# MicroRNA 101 Attenuated NSCLC Proliferation through IDH2/HIFα Axis Suppression in the Warburg Effect

Authors: Le Han; Yili Zhang; Bin Zhao; Jianren Yue; Zhenghong Chen; Guangyan Lei; Chen Huang; Wenjuan Chen
Journal: Oxidative Medicine and Cellular Longevity
 (2022)

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## Abstract

Lung cancer is the most diagnosed and deadly cancer in China. MicroRNAs are small noncoding RNA gene products that exhibit multifunctional regulation in cancer cell progressions. MiR-101 loss was illustrated in about 29% of lung cancer patients, and sophisticated mechanisms of miR-101 regulation in NSCLC are eager to be disclosed. Here, using specimens from NSCLC patients and Dural-luciferase reporter assay, we got a clue that miR-101 correlated with IDH2. MiR-101 overexpression and IDH2 deficiency both suppressed NSCLC tumor growth in mice. Moreover, in NSCLC, miR-101 suppressed IDH2 expression levels, further increasedα-KG concentration, and finally inhibited the Warburg effect under hypoxic conditions through downregulating HIF1α expression by promoting HIF1α hydroxylation and degradation. In conclusion, miR-101 attenuated the Warburg effect and NSCLC proliferation through IDH2/HIF1α pathway.


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## Body

## 1. Introduction

As a global health problem, lung cancer is the most diagnosed (0.82 million) and deadly cancer (0.72 million) in China in 2020 [1]. Among the lung cancer patients, about 85% belong to nonsmall cell lung cancer (NSCLC), which includes lung adenocarcinoma (LUAD), lung squamous cell carcinoma (LUSC), and large cell carcinoma histologic subtypes [2, 3]. With current anticancer therapies, we still need to put more effort into finding new ways to prolong the overall survival of NSCLC patients.MicroRNAs are small noncoding RNA gene products with 22 nt. MicroRNAs regulate biological processes by regulating the translation and degradation of target mRNAs [4, 5]. There are four different types of miRNAs based on their location: intronic miRNAs in coding transcription units, exonic miRNAs in coding transcription units, intronic miRNAs in noncoding transcription units, and exonic miRNAs in noncoding transcription units [6]. MicroRNA 101 (miR-101) has two copies in the human genome, 1p31.3 (miR-101-1) and 9p24.1 (miR-101-2) [7]. MiR-101 exhibited downregulated expression levels in the cancers, such as lung cancer [8].In hepatocellular carcinoma (HCC), miR-101-3p was demonstrated to suppress glycogen phosphorylase B (PYGB) expression posttranscriptionally to finally decrease cell proliferation, migration, and invasion [9]. In cardiovascular diseases, the use of mimic miR-101 could reduce COX-2 protein expression, which is highly expressed in cardiovascular diseases, by promoting mir-101 production [10]. Besides, in cancer pharmacotherapy, miR-101 could impair proteasome assembly and activity by interacting with POMP, a protein that is related to proteasome maturation [11]. Mir-101 was also reported to function as an inhibitor in autophagy [12], promoted anticancer drug toxicity [13], and inhibited postinfarct cardiac fibrosis [14].In lung cancer patients, about 29% exhibited loss of miR-101 [15] and researchers have demonstrated that miR-101 plays an important role in NSCLC. MiR-101 is located in the middle of the regulatory pathways. One study illustrated that miR-101 could suppress DNMT3a levels and DNA methylation to inhibit lung tumorigenesis in cell lines and patient tissues [16]. In the same year, Wang et al. showed that IL-1β accelerated NSCLC proliferation and migration by suppressing miR-101 expression through the COX2-HIF1α signaling pathway, which indicated the correlation between HIF1α and miR-101 in NSCLC [17]. Shao et al. suggested that by attenuating miR-101 expression, exosome circ_PIP5K1A promoted NSCLC progression [18]. In 2018, Han et al. outlined that miR-101 negatively regulated NSCLC cell proliferation, invasion, and lymph node metastasis in mice and NSCLS patients. The function of miR-101 was achieved by directly downregulating zinc finger E-box binding homeobox 1 expression [19]. The newest research on miR-101 in NSCLC suggests that reduced miR-101 could promote CERS6 expression by luciferase analysis and NSCLC profile [20]. Based on the researches above, we hypothesized that there may be other mechanisms of miR-101 on NSCLC regulation.Warburg’s theory refers to metabolic reprogramming in cancer cells. Even with enough oxygen, cancer cells still were characterized by high glucose uptake rate, active glycolysis, and high content of lactic acid [21]. Although the efficiency of ATP is relatively low produced by aerobic glycolysis, it can meet the rapid supply of tumor cells due to the short overall process of glycolysis [22]. Isocitrate dehydrogenase (IDH) are enzymes that are critical in the tricarboxylic acid (TCA) cycle. IDH2 plays an indispensable role in the Warburg effect [23, 24]. IDH2 is one of the isoforms which locates in the mitochondria [25] and turns the oxidative decarboxylation of isocitrate into α-ketoglutarate (α-KG) and CO2 or the reverse function [26]. For example, silencing of IDH2 impaired oxidative bioenergetics, elevated reactive oxygen species (ROS) production, and promoted exaggerated mitochondrial dynamics in prostate cancer cells [27]. In addition, IDH2 could further catalyze the carboxylation of α-KG into citrate, leading to a reduced α-KG concentration [28]. α-KG was reported to exhibit antitumor effects through inhibition of angiogenesis in mice models [29]. α-KG was a substrate of the α-KG-dependent dioxygenases, including KDM, TET2, PHD2, and PLOD1-3, which control histone demethylation and HIF1α-dependent cellular signaling and collagen formation [30]. HIF1α is broadly expressed and correlates with poor prognosis in human cancers by regulating genes involved in glycolysis, angiogenesis, cell cycle progression, and other cellular pathways [31]. Studies demonstrated that IDH2/HIF1α pathway was responsible for cancer proliferation, such as cervical cancer [23] and lung cancer [26].In this study, we made an attempt to explore the new mechanisms of miR-101 regulation in NSCLC. The dual-luciferase analysis suggested that miR-101 may target IDH2. We utilized in vivo assay to evaluate the tumor growth of NSCLC cells overexpressed with miR-101 or IDH2 deficiency. We also investigated the influence of miR-101 on the IDH2 expression levels and downstreamα-KG concentration. Because IDH2 was critical in the Warburg effect and α-KG concentration was vital for HIF1α hydroxylation, we then evaluated the influences of miR-101 on NSCLC metabolism and HIF1α expression and hydroxylation. Taken together, we concluded that miR-101 attenuated NSCLC proliferation by accelerating HIF1α hydroxylation and degradation. These discoveries implicated the new mechanism of miR-101 in NSCLC and may provide new targets for NSCLC therapies.


## 2. Materials and Methods

### 2.1. Clinical Samples

Lung cancer tissues and corresponding adjacent tissues were obtained as mentioned before [19]. NSCLC patients enrolled without chemotherapy or radiotherapy before surgery. The surgery was conducted at the Shaanxi Provincial Cancer Hospital, affiliated to the Medical College of Xi’an Jiaotong University. All the fresh samples were collected at the time of surgery and rapidly frozen from 2019.1 to 2021.5. The details of the patient included in this study were listed in Supplementary Table 1. This study was approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019).


### 2.2. Mice Model

Severe combined immunodeficiency (SCID) mice (male, 4 weeks) were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd. and then kept under aseptic conditions. The experiments were approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019). 12 SCID mice were equally assigned into 4 groups randomly. Lentivirus transfected pre-miR-101-A549-luc cells (miR-101), shIDH2-A549-luc cells (shIDH2), miR-NC-A549-luc cells (miR-NC), pre-miR-101-H460-luc cells (miR-101), shIDH2-H460-luc cells (shIDH2), and miR-NC-H460-luc cells (miR-NC) were subcutaneously injected into SCID mice by1×106 per mouse. 150 mg/kg fluorescein was injected intraperitoneally at 2, 4, and 6 weeks after tumor cells injection. Mice were photographed with a Xenogen IVIS imaging system, the tumor sizes and volumes were analyzed, and the tumor growth curve was depicted. The nude mice were sacrificed at 8 weeks.


### 2.3. Cell Culture

We obtained 293 T cells from our lab, and we purchased A549 and H460 human NSCLC cell lines from American Type Culture Collection (Manassas, VA, USA). Cells were cultured in RPMI 1640 medium with 10% fetal bovine serum (FBS, Gibco), penicillin (100 U/mL), and streptomycin (100 U/mL) at 37°C in 5% CO2.We cocultured A549 and H460 cells with Cycloheximide (400μM, HY-12320, MedChemExpress, USA) for 2 hours or PX-478 (10 μM, HY-10231, MedChemExpress, USA) for 24 hours, or α-KG (1 mM, 75890, Sigma, USA) for 24 hours before subsequent examinations.


### 2.4. Real-Time Quantitative PCR (RT-qPCR)

Cells and tissues were collected and dissolved in Trizol for RNA extraction. Total RNAs were reversed into cDNA by commercial kit according to the manufacturer’s instructions (SuperScript III RT, Invitrogen, USA). cDNAs were amplified by the SYBR system (Invitrogen, USA). The expression levels of mRNAs and miRNAs were calculated by the 2-ΔΔt method. The β-actin and U6 were treated as internal controls. The primers for RT-qPCR were listed in Table 1.Table 1
RT-qPCR primer sequences.
GeneForward (5′-3′)Reverse ((5′-3′))IDH2CGCCACTATGCCGACAAAAGACTGCCAGATAATACGGGTCAHIF1αGAACGTCGAAAAGAAAAGTCTCGCCTTATCAAGATGCGAACTCACAU6CGATACAGAGAAGATTAGCATGGATATGGAACGCTTCACGAAmiR-101ACGGGCGAGCTCAGTACTGTGCCAGTGCAGGGTCCGAGCTAActinGACAGGATGCAGAAGGAGATTACTTGATCCACATCTGCTGGAAGGT


### 2.5. Western Blot Analysis

Tissues were homogenized with liquid nitrogen. Cells and tissues were then lysed by lysis buffer for 10 min on ice and then, centrifuged at 12,000 rpm for 15 min at 4°C. Supernatants were mixed with loading buffer and underwent SDS-PAGE to separate proteins. Proteins were then transferred into the PVDF membrane. The membranes were blocked by 5% nonfat milk in Tris-buffered saline (TBS) and then, incubated with anti-β-Actin (1 : 1000, ab6276, Abcam, USA), anti-HIF1α (1 : 500, ab179483, Abcam, USA), anti-IDH2 antibodies (1 : 500, ab131263, Abcam, USA), and anti-Hydroxy-HIF1α (1 : 500, 3434, Cell Signaling Technology, USA) at 4°C overnight. After being washed for 3 times by 0.5% TBST, membranes were incubated with second antibodies at a dilution of 1 : 4000 at room temperature for 2 hours then washed by 0.5% TBST for 3 times. Blots were then quantified by electrochemiluminescence and visualized by Gel Imaging System (GelDoc-It310, UVP, USA).


### 2.6. Dual-Luciferase Reporter Assay

The Dual-luciferase reporter assay was conducted as mentioned before [18]. Plasmids expressing miR-NC plus pGL3-IHD2-3′-UTR-WT, miR-NC plus pGL3-IHD2-3′-UTR-MU, miR-101 mimics plus pGL3-IHD2-3′-UTR-WT, or miR-101 mimics plus pGL3- IHD2-3′-UTR-MU were cotransfected with 293 T cells and cultured for 48 hours. Cells were lysed by lysis buffer for 15 minutes. Take 20 μl cell lysate and add it to the black enzyme label plate. Add 100 μl firefly luciferase reaction solution, shake the plate, and mix well to detect the activity of firefly luciferase. Add 100 μl of sea kidney luciferase reaction solution, mix well with a shaking plate, and detect the activity of sea kidney luciferase.


### 2.7. Construction of Stable Cell Lines

Plasmids miR-101 mimic, miR-NC mimic, miR-101 mimic plus pUNO1-hIDH2, miR-NC mimics plus pUNO1-hIDH2, or pUNO1-hIDH2 along were cotransfected with A549 or H460 cells for 48 hours. Cells that survived 16 days of puromycin (200μg/ml) were screened for mRNA expression by RT-qPCR.


### 2.8. Flow Cytometry for ROS

1×106 cells were collected and washed by PBS for 3 times followed by dihydroethidium (MedChemExpress, USA) (1 μM) coculture for 30 minutes. The ROS levels of cells were examined by BD FACSCanto™ II flow cytometer (BD Biosciences), which were analyzed using FlowJo 10.4 software.


### 2.9. Biochemical Analysis

The production of ATP (Cat No: BC0300, Solarbio, China), LA (Cat No: BC2235, Solarbio, China), glucose (Cat No: BC2505, Solarbio, China), andα-KG (Cat No: ab83431, Abcam, USA) were conducted according to the manufacturer’s instructions.


### 2.10. Immunohistochemistry Analysis

Lung cancer tissues were from the Shaanxi Provincial Cancer Hospital, affiliated to the Medical College of Xi’an Jiaotong University. The study protocol was approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019). Lung cancer tissues were fixed with 4% formaldehyde, embedded in paraffin, and sectioned. After the antigens were retrieved by antigen retrieval buffer, endogenous peroxidase activity was blocked by hydrogen peroxide (0.3%). The slides were stained with anti-IDH2 antibodies (1 : 200, ab131263, Abcam, USA), followed by incubation with a horseradish peroxidase-conjugated second antibody (1 : 1000, ab6721, Abcam, USA). Color was developed with diaminobenzidine and sections were counterstained with hematoxylin.


### 2.11. Statical Analysis

Statistical analysis was analyzed by GraphPad Prism 8.0 (GraphPad Software, USA) software. The significance was performed by either one-way analysis of variance (ANOVA) or unpaired, two-tailed Studentt-test. For all tests, p≤0.05 was considered to be statistically significant. Each experiment was repeated for 3 times, and results were presented as mean±SD.


## 2.1. Clinical Samples

Lung cancer tissues and corresponding adjacent tissues were obtained as mentioned before [19]. NSCLC patients enrolled without chemotherapy or radiotherapy before surgery. The surgery was conducted at the Shaanxi Provincial Cancer Hospital, affiliated to the Medical College of Xi’an Jiaotong University. All the fresh samples were collected at the time of surgery and rapidly frozen from 2019.1 to 2021.5. The details of the patient included in this study were listed in Supplementary Table 1. This study was approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019).


## 2.2. Mice Model

Severe combined immunodeficiency (SCID) mice (male, 4 weeks) were purchased from Beijing Vital River Laboratory Animal Technology Co., Ltd. and then kept under aseptic conditions. The experiments were approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019). 12 SCID mice were equally assigned into 4 groups randomly. Lentivirus transfected pre-miR-101-A549-luc cells (miR-101), shIDH2-A549-luc cells (shIDH2), miR-NC-A549-luc cells (miR-NC), pre-miR-101-H460-luc cells (miR-101), shIDH2-H460-luc cells (shIDH2), and miR-NC-H460-luc cells (miR-NC) were subcutaneously injected into SCID mice by1×106 per mouse. 150 mg/kg fluorescein was injected intraperitoneally at 2, 4, and 6 weeks after tumor cells injection. Mice were photographed with a Xenogen IVIS imaging system, the tumor sizes and volumes were analyzed, and the tumor growth curve was depicted. The nude mice were sacrificed at 8 weeks.


## 2.3. Cell Culture

We obtained 293 T cells from our lab, and we purchased A549 and H460 human NSCLC cell lines from American Type Culture Collection (Manassas, VA, USA). Cells were cultured in RPMI 1640 medium with 10% fetal bovine serum (FBS, Gibco), penicillin (100 U/mL), and streptomycin (100 U/mL) at 37°C in 5% CO2.We cocultured A549 and H460 cells with Cycloheximide (400μM, HY-12320, MedChemExpress, USA) for 2 hours or PX-478 (10 μM, HY-10231, MedChemExpress, USA) for 24 hours, or α-KG (1 mM, 75890, Sigma, USA) for 24 hours before subsequent examinations.


## 2.4. Real-Time Quantitative PCR (RT-qPCR)

Cells and tissues were collected and dissolved in Trizol for RNA extraction. Total RNAs were reversed into cDNA by commercial kit according to the manufacturer’s instructions (SuperScript III RT, Invitrogen, USA). cDNAs were amplified by the SYBR system (Invitrogen, USA). The expression levels of mRNAs and miRNAs were calculated by the 2-ΔΔt method. The β-actin and U6 were treated as internal controls. The primers for RT-qPCR were listed in Table 1.Table 1
RT-qPCR primer sequences.
GeneForward (5′-3′)Reverse ((5′-3′))IDH2CGCCACTATGCCGACAAAAGACTGCCAGATAATACGGGTCAHIF1αGAACGTCGAAAAGAAAAGTCTCGCCTTATCAAGATGCGAACTCACAU6CGATACAGAGAAGATTAGCATGGATATGGAACGCTTCACGAAmiR-101ACGGGCGAGCTCAGTACTGTGCCAGTGCAGGGTCCGAGCTAActinGACAGGATGCAGAAGGAGATTACTTGATCCACATCTGCTGGAAGGT


## 2.5. Western Blot Analysis

Tissues were homogenized with liquid nitrogen. Cells and tissues were then lysed by lysis buffer for 10 min on ice and then, centrifuged at 12,000 rpm for 15 min at 4°C. Supernatants were mixed with loading buffer and underwent SDS-PAGE to separate proteins. Proteins were then transferred into the PVDF membrane. The membranes were blocked by 5% nonfat milk in Tris-buffered saline (TBS) and then, incubated with anti-β-Actin (1 : 1000, ab6276, Abcam, USA), anti-HIF1α (1 : 500, ab179483, Abcam, USA), anti-IDH2 antibodies (1 : 500, ab131263, Abcam, USA), and anti-Hydroxy-HIF1α (1 : 500, 3434, Cell Signaling Technology, USA) at 4°C overnight. After being washed for 3 times by 0.5% TBST, membranes were incubated with second antibodies at a dilution of 1 : 4000 at room temperature for 2 hours then washed by 0.5% TBST for 3 times. Blots were then quantified by electrochemiluminescence and visualized by Gel Imaging System (GelDoc-It310, UVP, USA).


## 2.6. Dual-Luciferase Reporter Assay

The Dual-luciferase reporter assay was conducted as mentioned before [18]. Plasmids expressing miR-NC plus pGL3-IHD2-3′-UTR-WT, miR-NC plus pGL3-IHD2-3′-UTR-MU, miR-101 mimics plus pGL3-IHD2-3′-UTR-WT, or miR-101 mimics plus pGL3- IHD2-3′-UTR-MU were cotransfected with 293 T cells and cultured for 48 hours. Cells were lysed by lysis buffer for 15 minutes. Take 20 μl cell lysate and add it to the black enzyme label plate. Add 100 μl firefly luciferase reaction solution, shake the plate, and mix well to detect the activity of firefly luciferase. Add 100 μl of sea kidney luciferase reaction solution, mix well with a shaking plate, and detect the activity of sea kidney luciferase.


## 2.7. Construction of Stable Cell Lines

Plasmids miR-101 mimic, miR-NC mimic, miR-101 mimic plus pUNO1-hIDH2, miR-NC mimics plus pUNO1-hIDH2, or pUNO1-hIDH2 along were cotransfected with A549 or H460 cells for 48 hours. Cells that survived 16 days of puromycin (200μg/ml) were screened for mRNA expression by RT-qPCR.


## 2.8. Flow Cytometry for ROS

1×106 cells were collected and washed by PBS for 3 times followed by dihydroethidium (MedChemExpress, USA) (1 μM) coculture for 30 minutes. The ROS levels of cells were examined by BD FACSCanto™ II flow cytometer (BD Biosciences), which were analyzed using FlowJo 10.4 software.


## 2.9. Biochemical Analysis

The production of ATP (Cat No: BC0300, Solarbio, China), LA (Cat No: BC2235, Solarbio, China), glucose (Cat No: BC2505, Solarbio, China), andα-KG (Cat No: ab83431, Abcam, USA) were conducted according to the manufacturer’s instructions.


## 2.10. Immunohistochemistry Analysis

Lung cancer tissues were from the Shaanxi Provincial Cancer Hospital, affiliated to the Medical College of Xi’an Jiaotong University. The study protocol was approved by the Biomedical Ethics Committee, School of Medicine, Xi’an Jiaotong University (Approval No: 2019-622, Date: February 8, 2019). Lung cancer tissues were fixed with 4% formaldehyde, embedded in paraffin, and sectioned. After the antigens were retrieved by antigen retrieval buffer, endogenous peroxidase activity was blocked by hydrogen peroxide (0.3%). The slides were stained with anti-IDH2 antibodies (1 : 200, ab131263, Abcam, USA), followed by incubation with a horseradish peroxidase-conjugated second antibody (1 : 1000, ab6721, Abcam, USA). Color was developed with diaminobenzidine and sections were counterstained with hematoxylin.


## 2.11. Statical Analysis

Statistical analysis was analyzed by GraphPad Prism 8.0 (GraphPad Software, USA) software. The significance was performed by either one-way analysis of variance (ANOVA) or unpaired, two-tailed Studentt-test. For all tests, p≤0.05 was considered to be statistically significant. Each experiment was repeated for 3 times, and results were presented as mean±SD.


## 3. Results

### 3.1. miR-101 Might Regulate IDH2 in NSCLC

To investigate the undiscovered function of miR-101 in NSCLC, we measured mRNA expression of miR-101 using the fresh tumor samples and adjacent normal tissues collected after surgery. MiRNA-101 levels were downregulated in NSCLC tissues compared with adjacent normal tissues (Figure1(a)) which were unanimous in a study on NSCLC [20, 32, 33]. Similar circumstances were shown in tumor A549 cells and normal lung cell lines NL20 (Figure 1(a)).Figure 1
miR-101 and IDH2 expression and correlation. (a) miR-101 (left) and IDH2 mRNA (right) expression in tissues and cell lines. (b) Dural- luciferase reporter assay of miR-101 and IDH2. (c) Complemental conditions among miR-101, wild-type IDH2 and mutational IDH2.∗p<0.05, ∗∗∗∗p<0.0001.
(a)(b)(c)We also examined the critical protein IDH2 in cancer metabolism. Tumor tissues expressed lower levels of miR-101 than adjacent normal tissues and a higher amount of IDH2 (Figure1(a)), which are in line with the literature that IDH2 was overexpressed in lung cancer [26, 34]. NSCLC cancer cell lines were also tested in accordance with NL20 cells. The results confirm the above conclusions (Figure 1(a)). The immunohistochemical localization of IDH2 was detected in the clinical samples, showing that IDH2 was mainly expressed in the cytoplasm (Supplementary Figure 1). We hypothesized that IDH2 might be the target of miR-101 in NSCLC. To verify the assumption, we introduced Dual-luciferase reporter assay. miR-101 were cotransfected with wild type (WT) or mutational (Mut) IDH2, and the sequences and complemental conditions were shown (Figure 1(c)). Data suggested that miR-101 significantly attenuated wild type IDH2 function without affecting mutational IDH2 (Figure 1(b)). The findings above implied that miR-101 plays a role in NSCLC by targeting wild-type IDH2.


### 3.2. MiR-101 Inhibited NSCLC Tumor Growth in Mice Models

In the previous section, we proposed that miR-101 regulates NSCLC in some aspects. To be certain, we traced the volume of tumors in SCID mice transfected with NSCLC cell lines A549-luc or H460-luc. Mice were photographed with a Xenogen IVIS imaging system every two weeks before sacrifice (Figures2(a) and 2(b)). Before transfer, A549-luc and H460-luc cells were intervened by miR-NC or miR-101 overexpression. The volume of the tumor at every time point compared to the NC group significantly was reduced (Figures 2(c) and 2(d)). After being sacrificed at 8 weeks, tumors were photographed and weighted. Pictures and weights both indicated smaller cancer tissues (Figures 2(e) and 2(f)). Mice data make it clear that miR-101 restrains NSCLC proliferation.Figure 2
Overexpression of miR-101 or IDH2 deficiency suppressed NSCLC proliferation in mice. (a, b) SCID mice were photographed by luciferase imaging at 2 weeks, 4 weeks, and 6 weeks after transferred with A549-luc (a) and H460-luc (b). (c, d) Tumor volumes were measured by the xenografts system of A549-luc cells (c) and H460-luc cells (d). (e, f) Mice were sacrificed at 8 weeks after lung cells injection. Tumors were photographed (left) and weighted (right) of A549-luc cells (e) and H460-luc cells (f).∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)Correlations between miR-101 and IDH2 were demonstrated by Dural-luciferase reporter assay (Figure1(b)). In this part, we explored the effects of IDH2 deficiency on NSCLC proliferation in SCID mice model. Corresponding to miR-101, IDH2 deficiency in A549-luc and H460-luc cells retarded NSCLC growth by exhibiting smaller tumor volumes (Figures 2(a)–2(d)) and lighter weight (Figures 2(e) and 2(f)), which was consistent with the references that IDH2 deficiency resulted in the attenuation of lung cancer cell proliferation and tumor growth [26]. We inferred that IDH2 accelerated NSCLC proliferation and miR-101 might act through downregulated IDH2 expression.


### 3.3. MiR-101 Regulates NSCLC Metabolism through HIF1α

To explore the mechanisms of miR-101 regulating NSCLC proliferation through IDH2, we overexpressed miR-101 and IDH2 in A549 and H460 cell lines separately. First, we analyzed the mutual influence between the two by RT-qPCR assay. Overexpression of IDH2 hardly influenced miR-101 levels in both A549 and H460 cells, but overexpression of miR-101 interfered with IDH2 mRNA expression in both A549 and H460 cells (Figures3(a) and 3(b)). For further confirmation, IDH2 protein production was determined by western blot analysis. We can see that overexpression of miR-101 reduced the IDH2 expression levels compared with control (Figure 3(c) and Supplemental Figure 2 (a)). We concluded from the above data that miR-101 regulated NSCLC proliferation by modulating IDH2 expression.Figure 3
miR-101 regulated NSCLC metabolism through IDH2/HIF1α pathway. (a, b) The expression levels of miR-101, IDH2, and HIF1α were measured by RT-qPCR in stable A549 (a) and H460 (b) cells. (c) The expression levels of IDH2, HIF1α and HIF1α hydroxylation were measured by western blot analysis. (e) ATP concentrations of A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (f) LA concentrations in A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (g) Glucose concentrations in A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (h) ROS levels of A549 cells (left) and H460 cells (right) were measured by flow cytometry analysis. ∗p<0.05, ∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)(g)(h)To verify whether miR-101 regulated NSCLC through IDH2, because IDH2 could further catalyze the carboxylation ofα-KG into citrate, leading to the reduced α-KG concentration [28], we first measured α-KG concentrations in A549 and H460 cells. Compared with the NC group, miR-101 promoted α-KG production but IDH2 alone and IDH2 plus miR-101 suppressed α-KG levels (Figure 3(d)), which was reported in previous studies [35–37]. These data are affiliated to prove that miR-101 regulated NSCLC through IDH2. To elucidate the relationships between miR-101 and IDH2/HIF1α pathway, we first measured the expression levels of HIF1α by RT-qPCR analysis. As data showed, HIF1α mRNA levels were unchanged when IDH2 overexpression with or without miR-101 (Figure 3(a)). But when we measured the protein levels of HIF1α and HIF1α hydroxylation by western blot analysis, the test results have shown that HIF1α was elevated with increasing IDH2 expressions and reduced hydroxylation of HIF1α (Figure 3(c) and Supplementary Figure 2(a)).To disclose the mechanism of miR-101 on the Warburg effect by IDH2/HIF1α axis, we analyzed ATP production in NSCLC cells, glucose and lactate (LA) in cell culture medium with or without the HIF1α inhibitor, PX-478. MiR-101 overexpression significantly elevated ATP summation and reduced glucose uptake and LA production compared with miR-NC (Figure 3(e)–3(g)). Plus IDH2, ATP production was suppressed (Figures 3(e) and 3(f)), and glucose uptake and LA production were elevated (Figure 3(g)), which indicated that IDH2 promoted the Warburg effect in A549 and H460 cells as demonstrated in existing studies [26, 34]. Besides, PX-478 showed a distinct effect on ATP, LA and glucose concentrations (Figures 3(e)–3(g)).Reactive oxygen species (ROS) was the byproduct of the Warburg effect which is positively related to tumor metabolism. Cancer cells do not utilize their mitochondria to the same extent and in the same way as noncancerous cells. Mitochondrial respiration is associated with the production of ROS [38]. Previous researchers discovered that IDH2 can catalyze α-ketoglutarate (α-KG) into citrate from glutamine and accelerate 2-hydroxyglutarate productions [26]. The reductive carboxylation of glutaminolysis can generate NADPH, which affiliates cellular ROS elimination.Utilizing flow cytometry, we measured ROS production in A549 and H460 cells. MiR-101 and IDH2 along both attenuated ROS proportions which implied that miR-101 and IDH2 participated in ROS production (Figure3(h) and Supplementary Figure 7 and 8). HIF1α inhibition restrained ROS levels which was in line with other studies [27]. Taken together, the data above suggested that miR-101 regulated NSCLC through IDH2/HIF1α pathway.


### 3.4. MiR-101 Modulated HIF1α Degradation

Although studies have demonstrated that IDH2/HIF1α pathway was indispensable in tumor growth [39–41], the mechanism under IDH2-HIF1α regulation kept mysterious. References demonstrated that the blocked interactions between PHD2, an α-KG-dependent dioxygenase [31], and HIF1α could inhibit the hydroxylation and degradation of HIF1α [42].We evaluated the protein levels of HIF1α after CHX treatment. Compared with the miR-NC group, miR-101 remarkably suppressed HIF1α production and IDH2 along accelerated HIF1α expression. Besides, miR-101 facilitated the IDH2-dependent HIF1α degradation (Figures 4(a) and 4(b)), which further demonstrated that IDH2 inhibited HIF1α degradation and miR-101 downregulated IDH2 functions.Figure 4
miR-101 regulated HIF1α hydroxylation and degradation. (a) HIF1α concentrations of A549 (left) and H460 (right) cells were measured by western blot after CHX treatment. (b) Statistical analysis of HIF1α concentrations of A549 (left) and H460 (right) cells measured by western blot after CHX treatment. (c) HIF1α mRNA levels were measured by RT-qPCR of A549 (left) and H460 (right) cells pretreated with α-KG or control. (d) The expression levels of HIF1α and HIF1α hydroxylation were measured by western blot analysis of A549 (up) and H460 (down) pretreated with α-KG or control. (e) HIF1α concentrations of A549 (left) and H460 (right) cells pretreated with α-KG were measured by western blot after CHX treatment. (f) Statistical analysis of HIF1α concentrations of A549 (left) and H460 (right) cells pretreated with α-KG measured by western blot after CHX treatment. ∗p<0.05, ∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)As we all know, IDH2 catalyzes isocitrate intoα-KG, which is a substrate of the α-KG-dependent dioxygenases, such as KDM, TET2, PHD2, and PLOD1-3, and controls histone demethylation and HIF1α-dependent cellular signaling and collagen formation [30]. IDH2 downregulated α-KG and promoted HIF1α-dependent signaling pathways. We appended α-KG to investigate deeply. We first measured HIF1α mRNA levels with extra α-KG. Results revealed no differences between the α-KG and control group (Figure 4(c)), which implied the HIF1α mRNA-independent mechanism. Subsequently, we analyzed the hydroxylation of HIF1α with or without α-KG by western blot assay. α-KG greatly inhibited HIF1α levels and promoted HIF1α hydroxylation (Figure 4(d) and Supplementary Figures 2(b) and (c)). After that, the changes of HIF1α protein were exhibited by CHX treatment. α-KG accelerated HIF1α degradation (Figures 4(e) and 4(f)). Taken together, the results above suggested that miR-101 inhibited NSCLC proliferation by accelerating HIF1α hydroxylation and degradation through IDH2/HIF1α axis.


## 3.1. miR-101 Might Regulate IDH2 in NSCLC

To investigate the undiscovered function of miR-101 in NSCLC, we measured mRNA expression of miR-101 using the fresh tumor samples and adjacent normal tissues collected after surgery. MiRNA-101 levels were downregulated in NSCLC tissues compared with adjacent normal tissues (Figure1(a)) which were unanimous in a study on NSCLC [20, 32, 33]. Similar circumstances were shown in tumor A549 cells and normal lung cell lines NL20 (Figure 1(a)).Figure 1
miR-101 and IDH2 expression and correlation. (a) miR-101 (left) and IDH2 mRNA (right) expression in tissues and cell lines. (b) Dural- luciferase reporter assay of miR-101 and IDH2. (c) Complemental conditions among miR-101, wild-type IDH2 and mutational IDH2.∗p<0.05, ∗∗∗∗p<0.0001.
(a)(b)(c)We also examined the critical protein IDH2 in cancer metabolism. Tumor tissues expressed lower levels of miR-101 than adjacent normal tissues and a higher amount of IDH2 (Figure1(a)), which are in line with the literature that IDH2 was overexpressed in lung cancer [26, 34]. NSCLC cancer cell lines were also tested in accordance with NL20 cells. The results confirm the above conclusions (Figure 1(a)). The immunohistochemical localization of IDH2 was detected in the clinical samples, showing that IDH2 was mainly expressed in the cytoplasm (Supplementary Figure 1). We hypothesized that IDH2 might be the target of miR-101 in NSCLC. To verify the assumption, we introduced Dual-luciferase reporter assay. miR-101 were cotransfected with wild type (WT) or mutational (Mut) IDH2, and the sequences and complemental conditions were shown (Figure 1(c)). Data suggested that miR-101 significantly attenuated wild type IDH2 function without affecting mutational IDH2 (Figure 1(b)). The findings above implied that miR-101 plays a role in NSCLC by targeting wild-type IDH2.


## 3.2. MiR-101 Inhibited NSCLC Tumor Growth in Mice Models

In the previous section, we proposed that miR-101 regulates NSCLC in some aspects. To be certain, we traced the volume of tumors in SCID mice transfected with NSCLC cell lines A549-luc or H460-luc. Mice were photographed with a Xenogen IVIS imaging system every two weeks before sacrifice (Figures2(a) and 2(b)). Before transfer, A549-luc and H460-luc cells were intervened by miR-NC or miR-101 overexpression. The volume of the tumor at every time point compared to the NC group significantly was reduced (Figures 2(c) and 2(d)). After being sacrificed at 8 weeks, tumors were photographed and weighted. Pictures and weights both indicated smaller cancer tissues (Figures 2(e) and 2(f)). Mice data make it clear that miR-101 restrains NSCLC proliferation.Figure 2
Overexpression of miR-101 or IDH2 deficiency suppressed NSCLC proliferation in mice. (a, b) SCID mice were photographed by luciferase imaging at 2 weeks, 4 weeks, and 6 weeks after transferred with A549-luc (a) and H460-luc (b). (c, d) Tumor volumes were measured by the xenografts system of A549-luc cells (c) and H460-luc cells (d). (e, f) Mice were sacrificed at 8 weeks after lung cells injection. Tumors were photographed (left) and weighted (right) of A549-luc cells (e) and H460-luc cells (f).∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)Correlations between miR-101 and IDH2 were demonstrated by Dural-luciferase reporter assay (Figure1(b)). In this part, we explored the effects of IDH2 deficiency on NSCLC proliferation in SCID mice model. Corresponding to miR-101, IDH2 deficiency in A549-luc and H460-luc cells retarded NSCLC growth by exhibiting smaller tumor volumes (Figures 2(a)–2(d)) and lighter weight (Figures 2(e) and 2(f)), which was consistent with the references that IDH2 deficiency resulted in the attenuation of lung cancer cell proliferation and tumor growth [26]. We inferred that IDH2 accelerated NSCLC proliferation and miR-101 might act through downregulated IDH2 expression.


## 3.3. MiR-101 Regulates NSCLC Metabolism through HIF1α

To explore the mechanisms of miR-101 regulating NSCLC proliferation through IDH2, we overexpressed miR-101 and IDH2 in A549 and H460 cell lines separately. First, we analyzed the mutual influence between the two by RT-qPCR assay. Overexpression of IDH2 hardly influenced miR-101 levels in both A549 and H460 cells, but overexpression of miR-101 interfered with IDH2 mRNA expression in both A549 and H460 cells (Figures3(a) and 3(b)). For further confirmation, IDH2 protein production was determined by western blot analysis. We can see that overexpression of miR-101 reduced the IDH2 expression levels compared with control (Figure 3(c) and Supplemental Figure 2 (a)). We concluded from the above data that miR-101 regulated NSCLC proliferation by modulating IDH2 expression.Figure 3
miR-101 regulated NSCLC metabolism through IDH2/HIF1α pathway. (a, b) The expression levels of miR-101, IDH2, and HIF1α were measured by RT-qPCR in stable A549 (a) and H460 (b) cells. (c) The expression levels of IDH2, HIF1α and HIF1α hydroxylation were measured by western blot analysis. (e) ATP concentrations of A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (f) LA concentrations in A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (g) Glucose concentrations in A549 cells (up) and H460 cells (down) were measured according to the manufacturer’s instructions. (h) ROS levels of A549 cells (left) and H460 cells (right) were measured by flow cytometry analysis. ∗p<0.05, ∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)(g)(h)To verify whether miR-101 regulated NSCLC through IDH2, because IDH2 could further catalyze the carboxylation ofα-KG into citrate, leading to the reduced α-KG concentration [28], we first measured α-KG concentrations in A549 and H460 cells. Compared with the NC group, miR-101 promoted α-KG production but IDH2 alone and IDH2 plus miR-101 suppressed α-KG levels (Figure 3(d)), which was reported in previous studies [35–37]. These data are affiliated to prove that miR-101 regulated NSCLC through IDH2. To elucidate the relationships between miR-101 and IDH2/HIF1α pathway, we first measured the expression levels of HIF1α by RT-qPCR analysis. As data showed, HIF1α mRNA levels were unchanged when IDH2 overexpression with or without miR-101 (Figure 3(a)). But when we measured the protein levels of HIF1α and HIF1α hydroxylation by western blot analysis, the test results have shown that HIF1α was elevated with increasing IDH2 expressions and reduced hydroxylation of HIF1α (Figure 3(c) and Supplementary Figure 2(a)).To disclose the mechanism of miR-101 on the Warburg effect by IDH2/HIF1α axis, we analyzed ATP production in NSCLC cells, glucose and lactate (LA) in cell culture medium with or without the HIF1α inhibitor, PX-478. MiR-101 overexpression significantly elevated ATP summation and reduced glucose uptake and LA production compared with miR-NC (Figure 3(e)–3(g)). Plus IDH2, ATP production was suppressed (Figures 3(e) and 3(f)), and glucose uptake and LA production were elevated (Figure 3(g)), which indicated that IDH2 promoted the Warburg effect in A549 and H460 cells as demonstrated in existing studies [26, 34]. Besides, PX-478 showed a distinct effect on ATP, LA and glucose concentrations (Figures 3(e)–3(g)).Reactive oxygen species (ROS) was the byproduct of the Warburg effect which is positively related to tumor metabolism. Cancer cells do not utilize their mitochondria to the same extent and in the same way as noncancerous cells. Mitochondrial respiration is associated with the production of ROS [38]. Previous researchers discovered that IDH2 can catalyze α-ketoglutarate (α-KG) into citrate from glutamine and accelerate 2-hydroxyglutarate productions [26]. The reductive carboxylation of glutaminolysis can generate NADPH, which affiliates cellular ROS elimination.Utilizing flow cytometry, we measured ROS production in A549 and H460 cells. MiR-101 and IDH2 along both attenuated ROS proportions which implied that miR-101 and IDH2 participated in ROS production (Figure3(h) and Supplementary Figure 7 and 8). HIF1α inhibition restrained ROS levels which was in line with other studies [27]. Taken together, the data above suggested that miR-101 regulated NSCLC through IDH2/HIF1α pathway.


## 3.4. MiR-101 Modulated HIF1α Degradation

Although studies have demonstrated that IDH2/HIF1α pathway was indispensable in tumor growth [39–41], the mechanism under IDH2-HIF1α regulation kept mysterious. References demonstrated that the blocked interactions between PHD2, an α-KG-dependent dioxygenase [31], and HIF1α could inhibit the hydroxylation and degradation of HIF1α [42].We evaluated the protein levels of HIF1α after CHX treatment. Compared with the miR-NC group, miR-101 remarkably suppressed HIF1α production and IDH2 along accelerated HIF1α expression. Besides, miR-101 facilitated the IDH2-dependent HIF1α degradation (Figures 4(a) and 4(b)), which further demonstrated that IDH2 inhibited HIF1α degradation and miR-101 downregulated IDH2 functions.Figure 4
miR-101 regulated HIF1α hydroxylation and degradation. (a) HIF1α concentrations of A549 (left) and H460 (right) cells were measured by western blot after CHX treatment. (b) Statistical analysis of HIF1α concentrations of A549 (left) and H460 (right) cells measured by western blot after CHX treatment. (c) HIF1α mRNA levels were measured by RT-qPCR of A549 (left) and H460 (right) cells pretreated with α-KG or control. (d) The expression levels of HIF1α and HIF1α hydroxylation were measured by western blot analysis of A549 (up) and H460 (down) pretreated with α-KG or control. (e) HIF1α concentrations of A549 (left) and H460 (right) cells pretreated with α-KG were measured by western blot after CHX treatment. (f) Statistical analysis of HIF1α concentrations of A549 (left) and H460 (right) cells pretreated with α-KG measured by western blot after CHX treatment. ∗p<0.05, ∗∗p<0.01, ∗∗∗p<0.001, ∗∗∗∗p<0.0001.
(a)(b)(c)(d)(e)(f)As we all know, IDH2 catalyzes isocitrate intoα-KG, which is a substrate of the α-KG-dependent dioxygenases, such as KDM, TET2, PHD2, and PLOD1-3, and controls histone demethylation and HIF1α-dependent cellular signaling and collagen formation [30]. IDH2 downregulated α-KG and promoted HIF1α-dependent signaling pathways. We appended α-KG to investigate deeply. We first measured HIF1α mRNA levels with extra α-KG. Results revealed no differences between the α-KG and control group (Figure 4(c)), which implied the HIF1α mRNA-independent mechanism. Subsequently, we analyzed the hydroxylation of HIF1α with or without α-KG by western blot assay. α-KG greatly inhibited HIF1α levels and promoted HIF1α hydroxylation (Figure 4(d) and Supplementary Figures 2(b) and (c)). After that, the changes of HIF1α protein were exhibited by CHX treatment. α-KG accelerated HIF1α degradation (Figures 4(e) and 4(f)). Taken together, the results above suggested that miR-101 inhibited NSCLC proliferation by accelerating HIF1α hydroxylation and degradation through IDH2/HIF1α axis.


## 4. Discussion

The Warburg effect is known to be part of metabolic reprogramming and has been discovered since the 1920s. Cancer cells utilize much more glucose than normal cells and transform glucose into lactate by aerobic glycolysis instead of metabolizing glucose by oxidative phosphorylation and shuttling the products of glycolysis into the TCA cycle [43]. IDH2/HIF1α axis plays a central role in the Warburg effect, which is taken advantage of by tumors for proliferation and growth [44–46].In this study, we describe a new discovery that miR-101 attenuated NSCLC proliferation by promoting IDH2-mediated HIF1α hydroxylation. Firstly, to screen the possible targets of miR-101 in human NSCLC samples, we examined the mRNA levels of miR-101 which were downregulated and IDH2 which was overexpressed (Figure 1(a)) and confirmed the correlations between the two (Figure 1(b)). Data implied that miR-101 reduced IDH2 expression levels (Figures 3(a)–3(c)), and the biological function of IDH2 was retarded by miR-101 overexpression (Figure 3(d)). In vivo, the tumor-bearing mouse model illustrated the antitumor ability of miR-101 overexpression and IDH2 deficiency (Figure 2).Further, we explored the underlying mechanisms. By inhibiting HIF1α, the downstream metabolisms, such as ATP (Figure 3(e)), LA (Figure 3(g)), and ROS levels (Figure 3(h)) changed as miR-101 overexpression. Besides, the hydroxylation and degradation of HIF1α were expedited by miR-101 overexpression in NSCLC cell lines (Figures 3(c), 4(a), and 4(b)). But the accelerations were intervened by exogenous α-KG (Figures 4(d)–4(f)). Together, these results indicated that miR-101 regulated NSCLC proliferation.In this study, IDH2 played a central role in NSCLC regulation. In 2018, IDH2 was reported as a diagnostic and prognostic serum biomarker for NSCLC and high serum IDH2 levels appear to correlate with poor survival in patients with NSCLC [26]. More researches focus on IDH2 mutant. IDH2 mutations have been observed in several cancer types, including sarcomas, hematologic malignancies, colon cancer, and brain cancer [47]. Mutations in the two isocitrate dehydrogenase enzymes involved in cytoplasmic (IDH1) and mitochondrial (IDH2) conversion of alpha-ketoglutarate to D-2-hydroxyglutarate have been described as mutually exclusive in many of these cancer types. The most frequent mutations involve R132 (IDH1) and R172 (IDH2) and result in neomorphic enzyme activity. Although IDH2 (R172) mutations are associated with poorer overall prognosis in AML patients, their utility as a prognostic marker in MDS is still under debate. Additionally, IDH2 (R140) has been associated with improved overall survival in AML. IDH2 mutations have been associated with improved prognosis in gliomas. It is gratifying that an anti-IDH2 drug, enasidenib, was approved by FDA in 2017 [48, 49]. But the application was limited. The studies on wild-type of IDH2, such as this study, may provide new insights for IDH2 targeted clinical therapies.


## 5. Conclusion

The present study showed that miR-101 suppressed IDH2 expression levels, further increasedα-KG concentration, and finally inhibited the Warburg effect by promoting HIF1α hydroxylation and degradation. Although we provided a valuable comprehensive landscape of miR-101 in NSCLC proliferation from many aspects, there still are some limitations in the context. The extent of miR-101 on IDH2 and whether miR-101 impacts mutated IDH2 required further studies. Next, we would dig deep and describe a more comprehensive landscape of miR-101 in the Warburg effect in NSCLC proliferation.



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*Source: 4938811-2022-10-18.xml*