# coding=utf-8 # Copyright 2020 The HuggingFace Datasets Authors. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """MedHop: Reading Comprehension with Multiple Hops""" import json import os import datasets _CITATION = """\ @misc{welbl2018constructing, title={Constructing Datasets for Multi-hop Reading Comprehension Across Documents}, author={Johannes Welbl and Pontus Stenetorp and Sebastian Riedel}, year={2018}, eprint={1710.06481}, archivePrefix={arXiv}, primaryClass={cs.CL} } """ _DESCRIPTION = """\ MedHop is based on research paper abstracts from PubMed, and the queries are about interactions between pairs of drugs. \ The correct answer has to be inferred by combining information from a chain of reactions of drugs and proteins. """ _URL = "https://drive.google.com/uc?export=download&id=1ytVZ4AhubFDOEL7o7XrIRIyhU8g9wvKA" class MedHopConfig(datasets.BuilderConfig): """BuilderConfig for MedHop.""" def __init__(self, masked=False, **kwargs): """BuilderConfig for MedHop. Args: masked: `bool`, original or maksed data. **kwargs: keyword arguments forwarded to super. """ super(MedHopConfig, self).__init__(**kwargs) self.masked = masked class MedHop(datasets.GeneratorBasedBuilder): """MedHop: Reading Comprehension with Multiple Hops""" VERSION = datasets.Version("1.0.0") BUILDER_CONFIGS = [ MedHopConfig( name="original", version=datasets.Version("1.0.0"), description="The un-maksed MedHop dataset", masked=False, ), MedHopConfig( name="masked", version=datasets.Version("1.0.0"), description="Masked MedHop dataset", masked=True ), ] BUILDER_CONFIG_CLASS = MedHopConfig DEFAULT_CONFIG_NAME = "original" def _info(self): return datasets.DatasetInfo( description=_DESCRIPTION, features=datasets.Features( { "id": datasets.Value("string"), "question": datasets.Value("string"), "answer": datasets.Value("string"), "candidates": datasets.Sequence(datasets.Value("string")), "supports": datasets.Sequence(datasets.Value("string")), } ), supervised_keys=None, homepage="http://qangaroo.cs.ucl.ac.uk/", citation=_CITATION, ) def _split_generators(self, dl_manager): extracted_path = dl_manager.download_and_extract(_URL) medhop_path = os.path.join(extracted_path, "qangaroo_v1.1", "medhop") train_file = "train.json" if self.config.name == "original" else "train.masked.json" dev_file = "dev.json" if self.config.name == "original" else "dev.masked.json" return [ datasets.SplitGenerator( name=datasets.Split.TRAIN, gen_kwargs={"filepath": os.path.join(medhop_path, train_file)}, ), datasets.SplitGenerator( name=datasets.Split.VALIDATION, gen_kwargs={"filepath": os.path.join(medhop_path, dev_file)}, ), ] def _generate_examples(self, filepath): with open(filepath, encoding="utf-8") as f: examples = json.load(f) for i, example in enumerate(examples): example["question"] = example.pop("query") yield example["id"], example