# Modeling Neurological Disorders by Human Induced Pluripotent Stem Cells

Authors: Tanut Kunkanjanawan; Parinya Noisa; Rangsun Parnpai
Journal: Journal of Biomedicine and Biotechnology
 (2011)

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## Abstract

Studies of human brain development are critical as research on neurological disorders have been progressively advanced. However, understanding the process of neurogenesis through analysis of the early embryo is complicated and limited by a number of factors, including the complexity of the embryos, availability, and ethical constrains. The emerging of human embryonic stem cells (hESCs) and induced pluripotent stem cells (iPSCs) has shed light of a new approach to study both early development and disease pathology. The cells behave as precursors of all embryonic lineages; thus, they allow tracing the history from the root to individual branches of the cell lineage tree. Systems for neural differentiation of hESCs and iPSCs have provided an experimental model that can be used to augmentin vitro studies of in vivo brain development. Interestingly, iPSCs derived from patients, containing donor genetic background, have offered a breakthrough approach to study human genetics of neurodegenerative diseases.  This paper summarizes the recent reports of the development of iPSCs from patients who suffer from neurological diseases and evaluates the feasibility of iPSCs as a disease model. The benefits and obstacles of iPSC technology are highlighted in order to raising the cautions of misinterpretation prior to further clinical translations.


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## Body

## 1. Introduction

Neurodegenerative and neurodevelopmental diseases are the important causes of disability and death of humans. Although the rapid development of novel diagnostic methods and therapeutic approaches has been in progress, there is no emergence of an efficient way to prevent and cure these diseases. Due to the lack of a suitable disease model and an adequate number of biopsy brain samples, the genuine etiology and pathology of many nervous diseases are unidentified. Transgenic animals for disease modeling were developed, and many of them show disease pathology and response to treatment trials. For example, the Alzheimer’s disease (AD) mice, which overexpress familial type AD-associated genes, amyloid precursor protein (APP), Presenilin1/2 (PS), and Tau, show clinical pathologies of AD, such as progressive memory loss, extracellular plaque, and neurofibrillary tangles [1]. Although animal model continues to produce key insights into disease mechanisms, these systems have limitations that could be potentially overcome by human cellular models of diseases. Many transgenic murines do not faithfully mirror the respective human pathophysiology. For example, a mouse model for Down syndrome (DS) fails to recapitulate the human cranial abnormalities, a common associated feature of trisomy 21 [2]. This may suggest that the mouse model for human trisomy 21 is not fully appropriate, and an alternative system is necessary for exploring disease mechanisms [3].Human embryonic stem cells (hESCs) are isolated from the inner cells mass of blastocyst stage embryos which can be further differentiated into three embryonic germ layers: ectoderm, mesoderm, and endoderm [4]. Recent results indicate that the differentiation of hESCs in culture follows the hierarchical sets of signals that regulate embryonic development in the generation of the germ layers and specific cell types [5]. Establishment of in vitro differentiation systems that recapitulate normal development will form the foundation for dissecting molecular interactions. The ability to access and manipulate populations representing early developmental stages in the hESC differentiation cultures provides a new approach for addressing questions of lineage commitment, such as neurodevelopment [6]. This system provides a model of human brain development that enables manipulations comparable to those carried out in other organisms such as Xenopus and zebrafish, but in human species context. In order to derive disease-specific hESCs, there are two conventional methods which are (1) the isolation of single blastomere from morula stage embryos which are entered into preimplantation genetic diagnostic (PGD) program and (2) the derivation of hESCs by somatic cell nuclear transfer (SCNT) [7]. PGD is a clinical procedure for screening fertilized embryos at morula stage in order to ensure disease-free embryos [8]. The embryos that are diagnosed as disease threatened will be either discarded or donated for research [9]. On the other hand, SCNT is an alternative approach to generate patient-specific hESCs. The nucleus from the somatic donor cells is transplanted into the enucleated oocytes by micromanipulator, leading to union of both components [10]. However, the success rate of hESC establishment form PGD and SCNT is considerably low and technicaly demanding. Moreover, SCNT is limited by the lack of oocyte donors and ethical issues; causing genomic reprogramming by nuclear transfer has not been extensively demonstrated in human [11–13].Because of the multiple drawbacks of hESCs and the derivation approaches, another pluripotent cells could be derived from somatic cells by the forced expression of key pluripotent transcription factors of hESCs (OCT4, c-MYC, SOX2, and KLF4), and these cells were named as induced pluripotent stem cells (iPSCs) [14, 15]. After the discovery of iPSCs by Takahashi et al. in 2007,  the trend of disease modeling has intensively focused on iPSC technology as this technique could generate pluripotent cells from diagnosed living patients and be further differentiated into disease-relevant cell types for drugs screening and disease development monitoring [16]. Thus, this paper will discuss the current success of iPSC derivation from neurological disease patients which will ultimately lead to an answer of pathological causes and a novel pharmaceutical product to treat those diseases.


## 2. Insights: The Properties and Origins of  Human Pluripotent Stem Cells

Primarily, hiPSCs have been characterized by following the characteristics of hESCs. These two pluripotent cell types display several similar properties, such as their morphology, self-renewal, differentiation capacity, cell surface antigens, and gene expression profile [16]. They are immortalized cells and could be differentiated into all primary embryonic germ layers, including gut epithelium, cartilage, bone, smooth muscle, striated muscle, neural epithelium, embryonic ganglia, and stratified squamous epithelium [17]. hESCs and iPSCs show the high expression of telomerase reverse transcriptase [18] as well as the stage specific embryonic antigens (SSEAs), which are SSEA-3, SSEA-4, TRA-1-60 and TRA-1-81. Interestingly, it was  demonstrated that the expression pattern of these surface antigens is present in the ICM of human blastocysts, providing evidence that hESCs continue to resemble the cells in the ICM [19]. Self-renewal and pluripotency of hESCs and iPSCs are mainly controlled by intrinsic transcription factors. The best-studied intrinsic factors are Oct4, Nanog, and Sox2, which play essential roles in both mESCs and hESCs. The downregulation of these factors leads to hESC differentiation [20–22]. The significant roles of these transcription factors in pluripotency have been confirmed by the ability to reprogram human fibroblasts to become pluripotent cells [16]. As exhibiting pluripotency, when embryoid body is formed from hESCs and iPSCs, the cell aggregates show similar structure to early stage of human embryos which consist of all three embryonic germ layers [23]. hESCs can also form teratomas following the injection of cells into nude mice, which reflects their in vivo differentiation capability [24, 25]. Even if hESCs have been considered a cell resource for regenerative medicine, there are several controversial issues needed to be taken into account, including ethical constrains of embryo destruction, graft-versus-host disease, and the difficulty to obtain diseased-specific cell lines. Since the discovery of iPSCs by using dermal fibroblasts, scientists have extended to various origins of starting cells such as neural stem cells [26], adipose-derived mesenchymal stem cells [27], umbilical cord blood [28], and T-cell lymphocyte [29, 30]. For these reasons, iPSCs are suggested to become a new paradigm for generating patient-specific pluripotent stem cells to model neurological genetic diseases.


## 3. hiPSCs Breakthrough: The Systems for  Neurological Disease Modeling

In clinical research, it is hard to obtain brain tissues from either live or dead patients for investigating diseases. This difficulty has limited the knowledge of human neurological abnormalities and pathology progression during the course of diseases [31]. Reprogramming of somatic cells from nervous disorder patients by using iPSC technology has provided an opportunity to generate disease-harboring pluripotent cells which can be differentiated into neural cells for studying disease development. Dermal fibroblast cells are widely used as starting cells for somatic cell nuclear reprogramming. The differentiation propensity of iPSCs toward specific cell types, such as neural cells, is marked by the epigenetic memory of starting cells [32]. The current established iPSCs derived from neurodevelopment and neurodegenerative disorder patients are summarized in Table 1, while the similarities and differences of ESCs and iPSCs are illustrated in Table 2. Categorizing by types of diseases, neurological disease-specific iPSCs could be divided into two major groups which are early-onset neurodevelopment diseases and late-onset neurodegenerative diseases. Neurodevelopment diseases are mostly triggered by abnormal gene expression, while neurodegenerative diseases typically resulted from both abnormal gene expression and environment factors. It is an advantage of iPSCs to mimic neurodevelopment disorders since neural cells derived from iPSCs display an early stage of disease development [31, 33]. However, immature phenotypes of neurons derived from iPSCs hinder the applications of modeling for late-onset diseases [33]. It is important to note that although some neurons derived from iPSCs predominantly exhibited disease pathology and responded to pharmaceutical agents [31, 34, 35], a number of neural cells from certain diseased iPSCs did not show neuronal pathology, such as Parkinson’s disease [35, 36], Huntington’s disease [37], and amyotrophic lateral sclerosis [38]. Specific gene mutations or environmental stress inducers are needed in order to accelerate the pathology of those diseases [35, 36].Table 1
List of reported hiPSC disease models.
DiseaseTarget cellPotential to be disease modelDrug testReferenceSuccessful differentiated into target cell typeNeuronal pathologyEarly-onset neurological disordersFragile X syndromeNDNDLoss of FMR1 expressionND[44]Prader-Willi syndromeNeuronsYesImprint disorderND[48, 65]Rett’s syndromeNeuronsYesLoss of synapses, reduced spine density, smaller soma sizeYes[31]Familial dysautonomiaNeural crest cellsYesLoss of neural crest cellsYes[54]Friedreich’s ataxaiaMotor neuronYesFXNgene repressionND[61]Angelman’s syndromeNeuronsYesImprint disorderND[65]Down’s syndromeNeuronNDNDND[69]Spinal muscular atrophyMotor neuronsYesLoss of neuron formation, loss ofSMN gene expressionYes[34]Late-onset neurological disordersAmyotrophic lateral sclerosis (ALS)Motor neuronsNDNot shownND[38]Huntington’s disease (HD)Striatal neuronsYesNot shownND[37]Parkinson’s disease (PD)Dopaminergic neuronsYesNot shownND[35, 36]Alzheimer’s disease (AD)Cholinergic neuronsYesIncrease ratio of Aβ42 to Aβ40Yes[87]*ND: not determined.Table 2
Summarizing the similarities and differences of ESC and iPSC for disease modeling.
hESCsiPSCsReferenceSourceICMAdult somatic cell[4, 15]Basic pluripotent characteristicsAlkaline phosphatase activityYesYes[4, 15]Pluripotent genes expressionYesYes[4, 15]Pluripotent cell surface markersYesYes[4, 15]In vitroand in vivomultilinage differentiationYesYes[4, 15]Transcriptomic expressionNormal pluripotent gene expressionPluripotent gene expression but not all genes similar to hESCs and depend on reprogramming technique[36, 100]Proteomic expressionNormal proteomic expressionNot all proteomic expression identical to hESCs[101]Disease modelingFrom PGD diagnosed embryo in IVF clinicFrom diagnosed adult patient somatic cell[88, 102]Disease-related expression characteristicYesYes[88, 102]


## 4. The Current Available iPSCs from Monogenic Early-Onset Neurological Disorders

### 4.1. Fragile X Syndrome

Fragile X (FX) syndrome is an X-linked dominant disorder which is the most common form of inherited mental retardation [39]. The cognitive, behavioral, and physical phenotypes vary by sex in which males are severely affected due to the X-linked inheritance of mutation [40]. This disease caused by no expression of the fragile X mental retardation 1 (FMR1) gene, resulting from untranslation of CGG triplet repeat expansion in the 5′ UTR region of the gene [41]. According to the loss of FMR1 protein, developmental retardation is significantly found in the cerebral cortex. Quantitative examination of human brain autopsy exhibits abnormal dendritic spine lengths, and shapes are more immature when compared with normal age match controls [42, 43]. Fragile X syndrome iPSCs (FX-iPSCs) were generated from 3 FX-affected males and compared the regulation of FMR1 transcription to human FX-ESCs. FX-iPSCs cloned demonstrated typical characteristic of pluripotent stem cells [44]. Surprisingly, although the mutant FMR1 gene is expressed in FX-ESCs, FMR1 gene expression remains inactive in FX-iPSCs. In addition, even somatic FX-fibroblasts were pretreated with demethylating agent 5-azacytidine prior to reprogramming; FMR1 gene remained transcriptionally silent in all FX-iPSCs clones. This hypothesized that other epigenetic mechanisms may affect the aberrant expression of FMR1 gene. This brought the attention that the differentiation of FX-iPSCs into neurons may not facilitate pathological study of fragile X syndrome [44]. Further examination of multiple factors, such as epigenetic factors, is required in order to improve FX-iPSC properties, in particular gene expression pattern [33].


### 4.2. Prader-Willi Syndrome (PWS)

Prader-Willi syndrome (PWS) is a neurological disorder characterized by neonatal hypotonia, failure to thrive, hypogonadism and short stature, mild-to-moderate mental retardation, and compulsive hyperphagia in early childhood that leads to morbid obesity [45]. PWS and AS are closely related in which the imprinted genes on the proximal long arm of chromosome 15 are affected. PWS is affected by the lack of gene expression in paternal chromosome, 15q11-q13, while genes in maternal chromosome are repressed by DNA methylation [46]. The definition of etiology of this disease is unclear, but a deficiency of the paternally expressed SNORD116 snoRNAs can result in a PWS or PWS-like phenotypes [47]. PWS-iPSCs were generated from fibroblast of diagnosed PWS patients by using retrovirus producing 4 exogenous transcription factors. PWS-iPSCs showed positive-to-standard hESC characteristics: cell surface antigens, endogenous hESC transcription factors, and teratoma formation. Moreover, the methylation status of proximal promoter, OCT4and NANOG, displayed extensive DNA demethylation in PWS iPSCs clone at a comparable level to hESCs. PWS-iPSCs displayed a normal number of chromosomes, but DNA segment translocation was observed from chromosome 15 to chromosome 4 [46, 48]. The expression of SNORD116 analyzed by quantitative PCR demonstrated that the high expression of SNORD116 was observed in normal fibroblast and normal iPSCs, but PWS fibroblasts and PWS-iPSCs showed low expression [48]. It is suggested that PWS-iPSCs did not display normal expression pattern of imprinted genes which are crucial for disease determination [48]. The results supported the hypothesis that genomic imprinting is not susceptible to nuclear reprogramming and refractory to acquired de novoalteration.


### 4.3. Rett’s Syndrome

Rett’s syndrome is an inherited neurological developmental disorder which is associated with X-linked gene inheritance encoding methyl-CpG-binding protein 2 (MeCP2) [49]. MeCP2 is located in the nucleus of many types of CNS neurons and functions as a transcriptional repressor by associating with chromatin remodeling complexes [50]. This disease is characterized by a variety of clinical manifestations, indicating developmental arrest and psychomotor repression. The patients have mental retardation, epilepsy, respiratory dysfunction, stereotypic hand movement, growth retardation, scoliosis, and spasticity [51]. RTT-iPSCs were generated from four distinct MeCP2 mutation fibroblasts, using retroviral reprogramming vectors. The resulting cells were pluripotent as WT-iPSCs. Immunocytochemistry results against trimethylated histone 3 lysine 27 (m3H3K27) were positively marked at the nucleus of some, but not all, undifferentiated RTT-iPSCs, similar to the control hESCs. This showed that the memory of the previous chromatin inactivation state had been erased. By immunostaining, RTT fibroblasts and RTT-iPSCs-derived neuronal population reduced MeCP2 protein levels. Moreover, the half reduction of MeCP2 protein is consistent with the random X-inactivation. It was noted that X-inactivation was reset in RTT-iPSCs and restored randomly during neuronal differentiation. This caused the variation of MeCP2 protein level, reminiscent   of the brain of RTT patients [31]. After 8 weeks of neural differentiation, the number of VGLUT-positive glutamatergic neurons from RTT-iPSCs was less than that derived from either to WT-iPSCs or hESCs. This phenotype could be found when the WT-iPSCs knocked down the expression of MeCP2, while the overexpression of MeCP2 could increase the number of VGLUT1-positive neurons derived from RTT-iPSCs. Morphological analysis of RTT neurons demonstrated that the number of spine of RTT neuritis and cell soma sizes was reduced when compared to WT neurons. Interestingly, high concentration of aminoglycoside antibiotic, such as gentamicin, could increase MeCP2 protein and, consequently, the number of glutamatergic neurons [31]. This result suggested that RTT-iPSCs were providing the excellent disease modeling for RETT syndrome and could confirm the pathology of the disease.


### 4.4. Familial Dysautonomia

Familial dysautonomia (FD) or Riley Day Syndrome is an autosomal recessive disorder, characterized by the developmental loss of neurons from the sensory and autonomic nervous system [49, 50]. FD is caused by the mutation in a splice site of the I-kB kinase complex-associated protein (IKBKAP) gene, which causes tissue-specific exon skipping and expression of a truncated mRNA transcript [52]. Reduced levels of normal IKAP protein are associated with a defect in cell motility [53]. FD-iPSCs were generated from 10-year-old female FD patients using lentiviral vector encoding 4 classical vectors [16]. Genetic defect, homozygous 2507+6T>C, was confirmed in FD-iPSCs by sequencing and IKBKAP analysis using RT-PCR. Gene expression profile of neural crest derived from FD-iPSCs showed that, among the 20 most deceased transcripts in FD neural crest precursors, many genes were involved in peripheral neurogenesis and neural differentiation. Moreover, the number of paxillin-positive cells was reduced in FD-iPSCs-derived neural crest progenitors, referring to the aberration of cell spreading and migration [54]. They have reported that plant hormone kinetin could reduce the levels of the mutant IKBKAP splice in FD cells [54–56]. Epigallocatechin gallate and tocotrinal were exposed to FD-iPSCs-derived neural crest precursors and showed dramatic reduction of the mutant IKBKAPsplice form; however, the hormone did not show a significant increase in the expression of neurogenic markers or improve the migration behavior [54].


### 4.5. Friedreich’s Ataxia

Friedreich’s ataxia (FRDA), the most common inherited ataxia, is associated with a mutation of thefrataxingene on chromosome 9 [57, 58]. The incidence of mutations was often found in an unstable expansion of GAA repeats in the first intron. The level of GAA repeats is correlated with the downregulation of gene expression and the progression of disease severity [58]. The cardinal features of FRDA are ataxia of all four limbs, cerebella dysarthria, lack of reflexes, sensory loss, and pyramidal signs. In addition, frataxin insufficiency leaded to skeletal deformities, cardiomyopathy, and the risk of diabetes [57, 58]. Although mice models of this disease are available, they do not fully recapitulate gene silencing and frataxin protein level [59, 60]. FRDA-iPSCs were established by retroviral transduction with 4 classical transcription factors [61] and showed typical characteristics of pluripotent cells as well as retaining the marked repression of FXNmRNA. FRDA-iPSCs still repeated the GAA expansion in both parental pathogenic alleles. Furthermore, GAA repeat lengths in FRDA-iPSCs change overtime in culture. The role of mismatch repair (MMR) enzyme MSH2 was investigated in FRDA-iPSCs. mRNA expression and western blotting analysis of FRDA-iPSCs showed large increases in MSH2 level when compared with donor fibroblast. The FRDA-iPSCs have been expected to provide a valuable modeling to study repeat instability mechanism [61]. Differentiations to disease-specific cell types, such as neurons, cardiomyocytes, and pancreatic beta cells, for studing effect of abnormality are required. Moreover, the novel drugs or therapeutic protocols are expected to develop by using this FRDA-iPSCs modeling.


### 4.6. Angelman’s Syndrome

Angelman’s syndrome (AS) is clinically delineated by the combination of seizure, absent speech, and hypermotoric and ataxic movements [62, 63]. AS patients exhibit a predisposition toward apparent happiness and paroxysms of laughter, and this finding helps to distinguish AS from others involving severe developmental handicap [63]. AS is a severe genetic disorder, caused by mutation or deletion of the maternally inherited UBE3Agene in chromosome 15. This gene encodes an HECT (homologous to E6-associated protein C terminal) domain E3 ubiquitin ligase [62]. The combination of epigenetic silencing of paternal allele and gene inactivation of maternal allele of UBE3A leads to chiefly incomplete loss of UBE3A protein selectively in most neurons in the brain [64]. Recently, AS-iPSCs lines were established from fibroblasts of two AS patients, who carried maternally inherited deletions of chromosome 15q11-q13 [65]. The methylation imprinting was assessed and showed similar patterns to patient’s fibroblasts. Only an unmethylated paternal allele was observed in AS-iPSCs. Neurons and astrocytes derived from AS-iPSCs were matured in vitro and exhibited train of action potential and excitatory postsynaptic current. The levels of UBE3A expression were significantly reduced in both of AS-iPSCs- and AS-iPSCs-derived neurons, while normal iPSCs or iPSCs-derived neurons maintain the level of UBE3A. There is evidence suggesting that brain-specific UBE3A repression is mediated by a snoRNA [47, 66, 67]. Northern blot hybridization used to assess expression of snoRNAs, SNORD 116and SNORD 115, demonstrated that SNORD 116 is expressed in both iPSCs and iPSC-derived neurons derived from normal or AS individuals, whereas SNORD115expression is restricted to iPSC-derived neurons.  It is suggested  that the neuron-specific repression of UBE3Amay occur relatively late during neurogenesis, coincident with the upregulation of SNORD 116and SNORD115 during neural differentiation. This finding proposed that the methylation imprinting is difficult to be reprogrammed, and the epigenetic status is resistant to a global erasure [65]. This AS-iPSC model recapitulates the tissue-specific pattern of UBE3A imprinting; thus, it provides an important tool to address the timing and mechanisms controlling epigenetic status of UBE3A during human neural development. In addition, AS-iPSCs-derived neurons will also be a useful system for the characterization of the physiological abnormalities of the disease at a cellular level [65].


### 4.7. Down’s Syndrome

Down’s syndrome (DS) is a developmental disorder, caused by trisomy of chromosome 21. The key manifestations of the disease are mental retardation, craniofacial abnormalities, and clinical defections of several systems such as heart, gut, and immune system [68]. However, the trisomy of chromosome 21 in mice did not result in disease symptoms which means that mouse is not a suitable system to model AD pathology [2]. DS-iPSCs were established from DS patient fibroblasts by using either four (Oct4, SOX2,KLF4, and c-MYC), or three (without c-MYC) reprogramming factors. DS-iPSCs showed the characteristics of trisomy 21 anomaly by chromosomal G-banding analysis, but none of differentiation studies have been conducted [69]. DS-iPSCs are not only attractive for the investigation of DS development, but also interesting for other DS-related diseases such as AD, which is a frequently coincident disease in DS patients.


### 4.8. Spinal Muscular Atrophy

Spinal muscular atrophy (SMA), an autosomal recessive disease, is one of the leading genetic causes of infant mortality due to the specific loss of alpha motor neurons in the spinal cord [70, 71]. Clinically, SMA is caused by the homozygous deletion of survivor motor neuron 1 and 2 (SMN1and SMN2), and the disease severity spans a broad spectrum, based on the onset period [71]. SMN2-derived pre-mRNA transcripts could be alternatively spliced, causing a single nucleotide difference, a silent cytosine-to-thymine (C-T) transition within exon 7, from the normal mRNA. This single nucleotide change restricts the length of SMN2 protein and translates to a dysfunction protein, named SMN Δ7. Patients with high copy number of SMN2 producing more full length of SMN by SMN2, are observed in milder form of the disease [72]. SMA-iPSCs were established from a type I SMA patient and his unaffected mother. iPSCs were generated from primary fibroblasts with lentiviral constructs encoding Oct4, SOX2, NANOG, and LIN28.SMA-iPSCs showed pluripotent characteristics like hESCs and were not different from WT-iPSCs. iPSC and fibroblast SMN RNA were analyzed. RT-PCR analysis showed that SMA-iPSCs and SMN fibroblast have lower levels of SMN RNA than WT-iPSCs and WT fibroblast. Moreover, qRT-PCR result confirmed the significantly reduced level of full-length SMNtranscript in SMA-iPSCs, 32–39% reduction compared to wild type. SMA-iPSCs were differentiated into motor neurons which are pathological specific cell types. Interestingly, motor  neurons derived from SMA-iPSCs group showed significantly fewer number and reduced size than motor neurons derived from WT-iPSCs. However, there was no difference in total number of Tuj1-positive neurons in either WT or SMA groups. This result suggested that SMA has a specific influence on motor neuron, and the disease phenotype selectively hinders motor neuron production and/or increases motor neuron degeneration at later time point. Neuron and astrocytes derived from SMA-iPSCs significantly increased the level of intranuclear gems, intranuclear form of aggregated SMN protein, after valproic acid and tobramycin, when compared to untreated group [34]. The results indicated that neural cells derived from SMA-iPSCs responded to drug screening and are able to be used as the disease model for further disease investigation.


## 4.1. Fragile X Syndrome

Fragile X (FX) syndrome is an X-linked dominant disorder which is the most common form of inherited mental retardation [39]. The cognitive, behavioral, and physical phenotypes vary by sex in which males are severely affected due to the X-linked inheritance of mutation [40]. This disease caused by no expression of the fragile X mental retardation 1 (FMR1) gene, resulting from untranslation of CGG triplet repeat expansion in the 5′ UTR region of the gene [41]. According to the loss of FMR1 protein, developmental retardation is significantly found in the cerebral cortex. Quantitative examination of human brain autopsy exhibits abnormal dendritic spine lengths, and shapes are more immature when compared with normal age match controls [42, 43]. Fragile X syndrome iPSCs (FX-iPSCs) were generated from 3 FX-affected males and compared the regulation of FMR1 transcription to human FX-ESCs. FX-iPSCs cloned demonstrated typical characteristic of pluripotent stem cells [44]. Surprisingly, although the mutant FMR1 gene is expressed in FX-ESCs, FMR1 gene expression remains inactive in FX-iPSCs. In addition, even somatic FX-fibroblasts were pretreated with demethylating agent 5-azacytidine prior to reprogramming; FMR1 gene remained transcriptionally silent in all FX-iPSCs clones. This hypothesized that other epigenetic mechanisms may affect the aberrant expression of FMR1 gene. This brought the attention that the differentiation of FX-iPSCs into neurons may not facilitate pathological study of fragile X syndrome [44]. Further examination of multiple factors, such as epigenetic factors, is required in order to improve FX-iPSC properties, in particular gene expression pattern [33].


## 4.2. Prader-Willi Syndrome (PWS)

Prader-Willi syndrome (PWS) is a neurological disorder characterized by neonatal hypotonia, failure to thrive, hypogonadism and short stature, mild-to-moderate mental retardation, and compulsive hyperphagia in early childhood that leads to morbid obesity [45]. PWS and AS are closely related in which the imprinted genes on the proximal long arm of chromosome 15 are affected. PWS is affected by the lack of gene expression in paternal chromosome, 15q11-q13, while genes in maternal chromosome are repressed by DNA methylation [46]. The definition of etiology of this disease is unclear, but a deficiency of the paternally expressed SNORD116 snoRNAs can result in a PWS or PWS-like phenotypes [47]. PWS-iPSCs were generated from fibroblast of diagnosed PWS patients by using retrovirus producing 4 exogenous transcription factors. PWS-iPSCs showed positive-to-standard hESC characteristics: cell surface antigens, endogenous hESC transcription factors, and teratoma formation. Moreover, the methylation status of proximal promoter, OCT4and NANOG, displayed extensive DNA demethylation in PWS iPSCs clone at a comparable level to hESCs. PWS-iPSCs displayed a normal number of chromosomes, but DNA segment translocation was observed from chromosome 15 to chromosome 4 [46, 48]. The expression of SNORD116 analyzed by quantitative PCR demonstrated that the high expression of SNORD116 was observed in normal fibroblast and normal iPSCs, but PWS fibroblasts and PWS-iPSCs showed low expression [48]. It is suggested that PWS-iPSCs did not display normal expression pattern of imprinted genes which are crucial for disease determination [48]. The results supported the hypothesis that genomic imprinting is not susceptible to nuclear reprogramming and refractory to acquired de novoalteration.


## 4.3. Rett’s Syndrome

Rett’s syndrome is an inherited neurological developmental disorder which is associated with X-linked gene inheritance encoding methyl-CpG-binding protein 2 (MeCP2) [49]. MeCP2 is located in the nucleus of many types of CNS neurons and functions as a transcriptional repressor by associating with chromatin remodeling complexes [50]. This disease is characterized by a variety of clinical manifestations, indicating developmental arrest and psychomotor repression. The patients have mental retardation, epilepsy, respiratory dysfunction, stereotypic hand movement, growth retardation, scoliosis, and spasticity [51]. RTT-iPSCs were generated from four distinct MeCP2 mutation fibroblasts, using retroviral reprogramming vectors. The resulting cells were pluripotent as WT-iPSCs. Immunocytochemistry results against trimethylated histone 3 lysine 27 (m3H3K27) were positively marked at the nucleus of some, but not all, undifferentiated RTT-iPSCs, similar to the control hESCs. This showed that the memory of the previous chromatin inactivation state had been erased. By immunostaining, RTT fibroblasts and RTT-iPSCs-derived neuronal population reduced MeCP2 protein levels. Moreover, the half reduction of MeCP2 protein is consistent with the random X-inactivation. It was noted that X-inactivation was reset in RTT-iPSCs and restored randomly during neuronal differentiation. This caused the variation of MeCP2 protein level, reminiscent   of the brain of RTT patients [31]. After 8 weeks of neural differentiation, the number of VGLUT-positive glutamatergic neurons from RTT-iPSCs was less than that derived from either to WT-iPSCs or hESCs. This phenotype could be found when the WT-iPSCs knocked down the expression of MeCP2, while the overexpression of MeCP2 could increase the number of VGLUT1-positive neurons derived from RTT-iPSCs. Morphological analysis of RTT neurons demonstrated that the number of spine of RTT neuritis and cell soma sizes was reduced when compared to WT neurons. Interestingly, high concentration of aminoglycoside antibiotic, such as gentamicin, could increase MeCP2 protein and, consequently, the number of glutamatergic neurons [31]. This result suggested that RTT-iPSCs were providing the excellent disease modeling for RETT syndrome and could confirm the pathology of the disease.


## 4.4. Familial Dysautonomia

Familial dysautonomia (FD) or Riley Day Syndrome is an autosomal recessive disorder, characterized by the developmental loss of neurons from the sensory and autonomic nervous system [49, 50]. FD is caused by the mutation in a splice site of the I-kB kinase complex-associated protein (IKBKAP) gene, which causes tissue-specific exon skipping and expression of a truncated mRNA transcript [52]. Reduced levels of normal IKAP protein are associated with a defect in cell motility [53]. FD-iPSCs were generated from 10-year-old female FD patients using lentiviral vector encoding 4 classical vectors [16]. Genetic defect, homozygous 2507+6T>C, was confirmed in FD-iPSCs by sequencing and IKBKAP analysis using RT-PCR. Gene expression profile of neural crest derived from FD-iPSCs showed that, among the 20 most deceased transcripts in FD neural crest precursors, many genes were involved in peripheral neurogenesis and neural differentiation. Moreover, the number of paxillin-positive cells was reduced in FD-iPSCs-derived neural crest progenitors, referring to the aberration of cell spreading and migration [54]. They have reported that plant hormone kinetin could reduce the levels of the mutant IKBKAP splice in FD cells [54–56]. Epigallocatechin gallate and tocotrinal were exposed to FD-iPSCs-derived neural crest precursors and showed dramatic reduction of the mutant IKBKAPsplice form; however, the hormone did not show a significant increase in the expression of neurogenic markers or improve the migration behavior [54].


## 4.5. Friedreich’s Ataxia

Friedreich’s ataxia (FRDA), the most common inherited ataxia, is associated with a mutation of thefrataxingene on chromosome 9 [57, 58]. The incidence of mutations was often found in an unstable expansion of GAA repeats in the first intron. The level of GAA repeats is correlated with the downregulation of gene expression and the progression of disease severity [58]. The cardinal features of FRDA are ataxia of all four limbs, cerebella dysarthria, lack of reflexes, sensory loss, and pyramidal signs. In addition, frataxin insufficiency leaded to skeletal deformities, cardiomyopathy, and the risk of diabetes [57, 58]. Although mice models of this disease are available, they do not fully recapitulate gene silencing and frataxin protein level [59, 60]. FRDA-iPSCs were established by retroviral transduction with 4 classical transcription factors [61] and showed typical characteristics of pluripotent cells as well as retaining the marked repression of FXNmRNA. FRDA-iPSCs still repeated the GAA expansion in both parental pathogenic alleles. Furthermore, GAA repeat lengths in FRDA-iPSCs change overtime in culture. The role of mismatch repair (MMR) enzyme MSH2 was investigated in FRDA-iPSCs. mRNA expression and western blotting analysis of FRDA-iPSCs showed large increases in MSH2 level when compared with donor fibroblast. The FRDA-iPSCs have been expected to provide a valuable modeling to study repeat instability mechanism [61]. Differentiations to disease-specific cell types, such as neurons, cardiomyocytes, and pancreatic beta cells, for studing effect of abnormality are required. Moreover, the novel drugs or therapeutic protocols are expected to develop by using this FRDA-iPSCs modeling.


## 4.6. Angelman’s Syndrome

Angelman’s syndrome (AS) is clinically delineated by the combination of seizure, absent speech, and hypermotoric and ataxic movements [62, 63]. AS patients exhibit a predisposition toward apparent happiness and paroxysms of laughter, and this finding helps to distinguish AS from others involving severe developmental handicap [63]. AS is a severe genetic disorder, caused by mutation or deletion of the maternally inherited UBE3Agene in chromosome 15. This gene encodes an HECT (homologous to E6-associated protein C terminal) domain E3 ubiquitin ligase [62]. The combination of epigenetic silencing of paternal allele and gene inactivation of maternal allele of UBE3A leads to chiefly incomplete loss of UBE3A protein selectively in most neurons in the brain [64]. Recently, AS-iPSCs lines were established from fibroblasts of two AS patients, who carried maternally inherited deletions of chromosome 15q11-q13 [65]. The methylation imprinting was assessed and showed similar patterns to patient’s fibroblasts. Only an unmethylated paternal allele was observed in AS-iPSCs. Neurons and astrocytes derived from AS-iPSCs were matured in vitro and exhibited train of action potential and excitatory postsynaptic current. The levels of UBE3A expression were significantly reduced in both of AS-iPSCs- and AS-iPSCs-derived neurons, while normal iPSCs or iPSCs-derived neurons maintain the level of UBE3A. There is evidence suggesting that brain-specific UBE3A repression is mediated by a snoRNA [47, 66, 67]. Northern blot hybridization used to assess expression of snoRNAs, SNORD 116and SNORD 115, demonstrated that SNORD 116 is expressed in both iPSCs and iPSC-derived neurons derived from normal or AS individuals, whereas SNORD115expression is restricted to iPSC-derived neurons.  It is suggested  that the neuron-specific repression of UBE3Amay occur relatively late during neurogenesis, coincident with the upregulation of SNORD 116and SNORD115 during neural differentiation. This finding proposed that the methylation imprinting is difficult to be reprogrammed, and the epigenetic status is resistant to a global erasure [65]. This AS-iPSC model recapitulates the tissue-specific pattern of UBE3A imprinting; thus, it provides an important tool to address the timing and mechanisms controlling epigenetic status of UBE3A during human neural development. In addition, AS-iPSCs-derived neurons will also be a useful system for the characterization of the physiological abnormalities of the disease at a cellular level [65].


## 4.7. Down’s Syndrome

Down’s syndrome (DS) is a developmental disorder, caused by trisomy of chromosome 21. The key manifestations of the disease are mental retardation, craniofacial abnormalities, and clinical defections of several systems such as heart, gut, and immune system [68]. However, the trisomy of chromosome 21 in mice did not result in disease symptoms which means that mouse is not a suitable system to model AD pathology [2]. DS-iPSCs were established from DS patient fibroblasts by using either four (Oct4, SOX2,KLF4, and c-MYC), or three (without c-MYC) reprogramming factors. DS-iPSCs showed the characteristics of trisomy 21 anomaly by chromosomal G-banding analysis, but none of differentiation studies have been conducted [69]. DS-iPSCs are not only attractive for the investigation of DS development, but also interesting for other DS-related diseases such as AD, which is a frequently coincident disease in DS patients.


## 4.8. Spinal Muscular Atrophy

Spinal muscular atrophy (SMA), an autosomal recessive disease, is one of the leading genetic causes of infant mortality due to the specific loss of alpha motor neurons in the spinal cord [70, 71]. Clinically, SMA is caused by the homozygous deletion of survivor motor neuron 1 and 2 (SMN1and SMN2), and the disease severity spans a broad spectrum, based on the onset period [71]. SMN2-derived pre-mRNA transcripts could be alternatively spliced, causing a single nucleotide difference, a silent cytosine-to-thymine (C-T) transition within exon 7, from the normal mRNA. This single nucleotide change restricts the length of SMN2 protein and translates to a dysfunction protein, named SMN Δ7. Patients with high copy number of SMN2 producing more full length of SMN by SMN2, are observed in milder form of the disease [72]. SMA-iPSCs were established from a type I SMA patient and his unaffected mother. iPSCs were generated from primary fibroblasts with lentiviral constructs encoding Oct4, SOX2, NANOG, and LIN28.SMA-iPSCs showed pluripotent characteristics like hESCs and were not different from WT-iPSCs. iPSC and fibroblast SMN RNA were analyzed. RT-PCR analysis showed that SMA-iPSCs and SMN fibroblast have lower levels of SMN RNA than WT-iPSCs and WT fibroblast. Moreover, qRT-PCR result confirmed the significantly reduced level of full-length SMNtranscript in SMA-iPSCs, 32–39% reduction compared to wild type. SMA-iPSCs were differentiated into motor neurons which are pathological specific cell types. Interestingly, motor  neurons derived from SMA-iPSCs group showed significantly fewer number and reduced size than motor neurons derived from WT-iPSCs. However, there was no difference in total number of Tuj1-positive neurons in either WT or SMA groups. This result suggested that SMA has a specific influence on motor neuron, and the disease phenotype selectively hinders motor neuron production and/or increases motor neuron degeneration at later time point. Neuron and astrocytes derived from SMA-iPSCs significantly increased the level of intranuclear gems, intranuclear form of aggregated SMN protein, after valproic acid and tobramycin, when compared to untreated group [34]. The results indicated that neural cells derived from SMA-iPSCs responded to drug screening and are able to be used as the disease model for further disease investigation.


## 5. The Established iPSCs for the Polygenic  Late-Onset Neurological Disorders

### 5.1. Amyotrophic Lateral Sclerosis

Amyotrophic lateral sclerosis (ALS) is a progressive disease, characterized by the degeneration of upper, in layer V of the motor cortex, and lower motor neurons, brain stem, and anterior horn of spinal cord. The loss of motor neurons, especially in spinal cord, leads to progressive paralysis and denervation atrophy of striated muscles [73]. Inheritance in familial ALS (FALS) is typically autosomal dominant [74]. The mutation in only one gene, named Cu/Zn superoxide dismutase (SOD1), results in classical inherited ALS [75]. iPSCs were developed by using skin fibroblasts from 82- and 89-year-old FALS patients, who are heterozygous of the rare L144F (Leu144 → Phe) dominant allele of SOD1. FALS-iPSCs showed normal characteristic of pluripotent stem cell like hESCs. FALS-iPSCs were differentiated to mature motor neurons, HB9 and ISLET1/2-positive cells, astrocytes, and GFAP-positive cells. The abnormality of motor neurons and differentiated cells from FALS-iPSCs has been  described [38]. Thus, the expressions of disease characteristics as well as the pathological anomaly of motor neuron needed further investigations, such as persistent of SOD1 mutation in developed iPSCs.


### 5.2. Huntington’s Disease

Huntington’s disease (HD) is characterized by the loss of brain striatal neurons that results from the expansion of a CAG repeat, translated into glutamine and produced mutant huntingtin protein [76]. The pathological change in HD brain is evident by the massive loss of medium spiny neurons (MSNs) in the striatum and loss of neurons in the cortex which results in chorea, dementia, and eventually death [77]. HD-iPSCs line was made from HD patients with 72 repeat CAG nucleotides [37, 69]. Every cell derived from HD-iPSCs, including HD-NSCs and striatal differentiated neurons, contained 72 CAG repeats. HD neural stem cells (HD-NSCs) and striatal neurons could be generated from these HD-iPSCs, but the population of striatal neurons, DARPP-32-positive cells, were dramatically low, approximately 10% of the total neurons. Caspase activity was evaluated after the withdrawal of growth factors for 24 hours. In HD-NSCs, caspase 3/7 activity was stimulated, but not in WT-NSCs [37]. This suggested that HD-iPSCs and their differentiated striatal neurons are a suitable model for HD, and this could be further supported by the comparison with another alternative system in nonhuman primate ESCs [78]. However, the level of huntingtin protein in HD-iPSCs has not yet been demonstrated.


### 5.3. Parkinson’s Disease

Parkinson’s disease is the second most common neurodegenerative disease after Alzheimer’s disease [79]. Currently, there have been identified 6 causative genes in which their mutations are associated with the high incidence of PD. These six genes include α-synuclein, parkin, UCH-LI, PINK1, DJ-1, and LRRK2/dardarin [80]. The manifestations of PD are resting tremor, bradykinesia, rigidity, and gait impairment. The motion difficulty of PD patients is attributed to the loss of dopaminergic (DA) neurons within the substantia nigra (SN), causing the dysfunction of the basal ganglia. The motor symptoms and survival rate of PD patients could be relieved by synthetic dopamine replacement [81]. PD-iPSCs were generated from idiopathic PD patients with either 3 (without c-Myc) or 4 transcription factors by using lentivirus flanked with loxP sites. Thus, these exogenous genes could be later removed by Cre recombinase in order to fabricate the factor-free PD-iPSCs. Not only establishing the pluripotent state, the factor-free PD-iPSCs also showed a close global gene expression profile to hESCs. DA neurons could be generated from PD-iPSCs at a comparable efficiency to non-PD-iPSCs or hESCs [36]. This was suggested due to the short time span of cultured neurons since the onset period of PD patients is approximately over 50 years old. In order to accelerate the disease pathology, the exogenous stimuli, such as an exposure to oxidative stress, neurotoxin, or overexpression of PD-related genes (α-synucleinor LRRK2), may be needed to supplement the culture systems [36]. On the other hand, fibroblasts from monogenic mutation of PD were also reprogrammed to iPSC state. These fibroblasts carried p.G2019S mutation (called G2019S-iPSCs) in the leucine-rich repeat kinese-2(LRRK2) which is the most common PD-related mutation [35]. DA neurons derived from G2019S-iPSCs showed not only the increased expression of key oxidative stress-response gene and α-synuclein protein, but also the high sensitivity to caspase 3 activation and cell-death-causing agents. Moreover, the treatment of cell death inhibitor, ROCK inhibitor, or Y-27632, did not protect G2019S-iPSC-derived DA neurons from hydrogen peroxide or MG-132-mediated caspase 3 activation [35]. The results emphasized the possibility to generate the late-onset neurodegenerative disease models by using disease-related exogenous stimuli and mutant cell lines. However, the solid protocol of disease-specific cell type differentiation and long period maintaining differentiated cell in vitroare needed to develop further investigation.


### 5.4. Alzheimer’s Disease (AD)

Alzheimer’s disease (AD) is known as the most common neurodegenerative disorder in aged people. The AD’s patients show progressive memory retardation and cognition disturbance. The pathology of this disease is neuronal loss in the cerebral cortex accompanied by massive accumulation of amyloid fibril forming senile plaque and hyperphosphorylated tua protein forming neurofibrillary tangle (NFT) [82]. The amyloid fibril is mainly composed of β-amyloid (Aβ) peptide, the 40 and 42 amino acid form (Aβ40 and Aβ42), which is derived from proteolytic cleavage from the amyloid precursor protein (APP) by β- and γ-secretase enzyme activity [83–85]. Accumulation of Aβ plaque, mainly Aβ42, in the brain parenchyma is the initiation of AD pathogenesis and it leads  to the formation of NFT which enhances  degeneration of neurons [84]. Presenilin 1(PS1) and presenilin 2 (PS2) genes encode the major component of γ-secretase which mutated in autosomal-dominant familial Alzheimer’s disease [86]. Mutation in the PS1, PS2, and APP genes is reported the most of familial early-onset cases of AD with high level of Aβ42 production and greater fibrillary amyloid deposits [86]. Recently, iPSCs from fibroblasts of FAD with the PS1 mutation A246E and the PS2 mutation N141I were established by retrovirus transduction with the five factors Oct4, SOX2, Klf4, LIN28, and NANOG [87]. All PS1 and PS2 iPSC clones demonstrated typical characteristics of pluripotent cell when compared with both normal 201B7 iPSC line [15] and the sporadic PD-derived iPSC line which was reprogrammed by the original methods [15]. Both PS1 and PS2 lines were induced to differentiate into neurons. Comparing with a normal control, they showed no difference of the efficiency to generate neurons; however, the ratio of Aβ42 to Aβ40 was significantly elevated in PS1 and PS2 iPSCs-derived neurons. Surprisingly, neither abnormal tau protein accumulation nor tangle formation was detected in FAD-derived neurons. This may result from the short culture period (2 weeks) for tauopathy formation. Not only produced the Aβ which is the pathological hallmark of AD, FAD-derived neurons also responded to γ-secretase inhibitor (compound E) and γ-secretase modulator (compound W) in order to decrease the ratio of Aβ42 to Aβ40. These data highlighted that both PS1 and PS2 iPSC-derived neurons respond to drug treatment as expected and could be useful for a novel drug screening for AD treatment [87]. Nevertheless, neural specific differentiation protocol and long-term culture methods of mature neurons are necessary to enhance dominant disease pathologies.


## 5.1. Amyotrophic Lateral Sclerosis

Amyotrophic lateral sclerosis (ALS) is a progressive disease, characterized by the degeneration of upper, in layer V of the motor cortex, and lower motor neurons, brain stem, and anterior horn of spinal cord. The loss of motor neurons, especially in spinal cord, leads to progressive paralysis and denervation atrophy of striated muscles [73]. Inheritance in familial ALS (FALS) is typically autosomal dominant [74]. The mutation in only one gene, named Cu/Zn superoxide dismutase (SOD1), results in classical inherited ALS [75]. iPSCs were developed by using skin fibroblasts from 82- and 89-year-old FALS patients, who are heterozygous of the rare L144F (Leu144 → Phe) dominant allele of SOD1. FALS-iPSCs showed normal characteristic of pluripotent stem cell like hESCs. FALS-iPSCs were differentiated to mature motor neurons, HB9 and ISLET1/2-positive cells, astrocytes, and GFAP-positive cells. The abnormality of motor neurons and differentiated cells from FALS-iPSCs has been  described [38]. Thus, the expressions of disease characteristics as well as the pathological anomaly of motor neuron needed further investigations, such as persistent of SOD1 mutation in developed iPSCs.


## 5.2. Huntington’s Disease

Huntington’s disease (HD) is characterized by the loss of brain striatal neurons that results from the expansion of a CAG repeat, translated into glutamine and produced mutant huntingtin protein [76]. The pathological change in HD brain is evident by the massive loss of medium spiny neurons (MSNs) in the striatum and loss of neurons in the cortex which results in chorea, dementia, and eventually death [77]. HD-iPSCs line was made from HD patients with 72 repeat CAG nucleotides [37, 69]. Every cell derived from HD-iPSCs, including HD-NSCs and striatal differentiated neurons, contained 72 CAG repeats. HD neural stem cells (HD-NSCs) and striatal neurons could be generated from these HD-iPSCs, but the population of striatal neurons, DARPP-32-positive cells, were dramatically low, approximately 10% of the total neurons. Caspase activity was evaluated after the withdrawal of growth factors for 24 hours. In HD-NSCs, caspase 3/7 activity was stimulated, but not in WT-NSCs [37]. This suggested that HD-iPSCs and their differentiated striatal neurons are a suitable model for HD, and this could be further supported by the comparison with another alternative system in nonhuman primate ESCs [78]. However, the level of huntingtin protein in HD-iPSCs has not yet been demonstrated.


## 5.3. Parkinson’s Disease

Parkinson’s disease is the second most common neurodegenerative disease after Alzheimer’s disease [79]. Currently, there have been identified 6 causative genes in which their mutations are associated with the high incidence of PD. These six genes include α-synuclein, parkin, UCH-LI, PINK1, DJ-1, and LRRK2/dardarin [80]. The manifestations of PD are resting tremor, bradykinesia, rigidity, and gait impairment. The motion difficulty of PD patients is attributed to the loss of dopaminergic (DA) neurons within the substantia nigra (SN), causing the dysfunction of the basal ganglia. The motor symptoms and survival rate of PD patients could be relieved by synthetic dopamine replacement [81]. PD-iPSCs were generated from idiopathic PD patients with either 3 (without c-Myc) or 4 transcription factors by using lentivirus flanked with loxP sites. Thus, these exogenous genes could be later removed by Cre recombinase in order to fabricate the factor-free PD-iPSCs. Not only establishing the pluripotent state, the factor-free PD-iPSCs also showed a close global gene expression profile to hESCs. DA neurons could be generated from PD-iPSCs at a comparable efficiency to non-PD-iPSCs or hESCs [36]. This was suggested due to the short time span of cultured neurons since the onset period of PD patients is approximately over 50 years old. In order to accelerate the disease pathology, the exogenous stimuli, such as an exposure to oxidative stress, neurotoxin, or overexpression of PD-related genes (α-synucleinor LRRK2), may be needed to supplement the culture systems [36]. On the other hand, fibroblasts from monogenic mutation of PD were also reprogrammed to iPSC state. These fibroblasts carried p.G2019S mutation (called G2019S-iPSCs) in the leucine-rich repeat kinese-2(LRRK2) which is the most common PD-related mutation [35]. DA neurons derived from G2019S-iPSCs showed not only the increased expression of key oxidative stress-response gene and α-synuclein protein, but also the high sensitivity to caspase 3 activation and cell-death-causing agents. Moreover, the treatment of cell death inhibitor, ROCK inhibitor, or Y-27632, did not protect G2019S-iPSC-derived DA neurons from hydrogen peroxide or MG-132-mediated caspase 3 activation [35]. The results emphasized the possibility to generate the late-onset neurodegenerative disease models by using disease-related exogenous stimuli and mutant cell lines. However, the solid protocol of disease-specific cell type differentiation and long period maintaining differentiated cell in vitroare needed to develop further investigation.


## 5.4. Alzheimer’s Disease (AD)

Alzheimer’s disease (AD) is known as the most common neurodegenerative disorder in aged people. The AD’s patients show progressive memory retardation and cognition disturbance. The pathology of this disease is neuronal loss in the cerebral cortex accompanied by massive accumulation of amyloid fibril forming senile plaque and hyperphosphorylated tua protein forming neurofibrillary tangle (NFT) [82]. The amyloid fibril is mainly composed of β-amyloid (Aβ) peptide, the 40 and 42 amino acid form (Aβ40 and Aβ42), which is derived from proteolytic cleavage from the amyloid precursor protein (APP) by β- and γ-secretase enzyme activity [83–85]. Accumulation of Aβ plaque, mainly Aβ42, in the brain parenchyma is the initiation of AD pathogenesis and it leads  to the formation of NFT which enhances  degeneration of neurons [84]. Presenilin 1(PS1) and presenilin 2 (PS2) genes encode the major component of γ-secretase which mutated in autosomal-dominant familial Alzheimer’s disease [86]. Mutation in the PS1, PS2, and APP genes is reported the most of familial early-onset cases of AD with high level of Aβ42 production and greater fibrillary amyloid deposits [86]. Recently, iPSCs from fibroblasts of FAD with the PS1 mutation A246E and the PS2 mutation N141I were established by retrovirus transduction with the five factors Oct4, SOX2, Klf4, LIN28, and NANOG [87]. All PS1 and PS2 iPSC clones demonstrated typical characteristics of pluripotent cell when compared with both normal 201B7 iPSC line [15] and the sporadic PD-derived iPSC line which was reprogrammed by the original methods [15]. Both PS1 and PS2 lines were induced to differentiate into neurons. Comparing with a normal control, they showed no difference of the efficiency to generate neurons; however, the ratio of Aβ42 to Aβ40 was significantly elevated in PS1 and PS2 iPSCs-derived neurons. Surprisingly, neither abnormal tau protein accumulation nor tangle formation was detected in FAD-derived neurons. This may result from the short culture period (2 weeks) for tauopathy formation. Not only produced the Aβ which is the pathological hallmark of AD, FAD-derived neurons also responded to γ-secretase inhibitor (compound E) and γ-secretase modulator (compound W) in order to decrease the ratio of Aβ42 to Aβ40. These data highlighted that both PS1 and PS2 iPSC-derived neurons respond to drug treatment as expected and could be useful for a novel drug screening for AD treatment [87]. Nevertheless, neural specific differentiation protocol and long-term culture methods of mature neurons are necessary to enhance dominant disease pathologies.


## 6. The Perspectives of Disease Modeling  by Human Induced Pluripotent Cells

One of the most interesting aspects of iPSC technology is the possibility to develop autologous cells for cell replacement therapy. The patient-specific pluripotent cells could be differentiated into desired cell types in the unlimited cell number manner which, ultimately, could be transplanted into the patient’s own body. However, techniques of reprogramming somatic cells are necessary to be nonviral, nononcogenic, and nongenetic modification. Moreover, diseases which are related to imprinting genes and epigenetic anomaly, such as FX [44], AS [65], and PWS [48, 65] are difficult to be completely reprogrammed and reset their epigenetic memory [32], which means iPSC technology needs further development in order to overcome these issues. Importantly, the differentiation protocols of desired cell types must be robust and efficient in order to produce high purified specific cell types. For these reasons, the use of iPSCs for cell replacement therapy is not yet ready for clinical applications at this moment [88].The other applications of iPSCs are the generation of pluripotent cells from developmental or degenerative disorder patients for disease modeling and drug discovery. According to the lack of ideal animal models and inaccessibility to biopsy brain samples from live patients, generation of human pluripotent stem cells has opened an opportunity to investigate disease developmentin vitro[31]. Ultimately, if iPSCs could be generated in individualized manner, the most effective drug for each patient could be validated [33, 89]. To date, there are 4 technical challenges if we want to use iPSCs as a disease model. Firstly, the transgene-free iPSCs should be produced in order to minimize or eliminate genetic alterations in the derived iPSC lines. It has been reported that the gene expression features of factor-free PD-iPSCs were closely similar to hESCs [36]. There are many other factor-free methods available for iPSC establishment, such as episomal vector [90, 91], synthetic-modified mRNAs [92], recombinant proteins [93, 94], or miRNA [95, 96]. Secondly, the solid differentiation protocols of iPSCs into disease-specific cell types must be robust and efficient [35, 87]. The production of specific cell type in a clinical scale is very difficult, resulting from a short time span of cells in culture conditions. Moreover, specific cell-sorting methods have to be developed for purifying only disease-related cell types for further investigation. Thirdly, the in vitro disease-relevant phenotypes must be formed. The most important feature for disease-modeling system is the appearance of disease phenotype; however, some of the neural cells derived from patient iPSCs do not show clinical disease phenotypes after the differentiation [36, 44, 69], in particular iPSCs derived from neurodegenerative diseases with long latency, such as Parkinson’s and Huntington diseases. The possibility to overcome this challenge would be the attempt to accelerate the appearance of pathological phenotypes by the exposure of disease stimulators effects, such as oxidative stressors, hydrogen peroxide, or MG-132 [35, 36, 87]. Lastly, the disease-relevant phenotypes could be generated by human-animal chimeras. Some diseases may not be practical to in vitro model since the pathological onset appears in elderly patients with complex pathophysiology. Chimeras provide long-term access to complex and changing environmental context for hiPSCs. Many types of late-onset diseases, such as Alzheimer’s and Parkinson’s diseases, are multifactorial disorders, caused by both genetic and environmental factors. These chimeric animals will provide the in vivo model for long-term modeling in various types of environmental factors which will provide the close systems to human diseases [97, 98], such as triple knockout of amyloid precursor protein (APP), APLP1, and APLP2 chimeric mice which show a mixed population of triple knockout APP neuron in WT back ground brain [99]. In conclusion, the iPSC technology is the powerful technique which allows scientists to investigate the neurological disease development and screen pharmaceutical compounds. Several diseases of the nervous system remain to develop disease-specific iPSCs. In the near future, iPSC technology will facilitate stem cell biologists and neuroscientists to unravel disease mechanisms and discover the new therapeutic approaches for neurological disorders.



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*Source: 350131-2011-11-24.xml*