Clinical trial NCT03855631: Exploiting Epigenome Editing in Kabuki Syndrome: a New Route Towards Gene Therapy for Rare Genetic Disorders
Official title: Exploiting Epigenome Editing in Kabuki Syndrome: a New Route Towards Gene Therapy for Rare Genetic Disorders
Study type: OBSERVATIONAL
Overall status: COMPLETED
Conditions: Kabuki Syndrome 1
Keywords: Kabuki syndrome CRIPSR/Cas9 KMT2D
Lead sponsor: University Hospital, Montpellier
Sponsor class: OTHER
Collaborators: name: Association Française contre les Myopathies Telethon
First posted: 2019-02-27
Enrollment: 8
Sex: ALL
Minimum age (years): 6
Standard ages: CHILD
ADULT
OLDER_ADULT
Accepts healthy volunteers: no
Observational model: COHORT
Time perspective: PROSPECTIVE
Sampling method: NON_PROBABILITY_SAMPLE
Study population: Pediatric population with KS and healthy adult (unaffected sex match parents of patients)

Brief summary: Starting from isolating primary cells from affected patients, an in vitro disease model system for KS will be developed. Using alternative strategies to obtain patient-derived mesenchymal stem cells, an integrative approach will be adopted for defining both the transcriptional and epigenetic regulatory networks perturbed upon the loss of function of KMT2D. Combining the self-renewal potential of mesenchymal stem cells (MSCs) with CRISPR/Cas9 technology, an epigenome editing approach as therapeutic strategy to rescue the activity of MLL4 will be developed.

A step forward is expected towards the understanding of those the molecular mechanisms governing the aetiology of Kabuki Syndrome (KS) and that the proposed in vitro disease model will provide to the scientific community an experimental system to study the KS. Importantly, the aim is to define the molecular bases of KS and to develop a therapeutic strategy that could ameliorate some of the abnormalities associated with KS.

Detailed description: Main and secondary objectives :

The main objective is to study the pathological role of ML mutations in KS to facilitate the identification and characterization of therapeutic strategies to improve the symptoms of patients with KS. Due to the lack of treatment in the KS, the aim is to develop a model of this disease from fibroblasts from patients and reprogram them into mesenchymal stem cells. This approach will generate a KS-specific stem cell bio-bank, allowing the identification of common disturbances caused by the loss of function (LoF) of KMT2D. The impact of the KMT2D LoF on transcription but also the epigenetic mechanisms activated during MSC differentiation will be described. Finally, the therapeutic potential of an epigenome "editing" approach to increase the expression of the wild KMT2D allele to restore the functional activity of MLL4 in treated MSCs will be evaluated.

The secondary objective is to evaluate the ability to return to normal after CRISPR/Case9 gene therapy treatment on patients' cells

Methodology (design study, population, description of groups (if applicable), inclusion criteria, non-inclusion, main and secondary judgment criteria, number of subjects to be included, statistical analysis...) :

Starting from primary cells isolated from affected patients, an in vitro model of the disease will be developed. An integrative but alternative strategy approach to obtain mesenchymal stem cells derived from patients to define normal and abnormal transcription and epigenetic circuits during KMT2D LoF will be adopted. By combining the autonomous renewal potential of MSCs with CRISPR/Cas9 technology, an approach to "editing" the epigenome for therapeutic purposes to restore MLL4 activity will be developed.

This project will represent a step forward in understanding the molecular mechanisms responsible for KS. The in vitro model will provide the scientific community with an experimental system to study KS. Finally, the aim is to define the molecular basis of KS and develop a therapeutic strategy to improve certain symptoms in patients with KS.

Process (number of visits, duration of inclusions, duration of follow-up):

8 people will be included: 4 patients with Kabuki syndrome authenticated by the molecular genetics study of the KMT2D gene.

4 parents of the same sex as the patient

Feasibility :

In the clinical genetics department of the Montpellier University Hospital, more than 40 patients with Kabuki syndrome are followed.

Impacts / prospects :

The identification of the consequences of mutations in the KMT2D gene on epigenetic mark changes and cellular structural changes as well as the attempt at gene correction by CRISPR/Cas9 will provide a better understanding of the disease (and the genes that are deregulated by post-KMT2D epigenetic changes) and will also open a promising path for gene therapy by CRISPR/Cas9 method.

Eligibility criteria: Inclusion Criteria:

1. For the patient = to have a Kabuki syndrome authenticated by molecular genetics (proof of mutation in the KMT2D gene)
2. For parents = having the same sex as your child
3. To be affiliated to a French social security system
4. Authorize the participation of the study

Exclusion Criteria:

1. Not be affiliated to a social security scheme (CMU is included)
2. Existence of a significant coagulation ruble (especially thrombocytopenic purpura in Kabuki patients with platelet counts \< 20,000 Units).
3. Genetic skin disease responsible for poor healing
4. Refusal to participate in the child's and/or parent's study

Primary outcomes:
measure: success rate of fibroblasts culture
timeFrame: one year maximum after inclusion
Secondary outcomes:
measure: success rate of turning fibroblasts into mesenchymal stem cells
timeFrame: one year maximum after inclusion
measure: success rate of CRISPR/Case9 gene therapy treatment on patients' cells
timeFrame: one year maximum after inclusion
Other outcomes:
Locations:
city: Montpellier
country: France
facility: Arnaud de villeneuve Hospital
state: Herault
Study officials:
affiliation: Center of Integrative Biology
name: Alessio Zippo, PhD
role: PRINCIPAL_INVESTIGATOR
References: