opened
nh3
username_0
This PR aims to fix the various issues with scater galaxy wrappers which should enable them to be run correctly as part of a dropletutils/scater/sc3 pipeline.
Scater galaxy wrappers fix
issue
created
pinin4fjords
username_1
@username_0 I'm assuming we'll need to make sure all your fixes for underlying scripts packages are merged and released before all these will work?
comment
created
nh3
username_0
@username_1 Yes, that's a good point.
comment
created
pinin4fjords
username_1
@username_0 have you finished with scater-scripts? You want to tag and release, or shall I?
comment
created
nh3
username_0
Just realised there are a few scripts not wrapped yet: run-pca, run-tsne, plot-reduced-dim. Not sure if they are required by the pipeline (MVP) though. Well, let's wait for a couple of days.
comment
created
nh3
username_0
As sc3 has its own dimension reduction function and doesn't depend on scater-run-pca, let's leave them for now.
comment