# Epidemiological Study of Japanese Encephalitis Virus in Vientiane, Lao PDR, in 1990s

Authors: Mika Saito; Douangdao Soukaloun; Khampe Phongsavath; Bounlay Phommasack; Yoshihiro Makino
Journal: The Scientific World Journal
 (2015)

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## Abstract

Phylogenetic analysis of Japanese encephalitis virus (JEV) was conducted using core-premembrane and envelope gene sequence data of two strains from Vientiane, Lao People’s Democratic Republic, in 1993 and five from Okinawa, Japan, in 2002 and 2003, and previously published strains. The two Vientiane strains designated as LaVS56 and LaVS145 belonged to genotype 1 (G1) and the same subcluster of G1 as Australian strain in 2000, Thai strains in 1982–1985 and 2004-2005, and Vietnamese strain in 2005, but were distinct from the subcluster of recently distributing G1 strains widely in Asia including Okinawan strains and recent Lao strain in 2009. These clusters with own distinct distributions indicated involvements of different mechanisms and routes of spreading viruses and clarified that Australian G1 strain is from Southeast Asia, not from East Asia. Both Vientiane strains were antigenically close to P19-Br (G1, isolate, Thailand), but distinct from Nakayama (G3, prototype strain, Japan), Beijing-1 (G3, laboratory strain, China), and JaGAr#01 (G3, laboratory strain, Japan), demonstrated by cross-neutralization tests using polyclonal antisera. These results together with seroepidemiologic study conducted in Vientiane strongly suggest that diversified JEV cocirculated there in early 1990s.


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## Body

## 1. Introduction

Japanese encephalitis (JE) is a feared disease with a high mortality rate and grave sequelae in the form of neurological and mental impairments [1]. The pathogen responsible for the disease, Japanese encephalitis virus (JEV), belongs to theFlavivirusgenus of the family Flaviviridae, a single-stranded positive-sense RNA virus, which includes emerging and reemerging pathogens such as West Nile virus and dengue viruses [2, 3]. The genome of JEV is approximately 11,000 bases in length and encodes 3 structural proteins (C: capsid, PrM: premembrane, and E: envelope proteins) and 7 nonstructural proteins (NS1, NS2A, NS2B, NS3, NS4A, NS4B, and NS5). JEV is transmitted to humans by vector mosquitoes from vertebrates, with pigs usually acting as the principal viremic host, and birds, particularly ardeid species, serving as maintenance reservoirs in the wild [2, 4].Culex tritaeniorhynchus is the most efficient vector and breeds in bodies of stagnant water such as paddy fields [5].Five genotypes of JEV based on structure protein sequences, with geographically distinct distributions, have been described [6–8]. Genotype 2 (G2) has been isolated in Southern Thailand, Malaysia, Papua New Guinea (PNG), and Northern Australia, with one strain recognized in the Republic of Korea (ROK) prior to 1951 [9]. Genotype 3 (G3) has been widely distributed throughout Asia. Genotype 4 (G4) has only been isolated in Indonesia between 1980 and 1981 [7]. Only one Singapore strain from 1951 had been recognized as genotype 5 (G5), but it recently reemerged in China and ROK after more than 50 years [10–12].Before the 1990s, genotype 1 (G1) was distributed in a limited area, from Northern Thailand to Cambodia. It has since moved into Vietnam, China, ROK, Japan, Taiwan, and even Australia, mostly via the so-called genotype-shift phenomenon, whereby a preexisting genotype disappears and is supplanted by another genotype [13–17]. This phenomenon was suggested not to be caused by the intensity of selection [12, 18]. Migratory birds, winds capable of carrying vector insects, travel, and transport are believed to have important roles in the spread of emerging genotypes to new territories; however, the mechanisms involved remain unclear [4].Lao PDR is a landlocked country situated on the Indochinese peninsula. Geographically, the Annamite Range and the Mekong River lie on its borders, separating the country from Thailand and Vietnam. Only a little information about JE in Lao PDR is available. Okuno [19] first described 34 seasonal encephalitis cases possibly caused by JEV in 1974. Several seroepidemiological studies were conducted on JE in Lao PDR in the 1990s and 2000s [20–25]. An endemic pattern was discovered by studies in which prevalence rates of JE antibodies increased gradually with age in residents and changed seasonally in slaughtered swine in the 1990s [21]. Mackenzie et al. [4] speculated that the low numbers of reported cases were due to a lack of accurate indications and the absence of good surveillance. According to recent reports, an epidemic of JE is occurring [26], with about 50 cases diagnosed serologically between 2001 and 2008 at the largest hospitals in Vientiane [27]. Vaccination programme now includes JE vaccine using SA14-14-2 strains in Lao PDR.The genetics of JEV is well studied in Lao’s neighbors Thailand and Vietnam, which had epidemics of JE during the 1990s, with G1 and G3 as the major genotypes, respectively, but not in Lao PDR. After a case of the genotype-shift phenomenon, namely, G3 to G1 in Vietnam, the major subclusters of G1 Vietnamese and Thai strains were different [28]. Recently, the complete sequence of a JEV isolate from a patient in 2009 in Lao PDR was reported [29]; however, antigenic and genetic analyses of JEV were not described.In the present study, we sequenced the C/PrM and E protein regions of two JEV isolates from swine sera collected in Vientiane, Lao PDR, in 1993, and analyzed those of isolates phylogenetically by comparison with sequenced G1 Okinawan strains and previously published sequence data of strains from different regions and periods, as well as antigenically by cross-neutralization testing and seroepidemiologically. The possible routes of JEV spread and coexistence of diverse forms of JEV strains in Vientiane, Lao PDR, are discussed.


## 2. Material and Methods

### 2.1. Cell Culture

The mosquitoAedes albopictus clone C6/36 cell line was grown at 28°C with Eagle’s minimum essential medium (MEM) supplemented with seven nonessential amino acids and 8% heat-inactivated fetal bovine serum (FBS). Baby hamster kidney-21 (BHK-21) and African green monkey kidney (Vero) cell clones were grown at 37°C in 8% FBS-Eagle’s MEM as growth medium. All cell clones were maintained with 2% FBS-Eagle’s MEM as maintenance medium in a 5% CO2 atmosphere when the virus isolation and neutralization test were being conducted.


### 2.2. Collection of Serum Samples

A total of 641 swine serum samples were collected monthly in 1993 and 1994, from domestically reared pigs at a private slaughterhouse in Vientiane Municipality of Lao PDR [21].Human serum samples from 45 viral encephalitis-suspected patients were collected at acute and convalescent phases in 1994 at two of the largest hospitals in Vientiane. Samples from 8 patients confirmed to have JE in Chiang Mai, Thailand, in 1991 were kindly supplied by Associate Professor Sittisombut, Chiang Mai University. Samples from 2 confirmed cases of JE in Okinawa in 1991 were also used [30]. A total of 278 serum samples from children under 13 years old were collected at the Ministry of Health kindergarten and Paxai Primary School, both in the Sisattanak District, located in an urban area of Vientiane, from January to March (dry season), 1994.Antisera against 5 strains of JEV, Nakayama (a prototype and vaccine strain, Tokyo, Japan, human brain, 1935, G3), Beijing-1 (a laboratory and vaccine strain, Beijing, China, human brain, 1949, G3), P19-Br (an isolate, Chiang Mai, Thailand, human brain, 1982, G1), LaVS56 (an isolate, Vientiane, Lao PDR, swine sera, 1993, G1), and LaVS145 (an isolate, Vientiane, Lao PDR, swine sera, 1993, G1), were prepared in BALB/c mice as described previously [31]. Before serologic testing, sera were inactivated at 56°C for 30 minutes.


### 2.3. Isolation and Identification of Viruses

A total of 196 among 641 swine serum samples that tested negative for JE antibodies in an IgG ELISA [21, 32] were tested for the virus. The virus isolation and identification procedure were as described previously [15, 33].


### 2.4. Sequences

Two hundred and forty nucleotides of the core-premembrane (C/PrM) gene region and 1500 nucleotides of the envelope (E) gene region of two Vientiane JEV isolates and the E region of five Okinawan isolates, Oki 431S, Oki 128S, Oki 568S, Oki 585S, and Oki 589S, were sequenced (Table1). Viral RNA was extracted from a JEV-infected C6/36 cell culture by using an RNeasy Mini Kit (Qiagen, Hilden, Germany) or QIAamp Viral RNA Mini Kit (Qiagen) according to the manufacturer’s instructions. RT-PCR was performed using the QIAGEN OneStep RT-PCR Kit (Qiagen) also according to the manufacturer’s instructions. RT-PCR products were purified using a QIAamp MinElute column (Qiagen) or MinElute Gel Extraction Kit (Qiagen). The products were then sequenced with a BigDye Terminator v.1.1 or v.3.1 cycle sequence kit (Applied Biosystems) and further purified using a DyeEx 2.0 Spin Kit (Qiagen). The sequencing reactions were analyzed on an ABI PRISM 310 and 3100 DNA sequencer (Applied Biosystems). The primers referred to previous publications [14, 34].Table 1
JEV isolates analyzed in this study.
Strain
Year
Location
Source
Genotype
Accession number
C/PrM
E
Nakayama
1935
Tokyo, Japan
Human brain
3
U03694
S75726
Beijing-1
1949
Beijing, China
Human brain
3
L48961
L48961
P20778
1958
Vellore, India
Human brain
3
AF080251
AF080251
JaGAr#01
1959
Gunma, Japan
C. tritaeniorhynchus
3
D00961
AF069076
M-859
1967
Cambodia
C. gelidus
1
D00984
U70410
WTP/70/22
1970
Kuala Lumpur, Malaysia
Mosquito
2
D00998
U70421
M28
1977
Yunnan, China
C. pseudovishnui
1
JF706279
JF706279
Th2372
1979
Thailand
Human brain
1
D76424
U70401
VN-118
1979
Ho Chi Minh, Vietnam
C. fatigans
3
D00975
U70420
JKT7003
1981
Indonesia
Mosquito
4
L42161
U70408
JKT9092
1981
Indonesia
Mosquito
4
L42158
U70409
JKT5441
1981
Indonesia
Mosquito
2
L42164
U70406
P19-Br
1982
Chiang Mai, Thailand
Human brain
1
D76427
JEU70416
B-0860/82
1982
Thailand
Pig
1
GQ902058
GQ902058
1070/82
1982
Thailand
Human
1
GQ902059
GQ902059
JaOArS982
1982
Japan
Mosquito pool
3
M18370
M18370
YN83-Meng83-54
1983
Yunnan, China
Lasiohelea taiwana Shiraki
1
DQ404062
DQ404130
YN83-83199
1983
Yunnan, China
Culex sp.
1
DQ404063
DQ404131
PhAn 1242
1984
Santo Cristo, Philippines
Swine blood
3
D00982
U70417
B-2239
1984
Chiang Mai, Thailand
Swine blood
1
D00993
U70391
B-1381-85
1985
Thailand
Pig
1
GQ902061
GQ902061
3KP“U”CV569
1985
Thailand
Mosquito
1
GQ902060
GQ902060
4790-85
1985
Thailand
Human
1
GQ902062
GQ902062
YN85-L86-99
1985
Yunnan, China
Culex sp.
1
DQ404064
DQ404132
Naha Meat 54
1985
Okinawa, Japan
Swine blood
3
D85958
DQ355367*
YN86-B8639
1986
Yunnan, China
C. tritaeniorhynchus
1
DQ404065
DQ404133
YN86-86266
1986
Yunnan, China
NA
1
DQ404066
DQ404134
ThCMAr4492
1992
Chiang Mai, Thailand
mosquito
1
D45360
D45362
ThCMAr6793
1993
Chiang Mai, Thailand
C. tritaeniorhynchus
1
D45361
D45363
LaVS56
1993
Vientiane, Lao PDR
Swine serum
1
GQ850124*
GU815346*
LaVS145
1993
Vientiane, Lao PDR
Swine serum
1
GQ850123*
GU815345*
K94P05
1994
Korea
C. tritaeniorhynchus
1
AF045551
AF045551
Ishikawa
1997
Ishikawa, Japan
Swine mononuclear cell
1
AB051292
AB051292
Okinawa/1
1998
Okinawa, Japan
Wild boar
1
NA
AB306941
KV1899
1999
Korea
NA
1
AY316157
AY316157
TS00
2000
Australia
Swine serum
1
AF289814
EF434785
SH-53
2001
Shanghai, China
C. tritaeniorhynchus
1
AY555746
AY555757
VN88
2001
Vietnam
Swine blood
1
NA
AY376464
LN02-102
2002
Liaoning, China
C. modestus
1
DQ404018
DQ404085
Oki 431S
2002
Okinawa, Japan
Swine serum
1
DQ355361
DQ355369*
MIE-41
2002
Mie, Japan
Swine serum
1
NA
AB112709
SIZUOKA-39
2002
Shizuoka, Japan
Swine serum
1
NA
AB112704
KAGAWA-27
2002
Kagawa, Japan
Swine serum
1
NA
AB112707
Oki 128S
2003
Okinawa, Japan
Swine serum
1
DQ355362
DQ355368*
Oki 568S
2003
Okinawa, Japan
Swine serum
1
DQ355363
DQ355370*
Oki 585S
2003
Okinawa, Japan
Swine serum
1
DQ355364
DQ355371*
Oki 589S
2003
Okinawa, Japan
Swine serum
1
DQ355365
DQ355372*
JE-NP-R7
2003
Thailand
Swine blood
1
DQ084216
DQ084228
JE-CP-49
2004
Chumphon, Thailand
Swine blood
1
DQ084223
DQ087974
JE-CP-51
2004
Chumphon, Thailand
Swine blood
1
DQ084225
DQ087973
JE-CP-67
2004
Chumphon, Thailand
Swine blood
1
DQ084222
DQ087972
JE-KK-R87
2004
Khon Kaen, Thailand
Swine blood
1
DQ084218
DQ111788
JE-KK-R88
2004
Khon Kaen, Thailand
Swine blood
1
DQ084219
DQ111786
LA-H06-05
2005
Vietnam
mosquitoes
1
NA
FJ185153
LA.M-2.3
2005
Vietnam
C. pseudovishnui
1
NA
JN574432
JE-CM-1196
2005
Chiang Mai, Thailand
Swine
1
DQ356483
DQ238602
JE-KK-580
2005
Khon Kaen, Thailand
Swine
1
DQ356481
DQ238600
JE-KK-1116
2005
Khon Kaen, Thailand
Swine
1
DQ388999
DQ343290
VNHT/07/2006
2006
Ha Tai, Vietnam
C. tritaeniorhynchus
1
NA
AB728498
JaNAr17-07
2007
Nagasaki, Japan
mosquitoes
1
NA
FJ185149
GSBY0861
2008
Gansu, China
C. tritaeniorhynchus
1
JN381833
JN381833
09P141
2009
Oita, Japan
Swine
1
NA
GU108335
YN0967
2009
Yunnan, China
C. tritaeniorhynchus
1
JF706268
JF706268
JEV/CNS769
2009
Vientiane, Laos
Human brain
1
KC196115
KC196115
NA: not available,*sequenced in this study.


### 2.5. Nucleic Acid Sequence Analysis

Details of all the JEV strains used in the phylogenetic analysis are listed in Table1. Multiple alignments and the phylogenetic analysis were performed by the neighbor-joining (NJ) method using Clustal-X [35]. The bootstrap probabilities of each node were calculated using 1000 replicates. All of the phylogenetic trees were drawn using the NJplot program [36]. For phylogeographic analysis, a map JEV G1 was drawn with published data based on sequences of the E protein, except for Malaysian isolates for the C/PrM region [37].


### 2.6. Serologic Test

For serological analysis of human sera from acute encephalitis cases, six JEV strains (Nakayama, Beijing-1, JaGAr#01, P19-Br, LaVS56, and LaVS145), four prototype strains of dengue virus type 1 (Hawaiian), 2 (New Guinea B), 3 (H-87), and 4 (H-241), and a strain of WNV (Eg-101) were used for fifty percent focus-reduction neutralization tests, as described previously [15].For the antigenic analysis using mouse antisera, cross-neutralization tests against Nakayama, Beijing-1, JaGAr#01, P19-Br, LaVS56, and LaVS145 were conducted.For the seroepidemiological analysis using sera obtained from children, neutralization tests against Nakayama, Beijing-1, and LaVS145 were employed. Sera positive for neutralizing antibodies against any of the three strains were used for the comparison of neutralization reactivity. Neutralizing antibody titers against three strains were plotted in correlation graphs. Pearson’s correlation coefficient was used for paired values. A statistical analysis of Pearson’s correlation coefficient was conducted using thet-test.


## 2.1. Cell Culture

The mosquitoAedes albopictus clone C6/36 cell line was grown at 28°C with Eagle’s minimum essential medium (MEM) supplemented with seven nonessential amino acids and 8% heat-inactivated fetal bovine serum (FBS). Baby hamster kidney-21 (BHK-21) and African green monkey kidney (Vero) cell clones were grown at 37°C in 8% FBS-Eagle’s MEM as growth medium. All cell clones were maintained with 2% FBS-Eagle’s MEM as maintenance medium in a 5% CO2 atmosphere when the virus isolation and neutralization test were being conducted.


## 2.2. Collection of Serum Samples

A total of 641 swine serum samples were collected monthly in 1993 and 1994, from domestically reared pigs at a private slaughterhouse in Vientiane Municipality of Lao PDR [21].Human serum samples from 45 viral encephalitis-suspected patients were collected at acute and convalescent phases in 1994 at two of the largest hospitals in Vientiane. Samples from 8 patients confirmed to have JE in Chiang Mai, Thailand, in 1991 were kindly supplied by Associate Professor Sittisombut, Chiang Mai University. Samples from 2 confirmed cases of JE in Okinawa in 1991 were also used [30]. A total of 278 serum samples from children under 13 years old were collected at the Ministry of Health kindergarten and Paxai Primary School, both in the Sisattanak District, located in an urban area of Vientiane, from January to March (dry season), 1994.Antisera against 5 strains of JEV, Nakayama (a prototype and vaccine strain, Tokyo, Japan, human brain, 1935, G3), Beijing-1 (a laboratory and vaccine strain, Beijing, China, human brain, 1949, G3), P19-Br (an isolate, Chiang Mai, Thailand, human brain, 1982, G1), LaVS56 (an isolate, Vientiane, Lao PDR, swine sera, 1993, G1), and LaVS145 (an isolate, Vientiane, Lao PDR, swine sera, 1993, G1), were prepared in BALB/c mice as described previously [31]. Before serologic testing, sera were inactivated at 56°C for 30 minutes.


## 2.3. Isolation and Identification of Viruses

A total of 196 among 641 swine serum samples that tested negative for JE antibodies in an IgG ELISA [21, 32] were tested for the virus. The virus isolation and identification procedure were as described previously [15, 33].


## 2.4. Sequences

Two hundred and forty nucleotides of the core-premembrane (C/PrM) gene region and 1500 nucleotides of the envelope (E) gene region of two Vientiane JEV isolates and the E region of five Okinawan isolates, Oki 431S, Oki 128S, Oki 568S, Oki 585S, and Oki 589S, were sequenced (Table1). Viral RNA was extracted from a JEV-infected C6/36 cell culture by using an RNeasy Mini Kit (Qiagen, Hilden, Germany) or QIAamp Viral RNA Mini Kit (Qiagen) according to the manufacturer’s instructions. RT-PCR was performed using the QIAGEN OneStep RT-PCR Kit (Qiagen) also according to the manufacturer’s instructions. RT-PCR products were purified using a QIAamp MinElute column (Qiagen) or MinElute Gel Extraction Kit (Qiagen). The products were then sequenced with a BigDye Terminator v.1.1 or v.3.1 cycle sequence kit (Applied Biosystems) and further purified using a DyeEx 2.0 Spin Kit (Qiagen). The sequencing reactions were analyzed on an ABI PRISM 310 and 3100 DNA sequencer (Applied Biosystems). The primers referred to previous publications [14, 34].Table 1
JEV isolates analyzed in this study.
Strain
Year
Location
Source
Genotype
Accession number
C/PrM
E
Nakayama
1935
Tokyo, Japan
Human brain
3
U03694
S75726
Beijing-1
1949
Beijing, China
Human brain
3
L48961
L48961
P20778
1958
Vellore, India
Human brain
3
AF080251
AF080251
JaGAr#01
1959
Gunma, Japan
C. tritaeniorhynchus
3
D00961
AF069076
M-859
1967
Cambodia
C. gelidus
1
D00984
U70410
WTP/70/22
1970
Kuala Lumpur, Malaysia
Mosquito
2
D00998
U70421
M28
1977
Yunnan, China
C. pseudovishnui
1
JF706279
JF706279
Th2372
1979
Thailand
Human brain
1
D76424
U70401
VN-118
1979
Ho Chi Minh, Vietnam
C. fatigans
3
D00975
U70420
JKT7003
1981
Indonesia
Mosquito
4
L42161
U70408
JKT9092
1981
Indonesia
Mosquito
4
L42158
U70409
JKT5441
1981
Indonesia
Mosquito
2
L42164
U70406
P19-Br
1982
Chiang Mai, Thailand
Human brain
1
D76427
JEU70416
B-0860/82
1982
Thailand
Pig
1
GQ902058
GQ902058
1070/82
1982
Thailand
Human
1
GQ902059
GQ902059
JaOArS982
1982
Japan
Mosquito pool
3
M18370
M18370
YN83-Meng83-54
1983
Yunnan, China
Lasiohelea taiwana Shiraki
1
DQ404062
DQ404130
YN83-83199
1983
Yunnan, China
Culex sp.
1
DQ404063
DQ404131
PhAn 1242
1984
Santo Cristo, Philippines
Swine blood
3
D00982
U70417
B-2239
1984
Chiang Mai, Thailand
Swine blood
1
D00993
U70391
B-1381-85
1985
Thailand
Pig
1
GQ902061
GQ902061
3KP“U”CV569
1985
Thailand
Mosquito
1
GQ902060
GQ902060
4790-85
1985
Thailand
Human
1
GQ902062
GQ902062
YN85-L86-99
1985
Yunnan, China
Culex sp.
1
DQ404064
DQ404132
Naha Meat 54
1985
Okinawa, Japan
Swine blood
3
D85958
DQ355367*
YN86-B8639
1986
Yunnan, China
C. tritaeniorhynchus
1
DQ404065
DQ404133
YN86-86266
1986
Yunnan, China
NA
1
DQ404066
DQ404134
ThCMAr4492
1992
Chiang Mai, Thailand
mosquito
1
D45360
D45362
ThCMAr6793
1993
Chiang Mai, Thailand
C. tritaeniorhynchus
1
D45361
D45363
LaVS56
1993
Vientiane, Lao PDR
Swine serum
1
GQ850124*
GU815346*
LaVS145
1993
Vientiane, Lao PDR
Swine serum
1
GQ850123*
GU815345*
K94P05
1994
Korea
C. tritaeniorhynchus
1
AF045551
AF045551
Ishikawa
1997
Ishikawa, Japan
Swine mononuclear cell
1
AB051292
AB051292
Okinawa/1
1998
Okinawa, Japan
Wild boar
1
NA
AB306941
KV1899
1999
Korea
NA
1
AY316157
AY316157
TS00
2000
Australia
Swine serum
1
AF289814
EF434785
SH-53
2001
Shanghai, China
C. tritaeniorhynchus
1
AY555746
AY555757
VN88
2001
Vietnam
Swine blood
1
NA
AY376464
LN02-102
2002
Liaoning, China
C. modestus
1
DQ404018
DQ404085
Oki 431S
2002
Okinawa, Japan
Swine serum
1
DQ355361
DQ355369*
MIE-41
2002
Mie, Japan
Swine serum
1
NA
AB112709
SIZUOKA-39
2002
Shizuoka, Japan
Swine serum
1
NA
AB112704
KAGAWA-27
2002
Kagawa, Japan
Swine serum
1
NA
AB112707
Oki 128S
2003
Okinawa, Japan
Swine serum
1
DQ355362
DQ355368*
Oki 568S
2003
Okinawa, Japan
Swine serum
1
DQ355363
DQ355370*
Oki 585S
2003
Okinawa, Japan
Swine serum
1
DQ355364
DQ355371*
Oki 589S
2003
Okinawa, Japan
Swine serum
1
DQ355365
DQ355372*
JE-NP-R7
2003
Thailand
Swine blood
1
DQ084216
DQ084228
JE-CP-49
2004
Chumphon, Thailand
Swine blood
1
DQ084223
DQ087974
JE-CP-51
2004
Chumphon, Thailand
Swine blood
1
DQ084225
DQ087973
JE-CP-67
2004
Chumphon, Thailand
Swine blood
1
DQ084222
DQ087972
JE-KK-R87
2004
Khon Kaen, Thailand
Swine blood
1
DQ084218
DQ111788
JE-KK-R88
2004
Khon Kaen, Thailand
Swine blood
1
DQ084219
DQ111786
LA-H06-05
2005
Vietnam
mosquitoes
1
NA
FJ185153
LA.M-2.3
2005
Vietnam
C. pseudovishnui
1
NA
JN574432
JE-CM-1196
2005
Chiang Mai, Thailand
Swine
1
DQ356483
DQ238602
JE-KK-580
2005
Khon Kaen, Thailand
Swine
1
DQ356481
DQ238600
JE-KK-1116
2005
Khon Kaen, Thailand
Swine
1
DQ388999
DQ343290
VNHT/07/2006
2006
Ha Tai, Vietnam
C. tritaeniorhynchus
1
NA
AB728498
JaNAr17-07
2007
Nagasaki, Japan
mosquitoes
1
NA
FJ185149
GSBY0861
2008
Gansu, China
C. tritaeniorhynchus
1
JN381833
JN381833
09P141
2009
Oita, Japan
Swine
1
NA
GU108335
YN0967
2009
Yunnan, China
C. tritaeniorhynchus
1
JF706268
JF706268
JEV/CNS769
2009
Vientiane, Laos
Human brain
1
KC196115
KC196115
NA: not available,*sequenced in this study.


## 2.5. Nucleic Acid Sequence Analysis

Details of all the JEV strains used in the phylogenetic analysis are listed in Table1. Multiple alignments and the phylogenetic analysis were performed by the neighbor-joining (NJ) method using Clustal-X [35]. The bootstrap probabilities of each node were calculated using 1000 replicates. All of the phylogenetic trees were drawn using the NJplot program [36]. For phylogeographic analysis, a map JEV G1 was drawn with published data based on sequences of the E protein, except for Malaysian isolates for the C/PrM region [37].


## 2.6. Serologic Test

For serological analysis of human sera from acute encephalitis cases, six JEV strains (Nakayama, Beijing-1, JaGAr#01, P19-Br, LaVS56, and LaVS145), four prototype strains of dengue virus type 1 (Hawaiian), 2 (New Guinea B), 3 (H-87), and 4 (H-241), and a strain of WNV (Eg-101) were used for fifty percent focus-reduction neutralization tests, as described previously [15].For the antigenic analysis using mouse antisera, cross-neutralization tests against Nakayama, Beijing-1, JaGAr#01, P19-Br, LaVS56, and LaVS145 were conducted.For the seroepidemiological analysis using sera obtained from children, neutralization tests against Nakayama, Beijing-1, and LaVS145 were employed. Sera positive for neutralizing antibodies against any of the three strains were used for the comparison of neutralization reactivity. Neutralizing antibody titers against three strains were plotted in correlation graphs. Pearson’s correlation coefficient was used for paired values. A statistical analysis of Pearson’s correlation coefficient was conducted using thet-test.


## 3. Results

### 3.1. Phylogenetic Analysis

Two strains of virus, LaVS56 and LaVS145, were recovered from serum samples of slaughtered swine collected on May 27 and October 4, 1993, respectively, in Vientiane, Lao PDR. Both strains were identified as belonging to genotype 1 (G1) of JEV from nucleotide sequences of the C/PrM and E gene regions (Table1 and Figure 1).Phylogenetic analysis of JEV strains, with the Murray Valley encephalitis virus strain MVE 1–51 (GenBank accession number NC-000943) as an outgroup. (a) Tree based on a 240-nucleotide sequence of the core-premembrane gene region. (b) Tree based on a 1500-nucleotide sequence of the envelope gene region. Vientiane isolates are indicated in the box, and Okinawan isolates are indicated as*. G1a subcluster and G1b subcluster of JEV genotype 1, indicated in the dot line box, according to Nitpattana and others (2008).
(a)
(b)Phylogenetic trees of C/PrM and E have similar construction, without contradiction between genotypes and clusters. Percent homologies of the two Vientiane strains are 98.3% at the nucleotide level and 98.8% at the amino acid level in C/PrM and 96.6% at the nucleotide level and 99.0% at the amino acid level in the E region. All of the 6 Okinawan G1 isolates (5 in this study and one published) created a unique Okinawan cluster based on the E region.According to Nitatpattana et al. [38], LaVS56 and LaVS145 belonged to a subcluster, G1a, corresponding to Lineage 1, the oldest lineage among G1 according to a study by Gao et al. [39] (Figure 1(b)). Further analysis based on the E region revealed LaVS145 to be closely related to strain LA.M-2.3, isolated in Vietnam in 2005, to TS00, isolated in Northern Australia in 2000, and to Thai strains, isolated between 1982 and 1985. LaVS56 was also closely related to Thai isolates from 2004 and 2005. LaVS56 and LaVS145 belonged to different genetic groups within G1a. The G1b subcluster, by contrast, comprised isolates from East and Southeast Asia [28], including a recent Lao strain from 2009, and Okinawan G1 strains.The distribution of subclusters of G1, namely, G1a and G1b, is shown in Figure2. The G1 strains between 1967 and 1990 were distributed in a limited area on the Indochinese peninsula, but since then, G1a and G1b have been introduced into geographically distinct regions. Before 1990, G1a was distributed from Yunnan, China, to Northern Thailand and Cambodia, while G1b was recognized only in Yunnan. During the 1990s, the distribution of each cluster expanded, with G1a spreading into Lao PDR, Malaysia, and Australia, while G1b spread into Thailand and to the east into ROK and Japan, including Okinawa. The situation of G1 during the 1990s in inland and coastal China remained unknown. After 2000, G1a was found limited in Northeast and Southern Thailand and Vietnam, while G1b was isolated from widespread Asian regions, such as Vietnam, Northeast Thailand, Lao PDR, Northern India, Yunnan, Tibet, inland and coastal China, ROK, Taiwan, and Japan including Okinawa [15–17, 28, 38–44].The distribution of subclusters of genotype 1 JEV in each time period, 1967–1990, 1991–2000, and 2001–. The blue dots represent G1a and red dots G1b represent isolates analyzed in this study and published strains. The lower right panel shows an altitude map with the East Asian-Australasian flyways of migration cited fromhttp://www.ozcoasts.gov.au/indicators/shorebird_counts.jsp and estimated migration routes of G1a and G1b.
(a)
(b)
(c)
(d)This map probably indicates that the Australian G1 isolate, G1a, in 2000 originated from Southeast Asia, such as from Cambodia, Yunnan, Thailand, Lao PDR, and Malaysia through the Sunda Islands, and not from East Asia, such as China and Japan through Okinawa, Taiwan, and the Philippines, where G1a strains had not been isolated. This map supports the hypothesis that Indochina, the southernmost Asian region, was the source of JEV transmission to the Asian countries for both G1a and G1b [39].


### 3.2. Antigenic Characterization of Two Vientiane Isolates

Both of the Vientiane isolates in 1993 were antigenically characterized by cross-neutralization testing using antisera against 5 JEV strains: two strains representative of established antigenic subtypes, namely, Nakayama (prototype, vaccine and laboratory strain, G3) and Beijing-1 (vaccine and laboratory strain, G3), a previously characterized strain: P19-Br (Chiang Mai isolate, G1) [31, 45], and two Vientiane isolates: LaVS56 and LaVS145 (Figure 3(a)). Nakayama and Beijing-1 were antigenically distinguishable from each other. The Nakayama and Beijing-1 antisera neutralized the homologous strains, while the titers to the heterologous strains were about 10- to 1000-fold lower. The reactivity of the antisera against P19-Br, LaVS56, and LaVS145 behaved in a similar way, indicating that both Vientiane strains belong to the same antigenic group as P19-Br, as previously described for the ThCAr6793 subtype by Ali and Igarashi [31]. Namely, these sera of the P19-Br group neutralized Nakayama, Beijing-1, JaGAr#01 (the same antigenic group as Beijing-1), P19-Br, LaVS56, and LaVS145 as homologous strains, suggesting the presence of a broader cross-neutralizing epitope in the antigenic domain.(a) Cross-neutralization testing on 6 JEV strains using polyclonal mouse antisera inoculated with different JEV strains: Nakayama, Beijing-1, P19-Br, LaVS56, and LaVS145. Vertical line: neutralizing antibody titers against JEV strains: Nakayama (Nak), Beijing-1 (BJ), JaGAr#01 (JaG), P19-Br (P19), LaVS56 (L56), and LaVS145 (L145) in a log10 scale. (b) The reactivity of sera from JE patients of different regions: two cases of JE (A: acute sera, C: convalescent sera) from Vientiane, Lao PDR, in 1994; eight cases from Chiang Mai, Thailand, in 1991; and two cases from Okinawa, Japan, in 1991. Vertical line: neutralizing antibody titers against JEV strains as panel (a).
(a)
(b)


### 3.3. Serologic Characteristics of JE Patients in Three Regions

Forty-five cases clinically diagnosed as viral encephalitis were admitted to the largest two hospitals, Mahosot and Sethathirath Hospitals, in Vientiane, Lao PDR in 1994. Among them, two patients, code numbers 25 and 37, were serologically diagnosed with JE, and another two patients were diagnosed with dengue encephalopathy by neutralization tests and IgM-captured ELISA for JE and dengue (data not shown). A total of 41 cases had an unknown etiology. This result together with previous seroepidemiological data [20–22] suggests that Lao PDR was a JE-endemic country early in the 1990s. Interestingly, the sera of both JE patients showed a significant increase of more than 4-fold between acute and convalescent sera in terms of the neutralizing antibody titers against Beijing-1 (vaccine strain, G3), JaGAr#01 (laboratory strain, G3), and Nakayama (vaccine strain, G3), but not against P19-Br (G1, Chiang Mai, Thailand), LaVS145 (G1, Vientiane, Lao PDR), or LaVS56 (G1, Vientiane, Lao PDR) (Figure 3(b)). In addition, convalescent-phase sera from eight JE patients in Chiang Mai, Thailand, in 1991 and two JE patients in Okinawa, Japan, in 1991 showed unique neutralization patterns in each area (Figure 3(b)). The serum samples from Chiang Mai reacted with the Chiang Mai, Vientiane, and laboratory strains. The samples from Okinawa had similar neutralization patterns to those from Vientiane and the antisera for Beijing-1 that rarely reacted with Vientiane and Chiang Mai strains. On the other hand, the samples from Chiang Mai had similar patterns to the antisera for P19-Br, LaVS56, and LaVS145. JE patients in Vientiane seemed to be infected with the Beijing-1 serogroup, not the P19-Br serogroup.


### 3.4. Neutralization Reactivity in Healthy Children in Vientiane

Since vaccination programs in Lao PDR did not include the JE vaccine in 1990s, the presence of the JE antibody in children may reflect the natural transmission of JEV. Among 278 serum samples taken from children under 13 years old in Vientiane in 1994, 38 had antibodies against any of the 3 JEV strains, Nakayama, Beijing-1, and LaVS145 (Figure4). The samples tended to be divided into two groups: those that neutralized Nakayama or Beijing-1 strongly and those that neutralized LaVS145 strongly. The coefficients of the relationships between Beijing-1 and LaVS145 and between Nakayama and LaVS145 were low and not significant (P
>
0.1).Figure 4
Correlation graphs of neutralizing antibody titers against three strains of Japanese encephalitis virus in children in Vientiane in 1994, between JEV strains. Thex- and y-axes show neutralization titers against each strain. The correlation coefficient is described as an r value. The result of a t-test for each correlation coefficient is shown as a P value.


## 3.1. Phylogenetic Analysis

Two strains of virus, LaVS56 and LaVS145, were recovered from serum samples of slaughtered swine collected on May 27 and October 4, 1993, respectively, in Vientiane, Lao PDR. Both strains were identified as belonging to genotype 1 (G1) of JEV from nucleotide sequences of the C/PrM and E gene regions (Table1 and Figure 1).Phylogenetic analysis of JEV strains, with the Murray Valley encephalitis virus strain MVE 1–51 (GenBank accession number NC-000943) as an outgroup. (a) Tree based on a 240-nucleotide sequence of the core-premembrane gene region. (b) Tree based on a 1500-nucleotide sequence of the envelope gene region. Vientiane isolates are indicated in the box, and Okinawan isolates are indicated as*. G1a subcluster and G1b subcluster of JEV genotype 1, indicated in the dot line box, according to Nitpattana and others (2008).
(a)
(b)Phylogenetic trees of C/PrM and E have similar construction, without contradiction between genotypes and clusters. Percent homologies of the two Vientiane strains are 98.3% at the nucleotide level and 98.8% at the amino acid level in C/PrM and 96.6% at the nucleotide level and 99.0% at the amino acid level in the E region. All of the 6 Okinawan G1 isolates (5 in this study and one published) created a unique Okinawan cluster based on the E region.According to Nitatpattana et al. [38], LaVS56 and LaVS145 belonged to a subcluster, G1a, corresponding to Lineage 1, the oldest lineage among G1 according to a study by Gao et al. [39] (Figure 1(b)). Further analysis based on the E region revealed LaVS145 to be closely related to strain LA.M-2.3, isolated in Vietnam in 2005, to TS00, isolated in Northern Australia in 2000, and to Thai strains, isolated between 1982 and 1985. LaVS56 was also closely related to Thai isolates from 2004 and 2005. LaVS56 and LaVS145 belonged to different genetic groups within G1a. The G1b subcluster, by contrast, comprised isolates from East and Southeast Asia [28], including a recent Lao strain from 2009, and Okinawan G1 strains.The distribution of subclusters of G1, namely, G1a and G1b, is shown in Figure2. The G1 strains between 1967 and 1990 were distributed in a limited area on the Indochinese peninsula, but since then, G1a and G1b have been introduced into geographically distinct regions. Before 1990, G1a was distributed from Yunnan, China, to Northern Thailand and Cambodia, while G1b was recognized only in Yunnan. During the 1990s, the distribution of each cluster expanded, with G1a spreading into Lao PDR, Malaysia, and Australia, while G1b spread into Thailand and to the east into ROK and Japan, including Okinawa. The situation of G1 during the 1990s in inland and coastal China remained unknown. After 2000, G1a was found limited in Northeast and Southern Thailand and Vietnam, while G1b was isolated from widespread Asian regions, such as Vietnam, Northeast Thailand, Lao PDR, Northern India, Yunnan, Tibet, inland and coastal China, ROK, Taiwan, and Japan including Okinawa [15–17, 28, 38–44].The distribution of subclusters of genotype 1 JEV in each time period, 1967–1990, 1991–2000, and 2001–. The blue dots represent G1a and red dots G1b represent isolates analyzed in this study and published strains. The lower right panel shows an altitude map with the East Asian-Australasian flyways of migration cited fromhttp://www.ozcoasts.gov.au/indicators/shorebird_counts.jsp and estimated migration routes of G1a and G1b.
(a)
(b)
(c)
(d)This map probably indicates that the Australian G1 isolate, G1a, in 2000 originated from Southeast Asia, such as from Cambodia, Yunnan, Thailand, Lao PDR, and Malaysia through the Sunda Islands, and not from East Asia, such as China and Japan through Okinawa, Taiwan, and the Philippines, where G1a strains had not been isolated. This map supports the hypothesis that Indochina, the southernmost Asian region, was the source of JEV transmission to the Asian countries for both G1a and G1b [39].


## 3.2. Antigenic Characterization of Two Vientiane Isolates

Both of the Vientiane isolates in 1993 were antigenically characterized by cross-neutralization testing using antisera against 5 JEV strains: two strains representative of established antigenic subtypes, namely, Nakayama (prototype, vaccine and laboratory strain, G3) and Beijing-1 (vaccine and laboratory strain, G3), a previously characterized strain: P19-Br (Chiang Mai isolate, G1) [31, 45], and two Vientiane isolates: LaVS56 and LaVS145 (Figure 3(a)). Nakayama and Beijing-1 were antigenically distinguishable from each other. The Nakayama and Beijing-1 antisera neutralized the homologous strains, while the titers to the heterologous strains were about 10- to 1000-fold lower. The reactivity of the antisera against P19-Br, LaVS56, and LaVS145 behaved in a similar way, indicating that both Vientiane strains belong to the same antigenic group as P19-Br, as previously described for the ThCAr6793 subtype by Ali and Igarashi [31]. Namely, these sera of the P19-Br group neutralized Nakayama, Beijing-1, JaGAr#01 (the same antigenic group as Beijing-1), P19-Br, LaVS56, and LaVS145 as homologous strains, suggesting the presence of a broader cross-neutralizing epitope in the antigenic domain.(a) Cross-neutralization testing on 6 JEV strains using polyclonal mouse antisera inoculated with different JEV strains: Nakayama, Beijing-1, P19-Br, LaVS56, and LaVS145. Vertical line: neutralizing antibody titers against JEV strains: Nakayama (Nak), Beijing-1 (BJ), JaGAr#01 (JaG), P19-Br (P19), LaVS56 (L56), and LaVS145 (L145) in a log10 scale. (b) The reactivity of sera from JE patients of different regions: two cases of JE (A: acute sera, C: convalescent sera) from Vientiane, Lao PDR, in 1994; eight cases from Chiang Mai, Thailand, in 1991; and two cases from Okinawa, Japan, in 1991. Vertical line: neutralizing antibody titers against JEV strains as panel (a).
(a)
(b)


## 3.3. Serologic Characteristics of JE Patients in Three Regions

Forty-five cases clinically diagnosed as viral encephalitis were admitted to the largest two hospitals, Mahosot and Sethathirath Hospitals, in Vientiane, Lao PDR in 1994. Among them, two patients, code numbers 25 and 37, were serologically diagnosed with JE, and another two patients were diagnosed with dengue encephalopathy by neutralization tests and IgM-captured ELISA for JE and dengue (data not shown). A total of 41 cases had an unknown etiology. This result together with previous seroepidemiological data [20–22] suggests that Lao PDR was a JE-endemic country early in the 1990s. Interestingly, the sera of both JE patients showed a significant increase of more than 4-fold between acute and convalescent sera in terms of the neutralizing antibody titers against Beijing-1 (vaccine strain, G3), JaGAr#01 (laboratory strain, G3), and Nakayama (vaccine strain, G3), but not against P19-Br (G1, Chiang Mai, Thailand), LaVS145 (G1, Vientiane, Lao PDR), or LaVS56 (G1, Vientiane, Lao PDR) (Figure 3(b)). In addition, convalescent-phase sera from eight JE patients in Chiang Mai, Thailand, in 1991 and two JE patients in Okinawa, Japan, in 1991 showed unique neutralization patterns in each area (Figure 3(b)). The serum samples from Chiang Mai reacted with the Chiang Mai, Vientiane, and laboratory strains. The samples from Okinawa had similar neutralization patterns to those from Vientiane and the antisera for Beijing-1 that rarely reacted with Vientiane and Chiang Mai strains. On the other hand, the samples from Chiang Mai had similar patterns to the antisera for P19-Br, LaVS56, and LaVS145. JE patients in Vientiane seemed to be infected with the Beijing-1 serogroup, not the P19-Br serogroup.


## 3.4. Neutralization Reactivity in Healthy Children in Vientiane

Since vaccination programs in Lao PDR did not include the JE vaccine in 1990s, the presence of the JE antibody in children may reflect the natural transmission of JEV. Among 278 serum samples taken from children under 13 years old in Vientiane in 1994, 38 had antibodies against any of the 3 JEV strains, Nakayama, Beijing-1, and LaVS145 (Figure4). The samples tended to be divided into two groups: those that neutralized Nakayama or Beijing-1 strongly and those that neutralized LaVS145 strongly. The coefficients of the relationships between Beijing-1 and LaVS145 and between Nakayama and LaVS145 were low and not significant (P
>
0.1).Figure 4
Correlation graphs of neutralizing antibody titers against three strains of Japanese encephalitis virus in children in Vientiane in 1994, between JEV strains. Thex- and y-axes show neutralization titers against each strain. The correlation coefficient is described as an r value. The result of a t-test for each correlation coefficient is shown as a P value.


## 4. Discussion

To our knowledge, this is the report on the earliest JEV isolates from Vientiane in Lao PDR. Phylogeographic analysis of JEV G1 strains including Vientiane and Okinawan strain elucidated different clusters, G1a and G1b, with distinct distribution, evidenced that there are different mechanisms and routes to spread JEV G1 into new area, and proposed that the Australian G1a isolate originated from Thailand and Lao PDR region, Southeast Asia, but not from East Asia though Okinawa, Taiwan, probably through Philippines. The recent expansion of G1 in Asian countries has mainly involved G1b. Our data also support the view of Gao et al. [39] that Indochina, the southernmost Asian region, was the source of JEV transmission to the Asian countries.Although both distributions correlate with East Asian-Australasian flyways of migratory birds [13, 39, 46, 47], the direction of spreading clusters is different; G1a is from north to south, while G1b is from west to east. Mackenzie et al. [48] hypothesized that JEV reached Australasia by island hopping across the eastern Indonesia archipelago by birds, particularly ardeid birds, establishing the bird-mosquito and pig-mosquito transmission cycles on each island as it moved. Ritchie and Rochester [49] calculated mosquitoes that could carry virus from PNG to islands in northern Australia during cyclonic weather patterns. On the other hand, Nabeshima et al. [28] and Morita [50] suggested that jet wind and westerly wind carrying small insects might be involved in G1 spread to East Asia beside migratory birds. Further study on the present situation of JEV in Indonesia and the Philippines will give us the clear map for the routes of expansion.It was also believed that JEV was carried northward to and within Japan [51], since yearly seasonal activity of JEV had been started from Okinawa as southern-most area of Japan. The recent appearance of G1b in Taiwan has been about 600 km southwest from Okinawa Island, approximately 10 years after its first appearance in China, ROK, and Japan [40]. The Taiwanese G1 strains are related to strains in coastal China more than to those in Japan. Phylogenetic analysis suggested that JEV has been introduced into Okinawa from the north, such as ROK and other parts of Japan, and a serosurvey of migratory birds in Okinawa [52] suggests that it has been possibly carried by winter visitors.The antigenic and genetic variation of JEV has been studied extensively. Nakayama and Beijing-1, both belonging to the G3 subgroup, are known to differ in antigenicity [4]. Antigenic variation was also reported within G1. The two Vientiane strains were of the same antigenic serogroup as P19-Br and ThCMAr6793, according to Ali and Igarashi [31], most commonly observed in G1 by cross-neutralization testing, characterized by antisera that neutralize a wide range of JEV strains including members of not only homologous antigenic groups but also distinct antigenic groups, while antisera of Nakayama and Beijing-1 neutralize specifically homologous serogroups. The immune status of G3 in humans and pigs might have exerted pressure for genotype shift because of this difference.Interestingly, sera from JE patients in Vientiane showed Beijing-1-type seroreactivity, similar to the antiserum of Beijing-1 and JE patients in Okinawa, Japan, in 1991, but different from the antisera for LaVS56, LaVS145, and P19-Br, and JE patients in Chiang Mai, Thailand, exhibited P19-Br-type seroreactivity. Only G3 had been isolated in Okinawa until 1992. These results indicate that the patients in Vientiane were infected by the Beijing-1 serogroup. Therefore, there were at least two different antigenic groups, Beijing-1-type and P19-Br-type, of JEV in Vientiane. Furthermore, the seroepidemiological study of healthy children in Vientiane strengthened the notion that there was a distinct antigenic group of JEV.As no JEV G1 strains were reported to belong to the Beijing-1 serogroup, G1 and G3 may have coexisted in Vientiane in the early 1990s. In addition, the Vientiane strains, LaVS56 and LaVS145, belong to genetically different subgroups of the same G1a cluster. It is evident that antigenically and genetically diverse forms of JEV cocirculated in a limited area and over a limited period of time. In addition, many live pigs were imported for food into Lao PDR from Vietnam in those days, where G3 had been the major genotype. This might be the possible route and mechanism of expansion.It is strongly suggested that report of JE cases was underestimated because of absence of good surveillance and accurate laboratory diagnosis [4, 26]. In this study period of the early 1990s, no epidemic outbreak of JE was observed, and many suspected viral encephalitis cases were with unknown etiology in Lao PDR. This together with seroepidemiological studies [20–22] revealed an endemic but not epidemic status of JE in Lao PDR. The reason why JE epidemic did not occur in Vientiane is unknown, although serologic study in swine showed that JEV activity was not very high, which might suggest low density of vector mosquitoes there [21]. Coexistence of diverse form of JEV might be enabled by very local transmission cycle as a result of this situation.At present, no specific treatment is available for JE. Work on the production of vaccines using Nakayama, Beijing-1, and SA14-14-2, all members of G3, is ongoing. Although epidemiological evidence of the efficiency of JE vaccine was well reported [53, 54], given the recent expansion of G1 in Asia, careful assessments of the efficiency, safety, and validity of ongoing vaccines using G3 strains including SA14-14-2 used in Lao PDR are continuously needed. As JE is easily influenced by environmental and socioeconomic changes, risk assessments from multilateral approaches not only in Asia and Oceania but also Europe and America are required to control the disease.


## 5. Conclusion

Japanese encephalitis remains still one of the public health threats in Asia including Lao PDR. In this study, the subclusters of G1, G1a and G1b, with their own distinct distributions indicate the involvement of different mechanisms and routes of spread and propose that the Australian G1a originated from Southeast Asia through Sunda Island, not from East Asia. Our study also supports the hypothesis that Indochina was the source of JEV transmission to the Asian countries for the both G1a and G1b. In addition, the results together with antigenic and seroepidemiological studies strongly suggest that diverse antigenicity of JEV cocirculated, with endemic pattern in Lao PDR, 1990s.



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