A method performed by a computer system control system, comprising, at each of a plurality of time steps: accessing a data stream to obtain data values corresponding to the time step that result from operations performed by a computer system of one or more computers, the data values being descriptive of the operations performed by the computer system; providing the data values as input to a data disaggregation machine learning model, being an auto-encoder, that generates, based on the data values, descriptors of latent causes of the data values that correspond to the activations of one or more hidden layers of the auto-encoder, the latent cause of each data value being an underlying process that results in the generation of the data value, the descriptor of the latent cause of each data value being a latent variable that is a compressed representation of the data value, the latent variable being data generated internally by the computer system control system, wherein the data disaggregation machine learning model includes a set of data disaggregation model parameters; processing, by the data disaggregation machine learning model, the data values according to the set of data disaggregation machine learning model parameters to generate the descriptors of the latent causes of the data values; providing the data values and the descriptors of the latent causes of the data values as inputs to a control system model that generates embedded representations of commands to modify the operations performed by the computer system, wherein the control system model includes a set of control system model parameters; processing, by the control system model, the data values and the descriptors of the latent causes of the data values according to the set control system model parameters to generate the embedded representations of commands to modify the operations performed by the computer system; determining commands to modify the operations performed by the computer system based on the embedded representations of commands to modify the operations performed by the computer system generated by the control system model; and providing the commands to the computer system. accessing a data stream to obtain data values corresponding to the time step that result from operations performed by a computer system of one or more computers, the data values being descriptive of the operations performed by the computer system; providing the data values as input to a data disaggregation machine learning model, being an auto-encoder, that generates, based on the data values, descriptors of latent causes of the data values that correspond to the activations of one or more hidden layers of the auto-encoder, the latent cause of each data value being an underlying process that results in the generation of the data value, the descriptor of the latent cause of each data value being a latent variable that is a compressed representation of the data value, the latent variable being data generated internally by the computer system control system, wherein the data disaggregation machine learning model includes a set of data disaggregation model parameters; processing, by the data disaggregation machine learning model, the data values according to the set of data disaggregation machine learning model parameters to generate the descriptors of the latent causes of the data values; providing the data values and the descriptors of the latent causes of the data values as inputs to a control system model that generates embedded representations of commands to modify the operations performed by the computer system, wherein the control system model includes a set of control system model parameters; processing, by the control system model, the data values and the descriptors of the latent causes of the data values according to the set control system model parameters to generate the embedded representations of commands to modify the operations performed by the computer system; determining commands to modify the operations performed by the computer system based on the embedded representations of commands to modify the operations performed by the computer system generated by the control system model; and providing the commands to the computer system.