opened
Sheneice
username_0
Hi, 
I would like the output the mutation frequency from waterfall plot to a table, by gene instead of by sample. I am well aware of the argument (out) from function waterfall but i would like to output the subplot (% Mutant) by gene name instead of by sample name. 

I have been failed to export the desired data as by default, the data frame will be output by sample. I tried function writeData but since I am quite new to R, I failed to find out the reason for such error:
writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette 
                    = mycolors, clinData = Clin_Data1, maxGenes = 30,
                    rmvSilent = TRUE, fileType = "Custom", out = "data",
                    variant_class_order = mutation_priority), file("Test.csv"))
#> Error in writeData(waterfall(mutationData, mainRecurCutoff = 0.05, mainPalette = mycolors, : could not find function "writeData"

Is there a way the output the desired data frame by gene name and is the function writeData ready to use? Thank you in advance for any kind of suggestions!
Output mutation frequency by gene from waterfall plot
issue
closed
Sheneice
username_0
issue