# Synthesis of CdS Nanocrystals by Employing the By-Products of the Anaerobic Respiratory Process ofDesulfovibrio alaskensis 6SR Bacteria

Authors: L. G. Rangel-Chávez; M. I. Neria-González; A. Márquez-Herrera; M. Zapata-Torres; E. Campos-González; O. Zelaya-Angel; A. Guillen-Cervantes; J. L. Fernandez-Muñoz; M. Melendez-Lira
Journal: Journal of Nanomaterials
 (2015)

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## Abstract

A novel methodology for the direct synthesis of CdS nanoparticles, using a biological agent that avoids the extracellular processing, and the results of the characterization of CdS nanocrystals are presented. The by-products of the anaerobic respiratory process ofDesulfovibrio alaskensis 6SR along with aqueous solutions of Cd salts were successfully employed to produce CdS nanocrystals with mixed cubic and hexagonal phases. Nanocrystal size has a narrow size distribution with little dependence on the Cd concentration. Both the presence of the crystallographic cubic phase and the crystalline order decrease as Cd concentration increases. The band gap values obtained from optical transmission measurements are lower than those of the bulk crystal. Raman spectroscopy characterization agrees with electron transmission microscopy images and X-ray diffraction results indicating that the method promotes the formation of high structural quality nanocrystals when low concentrations of the Cd salt are used.


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## Body

## 1. Introduction

Nanobiotechnology offers the use of microorganisms to synthesize a variety of inorganic nanoparticles with well-defined chemical composition, size, and morphology. This approach allows the development of ecofriendly technologies for the synthesis of materials with technological applications [1]. Cadmium sulfide (CdS) is a II–VI semiconductor with a band gap value of 2.42 eV at room temperature. It has shown great potential for the manufacture of different devices such as second-generation photovoltaic panels, optical sensors, light-emitting diodes, and transistors [2–8]. Current approaches for synthesizing CdS as thin film or powder include different techniques, that is, hydrothermal/solvothermal routes, thermal decomposition, chemical bath deposition, laser ablation, and radio frequency sputtering. These may require multiple steps and energy-intensive process as thermal treatments at high temperature [9]. In general, to control both the size and dispersion size of the produced nanoparticles is cumbersome; additionally, conventional procedures are limited at small scale reactions. On the other hand, the use of cadmium for CdS production generates some resistance owing to the carcinogen effects associated with it. However, the wide range of applications of CdS nanoparticles has incentivized the search for new routes for its synthesis involving both low energy consuming processes and reduced production of toxic by-products.Synthesis of nanoparticles using biological entities has gained great interest due to the capability of producing nano- and microlength scaled inorganic materials [10]. Moreover, biological methods are simpler and less expensive and allow a better control of the size and size dispersion of the nanoparticles [11]. The synthesis and assembly of nanoparticles using plants, bacteria, and fungi can be considered as “green chemistry” procedures. Unicellular and multicellular organisms are able to produce inorganic materials either intra- or extracellularly [12, 13]. Sulfate reducing bacteria (SRB) are a group of microorganisms with anaerobic respiration; they are capable of using sulfates as electron acceptors and it is reduced to sulfide by oxidation of organic material. The production of hydrogen sulfide by SRB induces pitting corrosion on steel, turning SRB into a nuisance in some industries. However, the increase in the knowledge related to SRB has given place to several biotechnological applications. In the field of bioremediation, SRB are of great utility to remove heavy metals. The production of hydrogen sulfide by SRB allows the precipitation of metallic ions (Me2+) present in contaminated effluents. This process is described by the following reactions: (1)
Organic matter
e
-
donor
+
SO
4
2
-
e
-
acceptor
⟶
2
CH
3
COO
-
+
HS
-
+
HCO
3
-
(2)
Me
2
+
+
HS
-
⟶
MeS
↓The generation of sulfide diminishes the acidity promoting the precipitation of metals as insoluble metal sulfides that can be easily separated [14]. The species of the genusDesulfovibrio are the most studied in this field, showing a high efficiency in the removal of different metallic ions as Zn, Pb, Cu, Cd, Ni, and Cr [15, 16]. There is evidence that nanoparticles prepared by biosynthesis are far superior in several ways to those prepared by chemical methods. In particular, for the biosynthesis of CdS nanoparticles, until now, most of the methods employed have had the drawback of requiring the presence of the cell, whereas CdS synthesis can be achieved inside or outside the cell [17, 18]. The accumulation of H2S in a biological reactor inhibits cellular proliferation; it has been estimated to show up at concentrations between 565 and 735 mgL−1 [19–21]. The methodology proposed in this work would both improve the biological efficiency of the process and the production of higher purity CdS nanoparticles.This paper highlights the use of the hydrogen sulfide generated by the anaerobic respiration ofDesulfovibrio alaskensis 6SR to synthesize CdS nanoparticles with controllable size and crystallographic structure. Hydrogen sulfide production was achieved from a reactor whereDesulfovibrio alaskensis 6SR was cultured, and then it was fed into a chemical reactor, containing a cadmium solution, to obtain CdS. The procedure was carried out in anaerobic conditions under N2 atmosphere. The main goal of this work was to show that the CdS nanoparticles prepared from the hydrogen sulfide generated by the anaerobic respiration ofDesulfovibrio alaskensis 6SR bacteria possess crystalline quality and physical properties either comparable to or better than those of the commercial material. The obtained material was characterized by X-ray diffraction, transmission electron microscopy, and optical transmission and Raman spectroscopies. The results showed that the process permits controlling the crystallographic structure through the Cd content in the solution. By employing low Cd salt contents, CdS samples with higher crystalline order are obtained and the growth of CdS crystals with cubic structure is promoted.


## 2. Experimental Section

Desulfovibrio alaskensis 6SR was growing on Postgate’s medium C [22], which contained (g/L) KH2PO4 (0.5), NH4Cl (1.0), Na2SO4 (4.5), MgSO4·7H2O (0.06), sodium lactate (5.0), CaCl2·H2O (0.06), yeast extract (1.0), sodium citrate (0.3), and NaCl (30.0). The medium was adjusted to pH 7.0 and 0.045 L of medium was placed into 0.12 L serum bottles. These vessels were capped with crimped aluminum butyl rubber stoppers and sterilized in an autoclave at 121°C. Water (1.20 L) was heated to boiling point until reducing its volume to 1.0 L; then the water was cooled at room temperature, under a stream of N2; 0.045 L oxygen-free water was dispensed into serum bottles and sealed. A cadmium acetate stock solution was prepared at 10 g/L with respect to the ion Cd2+ and sterilized by membrane filtration (pore size: 0.22 μm); the water used to prepare this solution was oxygen-free water. Culture medium and cadmium solution were prepared and dispensed in anaerobic conditions under N2 (99.998% purity) atmosphere. The bottles with oxygen-free water were spiked with the cadmium solution to obtain different concentrations of cadmium (170–400 mg/L or ppm). All used reagents were of analytical grade and were obtained from Sigma-Aldrich company.A system of two reactors was employed to synthesize the CdS nanoparticles: a biological reactor for the culture and a chemical reactor, where the hydrogen sulfide and cadmium ions reacted to form the CdS; see Figure1. CdS was obtained by centrifugation at 5000 rpm for 15 min; the powder was washed with a solution of acetone-water (4 : 1) following centrifugation at 5000 rpm for 5 min. The crystallographic properties of the samples were studied by X-ray diffraction (XRD) carried out in a Siemens D5000 system employing the CuKα wavelength. The structure of the samples was observed by transmission electron microscopy (TEM), using a JEOL2010 system operated at 200 kV. Transmission measurements were done employing a lock-in standard technique using a 275 M Acton single spectrometer equipped with 1200 lines/mm grating blazed at 500 nm and a silicon photomultiplier as detector. Powders were stuffed in a cylindrical hole with 2 mm height and 1 mm diameter. Micro-Raman measurements were carried out employing an HJY-LabRam system using the 632.8 nm line of a HeNe laser.Figure 1
Experimental setup for the growth of the CdS nanoparticles.


## 3. Results and Discussion

The XRD patterns of the samples obtained employing (a) 170 ppm, (b) 200 ppm, (c) 300 ppm, and (d) 400 ppm of the Cd salt solution are displayed in Figure2. The diffraction peaks were indexed using the powder diffraction files JCPDF numbers 100454 and 4110419 for the cubic and hexagonal phases of CdS, respectively. No reflection was obtained related only to the CdS cubic phase for any sample. In all the X-ray patterns, the peaks related to the cubic phase overlapped with those related to the hexagonal phase. Both structural phases have the same density and composition; hence, the contribution of each phase to the peak intensity is related to its structure factors and multiplicities in the overlapping peaks. To determine the percentage of each phase, it was necessary to adopt a quantitative phase analysis by means of the Rietveld method. The used software was the Powder Cell software V. 2.4.  The crystal data used in the quantitative phase analysis are given in Table 1 for the cubic and hexagonal phases of CdS, respectively [23, 24]. The inset of Figure 2 shows representative X-ray diffractogram obtained by the Rietveld refinement for the sample grown with 400 ppm of the Cd salt; the continuous line corresponds to the experimental data, and circles symbols represent the calculated intensity obtained from the adjustment. To illustrate the quality of the fitting, the inset shows the region from 20 to 50 degrees. A similar adjustment was obtained for all samples. Table 2 shows the results obtained with the Powder Cell software for (a) the amount of each phase, (b) the grain size, and (c) the adjustment factor R
w
p. It can be seen that for all samples there is a hexagonal phase proportion of the order of 70 to 80 percent and a grain size around 15 nm.Table 1
Crystal data for the cubic and hexagonal phase of CdS.
Atom
Wyckoff position
x
y
z
ON
Cubic phase of CdS employed in the Powder Cell Program calculations:a = 5.811 Å, spatial group: F-43m (216), Z
=
4.
Cd
4
a
0
0
0
1
S
4
b
0.25
0.25
0.25
1
Hexagonal phase of CdS employed in the Powder Cell Program calculations:a = 4.136 Å, c = 6.713 Å, spatial group: P63mc (186) Z
=
2.
Cd
2
b
0.3333
0.6667
0
1
S
2
b
0.3333
0.6667
0.37715
1
ON: occupation number.Table 2
Percent of phases, grain size, and adjustment factor (R
wp) as obtained from XRD analysis.
Sample
Cubic phase (%)
Hexagonal phase (%)
Grain size (nm)
R
wp(%)
Band gap (eV)
170 ppm
30
70
17
10.3
2.226
200 ppm
17
83
17
6.2
2.220
300 ppm
27
73
10
11.1
2.146
400 ppm
22
78
15
7.5
2.157Figure 2
Diffractograms of CdS samples grown employing a solution with Cd concentration of (a) 170 ppm, (b) 200 ppm, (c) 300 ppm, and (d) 400 ppm. The inset shows representative fitting, represented by circles, employing the Rietveld methodology corresponding to sample 400 ppm.Figure3 shows representative TEM micrographs for samples produced employing (a) 170 ppm and (c) 400 ppm, together with the electron diffraction pattern, and high resolution transmission micrographs (HRTM) at selected areas for (b) 170 ppm and (d) 400 ppm. For all studied samples, nanoparticles, whose shape was affected by the Cd content in the solution, were observed. While for the sample grown with 170 ppm the shape of nanoparticles is irregular, it evolves toward an ellipsoidal shape for the sample grown with 400 ppm. The detailed analysis of the growth process of the crystals is far from the scope of this work but it is clear that shape evolution is influenced both by the amount of Cd ions available for the formation of CdS and the lack of spatial restrictions during crystal growth. High quality crystals were produced, as can be inferred from the crystalline planes observed by HRTM. In agreement with XRD results, TEM micrographs show a mixture of cubic and hexagonal phases for the whole set of samples studied. It is worth mentioning that the presence of cubic crystals with dimensions around 1-μm was observed in TEM micrographs for the sample grown with 170 ppm, not shown here. Electron diffraction patterns indicate that those crystals grown using a solution with low Cd content depicted a greater order, suggesting that a tight control of the composition could promote the preferential growth of the cubic or the hexagonal phase. Electron diffraction patterns clearly show that crystalline disorder increases as the employed Cd concentration increases. These results are in agreement with reports of other authors indicating that the growth rate and sulfur content could influence the crystalline quality of crystals [25, 26]. A deeper analysis of the micrographs was carried out in order to determine the size distribution and the crystal interplanar distances. The particle sizes distribution (PSD) and the average size (Dp) of agglomerated nanoparticles were calculated using theImageJ 1.46c software. The number and weight average of the particle size (D
n and D
w, resp.) and polydispersity index in sizes (PDI) of the nanoparticles were calculated using a standard procedure [27].Figure 3
Left: transmission electron micrographics of samples: (a) 170 ppm and (c) 400 ppm along with the nanoparticles size distribution. Right: high resolution TEM micrographics for samples: (b) 170 ppm and (d) 400 ppm including the selected area electron diffraction pattern.The insets in Figures3(a) and 3(c) show the PSD of CdS nanoparticles of samples grown employing 170 and 400 ppm, respectively. For sample grown using 170 ppm, it can be seen that a relatively narrow PSD can be obtained by this growth method with sizes ranging from 7 to 39 nm. The corresponding D
n was 18.7 nm with PDI of 1.1 (PDI describes the monodispersity of nanoparticles distribution). For the sample grown employing a concentration of 400 ppm of the Cd salt, crystal sizes between 10 and 46 nm were obtained with D
n and PDI values equal to 21.7 nm and 1.2, respectively. Because a value of PDI near to 1.0 implies a narrow and monodispersed distribution while higher values are associated with wider and polydispersed distributions, it is inferred that the PSDs obtained by this methodology are monodispersed. It is interesting to notice that the average size of the nanoparticles obtained from the study of TEM micrographs agrees closely with those reported in Table 2, obtained from XRD analysis.Further structural characterization was carried out by high resolution TEM (HRTEM). Figures3(b) and 3(d) showed the HRTEM image taken from a localized region within a single nanoparticle. The crystallographic planes observed showed that nanocrystals grown at 170 ppm have a preferential growth direction while for the sample produced with higher Cd content different plane orientations are observed within the CdS nanocrystal. The insets in these figures show a selected area electron diffraction (SAED) pattern in which a ring structure typical of a polycrystalline structure can be observed [28, 29].In agreement with the XRD results for the samples, the SAED patterns were indexed to Hawleyite cubic and Greenockite hexagonal CdS (JCPDF numbers 100454 and 411049). In Figure3(b), the SAED pattern obtained from sample 170 ppm is shown. The whole set of the allowed reflections for the hexagonal CdS crystal can be found in this ring pattern, indicating that the grains in the powders are randomly oriented. However, only the ring associated with the (200) cubic plane is labeled to emphasize the presence of the cubic crystalline phase. Figure 3(d) shows the SAED pattern of the 400 ppm sample. UsingImageJ 1.46a software, the distance between lattice fringes was obtained. The 0.33 nm separation between the lattices fringes measured in both HRTEM images agrees well with the unit cell parameters of CdS. However, at this point, it is not possible to establish the crystallographic phase of the CdS nanocrystals because the interplanar separation of both the (111) planes of the cubic phase and the (002) planes of the hexagonal phase is the same.The results reported until now indicated clearly that CdS nanocrystals were successfully prepared by employing the sulfide gas produced by the biological process of the sulfate reducing action ofDesulfovibrio alaskensis 6SR. To further characterize the potential use of this material as a semiconductor in the diverse applications, it is necessary to characterize its electronic properties. Hence, to obtain the band gap value is fundamental to fully characterize the electronic properties of the material. Figure 4 presents the spectra for the studied samples after smoothing out the experimental spectra. The inset shows the spectrum for a commercial sample along with the curve obtained by fitting it, considering the simple model T
=
I
/
I
0
=
e
(
-
α
d
) and considering the model of direct transitions between parabolic bands for the absorption coefficient:(3)
T
=
I
I
0
=
e
-
α
d
(4)
α
=
M
h
ν
-
E
0
1
/
2
.Figure 4
Optical transmittance of samples prepared with the Cd concentration indicated in the figure. Comm refers to the spectrum of a sample prepared with CdS powder from Sigma-Aldrich. The inset shows representative fitting to the model of direct transitions between parabolic bands along with the experimental spectrum.As usual, the symbols employed in (3) and (4) correspond to the transmission (T), transmitted intensity (I), incident intensity (I
0), absorption coefficient (α), sample thickness (d), transition matrix (M), energy of the light beam (h
ν), and band gap (E
0). The fittings afford a reasonable approximation to the band gap value and are reported in Table 2. The band gap values are lower than the obtained ones for the commercial CdS powder and lower than the reported 2.42 eV value of the bulk CdS crystal. It is worth noting that the band gap value of the nanocrystals decreases as the Cd salt content increases. Considering only the size of the CdS crystals determined by XRD analysis and clearly observed by TEM micrographs, the fact above mentioned is counterintuitive because the band gap should increase because of quantum confinement [30]. A possible explanation for the absence of quantum confinement effects could be that there is no capping material acting as confining barrier. Band gap values lower than those accepted for bulk CdS have been observed in thin films and are associated with the coexistence of the cubic and hexagonal phases [31]. In this case, besides the aforementioned possibility, the observed band gap reduction could be due to the fact that the surface of the CdS nanocrystals is not passivated; thus, the associated surface states will affect strongly the electronic properties of the material [32]. Marked reductions in the band gap value of FeS2 associated with surface states have been reported [33].The structural quality of the materials plays an important role in devices performance; usually there is a compromise between the cost of production and the application. One of the advantages of CdS is that even the material produced with low crystalline quality is useful in the massive production of low cost photovoltaic devices. The approach shown here to produce CdS is a low cost alternative and, according to TEM results shown above, allows obtaining high quality material which could have a positive impact on the improvement of the efficiency of the CdTe/CdS photovoltaic heterostructure. Further structural information can be obtained by studying the vibrational properties through Raman spectroscopy. Phonons are associated with infinite crystals but it has been shown that Raman spectroscopy is also useful in the study of nanocrystals. However, theoretical developments are needed to produce models that take into account crystal imperfections [34, 35]. The activation of phonons due to impurities, crystal size, and disorder effects in cadmium sulfide have been studied widely employing Raman spectroscopy [36–38].Figure5 shows the normalized Raman spectra of the samples studied here. The stronger features in all the spectra are located at 215 and 303 cm−1 related to the A1-TO and the LO mode, respectively, and LO overtone at 603 cm−1 [39]. Small peaks at 345 and 368 cm−1 become stronger for the samples grown with higher Cd salt content and could be associated with an increase in the structural disorder of the particles. The presence of bands associated with disorder around 100, 215, and 307 cm−1 has been clearly established and is also observed in the commercial CdS (see the inset in Figure 5). Raman spectrum of sample 170 ppm presents additional features at 430 and 710 cm−1. The peak at 430 cm−1 is observed for the sample grown with the lowest salt content, but its strength decreased until it practically disappeared for the 400 ppm sample. This peak could be an overtone of the 215 cm−1 peak, and its presence could be associated with the structural quality of this sample. It seems that the presence of cubic phase is more important in samples produced at low Cd salt concentrations. The additional features at 430 and 710 cm−1 could be phonons due to the CdS cubic phase; for now, this is highly speculative, and further work is under development.Figure 5
Normalized Raman spectra of the samples prepared with a solution with Cd concentration of (a) 170 ppm, (b) 200 ppm, (c) 300 ppm, and (d) 400 ppm. The inset shows the comparison of the Raman spectrum of the sample prepared with a solution with Cd concentration of 170 ppm with that obtained using a commercial CdS sample.


## 4. Conclusions

CdS nanoparticles have been successfully prepared by employing the sulfide produced by anaerobic respiration ofDesulfovibrio alaskensis 6SR. This approach keeps the advantages associated with the biosynthesis of materials, that is, low energy consumption, low amount of toxic residuals, and high structural quality, but overcomes the necessity of additional processing for separation of residues of intra- or extracellular tissue. The highest structural quality is obtained using lower concentrations of the Cd salt. The presented results suggest that CdS crystal quality may be controlled through the Cd salt concentration employed. The methodology adds value to the cadmium cleaning process by producing a semiconductor material with a potential use in the photovoltaic industry and it would be easily scaled up.



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*Source: 260397-2015-09-28.xml*