# Synthesis, Structure, and Hydrolytic Activation of Ruthenium (III)-Pyrazole Complex

Authors: Mylene Planques; Arushi Shyam; Richard S. Perkins; Frank R. Fronczek; Radhey S. Srivastava
Journal: Journal of Chemistry
 (2022)

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## Abstract

We report here the synthesis of water-solublemer-[RuCl3(DMSO-S) (pyz)2] 2 prepared by the reaction of mer-RuCl3(DMSO-S)31 with pyrazole in anhydrous CH2Cl2. Compound 2 was characterized by IR and UV-visible spectroscopy, X-ray diffraction, cyclic voltammetry, and DFT calculations. The X-ray diffraction analysis disclosed that compound 2 has two independent molecules present in the asymmetric unit with different conformations for one of the pyrazoles and different hydrogen bonding. The DFT calculations suggest the structure-activity relationship and hydrolytic activity of these complexes.


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## Body

## 1. Introduction

The platinum-derived drugs are used in over half of all chemotherapy treatments [1–3] with severe side effects (intrinsic and acquired) [4–6]. This stimulated us to search for a new generation of cytotoxic drugs with other metals that may surpass cellular selectivity and maintain their usage against a broad range of malignancies [7–11]. The interest in Ru(III) complexes has increased considerably after the success of several platinum drugs [12]. Among all ruthenium anticancer compounds, ruthenium-DMSO complexes assumed a great potential for their selectivity and low host toxicity [13]. Accordingly, various ruthenium complexes have been found to exhibit a substantially higher extent of selectivity towards malignant cells compared to the prominent commercially available platinum drugs while resulting in reduced damage to healthy tissues [14].A broadly believed mechanistic hypothesis of the selective delivery of Ru(III) complexes to cancer is the ability of ruthenium (III) complexes to mimic iron in reversible binding to plasma proteins such as transferrin. This hypothesis offers an efficient channel for ruthenium complexes to accumulate in cancer cells [15, 16]. Despite extensive efforts, only three ruthenium complexes, two structurally related Ru(III) compounds, NAMI-A ((ImH)[trans-RuCl4(DMSO-S) (Im)], Im = imidazole) [17, 18], KP1019/KP1339 (KP1019 = (IndH)[trans-RuCl4(Ind)2], Ind = indazole; KP1339 = Na[trans-RuCl4(Ind)2]) have reached to the clinical evaluation stage in humans, opening the way to large expectations for a new class of metal-based anticancer drugs.Ruthenium complexes, NAMI-A and KP1019/1339, are derivatives of imidazole/indazole (heterocyclic amines). Pyrazoles have electron-rich properties that can be altered by proper selection of substituents in various places in the pyrazole ring (e.g., 2N, 3C, 4C, and 5C), allowing electronic property optimization on the metal. Despite this, Ru-pyrazole complexes are poorly developed. Moreover, the complex2 reported herein is water-soluble, which makes it attractive for being developed as a drug. Thus, we report herein the synthesis, structure, hydrolytic activity, and theoretical studies of the complex 2.


## 2. Experimental

### 2.1. General Information

Analytical grade reagents were used. The solvents were dried over 4 Å molecular sieves. The IR and UV-vis spectra were measured on a JASCO 480 spectrophotometer. Elemental analysis was performed by Atlantic Microlab in Norcross, Georgia, and [H(DMSO)2][trans-RuCl4(DMSO)2] and mer-[RuCl3(DMSO-S)2(DMSO-O)] complexes were prepared according to the literature procedures [19].X-ray diffraction data were collected at low temperature on a Nonius Kappa CCD diffractometer equipped with Mo Kα radiation source (λ = 0.71073 Å), a graphite monochromator, and an Oxford cryostream low-temperature device. Absorption collections were made by the multiscan method. Data collection parameters and selected bond angles and lengths are listed in Tables 1 and 2.Table 1
Crystal data and structure refinement for mer-[RuCl3(DMSO) (pyrazole)2] 2.
FormulaC8H14Cl3N4ORuSMolar Mass421.71Crystal systemMonoclinicT (K)90a (Ǻ)8.0596b (Ǻ)12.6816c (Ǻ)29.278β (°)90.617h, k, l limits−11 ⟶ 11; −18 ⟶ 17; −42 ⟶ 42Z8Θ range (°)2.5–31.0µ (mm−1)1.72R [F2 > 2σ(F2)]0.034R0.038wR(F2)0.074Table 2
Bond length and bond angle of compounds 2.
Bond length (Ǻ)Ru1-N32.062Ru2-N72.067Ru1-N12.092Ru2-N52.091Ru1-S12.2940Ru2-S22.2745Ru1-Cl12.3517Ru2-Cl42.3290Ru1-Cl22.3635Ru2-Cl52.3477Ru1-Cl32.3464Ru2-Cl72.3622Bond angle (°)N3-Ru1-N188.05N7-Ru2-N587.82N3-Ru1-S195.21N7-Ru2-S297.12N1-Ru1-S1174.85N5-Ru2-S2174.48N3-Ru1-Cl388.62N7-Ru2-Cl5174.32N1-Ru1-Cl388.14N5-Ru2-Cl586.80S1-Ru1-Cl387.96S2-Ru2-Cl588.34N3-Ru1-Cl188.88N7-Ru2-Cl484.67N1-Ru1-Cl189.91N5-Ru2-Cl490.93S1-Ru1-Cl194.12S2-Ru2-Cl491.98Cl3-Ru1-Cl1176.88Cl5-Ru2-Cl493.58N3-Ru1-Cl2176.24N7-Ru2-Cl685.52N1-Ru1-Cl288.85N5-Ru2-Cl690.57S1-Ru1-Cl288.03S2-Ru2-Cl687.37Cl3-Ru1-Cl293.40Cl5-Ru2-Cl696.36Cl1-Ru1-Cl288.99Cl4-Ru2-Cl6170.01


### 2.2. Synthesis of mer-[RuCl3(DMSO) (pyrazole)2] 2

A solution ofmer-RuCl3(DMSO)3 (0.27 g, 0.61 mmol) 1 and pyrazole (0.048 g, 0.63 mmol) in anhydrous CH2Cl2 were mixed and stirred at room temperature for about 20 h to get an orange solution. The orange solution, which was evaporated to 3 mL. A few drops of hexane were added, and the solution was kept in the refrigerator at −20°C. After a few hours, red crystals were formed, filtered off, washed with diethyl ether, and vacuum dried. Yield 0.248 g (0.49 mmol, 80%); Anal. Calcd. for C8H14Cl3N4ORuS (Mr = 424.71, %): C, 22.78; H, 3.35, N, 13.29; Found: C, 22.93; H, 3.24; N, 13.25; Selected IR absorption bands in KBr (cm-1): νSO1054 and 1013 (S-DMSO), νC = C (pyz) 1629, νC = N (pyz) 1400; UV-vis (H2O): 386 nm (ε = 1393 L·mol−1·m−1); 386 nm (ε = 13495 L·mol−1·m−1).


## 2.1. General Information

Analytical grade reagents were used. The solvents were dried over 4 Å molecular sieves. The IR and UV-vis spectra were measured on a JASCO 480 spectrophotometer. Elemental analysis was performed by Atlantic Microlab in Norcross, Georgia, and [H(DMSO)2][trans-RuCl4(DMSO)2] and mer-[RuCl3(DMSO-S)2(DMSO-O)] complexes were prepared according to the literature procedures [19].X-ray diffraction data were collected at low temperature on a Nonius Kappa CCD diffractometer equipped with Mo Kα radiation source (λ = 0.71073 Å), a graphite monochromator, and an Oxford cryostream low-temperature device. Absorption collections were made by the multiscan method. Data collection parameters and selected bond angles and lengths are listed in Tables 1 and 2.Table 1
Crystal data and structure refinement for mer-[RuCl3(DMSO) (pyrazole)2] 2.
FormulaC8H14Cl3N4ORuSMolar Mass421.71Crystal systemMonoclinicT (K)90a (Ǻ)8.0596b (Ǻ)12.6816c (Ǻ)29.278β (°)90.617h, k, l limits−11 ⟶ 11; −18 ⟶ 17; −42 ⟶ 42Z8Θ range (°)2.5–31.0µ (mm−1)1.72R [F2 > 2σ(F2)]0.034R0.038wR(F2)0.074Table 2
Bond length and bond angle of compounds 2.
Bond length (Ǻ)Ru1-N32.062Ru2-N72.067Ru1-N12.092Ru2-N52.091Ru1-S12.2940Ru2-S22.2745Ru1-Cl12.3517Ru2-Cl42.3290Ru1-Cl22.3635Ru2-Cl52.3477Ru1-Cl32.3464Ru2-Cl72.3622Bond angle (°)N3-Ru1-N188.05N7-Ru2-N587.82N3-Ru1-S195.21N7-Ru2-S297.12N1-Ru1-S1174.85N5-Ru2-S2174.48N3-Ru1-Cl388.62N7-Ru2-Cl5174.32N1-Ru1-Cl388.14N5-Ru2-Cl586.80S1-Ru1-Cl387.96S2-Ru2-Cl588.34N3-Ru1-Cl188.88N7-Ru2-Cl484.67N1-Ru1-Cl189.91N5-Ru2-Cl490.93S1-Ru1-Cl194.12S2-Ru2-Cl491.98Cl3-Ru1-Cl1176.88Cl5-Ru2-Cl493.58N3-Ru1-Cl2176.24N7-Ru2-Cl685.52N1-Ru1-Cl288.85N5-Ru2-Cl690.57S1-Ru1-Cl288.03S2-Ru2-Cl687.37Cl3-Ru1-Cl293.40Cl5-Ru2-Cl696.36Cl1-Ru1-Cl288.99Cl4-Ru2-Cl6170.01


## 2.2. Synthesis of mer-[RuCl3(DMSO) (pyrazole)2] 2

A solution ofmer-RuCl3(DMSO)3 (0.27 g, 0.61 mmol) 1 and pyrazole (0.048 g, 0.63 mmol) in anhydrous CH2Cl2 were mixed and stirred at room temperature for about 20 h to get an orange solution. The orange solution, which was evaporated to 3 mL. A few drops of hexane were added, and the solution was kept in the refrigerator at −20°C. After a few hours, red crystals were formed, filtered off, washed with diethyl ether, and vacuum dried. Yield 0.248 g (0.49 mmol, 80%); Anal. Calcd. for C8H14Cl3N4ORuS (Mr = 424.71, %): C, 22.78; H, 3.35, N, 13.29; Found: C, 22.93; H, 3.24; N, 13.25; Selected IR absorption bands in KBr (cm-1): νSO1054 and 1013 (S-DMSO), νC = C (pyz) 1629, νC = N (pyz) 1400; UV-vis (H2O): 386 nm (ε = 1393 L·mol−1·m−1); 386 nm (ε = 13495 L·mol−1·m−1).


## 3. Result and Discussion

The IR spectra of2 shows the disappearance of N–H vibrations, suggesting coordination of pyrazole. The uncoordinated pyrazole C=C and C=N stretching modes observed at 1640 and 1558 cm−1 are altered significantly at lower frequencies. This is consistent with longer C=C and C=N bonds in these complexes compared with the same distances in the uncoordinated ligand [20]. The stretching band of mer-RuCl3(DMSO)3 is shifted to a lower frequency compared to 2. The stretching bands found at 1062 cm−1 are assigned to the coordinated S-DMSO.The formulation of compound2 (Figure 1), mer-[RuCl3(DMSO) (pyrazole)2], was further established by X-ray analysis, indicating that it crystallizes in the monoclinic space group P21/n with distorted octahedral geometry (Figure 1). The cell parameters and crystal data for compound mer-[RuCl3(DMSO) (pyrazole)2] are listed in Tables 1 and 3. The Ru3+ is coordinated by six donors: S of one DMSO, two pyrazole nitrogens, and three meridional chloro ligands. One pyrazole is trans to the S-DMSO ligands and the other is trans to one of the chloro ligands, and the both pyrazole ligands are cis to each other.Figure 1
Asymmetric unit of compound 2, with 50% ellipsoids.The X-ray analysis revealed two independent molecules in the asymmetric unit cell (Figure1). The two independent molecules differ in the relative conformations of the two pyrazole ligands. In one molecule, the N3-Ru1-N1-N2 torsion angle -122.2(2)°, while in the other, the corresponding torsion angle N7-Ru2-N5-N6 is +88.3(2)°. Thus, this pyrazole differs in conformation by about 146° between the two independent molecules, likely because of the difference in hydrogen bonding between the two molecules, vide infra. The average Ru-S bond length of 2, 2.2845 Å, is markedly shorter than the average value of 2.34(1) Å found, for the Ru(III)-S compounds trans to DMSO-S in the precursor [21, 22]. The average Ru-Cl bond length of 2, 2.3500 Å, is equivalent to the mean value of 2.350(7) Å witnessed in related Ru(III) complexes [23–25]. The N1-Ru1-S1, 178.57(11)°, and Cl2-Ru1-Cl3, 176.78(9)° bond angles are slightly smaller than the known values of octahedral Ru(III) complexes [23–25].In both independent molecules, one pyrazole forms an intramolecular hydrogen bond to DMSO oxygen, while the other pyrazole forms a bifurcated intramolecular/intermolecular hydrogen bond, where the intramolecular component is to Cl. For one of the independent molecules, the intermolecular component is to DMSO oxygen, while for the other, it is to Cl. Thus, one independent molecule (containing Ru2) forms hydrogen bonded chains, while the other (containing Ru1) forms centrosymmetric hydrogen bonded dimers (Figures2(a), 2(b), and Table 3).Table 3
Hydrogen-bond geometry (Å) for (Compound 2).
D—H—AD—HH—AD—AD—H—AN2—H2N—Cl10.96 (3)2.68 (3)3.252 (3)119 (2)N2—H2N—Cl2i0.96 (3)2.63 (3)3.350 (2)132 (2)N4—H4N—O10.77 (3)1.97 (3)2.691 (3)155 (3)N6—H6N—Cl60.93 (3)2.46 (3)3.098 (2)126 (2)N6—H6N—O2ii0.93 (3)2.12 (3)2.887 (3)139 (2)N8—H8N—O20.92 (3)1.91 (3)2.754 (3)152 (3)Symmetry codes: (i) −x + 1, −y, −z + 1; (ii) −x + 3/2, y − 1/2, −z + 1/2.


## 4. Chemical Behavior in Aqueous Solution

The electronic spectra of compound2 (aqueous solution) show an intense absorption between 300 and 400 nm, accompanying with a less intense transition around 450 nm. This spectral pattern is allocated to a charge transfer transition from the Cl− to Ru3+ [26, 27]. This is distinctive for a RuCl4− unit. We followed the time-course profile of electronic spectral behavior in an aqueous solution of compound 2. A solution of complex (0.0005 M) in deionized water was prepared and analyzed in UV-visible for 8 hours at 37°C and 50°C (Figures 3(a) and 3(b)). The changes observed in the UV/vis-spectra suggest the formation of a hydrolysis product of 2 in a water solution (Scheme 1). The original spectrum of compound 2 with a maximum at 361 nm changes to give a spectrum with a maximum at 330 nm after 6 hours as can be seen in Figures 2 and 3. The isosbestic point at 330 nm indicates a transformation into a hydrolysis product (Scheme 1). Qualitatively a similar behavior is also observed for NAMI-A under similar conditions [28]. This behavior could be explained by stepwise chloride hydrolysis. The activation mechanism of Ru complexes has been described recently [29].Figure 2
(a) Hydrogen bonded dimer formed by the Ru1 molecule. (b) Hydrogen bonded chain formed by the Ru2 molecule.
(a)(b)Figure 3
(a) UV-Vis spectra recorded at 37°C. (b) UV-vis spectra recorded at 50°C.
(a)(b)Scheme 1
DFT calculated stepwise hydrolysis of compound 2.


## 5. DFT Calculation

Ru(III) Hydrolysis. It is generally accepted that the hydrolysis or water exchange of the metal complex is the key step attributed to the cytotoxicity of the drug. Therefore, we have considered several hydrolysis pathways for both 2 and 1 [29]. Our focus in the current study is to compare the hydrolysis pathways for both 2 and 1(III) (Figure 4(a)).Figure 4
(a) Optimized structures of1(III) and 3(III) and the structures of transition states along with selected bond lengths (Å). Model of optimized structures. (b) Hydrolysis free energy profiles of (a) 1(III), RuCl3(pyz)2(DMSO) with water. Black lines indicate the hydrolysis of DMSO followed Cl−, and red lines indicate the hydrolysis of Cl− and Cl−, respectively (B)
(a)(b)In line with experimental studies on NAMI and NAMI-A, hydrolysis of a nitrogen-based ligand requires large activation energies, and the reaction is hugely endothermic. Therefore, it is very unlikely that the Pyz-water exchange will take place under neutral conditions. Thus, we have focused on DMSO and Cl− hydrolysis. We have found two pathways for the first hydrolysis of 1(III) (Figure 4(a)). In path 1 (Scheme 1), the incoming water displaces the DMSO ligand with an activation energy of 31.6 kcal/mol, which is larger than the DMSO dissociation in NAMI (23.7 kcal/mol). This may be partly caused by the weakening of the O–HN hydrogen bond in the transition state as the hydrogen bond length increases from 1.728 Å in 1(III) to 2.359 Å in 1(III)a. The water exchange reaction is slightly exothermic (−4.0 kcal/mol). On the other hand, in the second pathway, a Cl− ligand is replaced by water. The activation energy (35.5 kcal/mol) is comparable to that of DMSO dissociation and to NAMI; however, the reaction is endothermic (6.7 kcal/mol) and therefore less favorable. Thus, both kinetic and thermodynamic parameters suggest that the first hydrolysis step involves DMSO-water exchange. The second hydrolysis step proceeds faster as the activation free energy of a Cl− exchange with water decreases by ∼5 kcal/mol (1c, Figure 4(b)). The lowering of activation energy is mainly due to the strong hydrogen bonding between the leaving Cl− ligand and the two water molecules, one of which is incoming and the other is already present (1(III)c). Again, the reaction is slightly exothermic (−2.36 kcal/mol). Thus, the overall reaction, the exchange of DMSO and Cl− ligand with two water molecules, is exothermic (−6.34 kcal/mol).Ru(II) Hydrolysis. The biological diversity of 1(III) may also be due to its contrasting redox properties. The reduction potentials for 1(III) is 0.04 V. Since the Em for 1(III) is positive, it might be easily reduced under biological conditions. In case of NAMI-A, there is some evidence that the reduced form plays an important role in its cytotoxicity. Therefore, it is important to consider the hydrolysis behavior of the reduced species as well. We have calculated the reaction pathways of the reduced forms of 1 (Figures 4(a) and 4b).Once again, we have considered two reaction pathways (DMSO and Cl−) for 1(II). The first hydrolysis step, the activation free energy of Cl− and DMSO is very similar (27.40 and 28.2 kcal/mol, respectively), which are smaller (by ∼8.0 kcal/mol) than the corresponding numbers for Ru(III) and comparable to the NAMI-A activation energies (28.8 kcal/mol). These numbers are in line with the experimental observations that Ru(II) is kinetically more labile than Ru(III). The reaction-free energies for Cl− and DMSO are −3.00 and 0.66 kcal/mol, respectively. It is likely that the first dissociation might be Cl− because Cl− hydrolysis is more exothermic. The second hydrolysis pathway involves Cl− hydrolysis with the activation-free energy of (21.1 kcal/mol).Over all, the thermodynamic and kinetic analysis of the hydrolysis reactions for Ru(III) and Ru(II) complex of1 show an interesting pattern. In both Ru(III) and the reduced form Ru(II), compound 1 undergoes hydrolysis under physiological conditions. This study demonstrates that redox properties play a significant role in the hydrolysis mechanism and consequently in their biological activity.


## 6. Electrochemical Study

Cyclic voltammetry was carried out with a three-electrode system comprised of a Pt counter electrode, a Pt disk working electrode, and a saturated calomel electrode (SCE) connected to the main cell compartment by a KCl salt bridge. Potential control was done with a BAS CV-50 W voltammetric analyzer used in the cyclic voltammetry mode. The supporting electrolyte was 0.100 M tetrabutylammonium hexafluorophosphate in DMSO solutions and KCl in aqueous solutions. Argon was bubbled through the solution for at least 30 min prior to the final cell setup. Cyclic voltammetry was done in quiescent solutions. Argon was then bubbled through the same solution, and the setup was reused to obtain cyclic voltammograms at higher sweep rates. The initial direction of voltammetry was negative, or cathodic, except for solutions containing ferrocene and anything otherwise was noted.Figure5 shows cyclic voltammetry results in DMSO for 1. Two redox couples are evident. Averaging over the sweep rates covered, the values of the formal potentials calculated from the voltammograms were found to be −0.174 V and 0.058 V. Semiderivative analyses gave values of −0.170 V and 0.061 V [30, 31]. These couples are consistent with one electron oxidations and reductions between the +3, +2, and +1 oxidation states of Ru.Figure 5
Cyclic voltammetry.At 100 mV/s only, the range was extended anodic of the open circuit potential at which all the cyclic voltammetry experiments were begun. Two other redox couples were observed: a small pair of redox peaks centered at 0.294 V and a large pair of peaks centered at 0.539 V.


## 7. Conclusion

A new class of water-soluble ruthenium-based anticancer drugs of pyrazole ligand has been synthesized. The complex was completely characterized by various spectroscopic and X-ray studies. Our experimental observations of the hydrolysis of compound2 established that it hydrolyzed stepwise. This is in line with NAMI-A hydrolysis. DFT calculations have also established that in the neutral compound 2, first DMSO is exchanged, followed by chloride ion.



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