lokahq/bioreason-rl huggingface dataset:
Protein: Cyclin/Brf1-like TBP-binding protein (Putative transcription factor) (Q0WVQ3)
Organism: Arabidopsis thaliana (Mouse-ear cress)
Function: Not known
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
InterPro domains:
- IPR013150: Transcription factor TFIIB, cyclin-like domain (domain) [72-260]
- IPR036915: Cyclin-like superfamily (homologous_superfamily) [75-261]
- IPR013763: Cyclin-like domain (domain) [76-262]
- IPR000812: Transcription factor TFIIB (family) [2-514]
- IPR011665: Brf1, TBP-binding domain (domain) [400-522]
Sequence:
MVWCNHCVKNVPGIRPYDGALACNLCGRILENFHFSTEVTFVKNAAGQSQASGNIVRSVQSGITSSRERRFRIARDELMNLKDALGIGDERDDVIVIAAKFFEMAVEQNFTKGRRTELVQASCLYLTCRELNIALLLIDFSSYLRVSVYELGSVYLQLCEMLYLVENRNYEKLVDPSIFMDRFSNSLLKGKNNKDVVATARDIIASMKRDWIQTGRKPSGICGAALYTAALSHGIKCSKTDIVNIVHICEATLTKRLIEFGDTDSGNLNVNELRERESHKRSFTMKPTSNKEAVLCMHQDSKPFGYGLCEDCYKDFINVSGGLVGGSNPPAFQRAEKERMEKAAREENEGGISSLNHDEQLYSDYCSMSKRGKQCSEKGEKDKDGAEEHADTSDESDNFSDISDDEVNGYINNEEETHYKTITWTEMNKDYLEEQAAKEAALKAASEALKASNSNCPEDARKAFEAAKADAAKSRKEKQQKKAEEAKNAAPPATAVEAVRRTLDKKRLSSVINYDVLESLFDTSAPEKSPKRSKTETDIEKKKEENKEMKSNEHENGENEDEDEEDEEEGNVESYDMKTDFQNGEKFYEEDEEEEEDGNDFGLY
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0055046 (microgametogenesis), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0048229 (gametophyte development), GO:0009555 (pollen development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Thioredoxin-like protein slr0233 (P52232)
Organism: Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Function: Not known
InterPro domains:
- IPR036249: Thioredoxin-like superfamily (homologous_superfamily) [7-102]
- IPR017937: Thioredoxin, conserved site (conserved_site) [22-40]
- IPR013766: Thioredoxin domain (domain) [1-105]
- IPR005746: Thioredoxin (family) [1-105]
Sequence:
MAVKKQFANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPVHRMEGVQQAAQLIQQLQVFV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0006457 (protein folding)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0031975 (envelope), GO:0042597 (periplasmic space), GO:0030313 (cell envelope), GO:0030288 (outer membrane-bounded periplasmic space)
Protein: DNA repair protein RecN (Recombination protein N) (Q9A6V0)
Organism: Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15) (Caulobacter crescentus)
Function: Not known
InterPro domains:
- IPR004604: DNA recombination/repair protein RecN (family) [1-568]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [1-566]
- IPR003395: RecF/RecN/SMC, N-terminal (domain) [15-524]
Sequence:
MLIGLSIRDVVLIESLDLAIGEGLTALTGETGAGKSIILDALGLATGARADAGLVRRGATGHASATAIFALPADHPAFAYLDDKGLSYARDEDVVLRRQLSPDGRSRAFVNDQATSVGVLKDLGALLLEVHGQHETVGLLDPKTHRGLLDTFGGVSLGAVASAWSAWRAARDRAEALRDLAGRAAAETEELTLRLSELDRLDPREGEEASLAEERALLSSAEKAMADIAAAQDALAGDNLSGRLAQAYRALERARDRALQAGAPAEGSAMTRLSAACEAVDRALVEAQEASAAIDAVAETFEFEPDRLEKAEERLFALRGMARKLNVLVDDLPAKRAEFAARLQAIETSEDSLRAAEKDAAEAREAYLYAAEALSAERRAAGDALAKAVEAELTPLKLEKARFRVAVEPLGEDRAGPSGLDRVAFEISTNPGAPFGAMEAIASGGELARFALALKAALAGRGGGPQPLMIFDEVDQGVGGAVADAVGLRLKRLAANAQVLVVTHSAQVAARGDAHWRISKSGDDTSTRTRVEPLSPAQREEEIARMLSGAEVTEAARAAARALLTLHA
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0009987 (cellular process), GO:0009605 (response to external stimulus), GO:0051716 (cellular response to stimulus), GO:0007154 (cell communication), GO:0006950 (response to stress), GO:0009991 (response to extracellular stimulus), GO:0071496 (cellular response to external stimulus), GO:0031668 (cellular response to extracellular stimulus), GO:0033554 (cellular response to stress), GO:0006974 (cellular response to DNA damage stimulus), GO:0009432 (SOS response)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0009295 (nucleoid), GO:0043229 (intracellular organelle), GO:0043590 (bacterial nucleoid), GO:0043228 (non-membrane-bounded organelle), GO:0043232 (intracellular non-membrane-bounded organelle)
Protein: Candida glabrata strain CBS138 chromosome F complete sequence (Q6FTY9)
Organism: Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) (Yeast) (Nakaseomyces glabratus)
Function: Not known
Subcellular location: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
InterPro domains:
- IPR036864: Zn(2)-C6 fungal-type DNA-binding domain superfamily (homologous_superfamily) [3-75]
- IPR031760: Centromere DNA-binding protein complex CBF3 subunit B, C-terminal (domain) [103-610]
- IPR001138: Zn(2)Cys(6) fungal-type DNA-binding domain (domain) [8-53]
- IPR050613: Secondary Metabolite Biosynthesis Regulators (family) [9-307]
Sequence:
MFQRPLPTKSNRPCSVCSKRKVKCDRLVPCGHCRKRGTESECVQSAISANKGNHESEKGYLSGLLRFWQSYEYWIPNIGLFKSQKLKYENNEVLDYLNVEAQFWESSITETGSYKLLNYTIENLGTLYFGCIGDVTELYKILEQYWDIKEDQSSKLPFSDSDKCYSRALLWSIFTMGVYYCPKELLDGIISIDKVRDFTKKQTLTEEQIRCKIYEGFITTTIDSLYRCNFMAQPDIRFIQTYIILSTTLYSFQFPIQANMILTNAMYVTKLLSATVISASNSEDIIGSIANESLNRLWYRICACDYIQEGPNKSIDFNRELGSLLKHAAYLEDLPSTDVYKEEDNYEILFWKLLSLDRDIDQYLNNGLKPPPKTLDAVQREVDIYTQKVSNLEEDQKSINSKFEKFLGHFILYTVSWKIQKLQIIFYDNKVSLNKLIRITKNIIKLLVKNFEHGHDTFNKHPLVIYYLSRVATFTNFYHIFENSVEIHEIVLDINELIVNLPPIFGNHLENLKYIIFRFTLLRKEFGKTDVVDTGGEFQHPVFKVLQNDVATISKSNNKLNYLLKGLGSLIPGKSIGEGIYEEDEDSMLDPTILEIVSEFEEKYPIDRVID
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050789 (regulation of biological process), GO:0065007 (biological regulation), GO:0048583 (regulation of response to stimulus), GO:0048584 (positive regulation of response to stimulus), GO:0032101 (regulation of response to external stimulus), GO:0002831 (regulation of response to biotic stimulus), GO:0002833 (positive regulation of response to biotic stimulus), GO:0032103 (positive regulation of response to external stimulus), GO:0080134 (regulation of response to stress), GO:0031349 (positive regulation of defense response), GO:1900426 (positive regulation of defense response to bacterium), GO:0031347 (regulation of defense response), GO:1900424 (regulation of defense response to bacterium)
Cellular Component (CC): GO:0005575 (cellular component), GO:0032991 (protein-containing complex), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0098687 (chromosomal region), GO:0140513 (nuclear protein-containing complex), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0000775 (chromosome, centromeric region), GO:0043228 (non-membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0043232 (intracellular non-membrane-bounded organelle), GO:0005694 (chromosome), GO:0005634 (nucleus)
Protein: Inner membrane protein YgjV (P42603)
Organism: Escherichia coli (strain K12)
Function: Not known
Subcellular location: Cell inner membrane; Multi-pass membrane protein.
InterPro domains:
- IPR026267: Inner membrane protein YgjV (family) [1-182]
- IPR019629: Uncharacterised protein family HI1736/YgjV (family) [5-163]
Sequence:
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPSAVDERG
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0005342 (organic acid transmembrane transporter activity), GO:1901702 (salt transmembrane transporter activity), GO:0015075 (monoatomic ion transmembrane transporter activity), GO:0008514 (organic anion transmembrane transporter activity), GO:0015318 (inorganic molecular entity transmembrane transporter activity), GO:0015144 (carbohydrate transmembrane transporter activity), GO:0022804 (active transmembrane transporter activity), GO:0022890 (inorganic cation transmembrane transporter activity), GO:0022853 (active monoatomic ion transmembrane transporter activity), GO:0046943 (carboxylic acid transmembrane transporter activity), GO:0008324 (monoatomic cation transmembrane transporter activity), GO:0015291 (secondary active transmembrane transporter activity), GO:0015293 (symporter activity), GO:0015078 (proton transmembrane transporter activity), GO:0015355 (secondary active monocarboxylate transmembrane transporter activity), GO:0015294 (solute:monoatomic cation symporter activity), GO:0008028 (monocarboxylic acid transmembrane transporter activity), GO:0015295 (solute:proton symporter activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0051179 (localization), GO:0051234 (establishment of localization), GO:0055085 (transmembrane transport), GO:0034219 (carbohydrate transmembrane transport), GO:0006810 (transport), GO:0015749 (monosaccharide transmembrane transport), GO:0071702 (organic substance transport), GO:0008645 (hexose transmembrane transport), GO:0008643 (carbohydrate transport), GO:1904659 (glucose transmembrane transport)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Neuronal pentraxin-2 (NP2) (Neuronal pentraxin II) (NP-II) (P47972)
Organism: Homo sapiens (Human)
Function: Likely to play role in the modification of cellular properties that underlie long-term plasticity. Binds to agar matrix in a calcium-dependent manner (By similarity).
Subcellular location: Secreted {ECO:0000250}.
InterPro domains:
- IPR030476: Pentaxin, conserved site (conserved_site) [311-318]
- IPR001759: Pentraxin-related (family) [219-424]
- IPR013320: Concanavalin A-like lectin/glucanase domain superfamily (homologous_superfamily) [242-419]
- IPR051360: Neuronal Pentraxin and Related (family) [107-427]
Sequence:
MLALLAASVALAVAAGAQDSPAPGSRFVCTALPPEAVHAGCPLPAMPMQGGAQSPEEELRAAVLQLRETVVQQKETLGAQREAIRELTGKLARCEGLAGGKARGAGATGKDTMGDLPRDPGHVVEQLSRSLQTLKDRLESLEHQLRANVSNAGLPGDFREVLQQRLGELERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSAFKSPDAFKVSLPLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPIELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGVLILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTNMPGNIIPWVDNNVDVFGGASKWPVETCEERLLDL
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0023052 (signaling), GO:0065007 (biological regulation), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0051716 (cellular response to stimulus), GO:0023051 (regulation of signaling), GO:0007154 (cell communication), GO:0007165 (signal transduction), GO:0050794 (regulation of cellular process), GO:0010646 (regulation of cell communication), GO:0007186 (G protein-coupled receptor signaling pathway), GO:0009966 (regulation of signal transduction), GO:0050804 (modulation of chemical synaptic transmission)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0030054 (cell junction), GO:0045202 (synapse), GO:0098978 (glutamatergic synapse)
Protein: GGDEF domain-containing protein (Q54R09)
Organism: Dictyostelium discoideum (Social amoeba)
Function: Not known
InterPro domains:
- IPR043128: Reverse transcriptase/Diguanylate cyclase domain (homologous_superfamily) [347-520]
- IPR000160: GGDEF domain (domain) [342-518]
- IPR052163: Diguanylate Cyclase/Regulatory Protein (family) [248-511]
- IPR029787: Nucleotide cyclase (homologous_superfamily) [358-508]
Sequence:
MEKSIQELFLSTLNIYSYINSGNPTSTLYKSQISNNKVNDTIDSTTYNHDNNNNNNNNNNNNNNNNNNYYINNNNNNNNYNYNNNYMQYNQMNNNSNLYITKDNMLFLLIVVVLIYTFIQRERKMLSETNTFKQILNYTPTLIVLEINFAQKVVNTINPVLTKSNSSNNLTQYLNTNTNTNTNTNTNNNENNNNNNINNNNNNNNNNSSNNNNNSSSNNINILNNNNILNKSVKIVNNNNNNSTEEFNNNNNNNSNNNNNNIEQTQTTSDKYFSIQSFCESLNIDPNDFVLALNNNSNNDEQDIQNSKGIVLKSIDGTKKYRFSGKCNKSVFRGLVLDISEEVSELKKLKYILAHDPLTGLPNRYRLDEKIQKFCNKSETDLCALYFMDLNKFKSINDTYGHEVGDLVLKHVSNQFKAQKDSNVLPIRLSGDEFLIIKRGVENVDHADHFISQFTKNVSSSSFTVDGESSSTILPIFFSYGGVVFKKSETKVSSIIKSADEKMYQMKKGISQINVVEFEKN
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0016772 (transferase activity, transferring phosphorus-containing groups), GO:0016779 (nucleotidyltransferase activity), GO:0052621 (diguanylate cyclase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0009605 (response to external stimulus), GO:0071840 (cellular component organization or biogenesis), GO:0009607 (response to biotic stimulus), GO:0051707 (response to other organism), GO:0050794 (regulation of cellular process), GO:0016043 (cellular component organization), GO:0043207 (response to external biotic stimulus), GO:0009617 (response to bacterium), GO:0030030 (cell projection organization), GO:0006996 (organelle organization), GO:0010256 (endomembrane system organization), GO:0007005 (mitochondrion organization), GO:0007030 (Golgi organization), GO:0120036 (plasma membrane bounded cell projection organization), GO:0044782 (cilium organization), GO:0007032 (endosome organization), GO:0031175 (neuron projection development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Uncharacterized protein C13E7.11 (O14364)
Organism: Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Function: Not known
Subcellular location: Membrane {ECO:0000305}; Multi-pass membrane protein {ECO:0000305}.
InterPro domains:
- IPR035952: Rhomboid-like superfamily (homologous_superfamily) [73-276]
- IPR022764: Peptidase S54, rhomboid domain (domain) [122-271]
- IPR050925: Rhomboid protease S54 (family) [56-271]
Sequence:
MNRLNFQSLLWKFGQKRFYYRPWIRIENIKPTPLWKPITFAVGVGSATFYTANYLDKRRKNYPKSSYGFPIPQTSSRSLVLSIIGINVGVFALWRAPRFSHLNRFLQKYAVMNPIFINMPSMIVSAFSHQSGWHLLFNMVAFYSFAPAIVDVFGNNQFVAFYISSILFSNVASLLHHRLRFGTKVTPGSLGASGAIYAIAAATSYFFPNASVSIIFLPFIPIKIGVALLGLMAFDAWGLISRGFSSFANFTLIDHAAHLGGGIFGWLYAKYGYSTYNRSTRPRPPSLSKPFFSRSVSF
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0140096 (catalytic activity, acting on a protein), GO:0016787 (hydrolase activity), GO:0017171 (serine hydrolase activity), GO:0008233 (peptidase activity), GO:0008236 (serine-type peptidase activity), GO:0004175 (endopeptidase activity), GO:0004252 (serine-type endopeptidase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0008152 (metabolic process), GO:0009987 (cellular process), GO:0071840 (cellular component organization or biogenesis), GO:0071704 (organic substance metabolic process), GO:0044238 (primary metabolic process), GO:0006807 (nitrogen compound metabolic process), GO:0016043 (cellular component organization), GO:1901564 (organonitrogen compound metabolic process), GO:0019538 (protein metabolic process), GO:0043170 (macromolecule metabolic process), GO:0051604 (protein maturation), GO:0006508 (proteolysis), GO:0006996 (organelle organization), GO:0010467 (gene expression), GO:0007005 (mitochondrion organization), GO:0048284 (organelle fusion), GO:0016485 (protein processing), GO:0008053 (mitochondrial fusion)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0005739 (mitochondrion), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: Protein kinase, putative (C4MBQ2)
Organism: Entamoeba histolytica (strain ATCC 30459 / HM-1:IMSS / ABRM)
Function: Not known
InterPro domains:
- IPR011009: Protein kinase-like domain superfamily (homologous_superfamily) [198-449]
- IPR001849: Pleckstrin homology domain (domain) [10-107]
- IPR000719: Protein kinase domain (domain) [198-448]
- IPR000095: CRIB domain (domain) [105-160]
- IPR017441: Protein kinase, ATP binding site (binding_site) [204-227]
- IPR051931: Serine/threonine-protein kinase PAK 3-like (family) [119-464]
- IPR036936: CRIB domain superfamily (homologous_superfamily) [106-176]
- IPR011993: PH-like domain superfamily (homologous_superfamily) [3-105]
Sequence:
MSTPYSSIRNIIKEGCVVKQGHIIWNWYNRWLVLTKEQLYYYDESKQKLRGTVPLDFASVKSCEIEDHPFSFEVYCPTQNKTYFFEALSEEERTSWIKKISEVVDISEPTDYHHLTHVAYEEGGFVGIPYEWENVFLACGITREEIKSNKEDAIKVLEFTQIFQDDETEETQKQPLPENDVPVVLKELITSGDPTVLYKDYVPIGEGMSGVVFHCYETSTNKEVAMKKILIKNDSVNIQEIKIMQTLNQRNIVGYLGCYELDNYLYIAMEYMDRNNLTAMLDFFPEFSLSERHIAYVVHESNTALKYLHSLHRIHRDIKSDNILLNHRGEIKLADFGISVQLTKRKSKRNTVVGTPYWMAPEVIKGKDYGTNIDIWSLGIMCREMMEGVPPYIDDPPLRALFKISTKGIPPVQYGDYTPTILDFVDKCLTFDPTKRPDCEELDKDPFMSLACSREEFAEFIQKIVQQAEK
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0050789 (regulation of biological process), GO:0048519 (negative regulation of biological process), GO:0048583 (regulation of response to stimulus), GO:0023051 (regulation of signaling), GO:0023056 (positive regulation of signaling), GO:0023057 (negative regulation of signaling), GO:0051239 (regulation of multicellular organismal process), GO:0048584 (positive regulation of response to stimulus), GO:0048523 (negative regulation of cellular process), GO:0048585 (negative regulation of response to stimulus), GO:0050794 (regulation of cellular process), GO:0048522 (positive regulation of cellular process), GO:0009967 (positive regulation of signal transduction), GO:0010647 (positive regulation of cell communication), GO:0009968 (negative regulation of signal transduction), GO:0010648 (negative regulation of cell communication), GO:0009966 (regulation of signal transduction), GO:0010646 (regulation of cell communication), GO:1902533 (positive regulation of intracellular signal transduction), GO:1902531 (regulation of intracellular signal transduction), GO:0043408 (regulation of MAPK cascade), GO:0043410 (positive regulation of MAPK cascade)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure), GO:0071944 (cell periphery), GO:0005737 (cytoplasm), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Sigma factor regulatory protein PupR (Q4KDP8)
Organism: Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Function: Not known
InterPro domains:
- IPR006860: FecR protein (domain) [133-224]
- IPR032623: FecR, N-terminal (domain) [33-75]
- IPR012373: Fe(2+)-dicitrate sensor, transmembrane component (family) [22-340]
Sequence:
MHPSRRQPGLAVNHPLSSNANAEPQSIDIAMAEQAMQWQLDLQEPQVSAATLAAWHRWRQAHPLHEKAWQRAETLAQRLQQVRSQGHSELARATLVPNLGRRRALKQLGLLLVTGAGAWAARDTALVQDWSADYSTRVGQQRRITLADQTRVQLNTDTAIALRFDREQRRIKLLRGELLLTLARQDSLPALHVETAEGWIETSTARFSVRQLAGRTELSVYQGNLTLRPRDGGQPALSLGAGEQARFNRQGLLLRQAQNATQPAWSQGMLVAQGQALAQFLEELGRYRHGHLGCDPSLAQLKVSGTFPLADTDRVLFAVARTLQLEVRQFTRYWVTLKPRTALS
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0140110 (transcription regulator activity), GO:0003712 (transcription coregulator activity), GO:0003714 (transcription corepressor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0051179 (localization), GO:0050789 (regulation of biological process), GO:0051234 (establishment of localization), GO:0019222 (regulation of metabolic process), GO:0050794 (regulation of cellular process), GO:0060255 (regulation of macromolecule metabolic process), GO:0031323 (regulation of cellular metabolic process), GO:0080090 (regulation of primary metabolic process), GO:0006810 (transport), GO:0009889 (regulation of biosynthetic process), GO:0051171 (regulation of nitrogen compound metabolic process), GO:0019219 (regulation of nucleobase-containing compound metabolic process), GO:0051252 (regulation of RNA metabolic process), GO:0010556 (regulation of macromolecule biosynthetic process), GO:0010468 (regulation of gene expression), GO:0031326 (regulation of cellular biosynthetic process), GO:2001141 (regulation of RNA biosynthetic process), GO:0006355 (regulation of DNA-templated transcription), GO:1903506 (regulation of nucleic acid-templated transcription)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)