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The dataset generation failed because of a cast error
Error code: DatasetGenerationCastError
Exception: DatasetGenerationCastError
Message: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'image'})
This happened while the json dataset builder was generating data using
hf://datasets/mint-multix/all_data_v2_novqa/validation/validation.jsonl (at revision 8891d016578fe735dd27975202e1e5bec9216e27)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback: Traceback (most recent call last):
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1870, in _prepare_split_single
writer.write_table(table)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 622, in write_table
pa_table = table_cast(pa_table, self._schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2292, in table_cast
return cast_table_to_schema(table, schema)
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2240, in cast_table_to_schema
raise CastError(
datasets.table.CastError: Couldn't cast
text: string
image: string
tokens: list<item: int64>
child 0, item: int64
task: string
image_path: string
to
{'text': Value(dtype='string', id=None), 'tokens': Sequence(feature=Value(dtype='int64', id=None), length=-1, id=None), 'image_path': Value(dtype='string', id=None), 'task': Value(dtype='string', id=None)}
because column names don't match
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1412, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 988, in stream_convert_to_parquet
builder._prepare_split(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1741, in _prepare_split
for job_id, done, content in self._prepare_split_single(
File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1872, in _prepare_split_single
raise DatasetGenerationCastError.from_cast_error(
datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
All the data files must have the same columns, but at some point there are 1 new columns ({'image'})
This happened while the json dataset builder was generating data using
hf://datasets/mint-multix/all_data_v2_novqa/validation/validation.jsonl (at revision 8891d016578fe735dd27975202e1e5bec9216e27)
Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)Need help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
text
string | tokens
sequence | image_path
string | task
string |
|---|---|---|---|
What procedure was performed?<image><reserved08706>An esophagogastroduodenoscopy was performed. This is a diagnostic procedure that uses a flexible endoscope to visualize the upper part of the gastrointestinal tract, including the esophagus, stomach, and the first part of the small intestine (duodenum). | [
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2
] | /localhome/data/datasets/Llava-Med/instruct/images/32787452_fig2-2324709620950121.jpg | multimodal_in_text_out_Chat |
<image>What is the organ shown in the image?<reserved08706>The organ shown in the image is the brain. | [
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] | /localhome/data/datasets/Llava-Med/instruct/images/29492368_FIG3.jpg | multimodal_in_text_out_Chat |
What does it mean if there are malignant cells with round to oval nuclei and a high nuclear-to-cytoplasmic ratio?<reserved08706>#### a) Clinical Interpretation
Malignant cells with round to oval nuclei that exhibit a high nuclear-to-cytoplasmic (N/C) ratio suggest aggressive or advanced cancer. The N/C ratio is a measure used to determine the proportion of the cell's volume occupied by the nucleus compared to the cytoplasm. A higher ratio is often associated with malignancy due to rapid cell division and growth, which is characteristic of cancer cells.
In this case, the observations include:
- **Round to Oval Nuclei**: This refers to the shape of the cell's nucleus. Irregular or varied shapes can also suggest cancer.
- **Thick Nuclear Membrane**: A thicker membrane might indicate increased protein synthesis or other cellular abnormalities.
- **Prominent Nucleoli**: These indicate heightened ribosomal RNA synthesis, which is associated with active protein production and cell growth.
- **Eosinophilic Granular Cytoplasm**: This describes the cell's content appearance when stained, highlighting cellular and structural components visible under a microscope.
#### b) Visual Context
<image>
You can imagine the malignant cells having a more prominent center (nucleus) taking up more space within the cell, unlike normal cells where the nucleus is smaller and cytoplasm larger by comparison. If you picture a small plum inside a large hollow ball, in cancer cells, that plum would be disproportionately larger relative to the ball, representing the cell.
#### c) Key Components
- **Diagnostic Significance**: Such cellular features highlight malignancy, often warranting further investigation.
- **Related Conditions**: These cellular characteristics are common in aggressive forms of cancer like carcinoma.
- **Normal Reference Ranges**: Normally, the N/C ratio is balanced or favors slightly more cytoplasm.
- **Next Steps**: Further diagnostic tests such as additional histopathological examination, immunohistochemistry, or molecular testing might be recommended to identify specific cancer types and guide treatment. | [
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] | /data0/quilt1m/quilt_1m/669298c7-2ec4-4158-9345-29c63c857e93_1.jpg | text_in_multimodal_out_chat |
Using the description Axial non-contrast CT scan showing obstructive ureteric calculus. (Arrow indicates calculus)., produce a realistic depiction.<reserved08706><image> | [
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Using Hyperkeratosis, parakeratosis, attenuation of granular layer, thinning of stratum corneum, dilatation of dermal blood vessels, and sometimes Auspitz sign indicating blood vessel extravasation and inflammatory infiltrate., generate an image that reflects the details well.<reserved08706><image> | [
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] | /data0/quilt1m/quilt_1m/8mUstGH72OQ_image_73e243f7-08e7-4ffa-b3f3-513a36c0eb2c.jpg | image_gen_caption |
Describe the image with an emphasis on each aspect’s detail: <image><reserved08706>Sunday dermpath special. Not all cases with a dense lymphoid infiltrate in skin represent a lymphoproliferative disorder/lymphoma. Proper assessment of the cytomorphology of infiltrate (& its predominant component) & IHC results are key to avoiding misclassification (1/1). | [
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] | /data0/quilt1m/quilt_1m/1561525121843662848_3.jpg | image_gen_caption |
With the following description, Description of a section of human uterus taken during the early proliferative phase of the menstrual cycle., create an accurate image.<reserved08706><image> | [
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] | /data0/quilt1m/quilt_1m/ujilbsMBHts_image_59c8258b-c4ff-46b1-a12f-bec97e542172.jpg | image_gen_caption |
<image>What is the arrow pointing to in the image?<reserved08706>The arrow in the image is pointing to a pigmented graft, which is a cluster of transplanted retinal pigment epithelium (RPE) cells. These cells are pigmented, which makes them visible in the image. | [
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2
] | /localhome/data/datasets/Llava-Med/instruct/images/23049812_pone-0045532-g003.jpg | multimodal_in_text_out_Chat |
Generate a clear and precise visual based on the following text: X-ray of the left tibia. Anteroposterior plain film of the left tibia showing fibrous dysplasia.<reserved08706><image> | [
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Create an accurate illustration using this description as a guide: Transmission electron microscope (TEM) image (a) and X-ray pattern (b) of the silica matrix containing both enzymes.<reserved08706><image> | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC6155228_molecules-22-00377-f002_371676.jpg | image_gen_caption |
Provide a brief description of the given image: <image><reserved08706>Degenerated dermis, thrombus blood vessels, calcification, and panniculitis are also present. | [
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] | /data0/quilt1m/quilt_1m/BmF-kN6xvfk_image_f6e35799-572d-49ac-ac5d-ee1a6a78786c.jpg | image_gen_caption |
Render a clear and concise summary of the photo: <image><reserved08706>Chest X-ray posteroanterior view showing a nail in right main bronchus | [
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] | /localhome/data/datasets/Llava-Med/filtered_37k/transfer_files/25624553_F1.jpg | image_gen_caption |
Produce a scene or structure inspired by this description: Nine-month after the first operation, magnetic resonance imaging revealed a local recurrence of primary tumor, which showed heterogeneous enhancement on post contrast imaging (A). Two-year after secondary surgery plus radiotherapy. T1-weighted enhanced magnetic resonance imaging shows no evidence of disease residue or recurrence (B).<reserved08706><image> | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC3268097_F3_123959.jpg | image_gen_caption |
What could the presence of whorl-like hyperreflective material in the basal epithelium and dot-like lesions in the anterior stroma indicate in a systemic sclerosis patient?<reserved08706>#### Clinical Interpretation
In a patient with systemic sclerosis, the presence of whorl-like hyperreflective, extracellular material in the basal epithelium and dot-like lesions in the anterior stroma can indicate significant changes in the corneal structure, which are often associated with chronic disease progression. Systemic sclerosis is known for causing fibrosis and changes in connective tissue, and these unique findings may reflect such alterations in the cornea. The hyperreflective material suggests abnormal extracellular matrix deposits, while the activated keratocytes and dot-like lesions in the stroma might indicate a response to ongoing inflammation or fibrotic changes.
#### Visual Context
<image>
Visualizing the cornea, the basal epithelium is the outer layer just at the surface, while the anterior stroma lies beneath it, akin to how the peel covers the flesh of an apple. The whorl-like patterns could resemble light reflecting off tiny swirls on a polished surface. Spotting dot-like lesions in the anterior stroma is akin to seeing small blemishes within the apple's flesh, suggestive of disruption or irritation beneath the surface.
#### Key Components
- **Diagnostic Significance:** These findings might suggest active inflammation or fibrotic processes in the eye due to systemic sclerosis.
- **Related Conditions:** Aside from systemic sclerosis, conditions like keratoconus or other corneal dystrophies could exhibit similar patterns.
- **Normal Reference Ranges:** Normally, the cornea should be clear without hyperreflective material or structural disarray.
- **Potential Next Steps:** Further ophthalmologic evaluation, including more detailed imaging or functional visual tests, might be necessary to assess the impact on vision and guide management for preventing further complications. | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC8160323_Fig3_455166.jpg | text_in_multimodal_out_chat |
Write a terse but informative summary of the picture: <image><reserved08706>The infiltrate is located in the dermis and does not obscure or directly contact the epidermis. | [
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] | /data0/quilt1m/quilt_1m/yc_3cAxt7NA_image_5ff3f1ca-e25a-49ef-9f28-31866f5abc6b.jpg | image_gen_caption |
Why would a Holstein bull have a perforation in the reticulum and liver abscesses?<reserved08706>#### a) Clinical Interpretation
A Holstein bull with a circular transmural perforation in the reticulum and liver abscesses often has a condition known as "Hardware Disease," or traumatic reticuloperitonitis. This happens when the animal ingests metallic foreign bodies accidentally mixed with feed. Once these objects lodge in the reticulum, they can pierce its wall, causing a perforation and potentially leading to an infection that can spread to the liver, forming abscesses.
The observed fibrosis and adhesions indicate a chronic inflammatory response, while the yellow purulent material suggests an active infection. Similarly, the liver abscess, a pocket filled with pus surrounded by fibrosis, indicates the body’s attempt to contain the spread of infection.
#### b) Visual Context
- The reticulum, part of the cow's stomach, is located near the heart and diaphragm. The presence of foreign metallic objects can pierce the stomach wall, similar to how a thumbtack could puncture a piece of paper.
- The liver is situated close by, and when infections spread, it can form abscesses visible as areas filled with fluid, akin to a balloon filled with water, surrounded by a thicker wall (fibrosis).
#### c) Key Components
- Hardware disease is a common cause of gastrointestinal perforations in cattle.
- Preventative measures include administering magnets to cattle to attract and contain small metal objects safely within the rumen.
- Treatment involves removing the foreign object, usually surgically, and addressing the infection with antibiotics.
- Regularly inspecting feed and implementing preventative practices can reduce the incidence of such conditions. Further investigations and prompt veterinary care are essential when a bull shows symptoms like decreased appetite, abdominal pain, or fever. | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC7840216_vms3341-fig-0002_354643.jpg | text_in_multimodal_out_chat |
Summarize the main features visible in the image: <image><reserved08706>MRI axial image is showing a predominately T2 hypo‐intense lesion within the thoracic spinal canal at T8 level compressing the cord anteriorly and increased cord signal consistent with edema. | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC5494399_ccr31016-fig-0002_185621.jpg | image_gen_caption |
Share a concise interpretation of the image provided: <image><reserved08706>Lichen striatus can have a granulomatous appearance and a chameleon pattern. | [
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] | /data0/quilt1m/quilt_1m/4rn6oDo69PQ_image_75a7a93e-f9ad-42ad-ad72-84f6eab2f726.jpg | image_gen_caption |
Write an exhaustive depiction of the given image: <image><reserved08706>Abdominal computed tomography (CT) showed extensive portal (A), mesenteric vessels gas [(B), arrow], and dilated bowel loops. One segment of swollen small intestine [(B), arrowhead] without obvious pneumatosis intestinalis was also observed in the CT scan. | [
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] | /localhome/data/datasets/Llava-Med/filtered_37k/transfer_files/33693027_F1.jpg | image_gen_caption |
Provide a detailed description of the given image: <image><reserved08706>Axial T2 weighted image of the pelvis with fat saturation reveals bone marrow edema (white) on the right ischial spine just adjacent to the symphysis pubis suggesting osteomyelitis. Blood cultures grew Methicillin-sensitive Staphylococcus aureus and patient was treated with a prolonged course of intravenous ceftriaxone by the inpatient infectious disease team and improved. | [
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] | /localhome/data/datasets/Llava-Med/filtered_37k/transfer_files/25493141_f1-wjem-15-880.jpg | image_gen_caption |
Provide a brief overview of what is shown in the image: <image><reserved08706>The presence of blue mucin in a cell and lumen, indicating a mucoid component. | [
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Render a clear and concise summary of the photo: <image><reserved08706>These features support the diagnosis of Kaposiform hemangioendothelioma or tufted angioma. | [
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Summarize the visual content of the image: <image><reserved08706>Computed tomography of chest showing a decrease in size of pulmonary nodules (black arrow) three months after starting nab-sirolimus. | [
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] | /data0/quilt1m/quilt_1m/zeB0jMEQmhI_image_a12bd23d-3896-4030-a625-fdc30afd8755.jpg | image_gen_caption |
Create a compact narrative representing the image presented: <image><reserved08706>Immunohistochemical study showing diffuse positivity for CD 30 (×200). | [
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2014,
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2014,
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702,
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2007,
7954,
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30070,
16401,
16399,
16399,
16392,
16397,
2
] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC3870106_fig2_253545.jpg | image_gen_caption |
Concisely explain the primary focus of the image: <image><reserved08706>Keratinocytes are responsible for the dark pigmentation in the basal layer, not melanocytes. | [
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207,
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652,
7648,
7460,
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604,
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6034,
8065,
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3768,
2009,
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5275,
5455,
4184,
372,
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125,
610,
863,
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2937,
6372,
2014,
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6309,
7372,
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2007,
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2036,
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693,
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5965,
2001,
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5987,
7667,
7056,
2895,
7696,
2616,
448,
129,
3279,
5758,
6874,
6118,
5730,
2007,
2998,
6216,
5058,
3420,
7775,
6522,
2482,
5313,
3129,
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] | /data0/quilt1m/quilt_1m/_SPNsagiJsg_image_116273c9-49af-4b2f-852e-eda843c62131.jpg | image_gen_caption |
Generate a detailed image aligned with A375 melanoma cells on CAMs treated with Api: (a) Stereomicroscopic in vivo images of the areas previously inoculated with melanoma cells and treated with Api 30 and 60 µM and with DMSO 1% as solvent control; initially—0 h, after 24 h, after 72 h, and after 96 h, ex vivo, after membranes biopsies were obtained; (b) the angiogenic inhibition % in A375 melanoma cells environment, at 48 h, for Api 30 µM and 60 µM compared to DMSO 1%. * p < 0.05..<reserved08706><image> | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC6988673_fig1_107755.jpg | image_gen_caption |
Render a clear and concise summary of the photo: <image><reserved08706>Angiography results before (a) and 8 days after (b) stent implantation | [
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] | /localhome/data/datasets/Llava-Med/filtered_37k/transfer_files/22174503_F2.jpg | image_gen_caption |
Illustrate the structure or content described in this text: Retinography (a) and fundus autofluorescence imaging (b) showing new lesions. The patient had initiated a second tapered course of prednisone. At this point, a dexamethasone intravitreal implant was indicated<reserved08706><image> | [
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] | /localhome/data/datasets/pmc_oa/caption_T060_filtered_top4_sep_v0_subfigures/PMC5005228_Fig3_68021.jpg | image_gen_caption |
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