# Synthesis, Crystal Structure, and Antimicrobial Properties of a Novel 1-D Cobalt Coordination Polymer with Dicyanamide and 2-Aminopyridine

Authors: Amah Colette Benedicta Yuoh; Moise Ondoh Agwara; Divine Mbom Yufanyi; Mariam Aseng Conde; Rajamony Jagan; Kenneth Oben Eyong
Journal: International Journal of Inorganic Chemistry
 (2015)

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## Abstract

A novel one-dimensional coordination polymer bis(2-aminopyridine)-μ-bis(dicyanamido) cobaltate(II) has been synthesized and characterized by elemental analyses and infrared and ultraviolet visible spectroscopies and the structure has been determined by single crystal X-ray diffraction. Co(II) ion in the complex is coordinated to two axial 2-aminopyridine ligands through the pyridine N-atom and four equatorial dicyanamide ligands to give a CoN6 slightly distorted octahedral coordination environment around the metal ion. The amino N-atom forms intrachain hydrogen bonds. Antimicrobial screening of the complex against eight pathogenic microorganisms (four bacteria and four fungi) isolated from humans, indicates that the complex is moderately active.


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## Body

## 1. Introduction

Transition metal complexes of N-donor heterocyclic ligands are of interest due to their applications in biology, pharmacology, magnetism, and so forth [1]. Pyridine and its derivatives are known for their use in the design and synthesis of multifunctional compounds as well as their biological and pharmacological applications as anticoagulants, antihistamines, antiseptics, antiarrhythmics, and antirheumatics [2–4]. Amongst the pyridine derivatives, 2-aminopyridine (2-ampy), a potential bidentate ligand with two nitrogen donor atoms, is of great pharmacological importance because it is used in the synthesis of pharmaceuticals such as antihistamines and anti-inflammatories [5]. 2-ampy has also been shown to have a major influence on the formation of transition metal molybdates in which it acts as a buffer and forms weaker complexes with the transition metals, thus preventing their hydrolysis [6]. A survey of the reported crystal structures of 2-ampy with different metal ions indicates that 2-ampy exhibits different bonding modes: it mostly acts as a monodentate ligand through its pyridine nitrogen atom [4, 7–11], though coordination through the exocyclic amino N-atom (a less common mode) has also been reported [12, 13]. When it coordinates through the pyridine N-atom, the formation of additional H-bonds through the exocyclic amine N-atom is possible [14]. It also forms chelates with a bidentate coordination mode through the pyridine N and exocyclic amine N atoms [15]. Several mixed ligand complexes containing 2-ampy have also been synthesized with different properties and diverse applications [7, 9–12, 16–25].Dicyanamide (dca) has been used extensively as a building block in supramolecular chemistry and crystal engineering [26]. This pseudohalide shows versatility in its coordination modes; it can act as a monodentate ligand through nitrile nitrogen, as a bidentate ligand through terminal nitrile nitrogen atoms, or as a bridging ligand in varied bridging modes [26–31]. The versatile coordination ability of dca has led to the design and synthesis of several metal-dicyanamide complexes with varied topologies and magnetic properties [26, 27].The chemistry of cobalt(II) complexes with O- and N-donor ligands has been extensively studied and it was found to have diverse properties [1, 7, 20, 30, 32]. Some of the complexes have been shown to possess antitumor properties [33], as well as antimicrobial activity against resistant microbial strains [12, 34, 35].The increased resistance of microorganisms to antimicrobial agents imposes the search for alternative and more potent agents. The improved biological activity of several transition metal complexes upon coordination to different N-containing heterocyclic ligands reported has caused the design and synthesis of these complexes [33, 36].In view of the varied applications of cobalt mixed ligand complexes and exploring the good biological properties of cobalt and 2-ampy as well as the structure-directing properties of dca, we report herein the crystal structure of a novel cobalt(II) coordination polymer containing 2-ampy and dca. The biological activity of the complex towards some resistant pathogens, evaluated usingin vitro assays, is also presented.


## 2. Experimental

### 2.1. Materials and Method

All chemicals and solvents were obtained from commercial sources and used as received.


### 2.2. Synthesis of the Complex

10 mL ethanol/water (1 : 1) solution of sodium dicyanamide and NaC2N3 (0.36 g; 4 mmol) were added dropwise to a stirred ethanolic solution (10 mL) of cobalt nitrate hexahydrate and Co(NO3)2·6H2O (0.59 g; 2 mmol) at room temperature. The resulting pink mixture was stirred for 30 min after which an ethanolic solution (10 mL) of 2-aminopyridine (0.77 g; 8 mmol) was added dropwise. The resulting mixture was further stirred for 1 h after which a pink precipitate was afforded. The precipitate was filtered, washed with distilled water, air-dried, and weighed (yield 53%). The filtrate was allowed to evaporate at room temperature and pink crystals were obtained. [Co(2-ampy)2(dca)2]: yield: 53%. Pink, m.p.: 246°C. ElementAnal. Calc. for CoC14H14N10: C, 44.10; H, 3.70; N, 36.74. Found: C, 44.00; H, 3.68; N, 36.84. FTIR (cm−1): 3478 (νN-H), 2241 and 1489 (νC≡N), 1329 (νCN), and 434 and 560 (νM-N).


### 2.3. Characterization Techniques

The melting point temperature was recorded using the Leica VMHB Kofler system. Conductivity measurement was carried out in distilled water using a CD810 Tacussel Electronic Conductometer at room temperature. Elemental analysis (C, H, N) was carried out on a Flash 2000 Thermo Scientific analyzer. The infrared spectrum was recorded using a Bruker ALPHA-P spectrophotometer directly on a small sample of the complex in the range 400–4000 cm−1 while the UV-visible spectrum of an ethanolic solution of the complex was recorded using a Bruker HACH DR 3900 UV-Visible spectrophotometer at room temperature.


### 2.4. Single Crystal X-Ray Structure Determination

Intensity data for the compound was collected using a Bruker AXS Kappa APEX II single crystal CCD Diffractometer, equipped with graphite-monochromated MoKα radiation (λ=0.71073 Å) at room temperature. The selected crystal for the diffraction experiment had a dimension of 0.25 × 0.25 × 0.2 mm3. Accurate unit cell parameters were determined from the reflections of 36 frames measured in three different crystallographic zones by the method of difference vectors. The data collection, data reduction, and absorption correction were performed by APEX2, SAINT-Plus, and SADABS programs [37]. The structure was solved by direct methods procedure using SHELXS-97 program [38] and the nonhydrogen atoms were subjected to anisotropic refinement by full-matrix least squares on F2 using SHELXL-97 program [38]. The positions of all the hydrogen atoms were identified from difference electron density map and were fixed accordingly. All the aromatic hydrogen atoms were constrained to ride on the corresponding nonhydrogen atoms with a distance of C-H = 0.93 Å and Uiso(H) = 1.2Ueq(C) whereas the hydrogen atoms associated with all the N atoms were restrained to a distance of N-H = 0.88(2) Å.


### 2.5. Antimicrobial Tests

The antimicrobial tests were carried out in the laboratory of Phytobiochemical and Medicinal Plant Study, University of Yaoundé I. The tests were done on eight pathogenic microorganisms, 4 yeasts,Candida albicans ATCC P37039,Candida albicans 194B,Candida glabrata 44B, andCryptococcus neoformans and 4 bacterial strains, Gram-positiveStaphylococcus aureus CIP 7625 and Gram-negatives,Pseudomonas aeruginosa CIP 76110,Salmonella typhi, andEscherichia coli ATCC 25922 obtained from Centre Pasteur, Yaoundé, Cameroon. Reference antibacterial drug chloramphenicol and antifungal drug nystatin were evaluated for their antibacterial and antifungal activities and their results were compared with those of the free ligands and the complex.The disk diffusion method, using Muller Hinton Agar, from the protocol described by the National Committee for Clinical Laboratory Standard (NCCLS, 2004) was used for preliminary screening.Mueller-Hinton agar was prepared from a commercially available dehydrated base according to the manufacturer’s instructions. Several colonies of each microorganism were collected and suspended in saline (0.9% NaCl). Then, the turbidity of the test suspension was standardized to match that of a 0.5 McFarland standard (corresponds to approximately 1.5 × 108 CFU/mL for bacteria or 1 × 106 to 5 × 106 cells/mL for yeast). Each compound or reference was accurately weighed and dissolved in the appropriate diluents (DMSO at 10%, methanol at 10%, or distilled water) to yield the required concentration (2 mg/mL for compound or 1 mg/mL for reference drug), using sterile glassware.Whatman filter paper number 1 was used to prepare disks approximately 6 mm in diameter, which were packed up with aluminum paper and sterilized by autoclaving. Then, 25μL of stock solutions of compound or positive control were delivered to each disk, leading to 50 μg of compound or 25 μg of reference drug.The dried surface of a Müller-Hinton agar plate was inoculated by flooding over the entire sterile agar surface with 500μL of inoculum suspensions. The lid was left ajar for 3 to 5 minutes to allow for any excess surface moisture to be absorbed before applying the drug impregnated disks. Disks containing the compounds or antimicrobial agents were applied within 15 minutes of inoculating the MHA plate. Six disks per petri dish were plated. The plates were inverted and placed in an incubator set to 35°C. After 18 hours (for bacteria) and 24 hours (for yeasts) of incubation, each plate was examined. The diameters of the zones of complete inhibition (as judged by the unaided eye) were measured, including the diameter of the disk. Zones were measured to the nearest whole millimeter, using sliding calipers, which were held on the back of the inverted petri plate. All experiments were carried out in duplicate. The compound was considered active against a microbe if the inhibition zone was 6 mm and above.


## 2.1. Materials and Method

All chemicals and solvents were obtained from commercial sources and used as received.


## 2.2. Synthesis of the Complex

10 mL ethanol/water (1 : 1) solution of sodium dicyanamide and NaC2N3 (0.36 g; 4 mmol) were added dropwise to a stirred ethanolic solution (10 mL) of cobalt nitrate hexahydrate and Co(NO3)2·6H2O (0.59 g; 2 mmol) at room temperature. The resulting pink mixture was stirred for 30 min after which an ethanolic solution (10 mL) of 2-aminopyridine (0.77 g; 8 mmol) was added dropwise. The resulting mixture was further stirred for 1 h after which a pink precipitate was afforded. The precipitate was filtered, washed with distilled water, air-dried, and weighed (yield 53%). The filtrate was allowed to evaporate at room temperature and pink crystals were obtained. [Co(2-ampy)2(dca)2]: yield: 53%. Pink, m.p.: 246°C. ElementAnal. Calc. for CoC14H14N10: C, 44.10; H, 3.70; N, 36.74. Found: C, 44.00; H, 3.68; N, 36.84. FTIR (cm−1): 3478 (νN-H), 2241 and 1489 (νC≡N), 1329 (νCN), and 434 and 560 (νM-N).


## 2.3. Characterization Techniques

The melting point temperature was recorded using the Leica VMHB Kofler system. Conductivity measurement was carried out in distilled water using a CD810 Tacussel Electronic Conductometer at room temperature. Elemental analysis (C, H, N) was carried out on a Flash 2000 Thermo Scientific analyzer. The infrared spectrum was recorded using a Bruker ALPHA-P spectrophotometer directly on a small sample of the complex in the range 400–4000 cm−1 while the UV-visible spectrum of an ethanolic solution of the complex was recorded using a Bruker HACH DR 3900 UV-Visible spectrophotometer at room temperature.


## 2.4. Single Crystal X-Ray Structure Determination

Intensity data for the compound was collected using a Bruker AXS Kappa APEX II single crystal CCD Diffractometer, equipped with graphite-monochromated MoKα radiation (λ=0.71073 Å) at room temperature. The selected crystal for the diffraction experiment had a dimension of 0.25 × 0.25 × 0.2 mm3. Accurate unit cell parameters were determined from the reflections of 36 frames measured in three different crystallographic zones by the method of difference vectors. The data collection, data reduction, and absorption correction were performed by APEX2, SAINT-Plus, and SADABS programs [37]. The structure was solved by direct methods procedure using SHELXS-97 program [38] and the nonhydrogen atoms were subjected to anisotropic refinement by full-matrix least squares on F2 using SHELXL-97 program [38]. The positions of all the hydrogen atoms were identified from difference electron density map and were fixed accordingly. All the aromatic hydrogen atoms were constrained to ride on the corresponding nonhydrogen atoms with a distance of C-H = 0.93 Å and Uiso(H) = 1.2Ueq(C) whereas the hydrogen atoms associated with all the N atoms were restrained to a distance of N-H = 0.88(2) Å.


## 2.5. Antimicrobial Tests

The antimicrobial tests were carried out in the laboratory of Phytobiochemical and Medicinal Plant Study, University of Yaoundé I. The tests were done on eight pathogenic microorganisms, 4 yeasts,Candida albicans ATCC P37039,Candida albicans 194B,Candida glabrata 44B, andCryptococcus neoformans and 4 bacterial strains, Gram-positiveStaphylococcus aureus CIP 7625 and Gram-negatives,Pseudomonas aeruginosa CIP 76110,Salmonella typhi, andEscherichia coli ATCC 25922 obtained from Centre Pasteur, Yaoundé, Cameroon. Reference antibacterial drug chloramphenicol and antifungal drug nystatin were evaluated for their antibacterial and antifungal activities and their results were compared with those of the free ligands and the complex.The disk diffusion method, using Muller Hinton Agar, from the protocol described by the National Committee for Clinical Laboratory Standard (NCCLS, 2004) was used for preliminary screening.Mueller-Hinton agar was prepared from a commercially available dehydrated base according to the manufacturer’s instructions. Several colonies of each microorganism were collected and suspended in saline (0.9% NaCl). Then, the turbidity of the test suspension was standardized to match that of a 0.5 McFarland standard (corresponds to approximately 1.5 × 108 CFU/mL for bacteria or 1 × 106 to 5 × 106 cells/mL for yeast). Each compound or reference was accurately weighed and dissolved in the appropriate diluents (DMSO at 10%, methanol at 10%, or distilled water) to yield the required concentration (2 mg/mL for compound or 1 mg/mL for reference drug), using sterile glassware.Whatman filter paper number 1 was used to prepare disks approximately 6 mm in diameter, which were packed up with aluminum paper and sterilized by autoclaving. Then, 25μL of stock solutions of compound or positive control were delivered to each disk, leading to 50 μg of compound or 25 μg of reference drug.The dried surface of a Müller-Hinton agar plate was inoculated by flooding over the entire sterile agar surface with 500μL of inoculum suspensions. The lid was left ajar for 3 to 5 minutes to allow for any excess surface moisture to be absorbed before applying the drug impregnated disks. Disks containing the compounds or antimicrobial agents were applied within 15 minutes of inoculating the MHA plate. Six disks per petri dish were plated. The plates were inverted and placed in an incubator set to 35°C. After 18 hours (for bacteria) and 24 hours (for yeasts) of incubation, each plate was examined. The diameters of the zones of complete inhibition (as judged by the unaided eye) were measured, including the diameter of the disk. Zones were measured to the nearest whole millimeter, using sliding calipers, which were held on the back of the inverted petri plate. All experiments were carried out in duplicate. The compound was considered active against a microbe if the inhibition zone was 6 mm and above.


## 3. Results and Discussion

### 3.1. Synthesis of the Complex

The title complex is pink and air stable with a sharp melting point (246°C) indicating its purity. The molar conductivity value of the complex is 67.5 Ωcm−2 mol−1 in water, indicating that it is a nonelectrolyte.


### 3.2. X-Ray Crystal Structure

The ORTEP view of the crystal structure of bis(2-aminopyridine)-μ-bis(dicyanamido) cobaltate(II), [Co(2-ampy)2(dca)2] together with the atom numbering scheme used in the corresponding tables is shown in Figure 1. The crystal packing diagram for [Co(2-ampy)2(dca)2] seen along the crystallographic a-axes is shown in Figure 2 and the 1-D polymeric chain structure of the complex is shown in Figure 3. The crystal data is presented in Table 1, while the selected bond lengths and bond angles are shown in Table 2.Table 1
Crystal data and structure refinement for [Co(2-ampy)2(dca)2].
Empirical formula
C14H14CoN10
Formula weight
381.28
Temperature
293(2) K
Wavelength
0.71073 Å
Crystal system
Monoclinic
Space group
P21/c
Unit cell dimensions
a = 7.4488(4) Å
b = 14.8145(8) Å
c = 7.3934(4) Å
α = 90°
β = 102.016(3)°
γ = 90°
Volume
797.99(7) Å3
Z
2
Density (calculated)
1.587 mg/m3
Absorption coefficient
1.097 mm−1
F(000)
390
Crystal size
0.25 × 0.25 × 0.20 mm
Theta range for data collection
2.75 to 27.47°
Limiting indices
−9 ≤h ≤ 9, −19 ≤ k ≤ 19, −9 ≤ l ≤ 9
Reflections collected/unique
14670/1813 [R(int) = 0.0543]
Completeness to theta
27.47 99.0%
Absorption correction
Semiempirical from equivalents
Max. and min. transmission
0.8105 and 0.7711
Refinement method
Full-matrix least-squares onF2
Data/restraints/parameters
1813/44/145
Goodness-of-fit onF2
1.102
FinalR indices [I > 2 sigma(I)]
R
1 = 0.0432, wR2 = 0.1142
R indices (all data)
R
1 = 0.0568, wR2 = 0.1258Table 2
Selected bond lengths [Å] and angles [°] for [Co(2-ampy)2(dca)2].
Co(1)-N(3)
2.126(2)
N(3)-Co(1)-N(3)#1
180.0
Co(1)-N(3)#1
2.126(2)
N(3)-Co(1)-N(5)
92.28(10)
Co(1)-N(5)
2.128(2)
N(3)#1-Co(1)-N(5)
87.72(10)
Co(1)-N(5)#1
2.128(2)
N(3)-Co(1)-N(5)#1
87.72(10)
Co(1)-N(1)#1
2.193(3)
N(3)#1-Co(1)-N(5)#1
92.28(10)
Co(1)-N(1)
2.193(3)
N(5)-Co(1)-N(5)#1
180.00(9)
N(1)-C(1)
1.342(4)
N(3)-Co(1)-N(1)#1
91.68(10)
N(1)-C(5)
1.350(4)
N(3)#1-Co(1)-N(1)#1
88.32(10)
N(5)-C(7)
1.134(3)
N(5)-Co(1)-N(1)#1
92.02(10)
N(2)-C(1)
1.360(4)
N(5)#1-Co(1)-N(1)#1
87.98(10)
C(5)-C(4)
1.364(5)
N(3)-Co(1)-N(1)
88.32(10)
C(3)-C(2)
1.358(6)
N(3)#1-Co(1)-N(1)
91.68(10)
C(1)-C(2)
1.391(5)
N(5)-Co(1)-N(1)
87.98(10)
C(7)-N(4)#2
1.305(15)
N(5)#1-Co(1)-N(1)
92.02(10)
C(7)-N(4′)#2
1.313(14)
N(1)#1-Co(1)-N(1)
180.00(13)
N(3)-C(6)
1.127(6)
C(1)-N(1)-C(5)
116.8(3)
N(3)-C(6′)
1.129(6)
C(1)-N(1)-Co(1)
128.3(2)
N(4)-C(7)#3
1.305(15)
C(5)-N(1)-Co(1)
114.9(2)
N(4)-C(6)
1.324(18)
C(7)-N(5)-Co(1)
157.7(2)
N(4′)-C(6′)
1.310(14)
N(1)-C(5)-C(4)
124.1(3)
N(4′)-C(7)#3
1.314(14)
N(1)-C(1)-N(2)
118.3(3)
C(3)-C(2)
1.358(6)
N(1)-C(1)-C(2)
121.9(3)
C(1)-C(2)
1.391(5)
N(2)-C(1)-C(2)
119.8(3)
C(3)-C(2)-C(1)
119.9(4)
Symmetry transformations used to generate equivalent atoms:
#1:-x, -y, -z+2; #2: x, y, z-1; #3: x, y, z+1.Figure 1
ORTEP view of the complex [Co(2-ampy)2(dca)2] together with the numbering scheme.Figure 2
Packing diagram of the complex showing hydrogen bonding scheme.Figure 3
1-D polymeric chain structure of the complex.The complex crystallizes in the monoclinic crystal system with space group P21/c. The asymmetric unit consists of one 2-ampy molecule, one dicyanamide anion, and one Co(II) ion. The crystal structure shows that Co1 adopts a slightly distorted octahedral environment (CoN6) in which it is covalently bonded to two pyridine N-atoms (Co-N1 2.193(3) Å) arranged axially and four nitrile N-atoms (Co1-N3 2.126(2) Å and Co1-N5 2.128(2) Å) from four dca anions in equatorial positions. The Co1-N1 bond length is slightly longer than that reported for other cobalt complexes wih 2-ampy [4, 7, 9, 20]. The Co1-N3 (2.126 Å) and Co1-N5 (2.128 Å) bond lengths are similar to values reported in the literature for other Co-N bonds with nitrile N [26, 30]. The dca ligand adopts a bridging coordination mode through the terminal nitrile N-atoms. In the equatorial plane, the bonding configuration of dca around the Co1 atoms is nonlinear as evidenced by the bond angles C6-N3-Co1 (164.9°) and C7-N5-Co1 (157.7°). This observation is consistent with the literature reports [30]. Each Co1 atom is linked to two Co1 atoms through two 1,5-μ2-dca bridges resulting in a 1-D polymeric chain structure (Figure 3). There are no intermolecular hydrogen bonds in the complex but only intrachain H-bonds between the exocyclic amino group and dca nitrogen atom (N2-H⋯N3) and that between N-atoms of dca (N5⋯N3) as well as short contacts. The chains are held together by these short contacts.


### 3.3. IR Spectroscopy

The relevant IR bands are summarized in Table3. In the spectrum of 2-ampy, the absorption bands at 3478 and 3287 cm−1 in the ligand assigned to νasN-H and νs(N-H), respectively, are not shifted in the complex indicating that the amino N-atom is not participating in bonding [4]. This observation is consistent with the X-ray crystal structure that shows coordination of the 2-ampy ligand only through the pyridine N-atom. The sharp vibration band at 1557 cm−1 attributed to νC=N of 2-ampy has been shifted to 1549 cm−1 in the complex, indicating its participation in bonding [7]. The spectra of the dca ligand and the complex show strong absorption bands in the 2310–2100 cm−1 region attributed to the νs+νas (C≡N), νas (C≡N), and νs (C≡N) vibrational modes of dca [27, 30]. The appearance of two new characteristic bands, 434 cm−1 and 560 cm−1 in the spectrum of the complex, which were not found in the spectra of the ligands, indicates the presence of M-N bonding between the metal and the nitrogen atoms of both 2-aminopyridine and dca. This observation is confirmed by the X-ray structure of the complex which shows that cobalt is bonded to both 2-ampy and dca through N-atoms.Table 3
Relevant IR bands of the ligands and complex.
Compounds
ν
(N-H) cm−1
ν
(C
≡
N) cm−1
ν
(C=N) cm−1
ν
(C-N) cm−1
ν
(M-N) cm−1
2-ampy
3287
/
1557
1140
/
dca
/
2226
/
1338
/
Co(2-ampy)2(dca)2
3478
2241
1489
1329
434
560


### 3.4. UV-Visible Spectroscopy

In octahedral symmetry, six-coordinate high-spin cobalt(II) exhibits three spin-allowed electronic transitions assigned as4T1g(F) → 4T2g, 4T1g(F) → 4A2g and 4T1g(F) → 4T1g(P) [27]. The UV-vis spectrum of the title compound reveals two (d-d) absorption bands at 498 nm and 642 nm which correspond to 4T1g(F) → 4T2g and 4T1g(F) → 4T1g(P) transitions, respectively [27]. This discloses octahedral geometry. The band at 427 nm is masked by the broad band at 498 nm. This observation is consistent with octahedral geometry around the Co(II) center and this is confirmed by the X-ray structure of the complex. In octahedral symmetry, six-coordinate high-spin cobalt(II) exhibits three spin-allowed electronic transitions assigned as 4T1g(F) → 4T2g, 4T1g(F) → 4A2g, and 4T1g(F) → 4T1g(P) [27].


### 3.5. Antimicrobial Tests

The potency of the metal salt, 2-aminopyridine, dca, and the complex together with the reference antibacterial drug (chloramphenicol) and antifungal drug (nystatin) was evaluated against four bacteria and four fungi strains. The results of the preliminary screening obtained are presented in Table4.Table 4
Diameter of zone of inhibition of the complex, ligands, and the metal salt.
Species
Zone of inhibition (mm)
Co(NO3)2
dca
2-ampy
Co(2-ampy)2(dca)2
Chloramphenicol
Nystatin
Fungi
C. albicans ATCC P37039
8.5
11.5
6.0
6.0
7.5
6.0
C. albicans 194B
6.0
7.5
7.0
9.0
14.5
7.0
C. glabrata 44B
7.5
14.0
6.0
8.0
6.0
6.0
C. neoformans
8.0
11.5
6.0
7.0
10.5
9.5
Bacteria
E. coli
7.0
9.0
8.0
6.0
12.0
6.0
P. aeruginosa
11.5
6.0
6.0
8.5
11.5
6.0
S. typhi
11.0
6.0
8.0
8.5
10.0
6.0
S. aureus
10.0
6.0
6.0
6.0
14.0
10.5The results indicate that dca exhibits the highest activity against the pathogens, especially against the fungi species, followed by the metal salt with a generally high activity against the pathogens. The ligand 2-aminopyridine shows a relatively low activity against both fungi and bacteria species. The metal complex shows moderate activity compared to that of the free ligands. The complex is most active against the fungiC. albicans 194B,C. glabrata 44B and the bacteria speciesP. aeruginosa andS. typhi. The activity of the complex towards the microorganisms decreases in the orderC. albicans 194B >P. aeruginosa=S. typhi >C. glabrata 44B >C. neoformans >E. coli. It shows greater activity towards the fungi than the bacteria species and their activities are comparable to those of the reference drugs used. The complex is also more active than the reference drug nystatin towards the fungi species. This indicates that reaction of metal ions with the ligand plays an important role in enhancing its antimicrobial activity. This increase in activity could be due to the reduction of the polarity of the metal ion by partial sharing of the positive charge with the ligand’s donor atoms so that there is electron delocalization within the metal complex. This may increase the hydrophobic and lipophilic character of the metal complex, enabling it to permeate the lipid layer of the organism killing them more effectively [39, 40].


## 3.1. Synthesis of the Complex

The title complex is pink and air stable with a sharp melting point (246°C) indicating its purity. The molar conductivity value of the complex is 67.5 Ωcm−2 mol−1 in water, indicating that it is a nonelectrolyte.


## 3.2. X-Ray Crystal Structure

The ORTEP view of the crystal structure of bis(2-aminopyridine)-μ-bis(dicyanamido) cobaltate(II), [Co(2-ampy)2(dca)2] together with the atom numbering scheme used in the corresponding tables is shown in Figure 1. The crystal packing diagram for [Co(2-ampy)2(dca)2] seen along the crystallographic a-axes is shown in Figure 2 and the 1-D polymeric chain structure of the complex is shown in Figure 3. The crystal data is presented in Table 1, while the selected bond lengths and bond angles are shown in Table 2.Table 1
Crystal data and structure refinement for [Co(2-ampy)2(dca)2].
Empirical formula
C14H14CoN10
Formula weight
381.28
Temperature
293(2) K
Wavelength
0.71073 Å
Crystal system
Monoclinic
Space group
P21/c
Unit cell dimensions
a = 7.4488(4) Å
b = 14.8145(8) Å
c = 7.3934(4) Å
α = 90°
β = 102.016(3)°
γ = 90°
Volume
797.99(7) Å3
Z
2
Density (calculated)
1.587 mg/m3
Absorption coefficient
1.097 mm−1
F(000)
390
Crystal size
0.25 × 0.25 × 0.20 mm
Theta range for data collection
2.75 to 27.47°
Limiting indices
−9 ≤h ≤ 9, −19 ≤ k ≤ 19, −9 ≤ l ≤ 9
Reflections collected/unique
14670/1813 [R(int) = 0.0543]
Completeness to theta
27.47 99.0%
Absorption correction
Semiempirical from equivalents
Max. and min. transmission
0.8105 and 0.7711
Refinement method
Full-matrix least-squares onF2
Data/restraints/parameters
1813/44/145
Goodness-of-fit onF2
1.102
FinalR indices [I > 2 sigma(I)]
R
1 = 0.0432, wR2 = 0.1142
R indices (all data)
R
1 = 0.0568, wR2 = 0.1258Table 2
Selected bond lengths [Å] and angles [°] for [Co(2-ampy)2(dca)2].
Co(1)-N(3)
2.126(2)
N(3)-Co(1)-N(3)#1
180.0
Co(1)-N(3)#1
2.126(2)
N(3)-Co(1)-N(5)
92.28(10)
Co(1)-N(5)
2.128(2)
N(3)#1-Co(1)-N(5)
87.72(10)
Co(1)-N(5)#1
2.128(2)
N(3)-Co(1)-N(5)#1
87.72(10)
Co(1)-N(1)#1
2.193(3)
N(3)#1-Co(1)-N(5)#1
92.28(10)
Co(1)-N(1)
2.193(3)
N(5)-Co(1)-N(5)#1
180.00(9)
N(1)-C(1)
1.342(4)
N(3)-Co(1)-N(1)#1
91.68(10)
N(1)-C(5)
1.350(4)
N(3)#1-Co(1)-N(1)#1
88.32(10)
N(5)-C(7)
1.134(3)
N(5)-Co(1)-N(1)#1
92.02(10)
N(2)-C(1)
1.360(4)
N(5)#1-Co(1)-N(1)#1
87.98(10)
C(5)-C(4)
1.364(5)
N(3)-Co(1)-N(1)
88.32(10)
C(3)-C(2)
1.358(6)
N(3)#1-Co(1)-N(1)
91.68(10)
C(1)-C(2)
1.391(5)
N(5)-Co(1)-N(1)
87.98(10)
C(7)-N(4)#2
1.305(15)
N(5)#1-Co(1)-N(1)
92.02(10)
C(7)-N(4′)#2
1.313(14)
N(1)#1-Co(1)-N(1)
180.00(13)
N(3)-C(6)
1.127(6)
C(1)-N(1)-C(5)
116.8(3)
N(3)-C(6′)
1.129(6)
C(1)-N(1)-Co(1)
128.3(2)
N(4)-C(7)#3
1.305(15)
C(5)-N(1)-Co(1)
114.9(2)
N(4)-C(6)
1.324(18)
C(7)-N(5)-Co(1)
157.7(2)
N(4′)-C(6′)
1.310(14)
N(1)-C(5)-C(4)
124.1(3)
N(4′)-C(7)#3
1.314(14)
N(1)-C(1)-N(2)
118.3(3)
C(3)-C(2)
1.358(6)
N(1)-C(1)-C(2)
121.9(3)
C(1)-C(2)
1.391(5)
N(2)-C(1)-C(2)
119.8(3)
C(3)-C(2)-C(1)
119.9(4)
Symmetry transformations used to generate equivalent atoms:
#1:-x, -y, -z+2; #2: x, y, z-1; #3: x, y, z+1.Figure 1
ORTEP view of the complex [Co(2-ampy)2(dca)2] together with the numbering scheme.Figure 2
Packing diagram of the complex showing hydrogen bonding scheme.Figure 3
1-D polymeric chain structure of the complex.The complex crystallizes in the monoclinic crystal system with space group P21/c. The asymmetric unit consists of one 2-ampy molecule, one dicyanamide anion, and one Co(II) ion. The crystal structure shows that Co1 adopts a slightly distorted octahedral environment (CoN6) in which it is covalently bonded to two pyridine N-atoms (Co-N1 2.193(3) Å) arranged axially and four nitrile N-atoms (Co1-N3 2.126(2) Å and Co1-N5 2.128(2) Å) from four dca anions in equatorial positions. The Co1-N1 bond length is slightly longer than that reported for other cobalt complexes wih 2-ampy [4, 7, 9, 20]. The Co1-N3 (2.126 Å) and Co1-N5 (2.128 Å) bond lengths are similar to values reported in the literature for other Co-N bonds with nitrile N [26, 30]. The dca ligand adopts a bridging coordination mode through the terminal nitrile N-atoms. In the equatorial plane, the bonding configuration of dca around the Co1 atoms is nonlinear as evidenced by the bond angles C6-N3-Co1 (164.9°) and C7-N5-Co1 (157.7°). This observation is consistent with the literature reports [30]. Each Co1 atom is linked to two Co1 atoms through two 1,5-μ2-dca bridges resulting in a 1-D polymeric chain structure (Figure 3). There are no intermolecular hydrogen bonds in the complex but only intrachain H-bonds between the exocyclic amino group and dca nitrogen atom (N2-H⋯N3) and that between N-atoms of dca (N5⋯N3) as well as short contacts. The chains are held together by these short contacts.


## 3.3. IR Spectroscopy

The relevant IR bands are summarized in Table3. In the spectrum of 2-ampy, the absorption bands at 3478 and 3287 cm−1 in the ligand assigned to νasN-H and νs(N-H), respectively, are not shifted in the complex indicating that the amino N-atom is not participating in bonding [4]. This observation is consistent with the X-ray crystal structure that shows coordination of the 2-ampy ligand only through the pyridine N-atom. The sharp vibration band at 1557 cm−1 attributed to νC=N of 2-ampy has been shifted to 1549 cm−1 in the complex, indicating its participation in bonding [7]. The spectra of the dca ligand and the complex show strong absorption bands in the 2310–2100 cm−1 region attributed to the νs+νas (C≡N), νas (C≡N), and νs (C≡N) vibrational modes of dca [27, 30]. The appearance of two new characteristic bands, 434 cm−1 and 560 cm−1 in the spectrum of the complex, which were not found in the spectra of the ligands, indicates the presence of M-N bonding between the metal and the nitrogen atoms of both 2-aminopyridine and dca. This observation is confirmed by the X-ray structure of the complex which shows that cobalt is bonded to both 2-ampy and dca through N-atoms.Table 3
Relevant IR bands of the ligands and complex.
Compounds
ν
(N-H) cm−1
ν
(C
≡
N) cm−1
ν
(C=N) cm−1
ν
(C-N) cm−1
ν
(M-N) cm−1
2-ampy
3287
/
1557
1140
/
dca
/
2226
/
1338
/
Co(2-ampy)2(dca)2
3478
2241
1489
1329
434
560


## 3.4. UV-Visible Spectroscopy

In octahedral symmetry, six-coordinate high-spin cobalt(II) exhibits three spin-allowed electronic transitions assigned as4T1g(F) → 4T2g, 4T1g(F) → 4A2g and 4T1g(F) → 4T1g(P) [27]. The UV-vis spectrum of the title compound reveals two (d-d) absorption bands at 498 nm and 642 nm which correspond to 4T1g(F) → 4T2g and 4T1g(F) → 4T1g(P) transitions, respectively [27]. This discloses octahedral geometry. The band at 427 nm is masked by the broad band at 498 nm. This observation is consistent with octahedral geometry around the Co(II) center and this is confirmed by the X-ray structure of the complex. In octahedral symmetry, six-coordinate high-spin cobalt(II) exhibits three spin-allowed electronic transitions assigned as 4T1g(F) → 4T2g, 4T1g(F) → 4A2g, and 4T1g(F) → 4T1g(P) [27].


## 3.5. Antimicrobial Tests

The potency of the metal salt, 2-aminopyridine, dca, and the complex together with the reference antibacterial drug (chloramphenicol) and antifungal drug (nystatin) was evaluated against four bacteria and four fungi strains. The results of the preliminary screening obtained are presented in Table4.Table 4
Diameter of zone of inhibition of the complex, ligands, and the metal salt.
Species
Zone of inhibition (mm)
Co(NO3)2
dca
2-ampy
Co(2-ampy)2(dca)2
Chloramphenicol
Nystatin
Fungi
C. albicans ATCC P37039
8.5
11.5
6.0
6.0
7.5
6.0
C. albicans 194B
6.0
7.5
7.0
9.0
14.5
7.0
C. glabrata 44B
7.5
14.0
6.0
8.0
6.0
6.0
C. neoformans
8.0
11.5
6.0
7.0
10.5
9.5
Bacteria
E. coli
7.0
9.0
8.0
6.0
12.0
6.0
P. aeruginosa
11.5
6.0
6.0
8.5
11.5
6.0
S. typhi
11.0
6.0
8.0
8.5
10.0
6.0
S. aureus
10.0
6.0
6.0
6.0
14.0
10.5The results indicate that dca exhibits the highest activity against the pathogens, especially against the fungi species, followed by the metal salt with a generally high activity against the pathogens. The ligand 2-aminopyridine shows a relatively low activity against both fungi and bacteria species. The metal complex shows moderate activity compared to that of the free ligands. The complex is most active against the fungiC. albicans 194B,C. glabrata 44B and the bacteria speciesP. aeruginosa andS. typhi. The activity of the complex towards the microorganisms decreases in the orderC. albicans 194B >P. aeruginosa=S. typhi >C. glabrata 44B >C. neoformans >E. coli. It shows greater activity towards the fungi than the bacteria species and their activities are comparable to those of the reference drugs used. The complex is also more active than the reference drug nystatin towards the fungi species. This indicates that reaction of metal ions with the ligand plays an important role in enhancing its antimicrobial activity. This increase in activity could be due to the reduction of the polarity of the metal ion by partial sharing of the positive charge with the ligand’s donor atoms so that there is electron delocalization within the metal complex. This may increase the hydrophobic and lipophilic character of the metal complex, enabling it to permeate the lipid layer of the organism killing them more effectively [39, 40].


## 4. Conclusion

The synthesis of a novel mixed ligand Co(II) 1-D polymer with 2-aminopyridine and dca has been reported. The equatorial and terminal bridging dca ligands coordinate in a nonlinear manner to the central metal ion while the axial 2-ampy ligands coordinate to the Co(II) ion through the pyridine N-atoms. The Co(II) ion in the complex adopts a slightly distorted octahedral environment comprising two pyridine N-atoms from 2-aminopyridine and four nitrile N-atoms from the dicyanamide. The amino N-atoms are involved in intrachain hydrogen bonds. The results of the preliminary antimicrobial screening against four pathogenic bacteria and four fungi species indicate that the complex is moderately active and could be further screenedin vitro against a wide range of pathogens.


## Supporting Information

CCDC 1007918 contains the supplementary crystallographic data for the complex. The data can be obtained free of charge from The Cambridge Crystallographic Data Centre viahttps://www.ccdc.cam.ac.uk/data_request/cif.



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*Source: 106838-2015-06-29.xml*