# Antimicrobial Resistance of EntericSalmonella in Bangui, Central African Republic

Authors: Christian Diamant Mossoro-Kpinde; Alexandre Manirakiza; Jean-Robert Mbecko; Pembé Misatou; Alain Le Faou; Thierry Frank
Journal: Journal of Tropical Medicine
 (2015)

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## Abstract

Introduction. The number ofSalmonella isolated from clinical samples that are resistant to multiple antibiotics has increased worldwide. The aim of this study was to determine the prevalence of resistantSalmonella entericaisolated in Bangui.Methods. All entericSalmonellastrains isolated from patients in 2008 were identified and serotyped, and the phenotypes of resistance were determined by using the disk diffusion method. Nine resistance-associated genes,bla
TEM,bla
OXA,bla
SHV,tetA,aadA1,catA1,dhfrA1,sul I, andsul II, were sought by genic amplification in sevenS.e. Typhimurium strains.Results. The 94 strains isolated consisted of 47S.e. Typhimurium (50%), 21S.e. Stanleyville (22%), 18S.e. Enteritidis (19%), 4S.e. Dublin (4%), 4S.e. Hadar (4%), and 1S.e. Papuana (1%). Twenty-five (28%) were multiresistant, including 20 of the Typhimurium serovar (80%). Two main phenotypes of resistance were found: four antibiotics (56%) and to five antibiotics (40%). OneS.e. Typhimurium isolate produced an extended-spectrum β-lactamase (ESBL). Only seven strains ofS.e. Typhimurium could be amplified genically. Only phenotypic resistance to tetracycline and aminosides was found.Conclusion.S. Typhimurium is the predominant serovar of entericS. entericaand is the most widely resistant. The search for resistance genes showed heterogeneity of the circulating strains.


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## Body

## 1. Introduction

Salmonellosis is a common disease. The strains ofSalmonella enterica are not responsible for typhoid fever but mainly for enteric infections; however, the commonest serovar, Typhimurium, may cause systemic infections, especially in immunocompromised patients and children with malnutrition, severe anemia, and malaria [1, 2]. Strains ofSalmonella resistant to multiple antibiotics are being isolated more and more frequently. Thus, the commonly used antibiotics have become inefficient [3] and have had to be replaced by more expensive drugs [4]. The latest surveys conducted in the Central African Republic (CAR) showed a high prevalence of resistance to ampicillin and cotrimoxazole [5], which is increasing with time. To confirm this evolution, we determined the antibiotic resistance of strains ofS. enterica isolated in 2008. Furthermore, we examined multiresistant strains ofS. Typhimurium by genic amplification for the presence of nine of the commonest genes associated with antibiotic resistance.


## 2. Methods

The study was performed in the unit of Clinical Bacteriology and Antibioresistance of the Institut Pasteur de Bangui between July and December 2008. Ninety-four strains ofSalmonella were isolated, mainly from stools (56%) and blood (36%); two strains were from urine and one was from cerebrospinal fluid.Salmonella were identified on the basis of biochemical characteristics (API 20E strips, bioMérieux, Craponne, France), and the serovar was determined according to the Kauffmann-White scheme. The Antimicrobial drug susceptibility was determined by using the disk diffusion method (Bio-Rad, Marnes-la-Coquette, France) on Mueller-Hinton Agar (MHA) and interpreted according to the recommendations of the Comité de l’Antibiogramme de la Société Française de Microbiologie (CA-SFM) (http://www.sfm-microbiologie.org/). All isolates were tested for their susceptibility to antimicrobial agents routinely used in clinical practice forSalmonella infections in CAR. The antibiotics included ampicillin (25 μg), amoxicillin (20 μg), clavulanic acid (10 μg), ticarcillin (75 μg), cefalotin (30 μg), cefotaxime (30 μg), streptomycin (10 UI), gentamicin (15 μg), nalidixic acid (30 μg), ciprofloxacin (5 μg), chloramphenicol (30 μg), sulfonamides (200 μg), and tetracycline (30 UI). If expanded-spectrum β-lactamase (ESBL) was found, additional antibiotics were tested (β-lactams and aminoglycosides). Strains were stored at −80°C in brain heart broth (Bio-Rad) with 20% glycerol.Nine resistance-associated genes were sought by PCR with published techniques (Table1) on six randomly selected strains and the ESBL-producing strain. After subculture on Mueller-Hinton Agar (Bio-Rad), DNA was extracted from the bacterial suspensions by thermolysis at 100°C in a water bath for 5 min, followed by rapid cooling at 20°C. After centrifugation (8855 ×g, 10 min), the supernatant was used for DNA amplification. PCR were run on a Gene Amp PCR System 9700 Thermocycler (Applied Biosystems, Saint-Aubin, France) as described previously [6, 7, 16]. Amplicon sizes were determined, from a molecular mass ladder (SmartLadder SF, EuroGentec, Angers, France) by gel electrophoresis in 2% ethidium bromide (Eurobio, Les Ulis, France) containing agarose (Invitrogen, Cergy-Pontoise, France) in Tris-acetate buffer at pH 8 and run at 100 V, 200 mA for 1 h. Results were read under UV. One negative (sterile distilled water) and three positive (S. Concord07-670,S. Typhimurium02-8213, andShigella dysenteriae 1 CAR 10) controls were included.Table 1
Primers used for detecting resistance-associated genes by PCR.
Gene
Enzymatic activity
Antibiotic targeted
Primers
References
bla
TEM
Penicillinase TEM
Aminopenicillins, carboxypenicillins, and ureidopenicillins
OT3: 5′ ATGAGTATTCAACATTTCCG 3′OT4: 5′ CCAATGCTTATTCAGTGAGG 3′
[6, 7]
bla
OXA
Oxacillinase
Aminopenicillins, carboxypenicillins, ureidopenicillins, and Penicillin M
OXA F: 5′ ATGAAAACACAATACATATC 3′OXA R: 5′ AATTTAGTGTGTTTAGAATG 3′
[8]
bla
SHV
Beta-lactamase Sulfhydryl Variable (SHV)
All beta-lactams except carbapenems and cephamycins
OS5: 5′ TTATCTCCCTGTTAGCCACC 3′OS6: 5′ GATTTGCTGATTTCGCTCGG 3′
[9]
tetA
Active efflux pump
Cyclines
TetA Lower: 5′ GCAGGCAGAGCAAGTAGAGG 3′TetA Upper: 5′ GTTTCGGGTTCGGGATGGTC 3′
[6, 10, 11]
catA1
Chloramphenicol acetyl transferase
Chloramphenicol
CatA1-F: 5′ CGCCTGATGAATGCTCATCCG.3′CatA1-R: 5′ CCTGCCACTCATCGCAGTAC 3′
[6, 12]
aadA1
Aminoglycoside adenyltransferase
Streptomycin
Aad-F: 5′ TATCAGAGGTAGTTGGCGTCAT 3′Aad-R: 5′ GTTCCATAGCGTTAAGGTTTCATT 3′
[6, 13, 14]
dhfrA1
Dihydrofolate reductase (DHFR)
Trimethoprim
dhfrla-F: 5′ TGAAACTATCACTAATGGTA 3′dhfrla-R: 5′ TTAACCCTTTTGCCAGTATTG 3′
[4, 15]
sul I
Dihydropteroate synthetase (DHPS)
Sulfonamides
Sul I-F: 5′ CGGCGTGGGCTACCTGAACC 3′Sul I-B: 5′ GCCGATCGCGTGAAGTTCCG 3′
[6, 15]
sul II
Dihydropteroate synthetase (DHPS)
Sulfonamides
Sul II-F: 5′ GCGCTCAAGGCAGATGGCATT 3′Sul II-B: 5′ GCGTTTGATACCGGCACCCGT 3′
[6, 15]


## 3. Results

The 94 strains ofSalmonella consisted of 47S.e. Typhimurium (50%), 21S.e. Stanleyville (22%), 18S.e. Enteritidis (19%), 4S.e. Dublin (4%), 3S.e. Hadar (4%), and 1S.e. Papuana (1%). Twenty-five strains (28%) were multiresistant: 20S.e. Typhimurium (80%), 3S.e. Enteritidis, 1S.e. Papuana, and 1S.e. Stanleyville. Among them, twenty-five isolates (28%) includingS.e. Typhimurium (n
=
20),S.e. Enteritidis (n
=
3),S.e. Papuana (n
=
1), andS.e. Stanleyville (n
=
1) were multiresistant to antibiotics. The studied patients were constituted by 14 women and 11 men. They were between 1 month and 40 years of age and presented an average age of 11 years. The isolates were isolated from stool (n
=
11), blood (n
=
9), cerebrospinal fluid (n
=
1), and urine (n
=
1). All strains isolated from blood were represented byS.e. Typhimurium. Most of the strains were resistant to amoxicillin, ticarcillin, streptomycin, sulfonamides, and cotrimoxazole and less frequently to cefalotin (4%), ciprofloxacin (2%), gentamycin (3%), and nalidixic acid (4%). All the strains except one ESBL-producingS. Typhimurium strain (S1027072) were susceptible to cefoxitin. The ESBL-producing strain was resistant to amikacin, tobramycin, netilmicin, kanamycin, fosfomycin, ceftazidime, cefepime, aztreonam, and nitroxoline; it remained susceptible only to imipenem. Otherwise, two common resistance profiles were observed: 14 (34%) (12S. Typhimurium and 2S. Enteritidis) were resistant to four drugs (ampicillin, chloramphenicol, streptomycin, and sulfonamides) and 10 (24%) (7S. Typhimurium, 1S. Enteritidis, oneS. Hadar, and oneS. Papuana) were resistant to five drugs (ampicillin, chloramphenicol, streptomycin, sulfonamides, and tetracycline) (Table 2).Table 2
Antibiotic resistance ofS. enterica strains isolated in Bangui.
Antibiotic
Resistant strain
S. Typhimurium∗
S.Stanleyville
S.Enteritidis
S.Dublin
S.Hadar
S.Papuana
Total
Number
%
Number
%
Number
%
Number
%
Number
%
Number
%
Number
%
Ampicillin
20
43
1
5
3
17
1
25
2
67
1
100
29
31
Amoxicillin and clavulanic acid
8
17
0
0
1
6
0
0
1
33
0
0
11
12
Ticarcillin
20
43
1
5
3
17
1
25
1
33
1
100
28
30
Cefalotin
3
6
1
5
0
0
0
0
0
0
0
0
4
4
Cefoxitin
1
1
0
0
0
0
0
0
0
0
0
0
1
1
Cefotaxime
1
2
0
0
0
0
0
0
0
0
0
0
1
1
Streptomycin
20
43
1
5
3
17
0
0
0
0
1
100
25
27
Gentamicin
2
4
0
0
1
6
0
0
0
0
0
0
3
3
Nalidixic acid
3
6
0
0
1
6
0
0
0
0
0
0
4
4
Ciprofloxacin
2
4
0
0
0
0
0
0
0
0
0
0
2
2
Chloramphenicol
20
43
1
5
3
17
2
50
1
33
1
100
28
30
Cotrimoxazole
18
38
1
5
3
17
2
50
1
33
1
100
26
8
Sulfonamides
20
43
1
5
3
17
1
25
1
33
1
100
27
29
Tetracycline
7
15
1
5
2
11
0
0
0
0
1
100
11
12
Total
47
21
18
4
3
1
94
∗Including one expanded-spectrum β-lactamase- (ESBL-) producing S. Typhimurium strain.All strains carried the catA1 resistance gene, six containedbla
TEM,dhfrA1, and Sul II, and five containedsul I. The genesbla
OXA,tetA, andaadA1 were found only once. The genebla
SHV was not found, even in the ESBL-producing strain (Table 3).Table 3
Antibiotic resistance-associated genes in sevenS.e. Typhimurium strains.
Gene
TEM
bla
SHV
tetA
bla
OXA
aadA1
dhfrA1
catA1
sul I
sul II
Control (+)
S. Concord
S. dysenteriae 1
S.e.Typhimurium
S. Concord
S.dysenteriae1
07-670
CAR 10
02-8213
07-670
CAR 10
Strains resistant to ampicillin, chloramphenicol, streptomycin, and sulfonamides
S0625010
+
−
−
−
−
+
+
+
+
S1107023
−
−
−
−
−
−
+
−
−
S0621014
+
−
−
−
−
+
+
+
+
S1028034
+
−
−
−
+
+
+
+
+
Strains resistant to ampicillin, chloramphenicol, streptomycin, sulfonamides, and tetracycline
S0626101
+
−
−
−
−
+
+
−
+
S1003035
+
−
−
−
−
+
+
+
+
ESBL-producingS. Typhimurium strain
S1027072
+
−
+
+
−
+
+
+
+
+Gene present; −gene absent.


## 4. Discussion

Three serovars ofS.e. Typhimurium (n
=
47),S.e. Stanleyville (21), andS.e Enteritidis (n
=
18) constituted 96% of the isolated strains.S.e. Typhimurium andS.e. Enteritidis were the entericSalmonella isolated most frequently [8, 9]. The surprisingly high prevalence ofS. Stanleyville in Bangui may represent a locally circulating strain. The blood isolates were obtained mainly from AIDS patients [10–13].S.e. Typhimurium was theSalmonella serovar that was most resistant to antibiotics. It is confirmed today that its multidrug-resistant strains have emerged in sub-Saharan Africa [17]. In Malawi, epidemics of multidrug-resistant invasive nontyphoidalSalmonella (defined as resistant to ampicillin, chloramphenicol, and cotrimoxazole) have been recorded [17]. The continuous increase in its resistance [14] will limit the therapeutic possibilities more and more, as exemplified by the emergence of an ESBL-producing strain (S1027072).Salmonella resistant to four and five drugs are found widely in Africa. Although the prevalence in Bangui is high (58%), up to 82% ofSalmonella isolates have been reported to be resistant [14, 15, 18]. Additionally, the prevalence of resistance to chloramphenicol, amoxicillin, and cotrimoxazole was high (72%), as reported in Lomé (Togo) [15], but is even higher in Taiwan (95%) [19]. These three cheap antibiotics used to be the first-line treatment for salmonellosis but can no longer be used. Third-generation cephalosporins and fluoroquinolones remain active against most strains ofSalmonella in Bangui; in Asia, however, up to 54% of strains are resistant to these two antibiotics [20, 21]. Ciprofloxacin (or norfloxacin) is used as first-line treatment, except in children, for whom ceftriaxone is preferred [22]. Systematic use and self-medication with these antibiotics, which can be bought freely, raise concern that there might be a rapid increase in resistance [14, 21].The use of tetracyclines and penicillin as growth promoters in animal husbandry is a factor in the increasing prevalence of resistance [23–25], but no information on this aspect is available in CAR.The genes for which we searched only partly explain phenotypic resistance. There are many resistance genes, and one type of in vitro resistance may have several mechanisms. For example, aminoside resistance may be associated with three genes:aphA (aminoglycoside phosphotransferase),aacC (aminoglycoside acetyltransferases), andaadA andaadB (two variants of aminoglycoside adenyltransferases) [24], all of which are plasmid-encoded [25]. Antibiotic resistance may also be linked to other mechanisms, such as chromosomal mutations (modification of the ribosome structure, modification of the permeability of the cell wall, and presence of an efflux pump), which cannot be identified by genic amplification. Nevertheless, the presence of five genotypes among the six circulatingS.e. Typhimurium strains resistant to four and five drugs indicates wide heterogeneity.The ESBL strain with its seven resistance-associated genes differs from the other six; it is either imported or acquired a plasmid locally. The geneCTX-M-15 has been described as the commonest in CAR and has been found inE. coli andKlebsiella pneumoniae strains [6]. As it was not present in the multiresistantS.e. Typhimurium strain, its origin remains unknown. It would be difficult to determine which EBSL is present, as no other isolate harboured this enzyme, and 230 ESBLs have been described so far [26]. The isolation of a multiresistant ESBL-producing strain in Bangui is worrying, as its spread would complicate patient care in view of the limited access in the country to the antibiotics to which such strains are susceptible [4, 20, 26]. A systematic study of isolatedS.e. Typhimurium strains will be required to determine whether this strain is present in the country. For the moment, this appears unlikely, as no other isolate has been obtained.The main limitation of our study is that data of the patient characteristics (age, sex, HIV status, malaria status, and malnutrition status) were not collected. Indeed, it would be essential to assess the impact of these characteristics with outcomes.


## 5. Conclusion

This preliminary study demonstrates a high prevalence of antibiotic-resistantS. Typhimurium and diverse associated genes in Bangui. Further studies will elucidate the epidemiology of the antibiotic resistance and make it possible to characterize the genes involved and the plasmids that carry them. In the absence of rational use of antibiotics in the country, continuous dissemination of resistant strains is likely. Systematic antibiograms should be performed for all isolated strains to follow the evolution of resistance and thus ensure effective treatment of infections, which are of particular concern for immunocompromised patients.



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