A biomolecular measurement system, which enables to measure the intermolecular forces arising from the interaction between two biomolecules or the intramolecular forces of a single biomolecule by using an atomic force microscope, basically comprising, - at least one cantilever which remains fixed, - at least one cantilever tip (2.1) to which a single biomolecule can bind, - at least one magnetic nanowire to the end of which a single biomolecule (A, B) can bind, wherein, - the single molecule (A, B) which can bind to the end of the magnetic nanowire can bind to: - the single biomolecule which can bind to the cantilever tip (2.1); or - to the cantilever tip (2.1) so that the biomolecules (A, B) bound together or the single biomolecule can have one end attached to the magnetic nanowire and the other end attached to cantilever tip (2.1), - at least one laser source which projects light on the cantilever, - at least one photodetector on which the light reflected from the cantilever is projected, and wherein - at least one actuator which, by applying magnetic force to the magnetic nanowire, enables to pull and push the magnetic nanowire on x, y, z axes, wherein - the magnetic nanowire moves by means of the magnetic force exerted by the actuator and enables to move the molecule which is attached to the end thereof, and - the cantilever moves at any coordinate on the x, y and z axes in the direction of the biomolecules or makes a rotational movement without using any actuator, only by means of the movement of the biomolecules actuated by the actuator. - at least one cantilever which remains fixed, - at least one cantilever tip (2.1) to which a single biomolecule can bind, - at least one magnetic nanowire to the end of which a single biomolecule (A, B) can bind, wherein, - the single molecule (A, B) which can bind to the end of the magnetic nanowire can bind to: - the single biomolecule which can bind to the cantilever tip (2.1); or - to the cantilever tip (2.1) so that the biomolecules (A, B) bound together or the single biomolecule can have one end attached to the magnetic nanowire and the other end attached to cantilever tip (2.1), - the single biomolecule which can bind to the cantilever tip (2.1); or - to the cantilever tip (2.1) so that the biomolecules (A, B) bound together or the single biomolecule can have one end attached to the magnetic nanowire and the other end attached to cantilever tip (2.1), - at least one laser source which projects light on the cantilever, - at least one photodetector on which the light reflected from the cantilever is projected, and wherein - at least one actuator which, by applying magnetic force to the magnetic nanowire, enables to pull and push the magnetic nanowire on x, y, z axes, wherein - the magnetic nanowire moves by means of the magnetic force exerted by the actuator and enables to move the molecule which is attached to the end thereof, and - the cantilever moves at any coordinate on the x, y and z axes in the direction of the biomolecules or makes a rotational movement without using any actuator, only by means of the movement of the biomolecules actuated by the actuator. - the magnetic nanowire moves by means of the magnetic force exerted by the actuator and enables to move the molecule which is attached to the end thereof, and - the cantilever moves at any coordinate on the x, y and z axes in the direction of the biomolecules or makes a rotational movement without using any actuator, only by means of the movement of the biomolecules actuated by the actuator.