lokahq/bioreason-rl huggingface dataset:
Protein: RNA-binding protein Musashi homolog 2 isoform X5 (A0A8M9QBW9)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR000504: RNA recognition motif domain (domain) [21-187]
- IPR034126: RNA-binding protein Musashi homologue, RNA recognition motif 2 (domain) [111-184]
- IPR035979: RNA-binding domain superfamily (homologous_superfamily) [20-226]
- IPR012677: Nucleotide-binding alpha-beta plait domain superfamily (homologous_superfamily) [21-197]
Sequence:
MEGDGSQATSGSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFAPSYSYQFPGFPATAYGPVAAAAAVAAARGSGRGARGRGGYAAYPQSTGPGFPDYGFYSSPSDQRGPPFSFADYGSLGPQAAQLLQSEHATSACNSPLQHLASPDQYKSPEFIRRPGEDWPEFLIGSVYR
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding), GO:0003730 (mRNA 3'-UTR binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0021537 (telencephalon development), GO:0060322 (head development), GO:0021988 (olfactory lobe development), GO:0030900 (forebrain development), GO:0021772 (olfactory bulb development), GO:0048731 (system development), GO:0048513 (animal organ development), GO:0007420 (brain development), GO:0007417 (central nervous system development), GO:0007399 (nervous system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Protrudin (A0A8M2B732)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cell projection, growth cone membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein. Endosome membrane; Multi-pass membrane protein. Membrane; Multi-pass membrane protein. Recycling endosome membrane; Multi-pass membrane protein
InterPro domains:
- IPR017455: Zinc finger, FYVE-related (domain) [360-426]
- IPR000306: FYVE zinc finger (domain) [352-427]
- IPR013083: Zinc finger, RING/FYVE/PHD-type (homologous_superfamily) [365-428]
- IPR042405: Protrudin (family) [12-426]
- IPR011011: Zinc finger, FYVE/PHD-type (homologous_superfamily) [339-425]
Sequence:
MQCSASSPQEPPQASAERPELTQLPTKDPSCADSASDPGSPKALTFDLLNMVICFKRMLIFLEPITDTLEVLRYLLGWKMPLFSLLSCVLLNILFLTLTEGSWFSLLLLAISAPAVLGFLGDRCQGASSEMALQKKKHYAVQRRDLQTVHMSKQEAMLEVKGMLKQIDDLLTQACVYAESVYKVLYWESHAVSSMFYGFLLTAVCLLYTAPVGVSLSVINSALFLWNRDFCRVLLKLKEFVHPTYVEPVEETELCDSDQANLLERTPTPTSVEDLSPGNIEEAEEAEPDDEFKDAIEVWPVVYLLPKVLKRWRARKDDEDVSSGVPEFDTVSDNGLLSRNEPIRSKVSKLTEKLRKRVPTNATGNCVQCNSAFSVLKKRRNCSNCGISFCSRCCSYKVFRSTMGATAPEAQRETVFVCSTCNTFLSTK
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0071840 (cellular component organization or biogenesis), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0032989 (cellular component morphogenesis), GO:0000902 (cell morphogenesis), GO:0016043 (cellular component organization), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0048731 (system development), GO:0022008 (neurogenesis), GO:0000904 (cell morphogenesis involved in differentiation), GO:0030030 (cell projection organization), GO:0007399 (nervous system development), GO:0048858 (cell projection morphogenesis), GO:0030182 (neuron differentiation), GO:0032990 (cell part morphogenesis), GO:0048666 (neuron development), GO:0048667 (cell morphogenesis involved in neuron differentiation), GO:0120039 (plasma membrane bounded cell projection morphogenesis), GO:0120036 (plasma membrane bounded cell projection organization), GO:0031175 (neuron projection development), GO:0048699 (generation of neurons), GO:0048812 (neuron projection morphogenesis), GO:0061564 (axon development), GO:0007409 (axonogenesis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0012505 (endomembrane system), GO:0005794 (Golgi apparatus), GO:0005783 (endoplasmic reticulum), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)
Protein: Tropomyosin beta chain isoform X6 (A0A8M2B2D1)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cytoplasm, cytoskeleton
InterPro domains:
- IPR000533: Tropomyosin (family) [8-247]
Sequence:
MASITSIEAVKRKIQTLQQQADDAEDRAEMLQREVDLERQCRERAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRATKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERSEERAEVAEARVRQLEEELRLMDQNLKSMMAGEEEYSTKEDKYEEEIRVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKLKGKALSEELDLALNDMTTL
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0044877 (protein-containing complex binding), GO:0005515 (protein binding), GO:0051015 (actin filament binding), GO:0008092 (cytoskeletal protein binding), GO:0003779 (actin binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0071840 (cellular component organization or biogenesis), GO:0009653 (anatomical structure morphogenesis), GO:0030029 (actin filament-based process), GO:0048646 (anatomical structure formation involved in morphogenesis), GO:0032989 (cellular component morphogenesis), GO:0016043 (cellular component organization), GO:0061061 (muscle structure development), GO:0044085 (cellular component biogenesis), GO:0030036 (actin cytoskeleton organization), GO:0010927 (cellular component assembly involved in morphogenesis), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0022607 (cellular component assembly), GO:0042692 (muscle cell differentiation), GO:0006996 (organelle organization), GO:0030239 (myofibril assembly), GO:0031032 (actomyosin structure organization), GO:0055001 (muscle cell development), GO:0097435 (supramolecular fiber organization), GO:0070925 (organelle assembly), GO:0007010 (cytoskeleton organization), GO:0014866 (skeletal myofibril assembly), GO:0051146 (striated muscle cell differentiation), GO:0055002 (striated muscle cell development), GO:0140694 (non-membrane-bounded organelle assembly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0030017 (sarcomere), GO:0005737 (cytoplasm), GO:0036379 (myofilament), GO:0099080 (supramolecular complex), GO:0099081 (supramolecular polymer), GO:0043292 (contractile fiber), GO:0043229 (intracellular organelle), GO:0005865 (striated muscle thin filament), GO:0043228 (non-membrane-bounded organelle), GO:0099512 (supramolecular fiber), GO:0030016 (myofibril), GO:0043232 (intracellular non-membrane-bounded organelle), GO:0005856 (cytoskeleton), GO:0015629 (actin cytoskeleton)
Protein: RAS guanyl-releasing protein 1 isoform X2 (A0A8M3AJR7)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR036964: Ras guanine-nucleotide exchange factor, catalytic domain superfamily (homologous_superfamily) [185-454]
- IPR002219: Protein kinase C-like, phorbol ester/diacylglycerol-binding domain (domain) [535-585]
- IPR008937: Ras-like guanine nucleotide exchange factor (family) [50-433]
- IPR001895: Ras guanine-nucleotide exchange factors catalytic domain (domain) [193-429]
- IPR018247: EF-Hand 1, calcium-binding site (binding_site) [475-487]
- IPR011992: EF-hand domain pair (homologous_superfamily) [452-523]
- IPR000651: Ras-like guanine nucleotide exchange factor, N-terminal (domain) [48-173]
- IPR002048: EF-hand domain (domain) [462-497]
- IPR023578: Ras guanine nucleotide exchange factor domain superfamily (homologous_superfamily) [52-454]
- IPR020454: Diacylglycerol/phorbol-ester binding (domain) [533-586]
- IPR046349: C1-like domain superfamily (homologous_superfamily) [523-585]
Sequence:
MGFDTMNRKESKSRKSRQEGGIKSRRPVQRRMTCPSAQEISRALQSPPAHASFRSASLDELILRCLHCFDSDGKLNRGTQLVSMTLMMHNWVVPSHIFAHKLLSLYKDCPAEKRGQRRPQICHFIRQWISQFRLMFEMDPLLEKAMGDLWALVSAEGTNSHHQLINTPYINPPVNISQTPSPLVKKRKVSLLFDHMEPDEMAEHLSYLEFKNFCNVSFLDYRSYVVHGSVRDNPALERSVMLCNGVSQWVQLMILNRHTSQQRAEVFTKFIHVAQKLRSLQNFNTLMAVIGGLCHSSISRLKDTASLLSSDVTKTLSELTELLSSYSNYSNYRRVYSECTGFKVPILGVHLKDLISLNEALPDYLEDDKINLGKLQHLYSNISDLLAIHDCTPPFEANKDLLHLLTLSLDLYYTEDEIYELSYAKEPKNPKIQPVAPVKPPVVAEWGSGVTPRLDPATISKHVKQMVDSIMKNYDLNMDGYISLEEFEKIAANFPFSFCTHESDREGEISREEITSYFMRGMSVCAKLGFNLHNLHNFHETTYKRPTFCDTCGGFLWGVIKQGYHCKDCGVNCHKHCKDVVGMECLKRLQVNSSSCPCTPGPVSGLHTKGNSWSEFSQSFQSGSEEEAFVFPNGNESEHSKGQTSSDSDAEAATLSDRSTQTEPGVWTPVAKRKDRLHSQKQHPPLEKSATLPARVRGSSAPSSLLQEKMDELKLNKDKRKEPD
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0098772 (molecular function regulator activity), GO:0030234 (enzyme regulator activity), GO:0140677 (molecular function activator activity), GO:0140678 (molecular function inhibitor activity), GO:0060589 (nucleoside-triphosphatase regulator activity), GO:0005085 (guanyl-nucleotide exchange factor activity), GO:0030695 (GTPase regulator activity)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0001945 (lymph vessel development), GO:0048731 (system development), GO:0001944 (vasculature development), GO:0072359 (circulatory system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure), GO:0071944 (cell periphery), GO:0005737 (cytoplasm), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Aftiphilin isoform X2 (A0A8M1PV90)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR029205: Aftiphilin, clathrin-binding box (domain) [517-585]
- IPR046359: Aftiphilin-like (family) [1-696]
Sequence:
MEPDVVRLYSSSPPPLDETGEEEEEDEFGEFGGFDGGGVSSSFSLSELDTPTTYDQSNALEDSPPDLIIKCTQNIIVSENNGWTNEKERETESISSFGIAEKESSGILTNGMTSSDLQVELSDRSDQNSPSMGSDVQNSSTGDEHSLSNGYSESCSNSDLDQSLHNCLQSTHIEVNYGRDASIADVLDKSRITDKLPDSNNHSSCTEACELRDTEAGMEICGNSQFLSSCRDAQEVEGEQDQSENCFAADCLEESMDHVDKAEAETVSSVDADLISDMQLSGDTIEIHGSFANSEVGIDADVETSADPTADEDFCDFRDATQGFTDFSRTESMTQEGLPEFVTAMSRCSTDDDFGDTDTLKDFKEEDELAEEMAGEEGGFCSELPPSDSFADFSSAPFEGAAGGEDDGWAAFAPRESPKGDQDSWATFGEEQSTYAGKEEQDVETSSAPSREDIQSSTVDFSCKIQHLFKTAFPLDVHAEVSEVTEVLPLHKFLPAQDPQEQRDPSSSFFAQENALVMWRHLQDILGSHGLKFKWAGSHSNRILLNCLGIRNILFTGDKNQPLIVPMFAAGLGMLEPTKESQKSPASPALCPSAPLESGNILCTQVAPSLAISIDGVDPEIYELTTAKMENNTTGRNIADAFTKLMESIEKTKPTVRKPETDEEMSEEAAKVISLLPDLSFMKARVLMFPSILTPAANHT
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0007017 (microtubule-based process), GO:0007018 (microtubule-based movement), GO:0003341 (cilium movement)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005622 (intracellular anatomical structure)
Protein: Neurotrimin isoform X5 (A0A8M9QKR6)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cell membrane; Lipid-anchor, GPI-anchor. Membrane; Lipid-anchor, GPI-anchor
InterPro domains:
- IPR013098: Immunoglobulin I-set (domain) [39-310]
- IPR013783: Immunoglobulin-like fold (homologous_superfamily) [34-309]
- IPR003598: Immunoglobulin subtype 2 (domain) [47-300]
- IPR050876: IgLON domain-containing protein (family) [31-311]
- IPR036179: Immunoglobulin-like domain superfamily (homologous_superfamily) [40-312]
- IPR007110: Immunoglobulin-like domain (domain) [15-305]
- IPR003599: Immunoglobulin domain subtype (domain) [41-311]
Sequence:
MKMVVCGCWRRCVVMGLRLLFLLPAGLPVRSQGESQSDNKQMDNITIRQGETLFLSCSQGDFVTHTAWLNRSSILYAGEDKWSVDPRVSLVTLSQEEFTIKIEDVDVTDEGQYICAVQTSSRPRTTSVHIIVQVPPKIVNLSRDLVVNEGSNVTLMCLANGKPEPAIVWRMKSPSDDSLSSDSEVLDIPFISRYRAGVYECTAANDIAVDTQTVELTVNYAPSVSDGRDVGVTLGQRGVLQCEADAVPEADFEWYRDDRRIFNGLDGIEIEAAGALSRLTFFNVSEADYGNYTCVAINKLGSANTSFVLYVQDGNSGTSTVFNPFCLLIAILQLLLKF
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0042802 (identical protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0007155 (cell adhesion), GO:0071840 (cellular component organization or biogenesis), GO:0007610 (behavior), GO:0032989 (cellular component morphogenesis), GO:0000902 (cell morphogenesis), GO:0001966 (thigmotaxis), GO:0009888 (tissue development), GO:0098609 (cell-cell adhesion), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0048731 (system development), GO:0016043 (cellular component organization), GO:0007626 (locomotory behavior), GO:0022008 (neurogenesis), GO:0000904 (cell morphogenesis involved in differentiation), GO:0030030 (cell projection organization), GO:0007399 (nervous system development), GO:0032990 (cell part morphogenesis), GO:0007417 (central nervous system development), GO:0060429 (epithelium development), GO:0048858 (cell projection morphogenesis), GO:0034330 (cell junction organization), GO:0030182 (neuron differentiation), GO:0048666 (neuron development), GO:0048667 (cell morphogenesis involved in neuron differentiation), GO:0031175 (neuron projection development), GO:0048699 (generation of neurons), GO:0050808 (synapse organization), GO:0120039 (plasma membrane bounded cell projection morphogenesis), GO:0120036 (plasma membrane bounded cell projection organization), GO:0007528 (neuromuscular junction development), GO:0048812 (neuron projection morphogenesis), GO:0061564 (axon development), GO:0007409 (axonogenesis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Paired box 7 isoform X1 (A0A8M3B4A0)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
- IPR022106: Paired box protein 7, C-terminal (domain) [338-381]
- IPR043565: PAX family (family) [30-445]
- IPR017970: Homeobox, conserved site (conserved_site) [248-271]
- IPR009057: Homedomain-like superfamily (homologous_superfamily) [36-279]
- IPR003654: OAR domain (domain) [476-488]
- IPR001523: Paired domain (domain) [34-161]
- IPR001356: Homeodomain (domain) [213-277]
- IPR036388: Winged helix-like DNA-binding domain superfamily (homologous_superfamily) [34-168]
- IPR043182: Paired DNA-binding domain (domain) [68-84]
Sequence:
MATLPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKRIEEYKRENPGMFSWEIRDKLLKDGVCDRGTVPSVSSISRVLRARFGKKDDDDECDKKDEDGEKKTKHSIDGILGDKGNRTDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPTYQLPESTYPSTTLSQDGSSTLHRPQPLPPSSMHQGGLSADSGSAYGLSSNRHTFSSYSETFMSPTASSNHMNPVSNGLSPQVMSILSNPSAVPSQPQHDFSISPLHGGLEASNPISASCSQRSDPIKSVDSLASTQSYCPPTYSATSYSVDPVTAGYQYSQYGQTAVDYLAKNVSLSTQRRMKLGDHSAVLGLLQVETGQAY
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0065007 (biological regulation), GO:0043473 (pigmentation), GO:0048066 (developmental pigmentation), GO:0050793 (regulation of developmental process), GO:0050794 (regulation of cellular process), GO:0006950 (response to stress), GO:0009611 (response to wounding), GO:0045595 (regulation of cell differentiation), GO:0042060 (wound healing)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Transcription factor SOX-5 isoform X4 (A0A8M2BC41)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
- IPR051356: SOX/SOX-like transcription factors (family) [14-756]
- IPR009071: High mobility group box domain (domain) [556-626]
- IPR036910: High mobility group box domain superfamily (homologous_superfamily) [551-634]
Sequence:
MLTEPELPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSKVSPRSPRLLDSPPTLHANMDQDGSKGLALSPYAQHNSSTSPSKQQQEDSSMRPGSEPGSASALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFGEIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNYKPGCSEPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQANLATGTLSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPASPQVPALKLGPGSLKHSAPSSIGGPPSRLSSIDLLSSITSAGYLNDHEAVTKAFQEARKMKEQLKREEQVLDAKVAAVNSLSLNNGRSEKEKAALESLSQQLKQSEESKFTHAMMDFGISGDSDGSPSVSDSRIFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPTSQASYFKEVEPRVKEELRMDDGNGDAYDDFDYEDDDGDYGSDSENHITQ
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0043473 (pigmentation), GO:0048869 (cellular developmental process), GO:0048066 (developmental pigmentation), GO:0050931 (pigment cell differentiation), GO:0030154 (cell differentiation), GO:0030318 (melanocyte differentiation)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: ELAV-like protein (A0A8M6Z446)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR002343: Paraneoplastic encephalomyelitis antigen (family) [38-202]
- IPR006548: Splicing factor ELAV/Hu (family) [35-227]
- IPR012677: Nucleotide-binding alpha-beta plait domain superfamily (homologous_superfamily) [27-352]
- IPR034915: HuC, RNA recognition motif 3 (domain) [268-352]
- IPR003954: RNA recognition motif domain, eukaryotic-type (domain) [38-343]
- IPR000504: RNA recognition motif domain (domain) [38-347]
- IPR035979: RNA-binding domain superfamily (homologous_superfamily) [32-349]
Sequence:
MVTIISTMETQVSNGPSGTSLPNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFSSLSVLPRFSPITIDSMTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHKA
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding), GO:0003730 (mRNA 3'-UTR binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050789 (regulation of biological process), GO:0065007 (biological regulation), GO:0050793 (regulation of developmental process), GO:0050794 (regulation of cellular process), GO:0051239 (regulation of multicellular organismal process), GO:0045595 (regulation of cell differentiation), GO:2000026 (regulation of multicellular organismal development), GO:0051960 (regulation of nervous system development), GO:0060284 (regulation of cell development), GO:0050767 (regulation of neurogenesis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:0042995 (cell projection), GO:0120025 (plasma membrane bounded cell projection), GO:0043005 (neuron projection), GO:0030424 (axon)
Protein: Paired mesoderm homeobox protein 1 isoform X1 (A0A8M2B7I0)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
- IPR009057: Homedomain-like superfamily (homologous_superfamily) [92-159]
- IPR043378: Paired mesoderm homeobox protein 1/2 (family) [3-206]
- IPR001356: Homeodomain (domain) [94-158]
- IPR017970: Homeobox, conserved site (conserved_site) [129-152]
Sequence:
MTSSYAHVMDRQATISSRLESPITANLENLQAKKNFSVSHLLDLEEAREMVGSQVDESVGETGRTMLESPGLTSGSDTTQQENEQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSYSGDVTAVEQPIVPRPAPRPNDYLSWGSAAPYSWYPRPEGGPMRVPQKMLPTETPWQPTHPLVPTPLPPRE
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0140110 (transcription regulator activity), GO:0097159 (organic cyclic compound binding), GO:0003700 (DNA-binding transcription factor activity), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific), GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050789 (regulation of biological process), GO:0032502 (developmental process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0009893 (positive regulation of metabolic process), GO:0019222 (regulation of metabolic process), GO:0048856 (anatomical structure development), GO:1904888 (cranial skeletal system development), GO:0010604 (positive regulation of macromolecule metabolic process), GO:0060255 (regulation of macromolecule metabolic process), GO:0010628 (positive regulation of gene expression), GO:0010468 (regulation of gene expression)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)