolates against soil borne plant pathogenic fungiSclerotium rolfsii andSclerotinia sclerotiorum by dual platein vitro assay varied from poor to reasonable and the results showed that the bacterial endophytic isolates in dual culture evaluation inhibit the mycelia growth of fungal pathogens. Isolate PAK9 (52.5
±
10.0) reasonably inhibited the mycelia growth ofSclerotium rolfsii and belonged to the growth inhibition categories (GIC) of 3 while five isolates, namely, PAK6 (44.17
±
2.5), PAK7 (42.5
±
2.5), PAK8 (42.5
±
2.5), PAK2 (37.5
±
5.0), and PAK1 (30.0
±
12.5) (Figure 4), showed a good scale of antagonistic activity with GIC of 2. Similarly, of the seven isolates evaluated againstSclerotinia sclerotiorum (Figure 4) two isolates, namely, PAK6 (62.5
±
5.0) and PAK9 (62.5
±
10.0), reasonably inhibited the mycelia growth ofSclerotinia sclerotiorum and belonged to the growth inhibition categories (GIC) of 3. Two isolates, namely, PAK7 (47.5
±
2.5) and PAK8 (47.5
±
2.5), showed a good extent of antagonistic activity with GIC of 2 (Figure 4).Figure 4
Antagonistic activities by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Endophytic bacterial isolates PAK6 and PAK9 showed very good antagonistic activity againstSclerotinia sclerotiorum andSclerotium rolfsii, which remained constant over time. Hence, they must be used as a biocontrol agent to inhibit pathogen growth and development in crop plants by direct antagonistic mechanisms or induced resistance in the host plant by producing several metabolites that have an important role in inducing ISR against many plant diseases or produce lytic enzymes such as chitinases and glucanases which act on cell walls of organisms. Biological control may have been applied as an alternative to replace chemicals to control various plant diseases.


## 3.1. Characterization

Morphological and biochemical characterization of all isolates were given in Table1. All the seven endophytic bacterial strains are Gram-negative rods and showed negative results for endospore staining. Out of seven isolates, six strains are motile while one is able to produce hydrogen sulfide. All the endophytic bacterial strains were positive towards the nitrate reduction test and MR test and negative towards indole formation, VP test, and citrate utilization test (Table 1). Fermentative degradation of various carbohydrates, namely, glucose, sucrose, lactose, mannitol, and mannose, by endophytic bacterial isolates was carried out in a fermentation tube that contains a Durham tube for the detection of gas production as an end product of metabolism and listed in Table 1. The enzymatic activity, namely, amylase, lipase, pectinases, and urease, of the endophytic bacterial isolates was examined and listed in Table 1. In the case of pectinase activity no clear zone was observed by any endophytic bacterial isolates, but the clear zone beneath the bacterial culture was considered as positive. All the isolates were tentatively characterized, grouped, and documented (Table 1).Table 1
Results of morphological and biochemical and carbohydrate utilization and enzymatic activity of endophytic bacterial isolates.
Characters tested
Endophytic bacterial isolates
PAK1
PAK2
PAK3
PAK6
PAK7
PAK8
PAK9
Morphological
Colonial surface
Smooth
Smooth
Smooth
Smooth
Concentric
Smooth
Smooth
Colony edge
Pinpointed
Fluidic smooth
Pinpointed
Pinpointed
Irregular
Pinpointed
Irregular
Colony elevation
Flat
Flat
Convex
Flat
Raised
Raised
Raised
Margin
Serrated
Serrated
Entire
Lobate
Lobate
Undulated
Undulated
Pigmentation
White
White
White
White
Orange
White
Yellowish
Biochemical
Gram stain
−
−
−
−
−
−
−
Motility
+
+
+
−/+
−/+
+
+
Nitrate reduction
+
+
+
−
+
+
−
H2S
−
−
−
+
−
+
−
Indole
−
−
−
−
−
−
−
MR test
+
+
+
+
+
+
+
VP test
−
−
−
−
−
−
−
Citrate utilization
+
−
−
−
−
−
−
Oxidase
+
+
−
−
+
+
−
Catalase
+
+
+
+
+
+
+
Carbohydrate utilization
Glucose
−
+
+
+
−
+
+
Sucrose
−
+
+
+
−
−
+
Lactose
−
−
+
+
−
−
−
Mannitol
−
−
+
−
−
−
−
Mannose
−
+
+
+
+
−
−
Enzymatic activity
Amylase
−
−
−
−
+
+
−
Gelatinase
−
−
−
−
+
−
−
Pectinase
−
−
−
+
−
−
+
Urease
−
−
+
−
−
−
−
Tentative identification
Pseudomonassp.
Pseudomonassp.
Klebsiellasp.
Acinetobactersp.
Pseudomonassp.
Pseudomonassp.
Acinetobactersp.
+: positive reaction; −: negative reaction.


## 3.2. Plant Beneficial Traits

### 3.2.1. Phosphate Solubilization Activity of Endophytic Bacteria

Isolates PAK2, PAK3, PAK6, and PAK8 do have ability to solubilize inorganic phosphate supplemented with NBRI-BPB agar medium and the isolate PAK6 has the highest phosphate solubilization index of314.2
±
10.0 (Figure 1). Isolates PAK1, PAK2, PAK3, and PAK6 do have ability to solubilize inorganic phosphate supplemented with Pikovskaya’s agar medium and the isolate PAK6 was found to have the highest phosphate solubilization index of 160.00
±
5.0 (Figure 1). In molybdenum blue method all the isolates were reported to solubilize inorganic phosphate more than 3.7 ppm with the isolate PAK6 found to solubilize highest amount of 5.24
±
0.125 inorganic phosphate (Figure 2). Phosphate solubilizing microorganisms play an important role in supplementing phosphorus to the plants and increase the crop yield [19], through lowering the pH by organic acid production [20].Figure 1
Phosphate solubilization index by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Figure 2
Estimation of inorganic phosphate solubilization (ppm) by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


### 3.2.2. Indole Acetic Acid (IAA) Production

All the endophytic bacterial isolates exhibited a significant amount of IAA. The data compared the presence and absence of tryptophan. Four isolates PAK1, PAK2, PAK3, and PAK8 were able to produce high IAA in the presence of tryptophan and hence indicate the utilization of tryptophan during IAA synthesis while isolates PAK6, PAK7, and PAK9 were found to produce low amount of IAA even in the presence of tryptophan. The endophytic bacterial isolates PAK1 and PAK3 were identified as potential isolates to produce IAA, respectively. In which PAK1 (16.86
±
0.20 in presence of 5 μg mL−1 of L-tryptophan and 15.26
±
0.20 in absence of L-tryptophan) were identified as highest producers of IAA (Figure 3). Different bacterial groups were reported to produce the IAA (indole-3-acetic acid), the most important auxin which regulates plant development such as cell expansion, division, differentiation, gene regulation, and other tropic responses [21]. Endophyte from the ginger root was identified and its ability to produce IAA was studied under various conditions [22].Figure 3
IAA production by the endophytic bacterial isolates ofMussaenda roxburghii. Values are mean + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


### 3.2.3. Siderophore Production Activities of Endophytic Bacteria

Term siderophores belongs to a molecule which chelates the iron. They are generally less than about 1000 molecular weight and are produced by many microorganisms [23]. Their biosynthesis is influenced by the presence of iron; for example, their synthesis is repressed if the presence of iron is abundant in the environment [24]. Production of siderophore is very important because of the leading role of iron in the nitrogen fixation and assimilation processes. In the siderophore production experiment by the endophytic bacteria, isolates PAK1 and PAK9 were able to produce siderophore on CAS agar media (Table 2). Under iron limiting conditions, microbes and plant secrete siderophore form complex with iron and help in transport of iron inside the cell. As a result of siderophore production by endophytic bacteria, iron shortage of plant is neutralized which helps in the enhancement of the plant growth and yield [13]. Siderophore producing microbes can take away the limited iron and thus reduce its availability for growth of phytopathogens. They facilitate the plant growth promotion indirectly [22]. Siderophore-secreting bacteria inside the plant tissues help in the transport of Fe3+ inside the plant cell and contribute to the plant growth and productivity via synthesis of ATP, DNA precursor, and the heme [13, 23].Table 2
Results of siderophore, HCN production, salt (NaCl), pH, heavy metal (Al+3 and Mn+2) tolerance, growth on N-free media, and polysaccharide production by endophytic bacterial isolates.
Characters tested
Endophytic bacterial isolates
PAK1
PAK2
PAK3
PAK6
PAK7
PAK8
PAK9
Siderophore production
++
−
−
−
−
−
++
HCN production
−
++
−
−
−
−
++
Salt tolerance (NaCl)
2%
+++
+++
+++
+++
+++
+++
+
4%
+++
+++
+++
++
+++
+++
+
6%
+++
+++
+++
+++
+++
+++
+
8%
+++
+++
+++
+++
+++
+++
+
10%
+++
+++
++
++
++
++
+
pH tolerance
6.9
+
+
+++
+++
+++
++
+
6.0
−
+
++
+
+++
++
−
5.0
−
−
+
+
++
+
−
4.0
−
−
−
−
−
−
−
3.0
−
−
−
−
−
−
−
Heavy metal tolerance
Al+3 tolerance (400 μg/mL)
−
+
+
+
+
+
+
Al+3 tolerance (500 μg/mL)
−
+
+
+
+
+
−
Al+3 tolerance (600 μg/mL)
−
+
−
−
+
+
−
Mn+2 tolerance (500 μg/mL)
+
+
+
+
+
+
+
Mn+2 tolerance (600 μg/mL)
−
+
+
+
+
+
+
Growth on N-free media
Jensen’s medium
−
+
−
−
+
+
−
N-free mannitol agar
−
−
−
−
+
+
+
Polysaccharide production
24 hours
+
++
+
++
+
+
++
48 hours
++
++
++
++
++
++
++
−: no growth; +: slight growth; ++: moderate growth; +++: high growth.


### 3.2.4. Cyanogenesis (HCN Production)

Endophytic bacterial isolates PAK2 and PAK9 were able to produce HCN (Table2). Cyanogenesis from glycine results in the production of HCN, which is volatile in nature. HCN acts as an inducer of resistance and constitutes a mechanism of defence against pathogen in plants [25].


### 3.2.5. Polysaccharide Production and Growth on N-Free Media

Naturally bacterial surfaces are covered by a glycocalyx which is primarily made up of exopolysaccharide (EPS). Exopolysaccharide has been useful to act as adhesion for the interaction of microbes with the host surfaces [26]. The ability of endophytic bacteria to produce polysaccharide was recorded at the intervals of 24 hours and 48 hours of incubation period in plates at 30°C and listed in Table 2. The plates were visually observed for the production of viscous gelatinous mass of polysaccharide. All the isolates were able to produce a moderate level of polysaccharide production after 48 h of incubation.The ability of the endophytic bacterial isolates to grow on nitrogen-free media, namely, Jensen’s and N-free mannitol agar medium, was examined and listed in Table2. Of the seven isolates examined, three isolates PAK2, PAK7, and PAK8 were able to grow on Jensen’s nitrogen-free medium while the three isolates PAK7, PAK8, and PAK9 were able to grow on Waksman 77 medium (Table 2).Cajanus cajan (L.) native diazotrophsPseudomonas sp. JJS2 of Western Indian Himalayas showed good growth on N2-free media at room temperature; theirnifH fragment amplification confirms their diazotrophic nature [27]. An inoculation of the diazotrophs significantly improves the crop productivity and biomass in contrast to uninoculated control crop [28].


### 3.2.6. Abiotic Stress Tolerance

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Endophytic bacterial strains showed good growth at the level of 2.0–10% NaCl (Table 2). Salinity affects many aspects of plant metabolism and the accumulation of various organic solutes that contribute to turgor maintenance. According to an estimate more than 20% of agricultural soil faces increase in salinity problems [29] and nearly 50% of the agriculturally important land will be affected by salinity stress by the year 2050 [30]. Rising of salt concentrations in soil and irrigation water creates a key threat to agricultural scenario, which could be managed by bacterial endophytes by osmotic adjustments, stomatal regulation, root morphology modification, and increase in uptake of minerals and by reducing the toxic effects of Na+ and Cl− [1].All the isolates were tested for variable pH. All the isolates were grown at pH 6.9. Five isolates were able to grow well at pH 6.0 and four isolates were able to grow at pH 5.0. Isolate PAK7 was identified to grow well at pH 5.0 among all isolates (Table2). Endophytic bacterial isolates PAK2, PAK7, and PAK8 were able to tolerate 600 μg mL−1 of Al+3 and all the isolates except PAK1 showed a tolerance to 600 μg mL−1 of Mn+2 tested (Table 2). Aluminium toxicity is one of the main abiotic stress factors that causes about 25–80% yield losses in various crop plants grown on soils with excessive Aluminium contents [31]. Indian land comprises 49 million ha soil affected by acidity in which 24 million ha has a pH below 5.5 [32] and 95% soil area of northeastern region of India is affected by acidity [33]. Acidic soil engaged with poor crop productivity and low soil fertility due to the combined effect of Aluminium and Manganese toxicities coupled with nutrient deficiencies (P, Ca, Mg, and K).In Vitro Antagonistic Activity Evaluation of Endophytic Bacteria. The efficacy of antagonistic activity of endophytic bacterial isolates against soil borne plant pathogenic fungiSclerotium rolfsii andSclerotinia sclerotiorum by dual platein vitro assay varied from poor to reasonable and the results showed that the bacterial endophytic isolates in dual culture evaluation inhibit the mycelia growth of fungal pathogens. Isolate PAK9 (52.5
±
10.0) reasonably inhibited the mycelia growth ofSclerotium rolfsii and belonged to the growth inhibition categories (GIC) of 3 while five isolates, namely, PAK6 (44.17
±
2.5), PAK7 (42.5
±
2.5), PAK8 (42.5
±
2.5), PAK2 (37.5
±
5.0), and PAK1 (30.0
±
12.5) (Figure 4), showed a good scale of antagonistic activity with GIC of 2. Similarly, of the seven isolates evaluated againstSclerotinia sclerotiorum (Figure 4) two isolates, namely, PAK6 (62.5
±
5.0) and PAK9 (62.5
±
10.0), reasonably inhibited the mycelia growth ofSclerotinia sclerotiorum and belonged to the growth inhibition categories (GIC) of 3. Two isolates, namely, PAK7 (47.5
±
2.5) and PAK8 (47.5
±
2.5), showed a good extent of antagonistic activity with GIC of 2 (Figure 4).Figure 4
Antagonistic activities by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Endophytic bacterial isolates PAK6 and PAK9 showed very good antagonistic activity againstSclerotinia sclerotiorum andSclerotium rolfsii, which remained constant over time. Hence, they must be used as a biocontrol agent to inhibit pathogen growth and development in crop plants by direct antagonistic mechanisms or induced resistance in the host plant by producing several metabolites that have an important role in inducing ISR against many plant diseases or produce lytic enzymes such as chitinases and glucanases which act on cell walls of organisms. Biological control may have been applied as an alternative to replace chemicals to control various plant diseases.


## 3.2.1. Phosphate Solubilization Activity of Endophytic Bacteria

Isolates PAK2, PAK3, PAK6, and PAK8 do have ability to solubilize inorganic phosphate supplemented with NBRI-BPB agar medium and the isolate PAK6 has the highest phosphate solubilization index of314.2
±
10.0 (Figure 1). Isolates PAK1, PAK2, PAK3, and PAK6 do have ability to solubilize inorganic phosphate supplemented with Pikovskaya’s agar medium and the isolate PAK6 was found to have the highest phosphate solubilization index of 160.00
±
5.0 (Figure 1). In molybdenum blue method all the isolates were reported to solubilize inorganic phosphate more than 3.7 ppm with the isolate PAK6 found to solubilize highest amount of 5.24
±
0.125 inorganic phosphate (Figure 2). Phosphate solubilizing microorganisms play an important role in supplementing phosphorus to the plants and increase the crop yield [19], through lowering the pH by organic acid production [20].Figure 1
Phosphate solubilization index by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Figure 2
Estimation of inorganic phosphate solubilization (ppm) by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


## 3.2.2. Indole Acetic Acid (IAA) Production

All the endophytic bacterial isolates exhibited a significant amount of IAA. The data compared the presence and absence of tryptophan. Four isolates PAK1, PAK2, PAK3, and PAK8 were able to produce high IAA in the presence of tryptophan and hence indicate the utilization of tryptophan during IAA synthesis while isolates PAK6, PAK7, and PAK9 were found to produce low amount of IAA even in the presence of tryptophan. The endophytic bacterial isolates PAK1 and PAK3 were identified as potential isolates to produce IAA, respectively. In which PAK1 (16.86
±
0.20 in presence of 5 μg mL−1 of L-tryptophan and 15.26
±
0.20 in absence of L-tryptophan) were identified as highest producers of IAA (Figure 3). Different bacterial groups were reported to produce the IAA (indole-3-acetic acid), the most important auxin which regulates plant development such as cell expansion, division, differentiation, gene regulation, and other tropic responses [21]. Endophyte from the ginger root was identified and its ability to produce IAA was studied under various conditions [22].Figure 3
IAA production by the endophytic bacterial isolates ofMussaenda roxburghii. Values are mean + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).


## 3.2.3. Siderophore Production Activities of Endophytic Bacteria

Term siderophores belongs to a molecule which chelates the iron. They are generally less than about 1000 molecular weight and are produced by many microorganisms [23]. Their biosynthesis is influenced by the presence of iron; for example, their synthesis is repressed if the presence of iron is abundant in the environment [24]. Production of siderophore is very important because of the leading role of iron in the nitrogen fixation and assimilation processes. In the siderophore production experiment by the endophytic bacteria, isolates PAK1 and PAK9 were able to produce siderophore on CAS agar media (Table 2). Under iron limiting conditions, microbes and plant secrete siderophore form complex with iron and help in transport of iron inside the cell. As a result of siderophore production by endophytic bacteria, iron shortage of plant is neutralized which helps in the enhancement of the plant growth and yield [13]. Siderophore producing microbes can take away the limited iron and thus reduce its availability for growth of phytopathogens. They facilitate the plant growth promotion indirectly [22]. Siderophore-secreting bacteria inside the plant tissues help in the transport of Fe3+ inside the plant cell and contribute to the plant growth and productivity via synthesis of ATP, DNA precursor, and the heme [13, 23].Table 2
Results of siderophore, HCN production, salt (NaCl), pH, heavy metal (Al+3 and Mn+2) tolerance, growth on N-free media, and polysaccharide production by endophytic bacterial isolates.
Characters tested
Endophytic bacterial isolates
PAK1
PAK2
PAK3
PAK6
PAK7
PAK8
PAK9
Siderophore production
++
−
−
−
−
−
++
HCN production
−
++
−
−
−
−
++
Salt tolerance (NaCl)
2%
+++
+++
+++
+++
+++
+++
+
4%
+++
+++
+++
++
+++
+++
+
6%
+++
+++
+++
+++
+++
+++
+
8%
+++
+++
+++
+++
+++
+++
+
10%
+++
+++
++
++
++
++
+
pH tolerance
6.9
+
+
+++
+++
+++
++
+
6.0
−
+
++
+
+++
++
−
5.0
−
−
+
+
++
+
−
4.0
−
−
−
−
−
−
−
3.0
−
−
−
−
−
−
−
Heavy metal tolerance
Al+3 tolerance (400 μg/mL)
−
+
+
+
+
+
+
Al+3 tolerance (500 μg/mL)
−
+
+
+
+
+
−
Al+3 tolerance (600 μg/mL)
−
+
−
−
+
+
−
Mn+2 tolerance (500 μg/mL)
+
+
+
+
+
+
+
Mn+2 tolerance (600 μg/mL)
−
+
+
+
+
+
+
Growth on N-free media
Jensen’s medium
−
+
−
−
+
+
−
N-free mannitol agar
−
−
−
−
+
+
+
Polysaccharide production
24 hours
+
++
+
++
+
+
++
48 hours
++
++
++
++
++
++
++
−: no growth; +: slight growth; ++: moderate growth; +++: high growth.


## 3.2.4. Cyanogenesis (HCN Production)

Endophytic bacterial isolates PAK2 and PAK9 were able to produce HCN (Table2). Cyanogenesis from glycine results in the production of HCN, which is volatile in nature. HCN acts as an inducer of resistance and constitutes a mechanism of defence against pathogen in plants [25].


## 3.2.5. Polysaccharide Production and Growth on N-Free Media

Naturally bacterial surfaces are covered by a glycocalyx which is primarily made up of exopolysaccharide (EPS). Exopolysaccharide has been useful to act as adhesion for the interaction of microbes with the host surfaces [26]. The ability of endophytic bacteria to produce polysaccharide was recorded at the intervals of 24 hours and 48 hours of incubation period in plates at 30°C and listed in Table 2. The plates were visually observed for the production of viscous gelatinous mass of polysaccharide. All the isolates were able to produce a moderate level of polysaccharide production after 48 h of incubation.The ability of the endophytic bacterial isolates to grow on nitrogen-free media, namely, Jensen’s and N-free mannitol agar medium, was examined and listed in Table2. Of the seven isolates examined, three isolates PAK2, PAK7, and PAK8 were able to grow on Jensen’s nitrogen-free medium while the three isolates PAK7, PAK8, and PAK9 were able to grow on Waksman 77 medium (Table 2).Cajanus cajan (L.) native diazotrophsPseudomonas sp. JJS2 of Western Indian Himalayas showed good growth on N2-free media at room temperature; theirnifH fragment amplification confirms their diazotrophic nature [27]. An inoculation of the diazotrophs significantly improves the crop productivity and biomass in contrast to uninoculated control crop [28].


## 3.2.6. Abiotic Stress Tolerance

Salt (NaCl), pH, and Heavy Metal (Al
+3
and Mn
+2
) Tolerance. Endophytic bacterial strains showed good growth at the level of 2.0–10% NaCl (Table 2). Salinity affects many aspects of plant metabolism and the accumulation of various organic solutes that contribute to turgor maintenance. According to an estimate more than 20% of agricultural soil faces increase in salinity problems [29] and nearly 50% of the agriculturally important land will be affected by salinity stress by the year 2050 [30]. Rising of salt concentrations in soil and irrigation water creates a key threat to agricultural scenario, which could be managed by bacterial endophytes by osmotic adjustments, stomatal regulation, root morphology modification, and increase in uptake of minerals and by reducing the toxic effects of Na+ and Cl− [1].All the isolates were tested for variable pH. All the isolates were grown at pH 6.9. Five isolates were able to grow well at pH 6.0 and four isolates were able to grow at pH 5.0. Isolate PAK7 was identified to grow well at pH 5.0 among all isolates (Table2). Endophytic bacterial isolates PAK2, PAK7, and PAK8 were able to tolerate 600 μg mL−1 of Al+3 and all the isolates except PAK1 showed a tolerance to 600 μg mL−1 of Mn+2 tested (Table 2). Aluminium toxicity is one of the main abiotic stress factors that causes about 25–80% yield losses in various crop plants grown on soils with excessive Aluminium contents [31]. Indian land comprises 49 million ha soil affected by acidity in which 24 million ha has a pH below 5.5 [32] and 95% soil area of northeastern region of India is affected by acidity [33]. Acidic soil engaged with poor crop productivity and low soil fertility due to the combined effect of Aluminium and Manganese toxicities coupled with nutrient deficiencies (P, Ca, Mg, and K).In Vitro Antagonistic Activity Evaluation of Endophytic Bacteria. The efficacy of antagonistic activity of endophytic bacterial isolates against soil borne plant pathogenic fungiSclerotium rolfsii andSclerotinia sclerotiorum by dual platein vitro assay varied from poor to reasonable and the results showed that the bacterial endophytic isolates in dual culture evaluation inhibit the mycelia growth of fungal pathogens. Isolate PAK9 (52.5
±
10.0) reasonably inhibited the mycelia growth ofSclerotium rolfsii and belonged to the growth inhibition categories (GIC) of 3 while five isolates, namely, PAK6 (44.17
±
2.5), PAK7 (42.5
±
2.5), PAK8 (42.5
±
2.5), PAK2 (37.5
±
5.0), and PAK1 (30.0
±
12.5) (Figure 4), showed a good scale of antagonistic activity with GIC of 2. Similarly, of the seven isolates evaluated againstSclerotinia sclerotiorum (Figure 4) two isolates, namely, PAK6 (62.5
±
5.0) and PAK9 (62.5
±
10.0), reasonably inhibited the mycelia growth ofSclerotinia sclerotiorum and belonged to the growth inhibition categories (GIC) of 3. Two isolates, namely, PAK7 (47.5
±
2.5) and PAK8 (47.5
±
2.5), showed a good extent of antagonistic activity with GIC of 2 (Figure 4).Figure 4
Antagonistic activities by endophytic bacterial isolates ofMussaenda roxburghii. Values are mean values + SD from three replications and lower-case letters above the end of bar show the significant difference between experiments (P
<
0.05).Endophytic bacterial isolates PAK6 and PAK9 showed very good antagonistic activity againstSclerotinia sclerotiorum andSclerotium rolfsii, which remained constant over time. Hence, they must be used as a biocontrol agent to inhibit pathogen growth and development in crop plants by direct antagonistic mechanisms or induced resistance in the host plant by producing several metabolites that have an important role in inducing ISR against many plant diseases or produce lytic enzymes such as chitinases and glucanases which act on cell walls of organisms. Biological control may have been applied as an alternative to replace chemicals to control various plant diseases.


## 4. Conclusion

In the present study, our effort is to explore the ethnomedicinal plant Akshap (Mussaenda roxburghii) associated untapped endophytic bacterial isolate from the Eastern Himalayan province of India. The results from the present study point out thatMussaenda roxburghii were associated with potential endophytic bacteria, which can be utilized in future as an option for plant growth promoting agents and for controlling plant diseases.Mussaenda roxburghii associated endophytic isolate PAK1 was found to solubilize inorganic phosphate efficiently and significantly produces IAA and siderophore. Isolate PAK9 was identified to produce siderophore and HCN and was effective against the soil borne fungal plant pathogensSclerotium rolfsii andSclerotinia sclerotiorum. With all the above concern contents, these isolates may be developed as new inocula to utilize in agriculture sector and in industry.



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*Source: 580510-2015-11-23.xml*