A method for filling an open transport box (tray) comprising a plurality of holding compartments with individual portions of medications, wherein the individual portions are removed from medication packages that are dispensed from an automated storage facility by utilizing an output/input station, wherein: a) a nominal filling of the holding compartments of the transport box is made available to a control unit and the medication packages to be dispensed and their dispensing sequence are determined thereof, b) a medication package, which contains at least one individual portion of a specified medication, is dispensed from the automated storage facility in that the medication package is deposited at a first transfer point of the output/input station by an operating unit of the automated storage facility and transported to an output point by a first transport device of the output/input station as soon as the output point is clear, c) the medication package is removed from the output point of the output/input station, d) one or more individual portions are removed from the removed medication package by an operator and respectively placed (29, 30) into one or more specified holding compartments of the transport box, with the respective holding compartment to be filled being displayed to the operator by a display device controlled by the control unit, and with the correct filling of the individual portions being monitored by the control unit, e) the partially empty medication package is deposited at a re-storage point of the output/input station, which is arranged in spatial vicinity of the output point, and transported to a second transfer point by means of a second transport device, with the operating unit of the automated storage system accessing this second transfer point in order to once again store the medication package in the automated storage facility, and f) steps b) through e) are respectively repeated for a following medication package until all individual portions have been filled into the transport box in accordance with the nominal allocation. a) a nominal filling of the holding compartments of the transport box is made available to a control unit and the medication packages to be dispensed and their dispensing sequence are determined thereof, b) a medication package, which contains at least one individual portion of a specified medication, is dispensed from the automated storage facility in that the medication package is deposited at a first transfer point of the output/input station by an operating unit of the automated storage facility and transported to an output point by a first transport device of the output/input station as soon as the output point is clear, c) the medication package is removed from the output point of the output/input station, d) one or more individual portions are removed from the removed medication package by an operator and respectively placed (29, 30) into one or more specified holding compartments of the transport box, with the respective holding compartment to be filled being displayed to the operator by a display device controlled by the control unit, and with the correct filling of the individual portions being monitored by the control unit, e) the partially empty medication package is deposited at a re-storage point of the output/input station, which is arranged in spatial vicinity of the output point, and transported to a second transfer point by means of a second transport device, with the operating unit of the automated storage system accessing this second transfer point in order to once again store the medication package in the automated storage facility, and f) steps b) through e) are respectively repeated for a following medication package until all individual portions have been filled into the transport box in accordance with the nominal allocation.