Protein: Suppression of tumorigenicity 18 protein (C2-HC type zinc finger protein r-MyT3) (Neural zinc finger factor 3) (NZF-3) (Q9QX27)
Organism: Rattus norvegicus (Rat)
Function: Repressor that binds to DNA sequences containing a bipartite element consisting of a direct repeat of the sequence 5'-AAAGTTT-3' separated by 2-9 nucleotides. Represses basal transcription activity from target promoters.
Subcellular location: Nucleus {ECO:0000269|PubMed:9478997}.
InterPro domains:
- IPR036060: Zinc finger, C2H2C-type superfamily (homologous_superfamily) [350-890]
- IPR002515: Zinc finger, C2H2C-type (repeat) [344-888]
- IPR013681: Myelin transcription factor 1 (domain) [465-700]
Sequence:
MQRLKIKRCILSQKEPKVAYDCSMAKKRRAEEQALGVPVNKRKSLLMKPRHYSPDMDCKENPDNRNEDDGLETNDHSTADEIVVKPMDKTLHLPAQESSLPKEDQYACYPELMVKSLMHLGKFEESESVQTVGENLNGNGIQSLKAECDEANECFMVHSDDGRDKVHHSQPPFCSSGDSESDSDNTENGWGSGSNSSEDTDTHKGPKRKLTYNRKDLLEVPEIKAEDDKFIPCENRCDSDTSGRDPQNSHMEPLAVKVQPSFPEVEESESLATVIAESAEVEKAKGSLSLLEQAIALQAERGSVFHHTYKELDRFLLDHLARQRRQPKVTDASGRQIFNNKHSPRPERREAKCPIPGCDGTGHVTGLYPHHRSLSGCPHKVRVPLEILAMHENVLKCPTPGCTGRGHVNSNRNTHRSLSGCPIAAAEKLAMTQDKSQLDSSQTGQGPEQAHRVNLVKQIEFNFRSQAITSPRASASKEQEKFGKVPFDYASFDAQVFGKRPLLQTGQGQKAPPFPESKHFSNPVKFSNGLPSAGAHTQSTVRASSYGHGQYSEDTHIAAAAAILNLSTRCREATDILSNKPQSLRAKGAEIEVDENGTLDLSMKKNRILDKSIPPTSSHTTIATPSSSPFKASSLLVNAAFYQALCDQEGWNVPINYSKSHGKTEEEKEKDPVNSLENLEEKKFAGEASIPSPKPKLHTRDLKKELITCPTPGCDGSGHVTGNYASHRSVSGCPLADKTLKSLMAANSQELKCPTPGCDGSGHVTGNYASHRSLSGCPRARKGGIKMTPTKEEKEDSELRCPVIGCDGQGHISGKYTSHRTASGCPLAAKRQKENPLNGTPLSWKLNKQELPHCPLPGCNGLGHVNNVFVTHRSLSGCPLNAQAIKKVKVSEELMTIKLKATGGIEGDEEIRHLDEEIKELNESNLKIEADMMKLQTQITSMESNLKTIEEENKLIEQSNESLLKELAGLSQALISSLADIQLPQMGPINEQNFEAYVNTLTDMYSNLERDYSPECKALLESIKQAVKGIHV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0140110 (transcription regulator activity), GO:1901363 (heterocyclic compound binding), GO:0003700 (DNA-binding transcription factor activity), GO:0097159 (organic cyclic compound binding), GO:0043167 (ion binding), GO:0003676 (nucleic acid binding), GO:0001216 (DNA-binding transcription activator activity), GO:0043169 (cation binding), GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific), GO:0046872 (metal ion binding), GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003677 (DNA binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0046914 (transition metal ion binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding), GO:0000987 (cis-regulatory region sequence-specific DNA binding), GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding), GO:0008270 (zinc ion binding), GO:0050897 (cobalt ion binding), GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0051179 (localization), GO:0048518 (positive regulation of biological process), GO:0050789 (regulation of biological process), GO:0048522 (positive regulation of cellular process), GO:0019222 (regulation of metabolic process), GO:0051235 (maintenance of location), GO:0050794 (regulation of cellular process), GO:0009893 (positive regulation of metabolic process), GO:0010604 (positive regulation of macromolecule metabolic process), GO:0031325 (positive regulation of cellular metabolic process), GO:0009889 (regulation of biosynthetic process), GO:0051171 (regulation of nitrogen compound metabolic process), GO:0060255 (regulation of macromolecule metabolic process), GO:0051238 (sequestering of metal ion), GO:0031323 (regulation of cellular metabolic process), GO:0080090 (regulation of primary metabolic process), GO:0009891 (positive regulation of biosynthetic process), GO:0051173 (positive regulation of nitrogen compound metabolic process), GO:0010557 (positive regulation of macromolecule biosynthetic process), GO:0045935 (positive regulation of nucleobase-containing compound metabolic process), GO:0051254 (positive regulation of RNA metabolic process), GO:0010556 (regulation of macromolecule biosynthetic process), GO:0031326 (regulation of cellular biosynthetic process), GO:0019219 (regulation of nucleobase-containing compound metabolic process), GO:0051252 (regulation of RNA metabolic process), GO:0031328 (positive regulation of cellular biosynthetic process), GO:0010468 (regulation of gene expression), GO:1902680 (positive regulation of RNA biosynthetic process), GO:2001141 (regulation of RNA biosynthetic process), GO:0006355 (regulation of DNA-templated transcription), GO:0006357 (regulation of transcription by RNA polymerase II), GO:0045893 (positive regulation of DNA-templated transcription), GO:1903508 (positive regulation of nucleic acid-templated transcription), GO:1903506 (regulation of nucleic acid-templated transcription), GO:0045944 (positive regulation of transcription by RNA polymerase II)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0032993 (protein-DNA complex), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)