# Unique Mutation in SP110 Resulting in Hepatic Veno-Occlusive Disease with Immunodeficiency

Authors: Osama Hamdoun; Asia Al Mulla; Shamma Al Zaabi; Hiba Shendi; Sharifa Al Ghamdi; Jozef Hertecant; Amar Al-Shibli
Journal: Case Reports in Pediatrics
 (2020)

---

## Abstract

Familial hepatic veno-occlusive disease with immunodeficiency (VODI, OMIM: 235550) is a rare form of combined immune deficiency (CID) that presents in the first few months of life with failure to thrive, recurrent infections, opportunistic infections along with liver impairment. Herein, we are describing a Pakistani patient with a homozygous novel variant in theSP110 gene, presenting with classical phenotypic manifestations of VODI. He presented at the age of 3 months with opportunistic infections and later developed liver failure. Conclusion. Hepatic veno-occlusive disease with immunodeficiency is a rare cause of immunodeficiency, and this is the first case report from the Middle East in a patient of Pakistani origin. It is important to have a high suspicion for this disease, in patients presenting early life with a picture of CID and deranged liver function, as the earlier the diagnosis and treatment, the better the prognosis.


---

## Body

## 1. Introduction

Familial veno-occlusive disease with immunodeficiency syndrome (VODI; Online Mendelian Inheritance in Man (OMIM) 235550) is an autosomal recessive immunodeficiency syndrome [1]. The key features of VODI include: (1) immunodeficiency (usually combined affecting the cellular and humoral function) and (2) liver involvement in the form of hepatomegaly with/without hepatic failure or histologically proved hepatic veno-occlusive disease (hVOD). Mutations in Sp110 gene leads to SP110 protein deficiency and the clinical manifestations of VODI [2].Patients with VODI usually show manifestations early in life with repeated bacterial, viral, and fungal infections. These infections are usually serious and may be life-threatening. Herein, we are describing a case with homozygous novel variant in theSP110 gene with classical phenotypic manifestations of VODI.


## 2. Case Presentation

This is a 3 month-old-male of Pakistani origin. He was delivered by normal vaginal delivery at term with an uncomplicated perinatal course. Parents are second degree relatives. He first presented initially to hospital at the age of 3 months with fever, oral thrush resistant to topical antifungal gels, and diarrhea.Laboratory workup showed significant panhypogammaglobulinaemia with derangement of liver function test. Lymphocyte subset analysis showed moderate T-cell lymphopenia mainly affecting the CD4 population but was otherwise unremarkable (Table1).Table 1
Investigations at 3 months of age.
Investigation at age of 2-3 months
Result
Reference range
IgM
<0.25 g/l
0.15–0.70 g/l
IgG
<2.0 g/l
2.1–7.7 g/l
IgA
<0.06 g/l
0.05–0.40 g/l
CD3
1.404 cells/Micro/L
3.5–5 cells/Micro/L
CD4
0.744 cells/Micro/L
2.8–3.9 cell/Micro/L
CD8
0.637 cells/Micro/L
0.637 cells/Micro/L
CD19
0.581 cells/Micro/L
0.581 cells/Micro/L
NK cells
0.037 cells/Micro/L
0.1–1.3 cell/Micro/L
CD4/CD8
1.168 cells/Micro/L
0.9–3.6 cell/Micro/L
CMV quantitative
166,250
<490 cp/ml
WBC
17.5 × 109
5–10 × 109
Hgb
12.5
11–13 g/l
Platelet
67 × 109
140–400 × 109
Hepatitis B s Ab
Negative
Hepatitis C Ab
Negative
Hepatitis A IgM
Negative
HIV
Negative
BAL
Negative
Karyotyping
46 + XY
Liver enzymes
Albumin
22 g/dl
AST
217
22–58 IU/l
ALT
96
11–39 IU/l
Total bilirubin
22
5–22 micromol/l
PT
19.7
Seconds
PTT
46.9
SecondsDuring his hospital stay, he suddenly developed acute respiratory failure, which required resuscitation and intubation. At that time, CXR showed bilateral ground glass appearance, which was suggestive of pneumocystis pneumonia (PCP) or cytomegalovirus (CMV) infection. CMV viral load was elevated of 39000; as a result, he was diagnosed with disseminated CMV infection and was treated with ganciclovir with excellent response; repeated CMV viral load after treatment is less than 5780 copies, which is undetectable. He had bronchoalveolar lavage which showed mixed upper respiratory flora. His lymphocyte subsets normalized with CD4 count of 1,800 cells Micro/L. In spite of normal lymphocyte subsets, the presence of disseminated CMV and panhypogammaglobulinaemia was highly suspicious of severe combined immunodeficiency (SCID). Unfortunately, lymphocyte proliferation studies were not available. The patient was therefore commenced on antimicrobial prophylaxis and immunoglobulin replacement therapy, and currently patient is not having any new infections.Moreover, the patient developed recurrent ascitic fluid accumulation, hypoalbuminemia, and further derangement of liver enzymes. Investigations ruled out protein losing enteropathy and nephropathy.Abdominal ultrasound showed slightly enlarged liver and moderate amount of ascites. Peritoneal fluid analysis was normal. Liver biopsy showed sinusoidal obstructive syndrome (veno-occlusive disease), portal and lobular eosinophils, and noncaseating granulomas. Currently, his liver disease is static, but it is expected to worsen overtime.Table1 shows the laboratory data of the patient at the time of the presentation.Whole exome sequencing (WES) was suggestive of the hepatic veno-occlusive disease with immunodeficiency as it confirmedSP110 (NM_080424.2) homozygous variant c.691 C > T p (Gln231∗). Null Mutation is expected to result in absent protein expression, and the disease is most likely from consanguineous parents Table 2.Table 2
Result of WES showing the defect of theSP110.
Gene
Variant coordinates
In silico parameters∗
Allele frequencies∗∗
Type and classification∗∗∗
SP110
Chr2(GRCh37):g.231076245G>A
PolyPhen: N/A
gnomAD :-
Stop gain
NM_080424.2:c.691C>T
Align-GVGD: N/A
ESP :-
Likely pathogenic
p.(Gln231∗)
SIFT: N/A
1000 G :-
(class 2)
Mutation taster: N/A
CentoMD :-
Conservation: nt weak
Variant description based on Alamut Batch 1.7 (latest database available).∗Align-GVD: C0: least likely to interfere with function; C65: most likely to interfere with function; splice prediction tools: SSF, MaxEnt, and HSF. ∗∗Exome Aggregation Consortium (ExAC) database, Exome Sequencing Project (ESP), 1000Genome project (1000G), and CentoMD 4.0. ∗∗∗Based on ACMG recommendations.


## 3. Discussion

VODI was described originally in Australians of Lebanese origin by Mellis and Bale in 1976 [3]. A majority of children reported with VODI have been of Lebanese origin with prevalence of one in 2,500 [1].There were other reports afterwards from different regions of the world with novel mutations from families of Italian, Hispanic, and Arabic ethnic origins [2, 4] (Figure 1).Figure 1
Pedigree of the family.The age of presentation is around 4 months (usually before 12 months) with respiratory distress, fever, failure to thrive and diarrhea, as well as disseminated CMV infection, rotavirus-related gastroenteritis, and respiratoryPneumocystis jiroveci. Our patient presented at the age of 3 months with recurrent oral thrush and failure to thrive. At 4 months, he developed disseminated CMV infection with hepatitis and pneumonitis. In a group of 16 patients with VODI, clinical hepatosplenomegaly was detected in 12 patients at presentation [3, 4]. Ninety percent of the children with VODI present with either hepatomegaly (83% with preceding infection) or hepatic failure (53% with preceding infection) [2].Neurological manifestations (occur in up to 30%) of cases are due to the veno-occlusive disease of the brain which may manifest as cerebral necrosis. Some of the patients described in the literature had cerebral leukodystrophy.Thrombocytopenia and syndrome of inappropriate antidiuretic hormone secretion also have been described [5].VODI is associated with 100% mortality in the first year of life if unrecognized and untreated with immunoglobulin replacement andPneumocystis jirovecii prophylaxis, and a 90% mortality overall by the midteenage years if not treated with bone marrow transplant [5].The immunodeficiency is characterized by severe hypogammaglobulinemia, clinical evidence of T-cell immunodeficiency with normal numbers of circulating T and B cells, absent lymph node germinal centres, and absent tissue plasma cells. Bacterial and opportunistic infections includingPneumocystis jirovecii infection, mucocutaneous candidiasis, and enterovirus or cytomegalovirus infections occur [1].VODI is inherited in an autosomal recessive manner. Carrier testing for at-risk relatives and prenatal diagnosis for pregnancies at increased risk are possible if both pathogenic variants in a family are known [5, 6].TheSP110 protein plays a crucial role in shaping the inflammatory milieu that supports host protection during infection by fine-tuning of NF-κB activity which is required for normal T and B cell responses. A range of mutations in SP110 causes decreased SP110 protein levels and clinical disease. [7, 8] Some of the acquired immune deficiencies have been associated with veno-occlusive disease as well [9].It is important to diagnose VODI in the first year of life as it is associated with 100% mortality if missed and untreated. There are reports of successful treatment of VODI with hematopoietic stem cell transplantation in few patients [10].


## 4. Conclusion

Hepatic veno-occlusive disease with immunodeficiency is a rare cause of immunodeficiency. To the best of our knowledge, this is the first report on a Pakistani patient with a novel homozygous mutation inSP110 (NM_080424.2) homozygous variant c.691 C > T p. (Gln231∗) [11]. The patient was presented with classical presentation of liver impairment with immune deficiency.



---

*Source: 3460631-2020-01-10.xml*