# Optimal Synthesis of Horizontally Aligned Single-Walled Carbon Nanotubes and Their Biofunctionalization for Biosensing Applications

Authors: Dawoon Jung; Hyun Woo Park; Gidong Ma; Chang Young Lee; Taeyun Kwon; Jae-Hee Han
Journal: Journal of Nanomaterials
 (2016)

---

## Abstract

As an influential candidate for highly sensitive biomolecule sensor, which can capture disease related biomolecules, carbon nanotube is useful material due to its unique properties. To adopt as a sensing platform, it is strongly needed to find optimal refined synthetic condition. In order to find the optimal synthetic conditions of horizontally aligned CNT, we performed quantity control of the mixed gases of H2 and CH4 injected. We successfully find that the formation of amorphous-like carbon was critically affected by some gas condition such as the flow rate of injected gases and ratios of gas mixture. Moreover, it should be noted that our horizontally aligned carbon nanotube array platform developed would offer another potential in developing nanoscale light source, where light emission results from electron-hole carrier recombination.


---

## Body

## 1. Introduction

In the past decades, it has been attractive to the community to develop the novel bioassay toolkits, which allow the fast, reliable, label-free, and highly sensitive detection of specific biological species, eventually resulting in early diagnosis of diseases such as cancer [1–4]. To the best of our knowledge, the detection sensitivity of conventional toolkits, such as DNA microarray, based on fluorescence imaging is not as good as that required for early cancer diagnosis due to the relatively large sensing surface and ineffectiveness of fluorescence, for example, low durability, and fluorescence quenching [5–7].Scanning probe microscopy- (SPM-) based detection methods have recently served as a sensing toolkit that is able to sensitively identify the specific target biomolecules owing to the high spatial resolution of AFM (being even up to nanometer scale) [8–13]. For instance, tapping mode Atomic Force Microscopy (tmAFM) and Kelvin probe force microscopy (KPFM) have enabled the sensitive detection of biomolecules such as DNA, RNA, and proteins [8, 13]. In addition, SPM does not require the cumbersome processing of samples such as the labeling of fluorescence dyes to target biomolecules, which implies that the fabrication of the sensing substrate is cost-effective and straightforward.In addition to using SPM as an imaging toolkit, the preparation of nanoscale pattern is necessary in order for SPM-based sensing to achieve the high detection sensitivity. One of ways to prepare the nanoscale pattern is to consider carbon nanotube (CNT), which is useful material due to its unique properties. Specifically, it is easy to chemically modify the surface of CNT, particularly chemically attaching biological probes (e.g., aptamer, DNA, and RNA) to CNT surface. This easiness of the biological functionalization of CNT surface leads to the preparation of carbon nanotube-patterned surface that is able to specifically and selectively capture target biomolecules. In addition, as the diameter of CNT is in the order of 1 to at most 10 nm, the very minute amount of target biomolecules can be specifically captured to the small area of CNT-patterned surface, which indicates the high detection sensitivity of CNT-patterned surface.Based on aforementioned CNT-patterned surface along with SPM imaging technique, we have shown that a horizontally aligned carbon nanotube- (HACNT-) patterned surface enables the specific detection of biomolecules with ultra-sensitivity for early cancer diagnostics [14, 15]. In particular, it is shown that HACNT-patterned surface-based detection system is able to sense specific target biomolecules such as proteins (e.g., thrombin) and tumor marker. The detection limit of our detection system based on SPM imaging and HACNT-patterned surface is as low as single-molecule level, which is much better than the detection limit of other conventional bioassay toolkits.For sensitive detection based on aforementioned CNT-patterned surface, it is important to prepare the optimally patterned CNTs on the surface. In our previous works, the optimal patterning of CNTs on the surface has not been fully studied yet. For instance, when CNT pattern is not optimally designed, it is likely that amorphous carbon can undesirably be formed when CNT is chemically grown; this amorphous carbon may prevent the CNT-patterned surface from exhibiting the high detection sensitivity. In this work, we provide the optimal fabrication condition that allows us to prepare the well-designed CNT-patterned surface, which can serve as a biosensing platform. Moreover, we describe the optimal condition for chemical functionalization of CNTs patterned on the surface for specific and selective detection. In particular, we delineate the functionalization of CNTs with rhodamine dyes. The surface patterned with CNTs functionalized with rhodamine can act as a nanoscale optical device that may respond to the environmental change [16, 17].


## 2. Experimental Methods

### 2.1. Carbon Nanotube Synthesis and Functionalization

In order to synthesize the HACNT array, a thermal chemical vapor deposition (CVD) system (SciEnTech Co., Ltd.) was employed. In our previous work, the mechanism and details of thermal CVD system to grow the array are well described [14, 15, 18]. In brief, the thermal CVD system we used in this work consists of hydrocarbon feedstock gas (methane, CH4, 99.9%) as atomic carbon source for the nanotube growth, both hydrogen (H2, 99.999%) and argon (Ar, 99.999%) as catalytic carrier gases, and a SiO2/Si substrate with iron (Fe) catalyst layer. The growth time was fixed to 3 hours; the growth temperature varied between 1000 and 1100°C at atmospheric pressure. To functionalize the synthesized HACNT array with 4-aminophenyl-diazonium tetrafluoroborate salt (NH2-diazonium), the array was dipped into a solution of NH2-diazonium with a small amount of NaOH for catalyst for this chemical reaction with stirring at 50°C for 1 hour. After the NH2-diazonium functionalization, the array was redipped into a solution of rhodamine-b-isothiocyanate (RITC) dyes with stirring at room temperature for 10 hours. The morphology of the HACNT array after synthesis and a subsequent functionalization was characterized using scanning electron microscopy (SEM, Hitachi S-4700).


### 2.2. Atomic Force Microscopy Imaging

All images of CNT were acquired using a tapping mode at the scanned location. The SPM-based measurement was performed using Innova (Veeco Inc., Santa Barbara, CA, USA) with Nanocontroller V (Veeco Inc.) under an ambient condition at room temperature. To obtain images, we have utilized TESP-V2 tip (Veeco Inc.) as a scanning probe. Here, TESP-V2 tip has the normal resonant frequency of 320 kHz and tip radius of ~8 nm. The tapping mode AFM (tmAFM) images were acquired based on scanning speed of 1μm/s, which is suitable to guarantee the high-quality images. We obtained the tmAFM images for the scan size of 2 μm × 2 μm, which is a proper scan size to image a couple of CNTs on the substrate. All SPM images were generated from Nanoscope software V7.2.


### 2.3. Raman Spectroscopy

The degree of the functionalization of the HACNT array with NH2-diazonium and RITC was characterized using Raman spectroscopy (WITec, Alpha 300 M+, 532 nm laser excitation, and 300 nm spatial resolution). In particular, Raman spectra of the sample were obtained after the sample was fully dried at room temperature. Raman mapping was carried out with a spectral area of 10 × 10 μm2 using a customized built-in software, where points per line and scan speed were 100 and 13 seconds/line, respectively.


## 2.1. Carbon Nanotube Synthesis and Functionalization

In order to synthesize the HACNT array, a thermal chemical vapor deposition (CVD) system (SciEnTech Co., Ltd.) was employed. In our previous work, the mechanism and details of thermal CVD system to grow the array are well described [14, 15, 18]. In brief, the thermal CVD system we used in this work consists of hydrocarbon feedstock gas (methane, CH4, 99.9%) as atomic carbon source for the nanotube growth, both hydrogen (H2, 99.999%) and argon (Ar, 99.999%) as catalytic carrier gases, and a SiO2/Si substrate with iron (Fe) catalyst layer. The growth time was fixed to 3 hours; the growth temperature varied between 1000 and 1100°C at atmospheric pressure. To functionalize the synthesized HACNT array with 4-aminophenyl-diazonium tetrafluoroborate salt (NH2-diazonium), the array was dipped into a solution of NH2-diazonium with a small amount of NaOH for catalyst for this chemical reaction with stirring at 50°C for 1 hour. After the NH2-diazonium functionalization, the array was redipped into a solution of rhodamine-b-isothiocyanate (RITC) dyes with stirring at room temperature for 10 hours. The morphology of the HACNT array after synthesis and a subsequent functionalization was characterized using scanning electron microscopy (SEM, Hitachi S-4700).


## 2.2. Atomic Force Microscopy Imaging

All images of CNT were acquired using a tapping mode at the scanned location. The SPM-based measurement was performed using Innova (Veeco Inc., Santa Barbara, CA, USA) with Nanocontroller V (Veeco Inc.) under an ambient condition at room temperature. To obtain images, we have utilized TESP-V2 tip (Veeco Inc.) as a scanning probe. Here, TESP-V2 tip has the normal resonant frequency of 320 kHz and tip radius of ~8 nm. The tapping mode AFM (tmAFM) images were acquired based on scanning speed of 1μm/s, which is suitable to guarantee the high-quality images. We obtained the tmAFM images for the scan size of 2 μm × 2 μm, which is a proper scan size to image a couple of CNTs on the substrate. All SPM images were generated from Nanoscope software V7.2.


## 2.3. Raman Spectroscopy

The degree of the functionalization of the HACNT array with NH2-diazonium and RITC was characterized using Raman spectroscopy (WITec, Alpha 300 M+, 532 nm laser excitation, and 300 nm spatial resolution). In particular, Raman spectra of the sample were obtained after the sample was fully dried at room temperature. Raman mapping was carried out with a spectral area of 10 × 10 μm2 using a customized built-in software, where points per line and scan speed were 100 and 13 seconds/line, respectively.


## 3. Results and Discussion

Figure1(a) shows a schematic illustration of a horizontally aligned carbon nanotube (HACNT) array on a SiO2/Si substrate grown by chemical vapor deposition (CVD) method. In the case of HACNT array growth, individual carbon nanotubes are generally known to get nucleated from catalyst metals prepatterned at the one end of the substrate and then subsequently extend their length with a process time through thekite mechanism by which carbon nanotubes being grown are floating above the underlying substrate in the same direction with feedstock gas flow injected into a reactor during synthesis [19]. Figure 1(b) depicts a schematic diagram representing a process of surface functionalization of individual carbon nanotubes of the HACNT array with NH2-diazonium after the array synthesis and then subsequent RITC functionalization. The amine groups functionalized on the outer surface of carbon nanotubes are generally expected to act as an electron donor to give electrons towards the nanotube because of their relatively high reduction potential over the valence band of the semiconducting single-walled carbon nanotubes [20, 21]. In addition, the NH2-diazonium functionalization on the nanotubes would allow mediation of a further functionalization of RITC on the NH2-diazonium functionalized nanotube assembly by replacing NH2-group with RITC, which exhibits fluorescence in the visible light wavelength regime [22].Figure 1
Schematic illustrations of (a) fabrication of a horizontally aligned carbon nanotube (HACNT) array by chemical vapor deposition (CVD) method on a Si substrate and (b) subsequent functionalization of HACNT with NH2-diazonium, followed by rhodamine dye moieties.
(a)
(b)Scanning electron microscopic (SEM) images of the HACNT arrays are shown in Figure2, where the effect of total flow rate of feedstock gases during the synthesis on the growth morphology and density of the arrays is provided when a relative flow rate ratio of hydrogen (H2) and methane (CH4) gas was kept constant as two. In each subset of the Figure 2, the left (or right) image shows the appearance of the nanotubes in the array grown near (or far away from) the Fe catalyst metal in the nanotube growth region, which is indicated by a red arrow in an upper-left panel of the Figure 2. As total flow rate of the feedstock gases was increased from 4.5 to 9.0 stand cubic centimeter (SCCM), the growth density of each sample was found to be different although the morphologies seemed to be similar (Figures 2(a)–2(d)). Interestingly, when the total flow rate was 9 SCCM (Figure 2(d)), it was hard to find the initial nucleation of the nanotubes allowing their substantial growth afterwards. This result would be possibly because the hydrogen atoms could either etch away the carbon atoms, which are thermally dissociated from CH4 feedstock gas, or replace the dangling bonds of the carbon atoms prior to forming a normal nanotube structure [23]. It is expected that there would be a certain total flow rate that corresponds to the optimal quantity making the nanotubes initiate their growth even if a relative flow rate ratio of the feedstock gases was maintained to be constant. Otherwise, the growth of the HACNT array would be deactivated (Figure 2(d)).Figure 2
Scanning electron microscopy (SEM) images representing an effect of total flow rate (in unit of standard cubic centimeter (SCCM)) of feedstock gases while maintaining a relative flow rate ratio of H2 and CH4, which is two, during HACNT arrays growth on their morphologies and densities. Total flow rate varies at (a) 4.5, (b) 6.0, (c) 7.5, and (d) 9.0, respectively. Note that no tubes were nearly grown at the total flow rate of 9.0. Left (or right) image of each subfigure set corresponds to a regime of the array grown near (or far from) Fe catalyst in the growth direction.
(a)
(b)
(c)
(d)To determine the effect of the relative flow rate ratio of H2 and CH4 compared to the result shown in Figure 2, where the flow ratio is two, the flow ratio using the same gases was slightly decreased to one and a half (Figure 3). Then, as similarly shown in Figure 2, we have systematically increased the total flow rate of the feedstock gases from 3.75 to 7.5 SCCM (Figures 3(a)–3(c)). In this case, the flow rate of H2 gas injected was reduced by 75% at a given flow rate of CH4 gas as compared with that in Figure 2. As the total flow rate was increased (Figures 3(a)–3(c)), the morphology and density of the HACNT arrays were markedly changed as compared with the result shown in Figure 2. More specifically, when the total flow rate was increased from 3.75 SCCM (Figure 3(a)) to 6.25 SCCM (Figure 3(b)) by a factor of ~1.7, it was observed that the surface of the carbon nanotubes in the array grown was covered by a large amount of the amorphous-like carbon. This morphological appearance is quite obviously compared with that shown in Figure 2, where the same amount of the total flow rate was increased (Figures 2(a) and 2(c)). Moreover, when the total flow rate was increased to 7.5 SCCM, which equals an increase by a factor of 2 compared to that shown in Figure 3(a), the HACNT array was found to be rarely grown, and most of the substrate seemed to be coated with thick layers of the amorphous-like carbon. In brief, with the results of Figures 2 and 3 mentioned above, the mechanism of patterned carbon nanotube growth can be described as follows: if the relative flow rate ratio of H2 and CH4 is decreased by a certain percentage (despite the total flow rates of feedstock gases injected into a reactor being the same), the carbon atoms produced from CH4 gas would not be able to properly form a lattice structure of the carbon nanotube due to decrease in numbers of the hydrogen atoms created from H2 gas, which are supposed to act asscavengers for the carbon atoms in the gas phase reaction [24].Figure 3
SEM images indicating an effect of a different relative flow rate of H2 and CH4 gases, which is one and a half, compared to the results of Figure 2, on the morphologies and densities of HACNT arrays grown with the total flow rates of (a) 3.75, (b) 6.25, and (c) 7.5, respectively. Note that few tubes were grown and covered with amorphous-like carbon debris at the total flow rate of 7.5.
(a)
(b)
(c)Figure4 shows AFM images of the HACNT-patterned surface. As shown in Figure 4, the diameter of CNT horizontally grown on the surface is found to be ~1.7 nm. Here, we note that CNT horizontally grown on the surface was fabricated based on the optimal synthesis condition as described above.Figure 4
Atomic force microscopy (AFM) images of a representative HACNT array.Figure5 depicts the results of 1-dimensional (1D) spectra and 2-dimensional (2D) mapping images from Raman spectroscopy on the samples that were prepared as schematically shown in Figure 1(b). Specifically, the Raman images were shown for a pristine CNT (Figures 5(a)–5(c)), CNT functionalized with NH2-diazonium (Figures 5(d)–5(f)), and CNT chemically modified with RITC molecules (Figures 5(g)–5(i)), respectively. In Raman spectroscopy, the G-band corresponds to planar vibrations of carbon atoms and is present in most graphite-like materials. The D-band is present in all graphite-like carbons and originates from structural defects. The radial breathing mode (RBM) corresponds to radial expansion-contraction of the nanotube. And the G′-band arises from a two-phonon, intervalley, second-order Raman scattering process [25, 26]. From these images, we have the following observations: first, when the carbon nanotubes in the HACNT array were functionalized with NH2-diazonium, the overall G-band intensities decreased over the whole spectral regime investigated, compared to the bare ones (Figures 5(a) and 5(d)). However, the number density of bright spots in the D-band images (Figures 5(b) and 5(e)) increased, which would probably correspond to the region with NH2-diazonium functionalization. These results indicate that the NH2-diazonium functionalization would create the defect sites on the surface of carbon nanotubes. Overall, both the G-band and D-band images (Figures 5(g) and 5(h)) of the carbon nanotubes functionalized with NH2-diazonium and a subsequent RITC molecules show lower spectral intensities compared to those mentioned above. A possible reason for this would be a large amount of loss of the carbon nanotubes during the RITC functionalization. But it is still observed that the D-band intensities in some of the regions (Figure 5(h)) became brighter than in those shown in Figure 5(e), revealing the higher degree of the functionalization. The NH2-diazonium and a subsequent functionalization of RITC molecules on the carbon nanotubes seem to produce the RBM images with little difference. Figure 5(j) depicts the representative three 1D Raman spectra of each sample discussed above. Interestingly, it was observed that the D-/G-band intensity ratio increased, and the G′-band position downshifted (~15–20 cm−1) with both NH2-diazonium and RITC functionalization (the resolution of the system was ~1 cm−1). It should be noted here that the functionalization of CNT surface with NH2-diazonium would probably act as a defect site onto a SWNT surface, which makes the D-/G-band intensity ratio increase in the Raman spectra. Furthermore, the reason for both G-band and G′-band can be attributed to the fact that NH2-diazonium functionalization would donate electrons into carbon atom (n-doped) in a SWNT; therefore the carbon-carbon (C-C) bond at the edge of a SWNT would become extended which would directly cause the Raman softening (i.e., Raman downshift) [20, 27].Figure 5
2D Raman mapping images recorded at ((a), (b), (c)) intact individual carbon nanotubes in the HACNT array, ((d), (e), (f)) the same tubes functionalized with NH2-diazonium, and ((g), (h), (i)) the same tubes functionalized with NH2-diazonium/rhodamine dye in sequence. All scale bars represent 2 μm. (j) Three Raman spectra for each sample are depicted, indicating radial breathing mode (RBM), D-band, G-band, and G′-band.
(a)
(b)
(c)
(d)
(e)
(f)
(g)
(h)
(i)
(j)


## 4. Conclusion

In this work, we have determined optimal synthetic conditions of the CNT horizontally aligned on the surface with quantity control of the mixed gases of H2 and CH4 injected. It was revealed that the formation of amorphous-like carbon was critically affected by gas condition such as the flow rate of injected gases and ratios of gas mixture. It is expected that the optimal synthetic conditions studied in this work enable us to prepare the high-quality CNT-patterned surface, which may be employed for selective and sensitive biosensing applications. In addition, it should be noted that the HACNT array platform developed in this work would offer another potential in developing nanoscale light source, where light emission results from electron-hole carrier recombination. This property should enable electroluminescence (EL) in the array, which can detect subtle changes from the environments (i.e., biological and chemical). This implies that CNT-patterned surface described in this work can be considered for establishing a nanoscale optical device. Our study may provide insight into optimization of the synthesis of the HANCT array, which enables not only highly sensitive detection platforms for sensing diseases-related biomolecules, but also a new type of nanoscale light source that are able to detect environmental changes. Future work will be directed towards further development of HACNT-based biosensing platform, which may allow for diagnosis of fatal diseases such as cancer.



---

*Source: 5140241-2016-06-30.xml*