lokahq/bioreason-rl huggingface dataset:
Protein: Voltage-gated potassium channel subunit beta-2 (A0A8M9PT49)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cell projection, axon. Cytoplasm, cytoskeleton. Membrane; Peripheral membrane protein; Cytoplasmic side. Synapse, synaptosome
InterPro domains:
- IPR023210: NADP-dependent oxidoreductase domain (domain) [49-366]
- IPR005401: Potassium channel, voltage-dependent, beta subunit, KCNAB2 (family) [1-365]
- IPR005983: Potassium channel, voltage-dependent, beta subunit, KCNAB (family) [36-367]
- IPR036812: NAD(P)-dependent oxidoreductase domain superfamily (homologous_superfamily) [33-373]
- IPR005399: Potassium channel, voltage-dependent, beta subunit, KCNAB-related (family) [29-379]
Sequence:
MYPEPNTDSPARLSTRQSGSPYTARYGSPKRQLQFYRNLGKSGLRVSCLGLGTWVTFGGQITDEIAEQLMTLAYENGINLFDTAEVYAAGKAEMVLGSIIKKKGWRRSSLVITTKIYWGGKAETERGLSRKHIIEGLRASLERLQLEYVDVVFANRPDPNTPMEGDPFNTSKSRTFIIEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPVCEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIISGKYDSGVPPCSRASLKGYQWMKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSCVLLGASSTDQLMENIGAIQVLPKLSSSIIHEVDSILGNKPYSKKDYRS
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016740 (transferase activity), GO:0016491 (oxidoreductase activity), GO:0016614 (oxidoreductase activity, acting on CH-OH group of donors), GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor), GO:0015459 (potassium channel regulator activity), GO:0004033 (aldo-keto reductase (NADP) activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050789 (regulation of biological process), GO:0065007 (biological regulation), GO:0065008 (regulation of biological quality), GO:0098900 (regulation of action potential), GO:0051239 (regulation of multicellular organismal process), GO:0050794 (regulation of cellular process), GO:0010646 (regulation of cell communication), GO:0042391 (regulation of membrane potential), GO:0044057 (regulation of system process), GO:0051969 (regulation of transmission of nerve impulse), GO:0031644 (regulation of nervous system process)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0098796 (membrane protein complex), GO:1990351 (transporter complex), GO:0098797 (plasma membrane protein complex), GO:1902495 (transmembrane transporter complex), GO:0005886 (plasma membrane), GO:0034702 (ion channel complex), GO:0008076 (voltage-gated potassium channel complex), GO:0034703 (cation channel complex), GO:0034705 (potassium channel complex)
Protein: Transcription factor Sp1 isoform X1 (A0A8M6Z917)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR036236: Zinc finger C2H2 superfamily (homologous_superfamily) [440-496]
- IPR013087: Zinc finger C2H2-type (domain) [427-514]
Sequence:
MADSEPGFPQKSSSSSAQDSQQPSPLALLAATCSRIDENGAAEPQTRQDSQLELPQGTNGWHISPAGTQTPTSAPAAVPTAPSEERSRAATATIQPQFLMPAQSQQLLTALPGVMPNIQYQVIPQFQTVDGQQLQLQAAQDMSGQLLVSSPGGQQLRAAGSGNILTVPGLFQQAIPLQNLSAVLPNQTQFLANVPLNANITLLPVGPGPVGGDTHTAVAAPPQGPEFCSTASSTRATAAVGIATLAQSRAPAASDGQKGQPQMLLQGVQQGAVSAPGPVFTTQTLSQDGVQNVQIQTIASGSPILIRTLGADGQVSWQTLQLQSPGAQITLAPTGASGPVQLSGLQTINLNTLGSGGLQMQPIQMPVTIASAPGEAAADALEDSAVLEENAESSPNTASSRRTRREACTCPYCKDGEGRDPSKKKQHICHIPGCGKVYGKTSHLRAHLRWHTGERPFVCSWSFCGKRFTRSDELQRHKRTHTGEKKFSCTECPKRFMRSDHLSKHIKTHLNKKVCVSACSDPVTPAADADPQTLLTVDSLSADSFTRLPGGISVMQVTDLQSIGLSGSNGF
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0140110 (transcription regulator activity), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003700 (DNA-binding transcription factor activity), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0003690 (double-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0048646 (anatomical structure formation involved in morphogenesis), GO:0007389 (pattern specification process), GO:0048736 (appendage development), GO:0009790 (embryo development), GO:0035107 (appendage morphogenesis), GO:0048598 (embryonic morphogenesis), GO:0001756 (somitogenesis), GO:0009888 (tissue development), GO:0003002 (regionalization), GO:0035282 (segmentation), GO:0060173 (limb development), GO:0035113 (embryonic appendage morphogenesis), GO:0061053 (somite development), GO:0060429 (epithelium development), GO:0009952 (anterior/posterior pattern specification), GO:0009792 (embryo development ending in birth or egg hatching), GO:0043009 (chordate embryonic development), GO:0035136 (forelimb morphogenesis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Carbonic anhydrase (A0A8M2BGQ8)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Function: Reversible hydration of carbon dioxide
InterPro domains:
Sequence:
MRVAGGNLPGRFASTEFHLHWGNGSAMPGSEHTVNGKRFPMELHIVNKPVSNTSDSLAVLGVFIEASNETGKPESWKTLTSYLTRIVKAGDKASLFRNFSMDDLLSGVDRTKYYRYLGSLTTPNCNEGVIWTVFKDPIRVSRDLIDLFSTTVYINNSSNSPLMTNIFRSVQPVNGRIVMSQVAGTKTPGLLNPTSIAANLSPSLMYPILSLTFLYCVLAFL
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0016829 (lyase activity), GO:0016835 (carbon-oxygen lyase activity), GO:0016836 (hydro-lyase activity), GO:0004089 (carbonate dehydratase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0042592 (homeostatic process), GO:0000003 (reproduction), GO:0022414 (reproductive process), GO:0019953 (sexual reproduction), GO:0048878 (chemical homeostasis), GO:0019725 (cellular homeostasis), GO:0048870 (cell motility), GO:0022412 (cellular process involved in reproduction in multicellular organism), GO:0032504 (multicellular organism reproduction), GO:0048609 (multicellular organismal reproductive process), GO:0006885 (regulation of pH), GO:0050801 (monoatomic ion homeostasis), GO:0007276 (gamete generation), GO:0055082 (intracellular chemical homeostasis), GO:0008354 (germ cell migration), GO:0030641 (regulation of cellular pH), GO:0016477 (cell migration), GO:0055080 (monoatomic cation homeostasis), GO:0006873 (intracellular monoatomic ion homeostasis), GO:0051453 (regulation of intracellular pH), GO:0030003 (intracellular monoatomic cation homeostasis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0098552 (side of membrane), GO:0009986 (cell surface), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0009897 (external side of plasma membrane), GO:0005886 (plasma membrane)
Protein: G protein-coupled receptor 34 like (Q6XCC5)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cell membrane; Multi-pass membrane protein. Membrane; Multi-pass membrane protein
InterPro domains:
- IPR017452: GPCR, rhodopsin-like, 7TM (domain) [85-332]
- IPR000276: G protein-coupled receptor, rhodopsin-like (family) [70-340]
- IPR047160: G-protein coupled receptor 183-like (family) [48-359]
Sequence:
MLSQPNLISVEPSISHSVNSNPFFNFSIRHPVTTRFEEVLINFSGITMSPQGNFSSNQSCMIHDGMLSPSLPIGYIIICCVGLLCNTITLYIFFLRRHIESSMAVYMQHLALADTLLVLCLPLRVYYHNTAGPFSVCKAVGVLFYINMYSSILFLTLISLDRYLKIIKPVWVFSIQKKXWSXKASYGVWVLLILGMIPFLIGSGQKHACDNICFHFHSKGIVAGGVNISTVVIFIIFYIVFISFYIKIIHKLKGMSLGNGDLKAKKRVMIKTFLVPAIFTVCFLPYHAVRIPYVLAQLDVIADLPSQQLLHVLNESTLLLSTLNSCLDPIIYYFLSSSYRKTILCAIQGKFKNMYALNRRRISINRSLTEI
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0060089 (molecular transducer activity), GO:0038023 (signaling receptor activity), GO:0004888 (transmembrane signaling receptor activity), GO:0004930 (G protein-coupled receptor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0009987 (cellular process), GO:0023052 (signaling), GO:0065007 (biological regulation), GO:0051716 (cellular response to stimulus), GO:0007154 (cell communication), GO:0007165 (signal transduction), GO:0050794 (regulation of cellular process), GO:0007186 (G protein-coupled receptor signaling pathway)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Catenin delta-1 isoform X6 (A0A8M9Q693)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR000225: Armadillo (repeat) [310-747]
- IPR028435: Plakophilin/Delta catenin (family) [7-788]
- IPR011989: Armadillo-like helical (homologous_superfamily) [280-766]
- IPR016024: Armadillo-type fold (homologous_superfamily) [280-750]
Sequence:
MLDPGHIVESVTVESDPHEALPIISVETGDDGTTRRTETTVKKVTKTTTTRTVIPSVSDTLSLDGTGSVTGMPSYNSPMDRVYRPPPGPMDYPTSTVPRNYHYGPPAGYDDYRSVPPSEAYTSLSRGTRMDDRYRPVDGYRTLDSAYRTHSRPQLDPYSAQPQVGRMGSAVEISALQRFVPEPYGLEDDQRSLGYDEPDYGMGPAMHYSTMPRLAHPHHAPPPRRTGSYEGTLDGDMSGAGDMFYWGGGAPLAQGERGSMASLDSTLRKGPAPTAWRQPELPEVIAMLNYRLDPVKSNAAAYLQHLTFKNDKVKSEVRRLKGIPALVSMLDNPKKEVHYAACGALKNISYGRDPDNKIAIKNCDGIPALVRLLRKTRDQDLTDTITGTLWNLSSHDSVKMEIVDHALHALSDEVMVPHSGWERGNEGGEESCKPRHLEWETALTNTTGCLRNVSSERSEARRKLRECSGLVDSLMYIVQSQINCKDVDNKLIENSVCLLRNLSYQVHREIPGCERYLESIPVNQGPLPSQKGGCFSSRKGKDEWFSKGKREDDGTSDTIDIPKRTTPAKGYELLFQPEVVRVYTSLLKESKNPSVLEAAAGAVQNLCAGRWTYGRYIRATMRQEHGLPMMTELLSHGNDRVVRAMSGALRNLAIDARNRELLGKHAVPNLVANLPGGGQSQPARALSEETVVSVLSTMAEVVGSSVDAAKTLRSAQGIERLVLINKDSNRSDREVRGAGLVLQIVWGFKELRRTLEKDGWKKTDFMVNLNPPNNTRSNGGYEESTLPLIDRGGKQDREKDMIPLNDIGPDAYSTIDQRGRRNTLDDTLDRSDRDAPQGGMYGERRGSLPLLDSYDENLIVCITRREFPPPAYCPC
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0019904 (protein domain specific binding), GO:0019899 (enzyme binding), GO:0019902 (phosphatase binding), GO:0019903 (protein phosphatase binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0048870 (cell motility), GO:0009790 (embryo development), GO:0048598 (embryonic morphogenesis), GO:0009888 (tissue development), GO:0048731 (system development), GO:0016477 (cell migration), GO:0007369 (gastrulation), GO:0048883 (neuromast primordium migration), GO:0048882 (lateral line development), GO:0048880 (sensory system development), GO:0001667 (ameboidal-type cell migration), GO:0048925 (lateral line system development), GO:0042074 (cell migration involved in gastrulation), GO:0048916 (posterior lateral line development), GO:0008078 (mesodermal cell migration), GO:0048920 (posterior lateral line neuromast primordium migration), GO:0048881 (mechanosensory lateral line system development), GO:0048915 (posterior lateral line system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0030054 (cell junction), GO:0070161 (anchoring junction), GO:0005911 (cell-cell junction), GO:0005912 (adherens junction)
Protein: Muscleblind-like protein 2 isoform X1 (A0A8M2BFL2)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Cytoplasm. Nucleus
InterPro domains:
- IPR000571: Zinc finger, CCCH-type (domain) [13-238]
- IPR054429: Muscleblind-like, CCCH zinc finger (domain) [48-251]
Sequence:
MALNIASIRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCTRENCKYLHPPAHLKTQLEINGRNNLIQQKTAAAMLAQQMQFMIPGTTMQPVPTFPVSQGLGSNPGLSYAPYLTPMSHGMGLVPTEMLPSTPVIVPGSPPVSVPSSSSTQKLLRTDKLEVCREFQRGNCARGETDCRFAHPSDSPMIDTSDNTVTVCMDYIKSRCSREKCKYFHPPAHLQAKIKAAQHQANQTAVAAQAAAAAMTQSTAKAMKRPLEASVDLAFPHGVLQPLPKRPALEKSNGASTLFNPSVLHYQQALASAQLQQPTAAFFPTGSVLCMAPASSIDHLEVNHRRGTGCQEAALRNPKRSPCKYDLPSPLELQQPAC
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0001069 (regulatory region RNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009790 (embryo development), GO:0061061 (muscle structure development), GO:0048513 (animal organ development), GO:0048731 (system development), GO:0007517 (muscle organ development), GO:0048880 (sensory system development), GO:0072359 (circulatory system development), GO:0007507 (heart development), GO:0009792 (embryo development ending in birth or egg hatching), GO:0007423 (sensory organ development), GO:0043009 (chordate embryonic development), GO:0150063 (visual system development), GO:0001654 (eye development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Chloride channel protein 2 isoform X1 (A0A8M9QJE0)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Membrane; Multi- pass membrane protein
InterPro domains:
- IPR014743: Chloride channel, core (homologous_superfamily) [49-554]
- IPR001807: Chloride channel (family) [124-553]
- IPR046342: CBS domain superfamily (homologous_superfamily) [554-804]
- IPR050970: Voltage-gated chloride channel (family) [2-824]
Sequence:
MYGRYTQELGAYAKEEAARLREDGGLRRTTSVRGQAPELLEYEKDPCAKCQVCTSRCKKFLISRVGEDWIFLILLGLLMALVSWAMDYTIAFCQQAQKWMYRGLHSNMLLQYLAWVTYPVVLITFSAGFTQILAPQAVGSGIPEMKTILRGVVLKEYLTFKTFVAKVIGLTCALGSGMPLGKEGPFVHVASLCAALLSKFMALFGGIYMEEPFEGNKNELRNTEMLSAACAVGVGCCFAAPIGGVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNKDEETITALFKTRFRLDFPFDLQELPAFAVLGIASGFGGALYVYLNRIIVESMRKQKTINKFLLKKRLVYPAVVTLLISTLTFPPGFGQFMAGQLTQHESLVALFDNLTWYKQGVAEEFEYSSHVPQAWKHPQVSVFITLLLFIVMKFWMSAVATTMPVPCGAFMPVFLIGAAFGRLVGESMAAFFPDGIHADSTVYPIVPGGYAVVGAAALSGAVTHTVSTAVIVFELTGQISHILPVMIAVILANAVAQSLQPSLYDSIIRIQKLPYLPELGWGQEKYNIRVEDIMVRDVRYITLSSSYRDLQEALVTGQLKTLALVESKESMILLGSIERSQLQSLLSQQLGRPRRLEYLRERAQDNGTHVPTFTPDSPPKAGRGVRFLISTEESSYSPTLTNSQIPLKSALKTVSAISNTDSLNSSPNLSCGEPVKELVEDTADVEDDMSTAEIAEWEEQQLDEAVNFNNCKIDPAPFQLVERTSLHKTHTIFSLLGLDHAYVTSTGRLVGVVSLKELRKAIEGSVTVTGVKVRPPLASFRDSGNSSSVSEVTELHKLWSRHKSLSLPREINLPDLDDQTEQPSEGSLVNETECTELSSQNSPLHTDDQSELPYADTSPQDEPLSQLPCDCPEVEESESVGEHCPESTVVVGDGNPSPSDGQPE
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005215 (transporter activity), GO:0022857 (transmembrane transporter activity), GO:0015075 (monoatomic ion transmembrane transporter activity), GO:0022803 (passive transmembrane transporter activity), GO:0015318 (inorganic molecular entity transmembrane transporter activity), GO:1901702 (salt transmembrane transporter activity), GO:0005216 (monoatomic ion channel activity), GO:0008509 (monoatomic anion transmembrane transporter activity), GO:0015267 (channel activity), GO:0015108 (chloride transmembrane transporter activity), GO:0015103 (inorganic anion transmembrane transporter activity), GO:0005253 (monoatomic anion channel activity), GO:0005254 (chloride channel activity)
Biological Process (BP): GO:0008150 (biological process), GO:0042592 (homeostatic process), GO:0048878 (chemical homeostasis), GO:0098771 (inorganic ion homeostasis), GO:0050801 (monoatomic ion homeostasis), GO:0055081 (monoatomic anion homeostasis), GO:0055064 (chloride ion homeostasis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0030054 (cell junction)
Protein: Estrogen-related receptor gamma isoform X5 (A0A8M9PKM0)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
Sequence:
MNLSKAQVNSEDKYAKCGAWRTQQQYDIEASHMRDAHALYNQRLLCRMSNKDRHIESSCPSYIKTEPSSPASLTDSVNHHSPGGSSDASGSYSSTMNGHQNGLDSPTLYGPTGALGPSGTGAKRYEDCSSTITEDSQIKCEYMLNSMPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGLATGNIEYSCPATNECEITKRRRKSCQACRFMKCLTVGMMREGVRLDRVRGGRQKYKRRIDAENSPYLNPQLALPPKKPFPFGCLADNKIVSHLLVAEPEKIYAMPDPTVPDSDIKALTTLCDLADRELVVNIGWAKHIPGFSTLSLADQMSLLQSAWMEILILRVVYRSLSFEDKLVYAEDYIMDEDQSKLAGLLDLNNAILQLVKKYKSMKLEKEEFVTLKAIALANSDSMHIEDVEAVQKLQDVLHEALQDYEAGQHVEDPRRAGKLLMTLPLLRQTSTKAVQHFYSIKQDGKVPMHKLFLELLEAKV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0043565 (sequence-specific DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0000003 (reproduction), GO:0032501 (multicellular organismal process), GO:0022414 (reproductive process), GO:0019953 (sexual reproduction), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0022412 (cellular process involved in reproduction in multicellular organism), GO:0032504 (multicellular organism reproduction), GO:0003006 (developmental process involved in reproduction), GO:0048609 (multicellular organismal reproductive process), GO:0007276 (gamete generation), GO:0007281 (germ cell development), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0007292 (female gamete generation), GO:0048477 (oogenesis)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Transcription factor SOX-5 isoform X3 (A0A8M9PUN3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
- IPR051356: SOX/SOX-like transcription factors (family) [10-757]
- IPR009071: High mobility group box domain (domain) [557-627]
- IPR036910: High mobility group box domain superfamily (homologous_superfamily) [552-635]
Sequence:
MKTGEAEDRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSKVSPRSPRLLDSPPTLHANMDQDGSKGLALSPYAQHNSSTSPSKQQQEDSSMRPGSEPGSASALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFGEIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNYKPGCSEPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQANLATGTLSPTSGQSEKNRSTPPPKPKDEGAQPLNLSSKPKASESKSPTSPASPQVPALKLGPGSLKHSAPSSIGGPPSRLSSIDLLSSITSAGYLNDHEAVTKAFQEARKMKEQLKREEQVLDAKVAAVNSLSLNNGRSEKVRFMEKAALESLSQQLKQSEESKFTHAMMDFGISGDSDGSPSVSDSRIFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPTSQASYFKEVEPRVKEELRMDDGNGDAYDDFDYEDDDGDYGSDSENHITQ
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0043473 (pigmentation), GO:0048869 (cellular developmental process), GO:0048066 (developmental pigmentation), GO:0050931 (pigment cell differentiation), GO:0030154 (cell differentiation), GO:0030318 (melanocyte differentiation)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Heterogeneous nuclear ribonucleoprotein C isoform X1 (A0A8M9Q728)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR000504: RNA recognition motif domain (domain) [26-97]
- IPR035979: RNA-binding domain superfamily (homologous_superfamily) [14-103]
- IPR051186: RRM HNRPC family, RALY subfamily (family) [11-275]
- IPR012677: Nucleotide-binding alpha-beta plait domain superfamily (homologous_superfamily) [12-115]
Sequence:
MDRASSASQLIASNVTNKTDPRSLNSRVFIGNLNTMLVTKADVEAIFSKYGKIVGCSVHKGYAFVQFAQERNARTAVQGEDGRMVVGQVLDVNLAGEPKPHRSKTTKRSAGDMYSSSSSFELDYDFQRDYYDRMYSYPSRVPAPPPLSRAVIPSKRPRVSTSGATSRRTKSSFATSSKSSQRTSSRTLKADDLQTIKRELSQIKHKVDFLLESLDRMEKDHGKKSEGKSVKAEVGEVSPLQHSSKKEREREEQEINDSEEERDLLGEEEEEEEEEEVCVVVAGGRHPKPCDILMLLRLTSVFVLLRLKARVERMRMRKRKEKRKRVSMKKGKMMAIALMVTTRNFKRSGYQTSTQISALSVLLKRLKQVFKRSIYDDVDVCALILADTAITSV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding), GO:0003730 (mRNA 3'-UTR binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0035295 (tube development), GO:0009888 (tissue development), GO:0030154 (cell differentiation), GO:0048731 (system development), GO:0055123 (digestive system development), GO:0060429 (epithelium development), GO:0048565 (digestive tract development), GO:0030855 (epithelial cell differentiation), GO:0060575 (intestinal epithelial cell differentiation), GO:0002065 (columnar/cuboidal epithelial cell differentiation)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)