A method of determining haplotype genomic sequence information, the method comprising, providing fragments of genomic DNA; reacting the fragments with an adapter-loaded tagmentase that creates DNA fragments defined by breakpoints in the fragments and inserts an adaptor at the break points, wherein the reacting is under conditions such that the tagmentase binds the breakpoints to form linked DNA segments in the form of DNA segment-first adaptor tagmentase second adaptor-(DNA segment-first adaptor tagmentase second adaptor) n -DNA segment, where n is any integer and "-" indicates a covalent linkage and wherein the linked DNA maintains contiguity compared to genomic DNA; encapsulating the linked DNA segments into partitions, said partitions comprising: a bead, the bead having a forward primer oligonucleotide linked to the bead by a 5' end of the forward primer oligonucleotide, the forward primer oligonucleotide having a bead-specific barcode and a 3' end specific for and complementary to the first or second adaptor; a reverse primer oligonucleotide having a 3' end complementary to the first or second adaptor, wherein the forward primer 3' end and the reverse primer 3' end are complementary to different adaptors selected from the first adaptor and the second adaptor; cleaving the forward oligonucleotide primer from the bead prior to amplification; displacing the tagmentase from the segments in the partitions; performing amplification wherein the forward primer and reverse primer oligonucleotide generate amplicons from the DNA segments, such that amplicons within a partition are barcoded with the bead barcode; combining the partitions to form a reaction mixture containing the amplicons; and nucleotide sequencing the amplicons. providing fragments of genomic DNA; reacting the fragments with an adapter-loaded tagmentase that creates DNA fragments defined by breakpoints in the fragments and inserts an adaptor at the break points, wherein the reacting is under conditions such that the tagmentase binds the breakpoints to form linked DNA segments in the form of DNA segment-first adaptor tagmentase second adaptor-(DNA segment-first adaptor tagmentase second adaptor) n -DNA segment, where n is any integer and "-" indicates a covalent linkage and wherein the linked DNA maintains contiguity compared to genomic DNA; encapsulating the linked DNA segments into partitions, said partitions comprising: a bead, the bead having a forward primer oligonucleotide linked to the bead by a 5' end of the forward primer oligonucleotide, the forward primer oligonucleotide having a bead-specific barcode and a 3' end specific for and complementary to the first or second adaptor; a reverse primer oligonucleotide having a 3' end complementary to the first or second adaptor, wherein the forward primer 3' end and the reverse primer 3' end are complementary to different adaptors selected from the first adaptor and the second adaptor; cleaving the forward oligonucleotide primer from the bead prior to amplification; displacing the tagmentase from the segments in the partitions; performing amplification wherein the forward primer and reverse primer oligonucleotide generate amplicons from the DNA segments, such that amplicons within a partition are barcoded with the bead barcode; combining the partitions to form a reaction mixture containing the amplicons; and nucleotide sequencing the amplicons. a bead, the bead having a forward primer oligonucleotide linked to the bead by a 5' end of the forward primer oligonucleotide, the forward primer oligonucleotide having a bead-specific barcode and a 3' end specific for and complementary to the first or second adaptor; a reverse primer oligonucleotide having a 3' end complementary to the first or second adaptor, wherein the forward primer 3' end and the reverse primer 3' end are complementary to different adaptors selected from the first adaptor and the second adaptor; cleaving the forward oligonucleotide primer from the bead prior to amplification; displacing the tagmentase from the segments in the partitions; performing amplification wherein the forward primer and reverse primer oligonucleotide generate amplicons from the DNA segments, such that amplicons within a partition are barcoded with the bead barcode; combining the partitions to form a reaction mixture containing the amplicons; and nucleotide sequencing the amplicons.