# Vibrational Spectroscopic Study of the Cocrystal Products Formed by Cinchona Alkaloids with 5-Nitrobarbituric Acid

Authors: Harry G. Brittain
Journal: Journal of Spectroscopy
 (2015)

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## Abstract

X-ray powder diffraction, differential scanning calorimetry, infrared absorption spectroscopy, and Raman spectroscopy have been used to study the phenomenon of cocrystal formation in the molecular complexes formed by 5-nitrobarbituric acid with four cinchona alkaloids. The cocrystal products were found to contain varying degrees of hydration, ranging from no hydration in the nitrobarbiturate-quinidine cocrystal up to a 4.5-hydrate species in the nitrobarbiturate-cinchonine cocrystal. For the nitrobarbiturate cocrystals with cinchonine, cinchonidine, and quinidine, the predominant interaction was with the quinoline ring system of the alkaloid. However, for quinine, the predominant interaction was with the quinuclidine group of the alkaloid. These properties serve to demonstrate the utility of 5-nitrobarbituric acid as a preferred reagent for chemical microscopy, since the differing range of hydrate and structural types would serve to easily differentiate the cinchona alkaloids from each other, even when different compounds contained the same absolute configurations at their dissymmetric centers.


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## Body

## 1.  Introduction

The realization that cocrystallization of drug substances with other compounds could lead to modification of physical properties has led to a vitalization of the crystal engineering community and to substantial interest in the part of the pharmaceutical industry [1–5]. Aakeröy and Salmon have summarized a useful framework to describe cocrystal formation, where such crystalline solids result from the assembly of supramolecular synthons constructed from discrete neutral compounds (that are solids at ambient temperatures) and where the cocrystal is a structurally homogeneous crystalline material that contains these synthons in definite stoichiometric amounts [6].However, the subject area of cocrystals extends much further back in time than the recent activity [7], with the properties of mixed systems being reported under the scope of a variety of definitions. Herbstein has categorized these as molecular compounds with localized or delocalized interactions and has provided an extensive review of donor-acceptor complexes, hydrogen-bonded molecular complexes, and π-molecular complexes [8]. Annual reviews summarizing advances in crystal engineering are available [9–11].Another source of unrecognized cocrystals is contained within the extensive scope of analytical chemistry conducted under the general category of chemical microscopy, where analysts would prepare derivatives or adducts of an analyte species and then identify the analyte on the basis of the morphology of the crystalline products [12, 13]. For example, Clarke developed sensitive microchemical tests for the determination of anesthetics [14], antihistamines [15], antimalarials [16], and analgesics [17], while Chatten and coworkers developed chemical microscopic methods for the identification and differentiation of local anesthetics [18], muscle relaxants [19], and amine-containing compounds [20].One of the premier chemical microscopic reagents was 5-nitrobarbituric acid (also known as dilituric acid), whose adduct complexes with basic compounds were superior to surpass other nitroenolic reagents owing to the high degree of crystallinity and ease of recrystallization of the products of [21]. Plein and Dewy developed the use of this compound as a reagent for the identification of aliphatic amines [22], primary aromatic amines [23], autonomic drugs [24], and secondary aromatic amines [25]. More recently, the underlying crystallographic properties associated with adducts of 5-nitrobarbituric acid and basic compounds that facilitated their utility in chemical microscopy have been evaluated through the study of the cocrystals formed by the diliturate reagent with primary achiral phenylalkylamines [26] and resolved and racemic phenylalkylamines and phenylalkylamino acids [27]. In these works, it was established that the different crystal morphologies associated with the various reaction products were derived from the ability of the systems to form a variety of polymorphic and solvatomorphic cocrystal structures.In the present work, the phenomenon of cocrystal formation in the molecular complexes of 5-nitrobarbituric acid has been further investigated through studies of adducts formed by this reagent with four cinchona alkaloids (quinine, quinidine, cinchonine, and cinchonidine). Structures of the 5-nitrobarbituric acid reagent and the alkaloids studies in this work are found in Figure1. Although chemical microscopic identification methods have been published for cinchona alkaloids [28–30], the only report on the 5-nitrobarbiturate adducts simply mentioned the crystal morphologies of the quinine and cinchonine adducts [21]. Since no detailed studies of the cinchona alkaloid cocrystals with 5-nitrobarbituric acid have been reported, the products were characterized by the standard thermoanalytical and powder diffraction methods. In addition, detailed vibrational spectroscopic studies were performed in order to determine which vibrational modes were most affected by the cocrystal formation and to determine the magnitudes of perturbation within the involved vibrational modes.Figure 1
Structures of 5-nitrobarbituric acid and the four cinchona alkaloids used in this study.


## 2. Materials and Methods

### 2.1. Reagents and Method of Cocrystal Preparation

5-Nitrobarbituric acid trihydrate, quinine dihydrate, quinidine, cinchonine, and cinchonidine were purchased from Sigma-Aldrich and were recrystallized from 70% aqueous isopropanol before use. The products studied in this work were prepared using solvent-drop-mediated solid-state grinding [31–33], where the stoichiometry of the product was determined by the amounts of reactants initially taken. Exactly weighed amounts of 5-nitrobarbituric acid and alkaloid acid were weighed directly in an agate mortar (preparing approximately 500 mg of total product) and wetted with 50 μL of 70% aqueous isopropanol. After slurry was prepared by mixing, the composition was hand-ground with an agate pestle until the product was completely dry.


### 2.2. X-Ray Powder Diffraction

X-ray powder diffraction (XRPD) patterns were obtained using a Rigaku MiniFlex powder diffraction system, equipped with a horizontal goniometer operating in theθ/2θ mode. The X-ray source was nickel-filtered Kα emission of copper (1.54184 Å). Samples were packed into the sample holder using a back-fill procedure and were scanned over the range of 3.5 to 40 degrees 2θ at a scan rate of 0.5 degrees 2θ/min. Using a data acquisition rate of 1 point per second, the scanning parameters equate to a step size of 0.0084 degrees 2θ. Calibration of the diffractometer system was effected using purified talc as a reference material.


### 2.3. Thermal Analysis

Measurements of differential scanning calorimetry (DSC) were obtained on a TA Instruments 2910 thermal analysis system. Samples of approximately 1-2 mg were accurately weighed into an aluminum DSC pan and then covered with an aluminum lid that was crimped in place. The samples were then heated over the range of 20–175°C, at a heating rate of 10°C/min.Measurements of total volatile content were made using an Ohaus model MB45 system. The samples were heated isothermally at a temperature of 125°C for a period of 15 minutes. Invariably, samples had desolvated to constant weight after approximately 10 minutes of heating time.


### 2.4. Infrared Absorption Spectroscopy

Infrared absorption spectra were obtained at a resolution of 4 cm−1 using a Shimadzu model 8400S Fourier-transform infrared spectrometer, with each spectrum being obtained as the average of 25 individual spectra. The data were acquired using the attenuated total reflectance sampling mode, where the samples were clamped against the ZnSe crystal of a Pike MIRacle single reflection horizontal ATR sampling accessory.


### 2.5. Raman Spectroscopy

Raman spectra were obtained in the fingerprint region using a Raman Systems model R-3000HR spectrometer, operated at a resolution of 5 cm−1 and using a laser wavelength of 785 nm. The data were acquired using front-face scattering from a thick powder bed kept in an aluminum sample holder.


## 2.1. Reagents and Method of Cocrystal Preparation

5-Nitrobarbituric acid trihydrate, quinine dihydrate, quinidine, cinchonine, and cinchonidine were purchased from Sigma-Aldrich and were recrystallized from 70% aqueous isopropanol before use. The products studied in this work were prepared using solvent-drop-mediated solid-state grinding [31–33], where the stoichiometry of the product was determined by the amounts of reactants initially taken. Exactly weighed amounts of 5-nitrobarbituric acid and alkaloid acid were weighed directly in an agate mortar (preparing approximately 500 mg of total product) and wetted with 50 μL of 70% aqueous isopropanol. After slurry was prepared by mixing, the composition was hand-ground with an agate pestle until the product was completely dry.


## 2.2. X-Ray Powder Diffraction

X-ray powder diffraction (XRPD) patterns were obtained using a Rigaku MiniFlex powder diffraction system, equipped with a horizontal goniometer operating in theθ/2θ mode. The X-ray source was nickel-filtered Kα emission of copper (1.54184 Å). Samples were packed into the sample holder using a back-fill procedure and were scanned over the range of 3.5 to 40 degrees 2θ at a scan rate of 0.5 degrees 2θ/min. Using a data acquisition rate of 1 point per second, the scanning parameters equate to a step size of 0.0084 degrees 2θ. Calibration of the diffractometer system was effected using purified talc as a reference material.


## 2.3. Thermal Analysis

Measurements of differential scanning calorimetry (DSC) were obtained on a TA Instruments 2910 thermal analysis system. Samples of approximately 1-2 mg were accurately weighed into an aluminum DSC pan and then covered with an aluminum lid that was crimped in place. The samples were then heated over the range of 20–175°C, at a heating rate of 10°C/min.Measurements of total volatile content were made using an Ohaus model MB45 system. The samples were heated isothermally at a temperature of 125°C for a period of 15 minutes. Invariably, samples had desolvated to constant weight after approximately 10 minutes of heating time.


## 2.4. Infrared Absorption Spectroscopy

Infrared absorption spectra were obtained at a resolution of 4 cm−1 using a Shimadzu model 8400S Fourier-transform infrared spectrometer, with each spectrum being obtained as the average of 25 individual spectra. The data were acquired using the attenuated total reflectance sampling mode, where the samples were clamped against the ZnSe crystal of a Pike MIRacle single reflection horizontal ATR sampling accessory.


## 2.5. Raman Spectroscopy

Raman spectra were obtained in the fingerprint region using a Raman Systems model R-3000HR spectrometer, operated at a resolution of 5 cm−1 and using a laser wavelength of 785 nm. The data were acquired using front-face scattering from a thick powder bed kept in an aluminum sample holder.


## 3. Results and Discussion

### 3.1. Stereochemistry of the Cinchona Alkaloids

Examination of Figure1 reveals the structural similarity of the cinchona alkaloids studied in the present work. The configurations of the compounds were once a matter of dispute, but a detailed study of the oxirane derivatives served to establish that all of the naturally occurring cinchona alkaloids are of the erythroconfiguration [34]. The members of this series each contain a quinoline ring attached through a hydroxymethylene group to a quinuclidine ring. As illustrated in the figure, cinchonine and cinchonidine represent a diastereomeric pair, but the important diastereomeric phenomena related to these compounds have been correlated with the absolute configuration at carbon-9 [35]. A more systematic name for cinchonine is (9S)-cinchonan-9-ol, and the more systematic name for cinchonidine is (9R)-cinchonan-9-ol. The absolute configurations of all centers of dissymmetry are known [36].Quinine and quinidine are also a diastereomeric pair and differ from cinchonine and cinchonidine by the presence of a methoxy group attached to the quinoline ring. The more systematic name for quinidine is (9S)-6′-methyoxycinchonan-9-ol, while the more systematic name for quinine is (9R)-6′-methyoxycinchonan-9-ol. The absolute configuration of quinidine has been confirmed from a single-crystal study of one of its salts, with the absolute stereochemistry being determined by the Bijvoet anomalous-dispersion method [37]. As indicated in Figure 1, the dissymmetric centers of cinchonine and quinidine are the same, while the dissymmetric centers of cinchonidine and quinine are the same.


### 3.2. Vibrational Spectroscopy of 5-Nitrobarbituric Acid

Although the vibrational spectra of a large number of substituted barbituric acids have been reported and analyzed [38], the infrared absorption and Raman spectra of the 5-nitro derivative seem to have escaped attention. Fortunately, when one takes into account the inductive effect of the 5-nitro group on the assignments previously published for the energies of the vibrational modes of other barbiturate derivatives [39–42] and with the body of group frequency knowledge [43–50], one may deduce assignments for the absorption bands that will be important in the discussions. It may be noted that the broad but intense character of associated with the high-frequency vibrational modes (i.e., 2500–3800 cm−1) greatly weakened the utility of this spectral region for evaluation of intermolecular interactions.It is known that the vibrational motions of the three carbonyl groups on the barbituric acid moiety are observed as transitions into three-group frequency ring modes, and the atomic numbering shown in Figure2 will be useful.Figure 2The highest frequency band (observed at an energy of 1705 cm−1 in the infrared absorption spectrum of 5-nitrobarbituric acid) is identified as the 4,6-CO symmetric mode, where the vibrational motion is more localized on the carbonyl groups located at carbons 4 and 6. The lowest frequency mode corresponds to the 2-CO stretching mode and is observed at an energy of 1614 cm−1, while the 4,6-CO antisymmetric mode is observed at an intermediate energy of 1651 cm−1. Other important absorption bands in the infrared absorption spectrum of 5-nitrobarbituric acid are the symmetric stretching mode associated with the nitro group (1381 cm−1), the C–N ring deformation mode (1246 cm−1), and the carbonyl out-of-plane bending mode (779 cm−1).A number of important bands were observed in the Raman spectrum of 5-nitrobarbituric acid, with these being primarily associated with motions of the carbonyl groups. An in-plane bending mode was observed at an energy of 379 cm−1, while out-of-plane bending modes were observed at 625 and 695 cm−1. Other band assignments that will be important to succeeding discussion are an N–H out-of-plane bending mode (846 cm−1), a C–N stretching mode (1150 cm−1), and a C–N deformation mode (1255 cm−1).


### 3.3. Vibrational Spectroscopy of the Cinchona Alkaloids

While the vibrational modes of 5-nitrobarbituric acid are dominated by ring character, the vibrational modes of the cinchona alkaloids consist mainly of ring modes associated with the quinoline ring and C–C and C–H vibrational modes associated with the vinylquinuclidine group and the aliphatic linkage between the two. Since the vibrational spectroscopy of both quinoline [51, 52] and quinuclidine [53, 54] is well understood, the major transitions observed in the infrared absorption spectra and the Raman spectra of the cinchona alkaloids can be understood, especially when one considers studies that have been conducted on cinchonine [55], cinchonidine [56], and quinine [57]. Owing to the delocalized nature of the vibrational modes in these molecules, it is difficult to separate out individual modes that are localized on one of the important functional groups. However, the consensus opinion is that a nonprotonated quinuclidine will exhibit a vibrational mode in the range of approximately 1355–1365 cm−1 that shifts to a range of approximately 1380–1390 cm−1 upon protonation. A nonprotonated quinoline will exhibit a characteristic transition in the range of approximately 1570–1580 cm−1 which will shift to approximately 1600–1610 cm−1 upon protonation.Unfortunately, were the protonated cinchona bands to be present in the absorption spectrum of a cocrystal product, they would be overwhelmed by the more intense absorption bands associated with the 5-nitrobarbituric acid. Fortunately, the Raman spectrum of the cinchona alkaloids is not so compromised, and one may readily assess the interactions existing in the cocrystal by tracking the energies of the key quinoline and quinuclidine vibrational modes.


### 3.4. The 1 : 1 Cinchonine Cocrystal Formed with 5-Nitrobarbituric Acid

XRPD patterns obtained for 5-nitrobarbituric acid, cinchonine, and the nitrobarbiturate-cinchonine cocrystal product are shown in Figure3. The differences between the diffraction patterns demonstrated that the three crystal structures are different and established the formation of a crystalline cocrystal product.Figure 3
X-ray powder diffraction patterns of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.The nitrobarbiturate-cinchonine cocrystal product was found to evolve 14.8% of its mass when heated isothermally at 125°C, which would correspond to the existence of a 4.5-hydrate form of the cocrystal. The DSC thermogram of the cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 80°C and an enthalpy of fusion equal to 246 J/g. The desolvated compound formed upon completion of this thermal reaction did not exhibit a melting endothermic transition, indicating that an amorphous substance formed upon desolvation. The only other thermally induced transition observed in the DSC thermogram was the onset of decomposition, which began at a temperature of approximately 220°C.The infrared absorption spectra obtained for 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal within the fingerprint region are shown in Figure4, and the correlation between the energies of the important absorption bands is shown in Table 1. All of the strong 5-nitrobarbiturate absorption bands were visible in the spectrum of the cocrystal, and most of these were found to be considerably shifted in energy relative to the free acid. This finding demonstrates that the entire ring system of the acid is involved in the cocrystal formation. Unfortunately, the two key absorption bands of the quinuclidine and quinoline moieties of cinchonine were obscured by the nitrobarbiturate absorption bands and thus could not be used in an interpretative analysis.Table 1
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, cinchonine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
756
C–N ring deformation mode
1246
1286
Obscured and not observed
1360
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1377
Obscured and not observed
1566
Nonprotonated quinoline mode
2-CO stretching mode
1614
1622
4,6-CO antisymmetric mode
1651
Not observed
4,6-CO symmetric mode
1705
1701Figure 4
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.The Raman spectra obtained for 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal within the fingerprint region are shown in Figure5, and the correlation between the energies of the important absorption bands is shown in Table 2. Once again, all of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, providing a further demonstration that the entire ring system of the acid is involved in the cocrystal formation. More importantly, the key Raman bands associated with cinchonine were visible in the spectrum of the cocrystal. The energy of the quinuclidine mode was not found to shift in the spectrum of the cocrystal, indicating that the degree of interaction with 5-nitrobarbituric acid at the tertiary nitrogen was minimal. The vibrational mode of the quinoline moiety did undergo a significant increase in energy, indicating that the predominant interaction with the acid took place at this group.Table 2
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, cinchonine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
357
Carbonyl out-of-plane bending mode
625
609
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
838
C–N stretching mode
1150
1137
C–N deformation mode
1255
1248
1361
1360
Nonprotonated quinuclidine mode
1572
1566
Nonprotonated quinoline modeFigure 5
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.


### 3.5. The 1 : 1 Cinchonidine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, cinchonidine, and the nitrobarbiturate-cinchonidine cocrystal product are shown in Figure6. The fact that the powder pattern of the 1 : 1 stoichiometric reaction product cannot be obtained by a simple averaging of the XRPD patterns of the two reactants establishes the formation of a crystalline cocrystal product.Figure 6
X-ray powder diffraction patterns of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.The nitrobarbiturate-cinchonidine cocrystal product was found to evolve 5.5% of its mass when heated isothermally at 125°C, which would correspond to the existence of a 1.5-hydrate form of the cocrystal. The DSC thermogram of the cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 101°C and an enthalpy of fusion equal to 97 J/g. The desolvated compound formed upon completion of this thermal reaction was found to exhibit a melting endothermic transition having a temperature maximum of 219°C, but as this transition was coupled with an exothermic decomposition reaction no estimation of enthalpy could be made.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, cinchonidine, and the cocrystal product are shown in Figure7, and the correlation between the energies of the important absorption bands is shown in Table 3. As had been noted for the 5-nitrobarbituric acid cocrystal with cinchonine, all of the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were found to be shifted in energy relative to the free acid. As before, the two key absorption bands of the quinuclidine and quinoline moieties of cinchonidine were obscured by the nitrobarbiturate absorption bands and were not available for analysis.Table 3
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, cinchonidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonidine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
762
C–N ring deformation mode
1246
1256
Obscured and not observed
1352
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1358
Obscured and not observed
1568
Nonprotonated quinoline mode
2-CO stretching mode
1614
1595
4,6-CO antisymmetric mode
1651
1666
4,6-CO symmetric mode
1705
1691Figure 7
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal are shown in Figure8, and the correlation between the energies of the important absorption bands is shown in Table 4. All of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, providing a further demonstration that the entire ring system of the acid is involved in the cocrystal formation. The energy of the quinuclidine mode was barely shifted in the spectrum of the cocrystal, while the vibrational mode of the quinoline moiety was noted to undergo a significant increase in energy. These findings indicate that the predominant interaction with 5-nitrobarbituric acid took place at the quinoline group and that the degree of interaction with the tertiary nitrogen of the quinuclidine group was minimal.Table 4
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, cinchonidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonidine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
373
Carbonyl out-of-plane bending mode
625
617
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
843
C–N stretching mode
1150
1132
C–N deformation mode
1255
1252
1358
1359
Nonprotonated quinuclidine mode
1591
1564
Nonprotonated quinoline modeFigure 8
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.


### 3.6. The 1 : 1 Quinine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, quinine, and the nitrobarbiturate-quinine cocrystal product are shown in Figure9. In this system, formation of the 1 : 1 stoichiometric reaction product is very evident in the nonequivalence of the powder patterns, especially when the quinine-free base used to form the cocrystal could only be obtained in a quasicrystalline form regardless of its initial processing. It is interesting to note that even though the absolute configurations at the dissymmetric carbons of quinine and cinchonidine are the same, the XRPD patterns of their cocrystal products with 5-nitrobarbituric are only qualitatively similar and each exhibits peaks not contained in the pattern of the other.Figure 9
X-ray powder diffraction patterns of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.However, like the nitrobarbiturate-cinchonidine cocrystal, the nitrobarbiturate-quinine cocrystal product was also found to be a 1.5-hydrate form, since it evolved 5.2% of its mass when heated isothermally at 125°C. The DSC thermogram of the nitrobarbiturate-quinine cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 98°C and an enthalpy of fusion equal to 74 J/g. The thermal characteristics of this desolvation endotherm are fairly similar to those of the nitrobarbiturate-cinchonidine cocrystal. Also akin to its stereochemical equivalent, the desolvated nitrobarbiturate-quinine cocrystal formed after completion of the desolvation thermal reaction exhibited a melting endothermic transition (temperature maximum of 217°C) that was accompanied by a strong exothermic decomposition reaction.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, quinine, and the cocrystal product are shown in Figures10 and 11, and the correlation between the energies of the important absorption bands is shown in Table 5. While the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were shifted in energy relative to the free acid, the pattern of shifting was somewhat different for the quinine cocrystal. For example, the energy of the carbonyl out-of-plane bending mode increased upon formation of the cocrystal, whereas in the two preceding systems the energy of this vibrational mode decreased.Table 5
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, quinine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
791
C–N ring deformation mode
1246
1234
1364
1371
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1359
1575
1576
Nonprotonated quinoline mode
2-CO stretching mode
1614
1620
4,6-CO antisymmetric mode
1651
1661
4,6-CO symmetric mode
1705
1691Figure 10
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.Figure 11
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.Even more interesting was the behavior of the two key absorption bands of the quinuclidine and quinoline moieties of quinine. While these were obscured by the nitrobarbiturate absorption bands in the infrared absorption spectra of the cinchonine and cinchonidine cocrystal products, they were observed in the spectrum of the quinine cocrystal. However, the energy of the nonprotonated quinoline vibrational mode was only barely shifted in the spectrum of the cocrystal (1576 cm−1 for quinine versus 1575 cm−1 for its cocrystal), while the energy of the nonprotonated quinuclidine vibrational mode was definitely shifted (1371 cm−1 for quinine versus 1364 cm−1 for its cocrystal). This finding would imply that while the dominant interaction between 5-nitrobarbituric acid and cinchonine or cinchonidine was between the acid and the quinoline ring, the dominant interaction between 5-nitrobarbituric acid and quinine was between the acid and the quinuclidine ring nitrogen.Quinine also contains a methoxy group bound on the quinoline ring that is not present for either cinchonine or cinchonidine. In the spectrum of the free base, the vibrational bands associated with the methoxy group were observed as a strong doublet of peaks (having energies of 1227 and 1240 cm−1) that each underwent significant shifting in the spectrum of the cocrystal (1234 and 1252 cm−1). This observation indicates that while the quinoline ring nitrogen was not strongly involved in the intermolecular interactions of the synthon, its methoxy group certainly was.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal are shown in Figure10, and the correlation between the energies of the important absorption bands is shown in Table 6. The strong 5-nitrobarbiturate vibrational modes were found to undergo shifts in energy relative to the free acid, as would be expected since the entire ring system of the 5-nitrobarbituric acid is involved in the cocrystal formation. As had been noted in the infrared absorption spectra, the energy of the nonprotonated quinuclidine mode was significantly shifted in the spectrum of the cocrystal, while the vibrational mode of the nonprotonated quinoline group barely underwent any change in energy. These findings provide further support that the predominant interaction with 5-nitrobarbituric acid took place at the quinuclidine group.Table 6
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, quinine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
368
Carbonyl out-of-plane bending mode
625
610
Carbonyl out-of-plane bending mode
695
679
N–H out-of-plane bending mode
846
834
C–N stretching mode
1150
1125
C–N deformation mode
1255
1242
1359
1366
Nonprotonated quinuclidine mode
1586
1585
Nonprotonated quinoline mode


### 3.7. The 1 : 1 Quinidine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, quinidine, and the nitrobarbiturate-quinidine cocrystal product are shown in Figure12, where it may be noted that the degree of crystallinity associated with the cocrystal was substantially less than that of the reactants. Nevertheless, the unique diffraction pattern obtained for the 1 : 1 stoichiometric reaction pattern relative to those of the reactants establishes the existence of a genuine cocrystal.Figure 12
X-ray powder diffraction patterns of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.The nitrobarbiturate-quinidine cocrystal product proved to be unique in that it barely evolved 0.25% of its mass when heated isothermally at 125°C and was therefore determined to be a nonsolvated solid-state form. This type of cocrystal product is totally different from that of its stereochemical analogue, as the nitrobarbiturate-cinchonine cocrystal product was characterized by the highest degree of hydration among the cocrystals studied. The DSC thermogram of the nitrobarbiturate-quinidine cocrystal product did not contain a desolvation endotherm and instead consisted of a weak melting endothermic transition having a temperature maximum of 196°C and an enthalpy of fusion equal to 15 J/g. At a temperature of 230°C the cocrystal was found to undergo a strong exothermic decomposition reaction.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, quinidine, and the cocrystal product are shown in Figure13, and the correlation between the energies of the important absorption bands is shown in Table 7. The trends in vibrational energies of the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were found to be consistent with those of the cocrystals with cinchonine and cinchonidine, and the two key absorption bands of the quinuclidine and quinoline moieties of quinidine were obscured by the nitrobarbiturate absorption bands.Table 7
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, quinidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinidine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
756
C–N ring deformation mode
1246
1240
Obscured and not observed
1360
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1362
Obscured and not observed
1562
Nonprotonated quinoline mode
2-CO stretching mode
1614
1622
4,6-CO antisymmetric mode
1651
Not observed
4,6-CO symmetric mode
1705
1690Figure 13
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal are shown in Figure14, and the correlation between the energies of the important absorption bands is shown in Table 8. All of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, confirming as before that the entire ring system of the acid is involved in the cocrystal formation. The energy of the nonprotonated quinuclidine mode (1363 cm−1) was barely shifted in the spectrum of the cocrystal (1362 cm−1), while the vibrational mode of the quinoline moiety was noted to undergo a significant increase in energy from 1561 cm−1 to 1570 cm−1. These findings indicate that, in this cocrystal system, the predominant interaction with 5-nitrobarbituric acid took place at the quinoline group and that the degree of interaction with the tertiary nitrogen of the quinuclidine group was minimal.Table 8
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, quinidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinidine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
365
Carbonyl out-of-plane bending mode
625
608
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
836
C–N stretching mode
1150
1144
C–N deformation mode
1255
1243
1362
1363
Nonprotonated quinuclidine mode
1570
1561
Nonprotonated quinoline modeFigure 14
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.


## 3.1. Stereochemistry of the Cinchona Alkaloids

Examination of Figure1 reveals the structural similarity of the cinchona alkaloids studied in the present work. The configurations of the compounds were once a matter of dispute, but a detailed study of the oxirane derivatives served to establish that all of the naturally occurring cinchona alkaloids are of the erythroconfiguration [34]. The members of this series each contain a quinoline ring attached through a hydroxymethylene group to a quinuclidine ring. As illustrated in the figure, cinchonine and cinchonidine represent a diastereomeric pair, but the important diastereomeric phenomena related to these compounds have been correlated with the absolute configuration at carbon-9 [35]. A more systematic name for cinchonine is (9S)-cinchonan-9-ol, and the more systematic name for cinchonidine is (9R)-cinchonan-9-ol. The absolute configurations of all centers of dissymmetry are known [36].Quinine and quinidine are also a diastereomeric pair and differ from cinchonine and cinchonidine by the presence of a methoxy group attached to the quinoline ring. The more systematic name for quinidine is (9S)-6′-methyoxycinchonan-9-ol, while the more systematic name for quinine is (9R)-6′-methyoxycinchonan-9-ol. The absolute configuration of quinidine has been confirmed from a single-crystal study of one of its salts, with the absolute stereochemistry being determined by the Bijvoet anomalous-dispersion method [37]. As indicated in Figure 1, the dissymmetric centers of cinchonine and quinidine are the same, while the dissymmetric centers of cinchonidine and quinine are the same.


## 3.2. Vibrational Spectroscopy of 5-Nitrobarbituric Acid

Although the vibrational spectra of a large number of substituted barbituric acids have been reported and analyzed [38], the infrared absorption and Raman spectra of the 5-nitro derivative seem to have escaped attention. Fortunately, when one takes into account the inductive effect of the 5-nitro group on the assignments previously published for the energies of the vibrational modes of other barbiturate derivatives [39–42] and with the body of group frequency knowledge [43–50], one may deduce assignments for the absorption bands that will be important in the discussions. It may be noted that the broad but intense character of associated with the high-frequency vibrational modes (i.e., 2500–3800 cm−1) greatly weakened the utility of this spectral region for evaluation of intermolecular interactions.It is known that the vibrational motions of the three carbonyl groups on the barbituric acid moiety are observed as transitions into three-group frequency ring modes, and the atomic numbering shown in Figure2 will be useful.Figure 2The highest frequency band (observed at an energy of 1705 cm−1 in the infrared absorption spectrum of 5-nitrobarbituric acid) is identified as the 4,6-CO symmetric mode, where the vibrational motion is more localized on the carbonyl groups located at carbons 4 and 6. The lowest frequency mode corresponds to the 2-CO stretching mode and is observed at an energy of 1614 cm−1, while the 4,6-CO antisymmetric mode is observed at an intermediate energy of 1651 cm−1. Other important absorption bands in the infrared absorption spectrum of 5-nitrobarbituric acid are the symmetric stretching mode associated with the nitro group (1381 cm−1), the C–N ring deformation mode (1246 cm−1), and the carbonyl out-of-plane bending mode (779 cm−1).A number of important bands were observed in the Raman spectrum of 5-nitrobarbituric acid, with these being primarily associated with motions of the carbonyl groups. An in-plane bending mode was observed at an energy of 379 cm−1, while out-of-plane bending modes were observed at 625 and 695 cm−1. Other band assignments that will be important to succeeding discussion are an N–H out-of-plane bending mode (846 cm−1), a C–N stretching mode (1150 cm−1), and a C–N deformation mode (1255 cm−1).


## 3.3. Vibrational Spectroscopy of the Cinchona Alkaloids

While the vibrational modes of 5-nitrobarbituric acid are dominated by ring character, the vibrational modes of the cinchona alkaloids consist mainly of ring modes associated with the quinoline ring and C–C and C–H vibrational modes associated with the vinylquinuclidine group and the aliphatic linkage between the two. Since the vibrational spectroscopy of both quinoline [51, 52] and quinuclidine [53, 54] is well understood, the major transitions observed in the infrared absorption spectra and the Raman spectra of the cinchona alkaloids can be understood, especially when one considers studies that have been conducted on cinchonine [55], cinchonidine [56], and quinine [57]. Owing to the delocalized nature of the vibrational modes in these molecules, it is difficult to separate out individual modes that are localized on one of the important functional groups. However, the consensus opinion is that a nonprotonated quinuclidine will exhibit a vibrational mode in the range of approximately 1355–1365 cm−1 that shifts to a range of approximately 1380–1390 cm−1 upon protonation. A nonprotonated quinoline will exhibit a characteristic transition in the range of approximately 1570–1580 cm−1 which will shift to approximately 1600–1610 cm−1 upon protonation.Unfortunately, were the protonated cinchona bands to be present in the absorption spectrum of a cocrystal product, they would be overwhelmed by the more intense absorption bands associated with the 5-nitrobarbituric acid. Fortunately, the Raman spectrum of the cinchona alkaloids is not so compromised, and one may readily assess the interactions existing in the cocrystal by tracking the energies of the key quinoline and quinuclidine vibrational modes.


## 3.4. The 1 : 1 Cinchonine Cocrystal Formed with 5-Nitrobarbituric Acid

XRPD patterns obtained for 5-nitrobarbituric acid, cinchonine, and the nitrobarbiturate-cinchonine cocrystal product are shown in Figure3. The differences between the diffraction patterns demonstrated that the three crystal structures are different and established the formation of a crystalline cocrystal product.Figure 3
X-ray powder diffraction patterns of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.The nitrobarbiturate-cinchonine cocrystal product was found to evolve 14.8% of its mass when heated isothermally at 125°C, which would correspond to the existence of a 4.5-hydrate form of the cocrystal. The DSC thermogram of the cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 80°C and an enthalpy of fusion equal to 246 J/g. The desolvated compound formed upon completion of this thermal reaction did not exhibit a melting endothermic transition, indicating that an amorphous substance formed upon desolvation. The only other thermally induced transition observed in the DSC thermogram was the onset of decomposition, which began at a temperature of approximately 220°C.The infrared absorption spectra obtained for 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal within the fingerprint region are shown in Figure4, and the correlation between the energies of the important absorption bands is shown in Table 1. All of the strong 5-nitrobarbiturate absorption bands were visible in the spectrum of the cocrystal, and most of these were found to be considerably shifted in energy relative to the free acid. This finding demonstrates that the entire ring system of the acid is involved in the cocrystal formation. Unfortunately, the two key absorption bands of the quinuclidine and quinoline moieties of cinchonine were obscured by the nitrobarbiturate absorption bands and thus could not be used in an interpretative analysis.Table 1
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, cinchonine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
756
C–N ring deformation mode
1246
1286
Obscured and not observed
1360
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1377
Obscured and not observed
1566
Nonprotonated quinoline mode
2-CO stretching mode
1614
1622
4,6-CO antisymmetric mode
1651
Not observed
4,6-CO symmetric mode
1705
1701Figure 4
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.The Raman spectra obtained for 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal within the fingerprint region are shown in Figure5, and the correlation between the energies of the important absorption bands is shown in Table 2. Once again, all of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, providing a further demonstration that the entire ring system of the acid is involved in the cocrystal formation. More importantly, the key Raman bands associated with cinchonine were visible in the spectrum of the cocrystal. The energy of the quinuclidine mode was not found to shift in the spectrum of the cocrystal, indicating that the degree of interaction with 5-nitrobarbituric acid at the tertiary nitrogen was minimal. The vibrational mode of the quinoline moiety did undergo a significant increase in energy, indicating that the predominant interaction with the acid took place at this group.Table 2
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, cinchonine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
357
Carbonyl out-of-plane bending mode
625
609
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
838
C–N stretching mode
1150
1137
C–N deformation mode
1255
1248
1361
1360
Nonprotonated quinuclidine mode
1572
1566
Nonprotonated quinoline modeFigure 5
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonine, and the 1 : 1 nitrobarbituric-cinchonine cocrystal.


## 3.5. The 1 : 1 Cinchonidine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, cinchonidine, and the nitrobarbiturate-cinchonidine cocrystal product are shown in Figure6. The fact that the powder pattern of the 1 : 1 stoichiometric reaction product cannot be obtained by a simple averaging of the XRPD patterns of the two reactants establishes the formation of a crystalline cocrystal product.Figure 6
X-ray powder diffraction patterns of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.The nitrobarbiturate-cinchonidine cocrystal product was found to evolve 5.5% of its mass when heated isothermally at 125°C, which would correspond to the existence of a 1.5-hydrate form of the cocrystal. The DSC thermogram of the cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 101°C and an enthalpy of fusion equal to 97 J/g. The desolvated compound formed upon completion of this thermal reaction was found to exhibit a melting endothermic transition having a temperature maximum of 219°C, but as this transition was coupled with an exothermic decomposition reaction no estimation of enthalpy could be made.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, cinchonidine, and the cocrystal product are shown in Figure7, and the correlation between the energies of the important absorption bands is shown in Table 3. As had been noted for the 5-nitrobarbituric acid cocrystal with cinchonine, all of the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were found to be shifted in energy relative to the free acid. As before, the two key absorption bands of the quinuclidine and quinoline moieties of cinchonidine were obscured by the nitrobarbiturate absorption bands and were not available for analysis.Table 3
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, cinchonidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonidine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
762
C–N ring deformation mode
1246
1256
Obscured and not observed
1352
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1358
Obscured and not observed
1568
Nonprotonated quinoline mode
2-CO stretching mode
1614
1595
4,6-CO antisymmetric mode
1651
1666
4,6-CO symmetric mode
1705
1691Figure 7
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal are shown in Figure8, and the correlation between the energies of the important absorption bands is shown in Table 4. All of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, providing a further demonstration that the entire ring system of the acid is involved in the cocrystal formation. The energy of the quinuclidine mode was barely shifted in the spectrum of the cocrystal, while the vibrational mode of the quinoline moiety was noted to undergo a significant increase in energy. These findings indicate that the predominant interaction with 5-nitrobarbituric acid took place at the quinoline group and that the degree of interaction with the tertiary nitrogen of the quinuclidine group was minimal.Table 4
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, cinchonidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Cinchonidine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
373
Carbonyl out-of-plane bending mode
625
617
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
843
C–N stretching mode
1150
1132
C–N deformation mode
1255
1252
1358
1359
Nonprotonated quinuclidine mode
1591
1564
Nonprotonated quinoline modeFigure 8
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, cinchonidine, and the 1 : 1 nitrobarbituric-cinchonidine cocrystal.


## 3.6. The 1 : 1 Quinine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, quinine, and the nitrobarbiturate-quinine cocrystal product are shown in Figure9. In this system, formation of the 1 : 1 stoichiometric reaction product is very evident in the nonequivalence of the powder patterns, especially when the quinine-free base used to form the cocrystal could only be obtained in a quasicrystalline form regardless of its initial processing. It is interesting to note that even though the absolute configurations at the dissymmetric carbons of quinine and cinchonidine are the same, the XRPD patterns of their cocrystal products with 5-nitrobarbituric are only qualitatively similar and each exhibits peaks not contained in the pattern of the other.Figure 9
X-ray powder diffraction patterns of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.However, like the nitrobarbiturate-cinchonidine cocrystal, the nitrobarbiturate-quinine cocrystal product was also found to be a 1.5-hydrate form, since it evolved 5.2% of its mass when heated isothermally at 125°C. The DSC thermogram of the nitrobarbiturate-quinine cocrystal product consisted of a strong desolvation endothermic transition, characterized by a temperature maximum of 98°C and an enthalpy of fusion equal to 74 J/g. The thermal characteristics of this desolvation endotherm are fairly similar to those of the nitrobarbiturate-cinchonidine cocrystal. Also akin to its stereochemical equivalent, the desolvated nitrobarbiturate-quinine cocrystal formed after completion of the desolvation thermal reaction exhibited a melting endothermic transition (temperature maximum of 217°C) that was accompanied by a strong exothermic decomposition reaction.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, quinine, and the cocrystal product are shown in Figures10 and 11, and the correlation between the energies of the important absorption bands is shown in Table 5. While the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were shifted in energy relative to the free acid, the pattern of shifting was somewhat different for the quinine cocrystal. For example, the energy of the carbonyl out-of-plane bending mode increased upon formation of the cocrystal, whereas in the two preceding systems the energy of this vibrational mode decreased.Table 5
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, quinine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
791
C–N ring deformation mode
1246
1234
1364
1371
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1359
1575
1576
Nonprotonated quinoline mode
2-CO stretching mode
1614
1620
4,6-CO antisymmetric mode
1651
1661
4,6-CO symmetric mode
1705
1691Figure 10
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.Figure 11
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal.Even more interesting was the behavior of the two key absorption bands of the quinuclidine and quinoline moieties of quinine. While these were obscured by the nitrobarbiturate absorption bands in the infrared absorption spectra of the cinchonine and cinchonidine cocrystal products, they were observed in the spectrum of the quinine cocrystal. However, the energy of the nonprotonated quinoline vibrational mode was only barely shifted in the spectrum of the cocrystal (1576 cm−1 for quinine versus 1575 cm−1 for its cocrystal), while the energy of the nonprotonated quinuclidine vibrational mode was definitely shifted (1371 cm−1 for quinine versus 1364 cm−1 for its cocrystal). This finding would imply that while the dominant interaction between 5-nitrobarbituric acid and cinchonine or cinchonidine was between the acid and the quinoline ring, the dominant interaction between 5-nitrobarbituric acid and quinine was between the acid and the quinuclidine ring nitrogen.Quinine also contains a methoxy group bound on the quinoline ring that is not present for either cinchonine or cinchonidine. In the spectrum of the free base, the vibrational bands associated with the methoxy group were observed as a strong doublet of peaks (having energies of 1227 and 1240 cm−1) that each underwent significant shifting in the spectrum of the cocrystal (1234 and 1252 cm−1). This observation indicates that while the quinoline ring nitrogen was not strongly involved in the intermolecular interactions of the synthon, its methoxy group certainly was.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, quinine, and the 1 : 1 nitrobarbituric-quinine cocrystal are shown in Figure10, and the correlation between the energies of the important absorption bands is shown in Table 6. The strong 5-nitrobarbiturate vibrational modes were found to undergo shifts in energy relative to the free acid, as would be expected since the entire ring system of the 5-nitrobarbituric acid is involved in the cocrystal formation. As had been noted in the infrared absorption spectra, the energy of the nonprotonated quinuclidine mode was significantly shifted in the spectrum of the cocrystal, while the vibrational mode of the nonprotonated quinoline group barely underwent any change in energy. These findings provide further support that the predominant interaction with 5-nitrobarbituric acid took place at the quinuclidine group.Table 6
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, quinine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
368
Carbonyl out-of-plane bending mode
625
610
Carbonyl out-of-plane bending mode
695
679
N–H out-of-plane bending mode
846
834
C–N stretching mode
1150
1125
C–N deformation mode
1255
1242
1359
1366
Nonprotonated quinuclidine mode
1586
1585
Nonprotonated quinoline mode


## 3.7. The 1 : 1 Quinidine Cocrystal Formed with 5-Nitrobarbituric Acid

The XRPD patterns obtained for 5-nitrobarbituric acid, quinidine, and the nitrobarbiturate-quinidine cocrystal product are shown in Figure12, where it may be noted that the degree of crystallinity associated with the cocrystal was substantially less than that of the reactants. Nevertheless, the unique diffraction pattern obtained for the 1 : 1 stoichiometric reaction pattern relative to those of the reactants establishes the existence of a genuine cocrystal.Figure 12
X-ray powder diffraction patterns of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.The nitrobarbiturate-quinidine cocrystal product proved to be unique in that it barely evolved 0.25% of its mass when heated isothermally at 125°C and was therefore determined to be a nonsolvated solid-state form. This type of cocrystal product is totally different from that of its stereochemical analogue, as the nitrobarbiturate-cinchonine cocrystal product was characterized by the highest degree of hydration among the cocrystals studied. The DSC thermogram of the nitrobarbiturate-quinidine cocrystal product did not contain a desolvation endotherm and instead consisted of a weak melting endothermic transition having a temperature maximum of 196°C and an enthalpy of fusion equal to 15 J/g. At a temperature of 230°C the cocrystal was found to undergo a strong exothermic decomposition reaction.The fingerprint region infrared absorption spectra obtained for 5-nitrobarbituric acid, quinidine, and the cocrystal product are shown in Figure13, and the correlation between the energies of the important absorption bands is shown in Table 7. The trends in vibrational energies of the strong nitrobarbiturate absorption bands in the spectrum of the cocrystal were found to be consistent with those of the cocrystals with cinchonine and cinchonidine, and the two key absorption bands of the quinuclidine and quinoline moieties of quinidine were obscured by the nitrobarbiturate absorption bands.Table 7
Assignments of the major bands in the fingerprint region of the infrared absorption spectra of 5-nitrobarbituric acid, quinidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinidine (cm−1)
Assignment
Carbonyl out-of-plane bending mode
779
756
C–N ring deformation mode
1246
1240
Obscured and not observed
1360
Nonprotonated quinuclidine mode
Nitro group symmetric stretching mode
1381
1362
Obscured and not observed
1562
Nonprotonated quinoline mode
2-CO stretching mode
1614
1622
4,6-CO antisymmetric mode
1651
Not observed
4,6-CO symmetric mode
1705
1690Figure 13
Infrared absorption spectra within the fingerprint region of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.The fingerprint region Raman spectra obtained for 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal are shown in Figure14, and the correlation between the energies of the important absorption bands is shown in Table 8. All of the strong 5-nitrobarbiturate vibrational modes were noted to undergo shifts in energy relative to the free acid, confirming as before that the entire ring system of the acid is involved in the cocrystal formation. The energy of the nonprotonated quinuclidine mode (1363 cm−1) was barely shifted in the spectrum of the cocrystal (1362 cm−1), while the vibrational mode of the quinoline moiety was noted to undergo a significant increase in energy from 1561 cm−1 to 1570 cm−1. These findings indicate that, in this cocrystal system, the predominant interaction with 5-nitrobarbituric acid took place at the quinoline group and that the degree of interaction with the tertiary nitrogen of the quinuclidine group was minimal.Table 8
Assignments of the major bands in the fingerprint region of the Raman spectra of 5-nitrobarbituric acid, quinidine, and their 1 : 1 cocrystal product.
Assignment
Nitrobarbituric (cm−1)
Cocrystal (cm−1)
Quinidine (cm−1)
Assignment
Carbonyl in-plane bending mode
379
365
Carbonyl out-of-plane bending mode
625
608
Carbonyl out-of-plane bending mode
695
681
N–H out-of-plane bending mode
846
836
C–N stretching mode
1150
1144
C–N deformation mode
1255
1243
1362
1363
Nonprotonated quinuclidine mode
1570
1561
Nonprotonated quinoline modeFigure 14
Raman spectra within the fingerprint region of 5-nitrobarbituric acid, quinidine, and the 1 : 1 nitrobarbituric-quinidine cocrystal.


## 4. Conclusions

X-ray powder diffraction and thermal analysis have been used to demonstrate the existence of new solid-state forms generated by the cocrystallization of 5-nitrobarbituric acid with four cinchona alkaloids. The cocrystal products were found to contain varying degrees of hydration, ranging from no hydration in the nitrobarbiturate-quinidine cocrystal up to a 4.5-hydrate species in the nitrobarbiturate-cinchonine cocrystal. Raman spectra of the products were used to determine the predominant mode of interaction in the nitrobarbiturate-cinchona synthon. For the nitrobarbiturate cocrystals with cinchonine, cinchonidine, and quinidine, the predominant interaction was with the quinoline ring system of the alkaloid. However, for quinine, the predominant interaction was with the quinuclidine group of the alkaloid.Previous papers in this series [26, 27] have established that the variety of morphologies encountered for the molecular complexes of basic substances with 5-nitrobarbituric acid (dilituric acid) arises from the ability of the nitrobarbiturate reagent to form differing structural types and/or hydrates upon crystallization. The nonequivalence observed for the powder X-ray diffraction patterns demonstrates that each isolated adduct exhibits a unique crystal structure, which in turn yields differing crystal morphologies. This behavior has been further verified in the present study, where the differing range of hydrate and structural types would serve to easily differentiate the cinchona alkaloids from each other, even when different compounds contained the same absolute configurations at their dissymmetric centers.



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