lokahq/bioreason-rl huggingface dataset:
Protein: Protocadherin-10 isoform X2 (A0A8M3B7B9)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR050174: Protocadherin/Cadherin-related Cell Adhesion (family) [7-829]
- IPR013164: Cadherin, N-terminal (domain) [17-99]
- IPR032455: Cadherin, cytoplasmic C-terminal domain (domain) [677-791]
- IPR020894: Cadherin conserved site (conserved_site) [217-550]
- IPR015919: Cadherin-like superfamily (homologous_superfamily) [16-656]
- IPR002126: Cadherin-like (domain) [14-662]
Sequence:
MILIFLFFSILDGGLSQLHFSVPEEQERGTVVGNIAEDLGLDITKLSARRFQTVPSSRTPYLEVNLENGALVVNERIDREEICRQTVPCLLHLEVFLENPLELFRVEIEVMDINDNPPSFPETDITVEITESATPGTRFPVENAFDPDVGTNALSTYAITTNNYFYLDVQTQGDGNRFAELVLDKPLDREQQAIHKYVLTAVDGGQPQRTGTALLVVKVLDSNDNAPTFDQSVYSVSLRENSPVGTLVIQLNASDMDEGQNGEIVYSLSSHNSPRIRDLFNIDSRTGRIEVTGEVDYEESSTHQIYVQAKDMGPNAVPAHCKVLVKLIDVNDNTPEISFSTVTESVSEQAAPGTVIALLSVTDRDSGENGQMTCELHGEVPFKLKSSFKNYYTIVTDGPLDREKAESYTLTVVAKDKGVPSLSTSKSIKVHVSDENDNAPRFMQSVYDVYVTENNVPGAYIYAVSAVDPDVGQNAYVTYSILECEIQGMSILTYVSINSENGYLYALRSFDYEQIKEFSFMVHAKDSGAPELTANATVNVIIVDQNDNAPSVIAPLGKNGTAREHLPRSAEPGYLVTRIVATDADDGENARLSYSILRGNELGMFRMDWRTGELRTARRVSSKRDPPHPYDLLIEVRDHGQPPLSSSASINVLLVDSVVEGRSGDRGSVKSKEGSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLNIYTCMAGDSCCQCCSRQARGRKKKLSKSDIMLVQSTNVASTAQVPVEESGSFGSHHQNQNYCYQVCLTPESAKTDLMFLKPCSPSRSTDTEHNPCGAIVTGYADQQPDIISNGSILSSETKHQRTELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNRGHTAGADLFSNCTEECKALGHSDRCWMPSFMPGDSRQGADYRSNLHVPGMDAVPDTEHAKGFPSTFRVDIPEKA
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0090130 (tissue migration), GO:0048870 (cell motility), GO:0016477 (cell migration), GO:0090132 (epithelium migration), GO:0010631 (epithelial cell migration), GO:0001667 (ameboidal-type cell migration)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Engulfment and cell motility protein 1 isoform X5 (A0A8M3AVM1)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR001849: Pleckstrin homology domain (domain) [68-194]
- IPR011993: PH-like domain superfamily (homologous_superfamily) [79-195]
Sequence:
MQVVKEQITRALTIKPNSLDQFKSRLQNLSYTEILKLRQSERMNQEDFQSRPILELREKIQPEIMELIKQQRLNRLCEGTCFRKISSRRRQDKFWYCRLSPNHKVLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSVLYESDEYLNFIAPDKHEYCVWTDGLNALLGKEMSSEFTRSDMDTLLNMEMKLRLLDLENIQIPEVPPPIPKEPSNYDFVYDCN
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0048518 (positive regulation of biological process), GO:0050789 (regulation of biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0050793 (regulation of developmental process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0051240 (positive regulation of multicellular organismal process), GO:0071840 (cellular component organization or biogenesis), GO:0051239 (regulation of multicellular organismal process), GO:0051094 (positive regulation of developmental process), GO:0048646 (anatomical structure formation involved in morphogenesis), GO:1904018 (positive regulation of vasculature development), GO:2000026 (regulation of multicellular organismal development), GO:0044085 (cellular component biogenesis), GO:0036303 (lymph vessel morphogenesis), GO:0048731 (system development), GO:0022603 (regulation of anatomical structure morphogenesis), GO:0016043 (cellular component organization), GO:0001945 (lymph vessel development), GO:0001946 (lymphangiogenesis), GO:0030030 (cell projection organization), GO:0001944 (vasculature development), GO:0072359 (circulatory system development), GO:1901342 (regulation of vasculature development), GO:0045766 (positive regulation of angiogenesis), GO:0045765 (regulation of angiogenesis), GO:0006996 (organelle organization), GO:0022607 (cellular component assembly), GO:0070925 (organelle assembly), GO:0030031 (cell projection assembly), GO:0120036 (plasma membrane bounded cell projection organization), GO:0044782 (cilium organization), GO:0120031 (plasma membrane bounded cell projection assembly), GO:0060271 (cilium assembly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: ubiquitinyl hydrolase 1 (A0A8M3AX40)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR018200: Ubiquitin specific protease, conserved site (conserved_site) [169-610]
- IPR001394: Peptidase C19, ubiquitin carboxyl-terminal hydrolase (domain) [168-656]
- IPR028889: Ubiquitin specific protease UPS, catalytic domain (domain) [168-659]
- IPR009060: UBA-like superfamily (homologous_superfamily) [4-72]
- IPR003903: Ubiquitin interacting motif (conserved_site) [30-142]
- IPR054109: UBA-like domain (domain) [15-59]
- IPR054108: Ubiquitin carboxyl-terminal hydrolase 25/28, UIM (conserved_site) [81-131]
- IPR038765: Papain-like cysteine peptidase superfamily (homologous_superfamily) [163-656]
- IPR050164: Ubiquitin carboxyl-terminal hydrolases (family) [111-659]
Sequence:
MTVEQNVLQQHSQKHQQTLLNQLREVTGTTDVQLLQQALQVSNGDLVEAVAFLTEKNAKVPQQDEATYYQTAQITNDRYISVGSQADTNVIDLTGDDKDDLQRAIALSLEESNRAFRETGITDEEQAISRVLEASIAENKASLKRTHTEVWSDSPNPHERKRMENCPVGLKNVGNTCWFSAVIQSLFNLLEFQRLVLHYSPPARMQDLPRNQKEHRNLPFMQELRHLFSLLVGSKRKYVDPSGAVEILKDAFKSSESQQQDVSEFTHKLLDWLEDAFQIKAEEDREGEKPKNPMVELFYGRFLAVGVLEGKKFENTEMFGQYPLQVNGFKDLHECLEAAMIEGEIESLHSAENSAKSGQEHWFTELPPVLTFELSRFEFNQALGRPEKIHNKLEFPSMLYMDRYMDRNREITRIKREEIRRLKEHLTVLQQRLERYLSYGSGPKRFPLADVLQYAMEFASSKPVCTSPVEDIDTTAPPGGTIAQLPPPASAGEQPDACVSAEGSGSGLQASQQQQQRVSIHKPFTQSRVPPDLPMHPAPRHITEEELRVLESCLHRWRSEVENDTRDLQASISRIHRTIELMYSDKSMMQVPYRLHAVLVHEGQANAGHYWAYIYDRHHQRWMKYNDIAVTKSSWEELVRDSFGGYRNASAYCLMYIDDKKPFLIQEFDKETGQMLSGLDKLPPDLKVFVEADNKLFEREMEEWDALQARKLQQEKLALAAAAAAAAAASVAVQPMSTEPCSPDNTAPSAAPQHDPEYMEQQSPSGDSKHLQEDTERAISKAAAEHDEKSPEALLNTSQSSHPDSKLTSDPCPPPDPEQDDPTCPPPGPQRVVEVAIPNVGTFVIQSKEGGYDDEAMMTPNMQGIIMAIGKSRSVYDKCGPEAAFFKAMKVEYTRLLRLAQEDTPPERDYRLQHVIVFFIHNEAPKKIVERTLLMQFADRNLGFDERCKSIMKVARAKLELIKPDEVNLEEYEMWHQDYRIFRETSVFLLIGLELFMKKSFVEALMYLIYAYQYNKELLAKGPYRGHDEELIAHYRRECLLKLNEYAAALFETGEEAKVNTGLSIMNDLVVPCLPLLLVDEMEEKDMVAVEDMRNRWCSYLGQEMEPNLQEKLTDFLPKLLDCSTEIKSFHEPPKLPSYSTLELFERFGRVMTSLTMGRTPADGR
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0003824 (catalytic activity), GO:0140096 (catalytic activity, acting on a protein), GO:0016787 (hydrolase activity), GO:0005515 (protein binding), GO:0008233 (peptidase activity), GO:0008234 (cysteine-type peptidase activity), GO:0019783 (ubiquitin-like protein peptidase activity), GO:0101005 (deubiquitinase activity), GO:0004843 (cysteine-type deubiquitinase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0007389 (pattern specification process), GO:1904888 (cranial skeletal system development), GO:0003002 (regionalization), GO:0009953 (dorsal/ventral pattern formation)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: Vascular endothelial growth factor A-like (A0A8M2B3Z6)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR050507: Platelet-derived/Vascular endothelial growth factor (family) [15-244]
- IPR023581: Platelet-derived growth factor, conserved site (conserved_site) [78-90]
- IPR036841: Vascular endothelial growth factor, heparin-binding domain superfamily (homologous_superfamily) [196-245]
- IPR029034: Cystine-knot cytokine (homologous_superfamily) [38-146]
- IPR000072: PDGF/VEGF domain (domain) [42-137]
Sequence:
MGIKLRVILGMFQFVTLTRIPTQCARTQSDHWMPTQSHKSGEVVRWLDVFQRSGCHPRETLVEVWQEFPWETNHLFLPSCVTLRRCGGCCSDEALECVPSQTHTLVMELMKTSYMKHELVQLPFIEHNQCECRLKANLYAEPTRQGPQTTRRGRKRQRGKPKRKKHMGKNSMMLVPTTPPPPPPPTLPPSSAPPTPAREACPPCPIRKMTSHPPSCECRCSLREVSCTKRGKTLNQSSCRCETQSE
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0048468 (cell development), GO:0030154 (cell differentiation), GO:0048731 (system development), GO:0022008 (neurogenesis), GO:0007399 (nervous system development), GO:0030182 (neuron differentiation), GO:0001944 (vasculature development), GO:0072359 (circulatory system development), GO:0048666 (neuron development), GO:0048699 (generation of neurons)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005576 (extracellular region)
Protein: Septin (A0A8M1NZC4)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Chromosome, centromere, kinetochore. Cytoplasm, cytoskeleton, cilium axoneme
InterPro domains:
- IPR016491: Septin (family) [3-408]
- IPR008115: Septin 7 (family) [212-414]
- IPR030379: Septin-type guanine nucleotide-binding (G) domain (domain) [26-296]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [4-296]
Sequence:
MAQKNLEGYVGFASLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSGEYPGPSNRIKKTVQVEQSKVLMKEGGVQLLLSIVDTPGFGDAVDNSNCWQPVIDHIDSKFEDYLNAESRVNRRQMPDSRVHCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMREILEHKIKIYEFPETDDEEENKIVKTIKDRLPLAVVGSNTIIEANGKKVRGRQYPWGVAEVENGDHCDFTLLRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTCNGIDNNKAKGQLTKSPLAQMEEERREHVTKMKKMEMEMEQVFEMKVKEKVQKLKDSEGELQRRHEQMKKNLEAQHKELEERRRQFEEERSTWETQQRILEQQKMTLEKNKKKGKIF
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0044419 (biological process involved in interspecies interaction between organisms), GO:0009605 (response to external stimulus), GO:0051707 (response to other organism), GO:0009607 (response to biotic stimulus), GO:0006950 (response to stress), GO:0006952 (defense response), GO:0009617 (response to bacterium), GO:0098542 (defense response to other organism), GO:0043207 (response to external biotic stimulus), GO:0042742 (defense response to bacterium)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0071944 (cell periphery), GO:0043229 (intracellular organelle), GO:0005938 (cell cortex), GO:0043228 (non-membrane-bounded organelle), GO:0043232 (intracellular non-membrane-bounded organelle), GO:0005856 (cytoskeleton), GO:0032156 (septin cytoskeleton)
Protein: Protocadherin-18 isoform X3 (A0A8M2B6M3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR050174: Protocadherin/Cadherin-related Cell Adhesion (family) [25-864]
- IPR013164: Cadherin, N-terminal (domain) [31-112]
- IPR020894: Cadherin conserved site (conserved_site) [126-574]
- IPR015919: Cadherin-like superfamily (homologous_superfamily) [132-674]
- IPR002126: Cadherin-like (domain) [27-688]
Sequence:
METSKGTVLCATLLKLALLVTLAGYTTAATLKYQVYEEQKVGTVIARLREDVADVLSKLPSSIPLRFRAMQRGSASLLSVRDQDGEISIRTKIDREKLCEKNLNCTIEFDVLTLPTEHLQLFHIEVEILDINDNAPQFARPVIPIEISETAAVGTRIPLDSATDPDVGENSLNTYSLTPSDFFKIDILTRTDGAKYAELVVLKELDREVRASYELQLTASDRGVPPKFGTTLLKISIADSNDNNPVFEKPSYVINLLENSPLGSLLIDLNATDPDEGANGKIIYSFSSHVSPKILETFKINSDNGHLTLMRKVDFESTNSYDIDVQAQDMGPNSMPAHCKVIIKVVDVNDNKPDISVNLMSTGNEEIAYISETAPVDTFVALVSVNDLDSGLNGEVECRLYGQGHFRLQKSYEKNYMILTNVTLDREKRSEFSLTVIAEDKGSPSLSTIKNFIVEVQDENDNAPSFAKSRYEISKAENNSPGAYLSSVKASDPDLGPNGQVSYSILESMVHGSSISTYVTIDPSNGDIYALRTFDREDVSQISFLVQARDSGNPPLRSNVTVVLTVLDENDNRPVIMMPQLWNHTADVPVSKYAEIGDVVTVVRAMDHDAGANGDLSCSVVGGNEAGYFNMDPKTCEIRTNVSIQEVPRDHVELTILVQDHGTPTLSARALLRLSLYENIENLMNPHLTGGRNGDGPLDVSMIIIISLGAICAVLLLIMVAFALRCSREKKDTRSYNCRVAESTYQQHPKKPSRQIHKGDITLMPTVNGTLPIRAHHRSPTSSPGPERAHMGSRQSQHSRQSLNSLVTISSNHIPENFALELTHATPPVEGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSDAGDSDCEMGRDSPIDRLLGDGFGDLFHSDGHHRLHPAVMRLCTEECRVLGHSDQCWMPSQASSDYRANMFIPGEESRPQVLEEDQQSVDSAKKSFSTFGKDNEEECGGSLLSEMNNVFQRLLPTSYADVRELDESTSQPASSIGMEIRKGFLPGKASSTGSAYPQGVAVWAANTHFQNPGGAVTSGHATTNHAASQAHLKWLPAMEEIPENYEEDDLESVLSQRQGKRNDTRHEVVDASELVAEINKLLQDVRQS
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0009653 (anatomical structure morphogenesis), GO:0048870 (cell motility), GO:0007155 (cell adhesion), GO:0009790 (embryo development), GO:0048598 (embryonic morphogenesis), GO:0048729 (tissue morphogenesis), GO:0009888 (tissue development), GO:0098609 (cell-cell adhesion), GO:0016477 (cell migration), GO:0007369 (gastrulation), GO:0002009 (morphogenesis of an epithelium), GO:0055113 (epiboly involved in gastrulation with mouth forming second), GO:0098742 (cell-cell adhesion via plasma-membrane adhesion molecules), GO:0060429 (epithelium development), GO:0001667 (ameboidal-type cell migration), GO:0016339 (calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules), GO:0002011 (morphogenesis of an epithelial sheet), GO:0042074 (cell migration involved in gastrulation), GO:0001702 (gastrulation with mouth forming second), GO:0090504 (epiboly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0005886 (plasma membrane)
Protein: Collagen, type I, alpha 1b isoform X2 (A0A8M2B1Z3)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
Sequence:
MFSFVDIRLGLLLAAVVLAVRGQGEDDISFGSCTLEGQNYNDKDVWKPEPCQICVCDSGTVMCDEVICEDTSDCANPEIPDGECCPICPDEEVTAAPEPPYVDTVGPAGPRGDPGPVGPPGRDGTPGENGLPGPPGPPGTSGLGGGSFLSQMAYGSEKSSGPPQPGPPGPMGPRGPPGPAGSPGPQGFTGPPGEPGEPGAPGPMGSRGPPGPPGKNGEDGEAGKAGRPGERGAAGPQGARGFPGTPGLPGIKGHRGFPGLDGAKGDAGIAGPKGEAGSPGEAGTPGAMGARGLPGERGRPGPPGPSGARGNDGNTGAAGPPGPTGPAGPPGFPGGAGAKGETGAAGGRGSEGPQGPRGEPGNPGPAGAAGPAGGPGSDGTPGGKGSPGAAGIAGAPGFPGARGPPGPAGPNGAPGPKGNNGDPGLQGPKGDAGPKGEPGPVGPQGLAGNAGEEGKRGARGEPGAAGPVGPPGARGAPGNRGLPGSDGAPGPLGAPGERGANGPMGAQGASGESGRPGEPGLPGSKGMTGAPGSPGPDGKAGPSGAPGQDGRPGPPGPAGSRGAPGVMGFPGPKGTDGESGKPGERGLAGPTGPLGAPGKDGDIGSPGAPGPAGPAGEKGEQGSAGPSGFQGLPGAQGATGETGKPGEQGLPGEAGPSGPSGPRGDRGFPGERGAPGPGGPTGPRGAPGSPGNDGAKGEPGAAGANGGVGPAGMQGMPGERGAGGMPGARGDRGDGGPKGPDGAPGKDGVRGMTGPIGPPGPSGAPGDKGEPGAVGPPGLTGPRGGPGERGEVGAPGPAGFAGPPGATGFPGAAGRVGPPGPSGASGPPGPTGPAGKEGQRGARGEKGPAGRPGEAGAAGPPGPSGERGSPGPDGPLGLAGAPGPPGVIGSRGIVGLPGQRGERGFGGLAGPSGEPGKQGPSGPVGERGPPGPMGPPGLSGAPGEAGREGNPGHDGVSGRDGPPGPKGDRGESGNSGPPGAPGAPGAPGPIGPSGKTGDRGEAGPAGPAGPSGPAGARGALGPAGPRGDRGEAGEAGERGMKGHRGLSGMPGVPGPPGTSGEQGPAGATGPAGPRGPAGSNGSPGKDGMNGVPGPVGPPGPRGRSGEMGPAGAPGLPGPPGPPGSAGPGEPFLPMPQQEKGPDPLRGGYRADDASVRDRDSEVDTSLKSLSQKIENIRSPEGTQANPARMCRDLRMCHPEWKSGSYWVDPNQGSPLDAIKVFCNMETGETCVSPYHSDIPRKNWYTSKNIREKKHVWFGESMPNGFQFQYGSDGSDPEDVNIQLTFMRLMSNQGSQNITYHCKNSIAYMDETSGNLKKALLLQGSNDIEIRAEGNSRFTYRVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDIGAPDQEFGVEVGPVCFL
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032501 (multicellular organismal process), GO:0032502 (developmental process), GO:0007275 (multicellular organism development), GO:0048856 (anatomical structure development), GO:0048731 (system development), GO:0001501 (skeletal system development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005576 (extracellular region)
Protein: Transcription factor SOX-5 isoform X6 (A0A8M2BBY9)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
Subcellular location: Nucleus
InterPro domains:
- IPR051356: SOX/SOX-like transcription factors (family) [14-729]
- IPR009071: High mobility group box domain (domain) [529-599]
- IPR036910: High mobility group box domain superfamily (homologous_superfamily) [524-607]
Sequence:
MLTEPELPQEFNRMSSKRPASPYGGTDGEVVMATSRQRLEDEEVDGHAVIHLPLSSYCSKVSPRSPRLLDSPPTLHANMDQDGSKGLALSPYAQHNSSTSPSKQQQEDSSMRPGSEPGSASALGTPERRKGSLADVVDTLKQRKMEELIKNEPEEAPSIERLLSKDWKDKLLAMGSGNFGEIKGTPDSLAEKERQLMGMITQLSSLREQLLAAHEEQKKLAASQIEKQRQQMELAKQQQDQIARQQQQLLQQQHKINLLQQQIQQVQGQLPPLMIPVFPPDQRTLAAAAAQQGFLLPPGFNYKPGCSEPYPLQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGAKHSTVPQANLATGTLSPTSGQSEKNRSTPPPKPKVPALKLGPGSLKHSAPSSIGGPPSRLSSIDLLSSITSAGYLNDHEAVTKAFQEARKMKEQLKREEQVLDAKVAAVNSLSLNNGRSEKEKAALESLSQQLKQSEESKFTHAMMDFGISGDSDGSPSVSDSRIFREARGRGSSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFTVGQQAQLPLSSAGVVYPGALSMAGMPSPQMPSEHSSMSSSPEPVPPTSQASYFKEVEPRVKEELRMDDGNGDAYDDFDYEDDDGDYGSDSENHITQ
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003677 (DNA binding), GO:0001067 (transcription regulatory region nucleic acid binding), GO:0003690 (double-stranded DNA binding), GO:0043565 (sequence-specific DNA binding), GO:0000976 (transcription cis-regulatory region binding), GO:1990837 (sequence-specific double-stranded DNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0043473 (pigmentation), GO:0048869 (cellular developmental process), GO:0048066 (developmental pigmentation), GO:0050931 (pigment cell differentiation), GO:0030154 (cell differentiation), GO:0030318 (melanocyte differentiation)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: protein-tyrosine-phosphatase (A0A8M2BE70)
Organism: Danio rerio (Zebrafish) (Brachydanio rerio)
InterPro domains:
- IPR029021: Protein-tyrosine phosphatase-like (homologous_superfamily) [7-345]
- IPR050561: Protein Tyrosine Phosphatase (family) [32-458]
- IPR029260: Dual specificity/tyrosine protein phosphatase, N-terminal (domain) [13-156]
- IPR000387: Tyrosine-specific protein phosphatases domain (domain) [263-325]
- IPR000340: Dual specificity phosphatase, catalytic domain (domain) [221-329]
- IPR044506: Dual-specificity phosphatase CDC14, C-terminal (domain) [165-338]
- IPR016130: Protein-tyrosine phosphatase, active site (active_site) [278-288]
- IPR003595: Protein-tyrosine phosphatase, catalytic (domain) [240-334]
- IPR020422: Dual specificity protein phosphatase domain (domain) [181-342]
Sequence:
MNQNGVTLDLQPNCIEFIKDQLYFALLHQKVRSTPDRHCFCIDEELSYENFYADFGPLNLAMLYRFCCKLKKKLKSCAHAKKKIVFYTYGDRKKQANAAYLIGSYAVMHLQKTPEEAYSLLVSQNAPYLPFRDASFGACMYNLNILDCLRAVHKALQFGWLDFTQFNVEEYEHYERAENGDFNWILPGKFLAFSSPHPKSKIENGYPLHAPEAYFPYFRKHNVTTIIRLNKKMYDSKRFTDVGFKHHDLFFVDGSTPNDSIVSRFLHICENADGVIAVHCKAGLGRTGTLIGCYLMKHFRLTAAEAIAWIRICRPGSVIGPQQNFVDEMQSSLWAEGELYRQKINEQENGSAKTAVAGILSGVEDISINGTNKSTSQRKTASQNHTEEEEEDCAGLTQGDKLRALKSKRQSRASTGSISLEENTVHTKSTSKSLSSEKRKRTRASLGSNRASSPLHSRLAKSLGSLQVVACETDGVFCDISDASVANNNSFIKQSNIKHLRSISSAAV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0140096 (catalytic activity, acting on a protein), GO:0016787 (hydrolase activity), GO:0004721 (phosphoprotein phosphatase activity), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0042578 (phosphoric ester hydrolase activity), GO:0016791 (phosphatase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0071840 (cellular component organization or biogenesis), GO:0016043 (cellular component organization), GO:0044085 (cellular component biogenesis), GO:0006996 (organelle organization), GO:0030030 (cell projection organization), GO:0022607 (cellular component assembly), GO:0044782 (cilium organization), GO:0070925 (organelle assembly), GO:0030031 (cell projection assembly), GO:0120036 (plasma membrane bounded cell projection organization), GO:0060271 (cilium assembly), GO:0120031 (plasma membrane bounded cell projection assembly)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0031974 (membrane-enclosed lumen), GO:0043233 (organelle lumen), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043228 (non-membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0070013 (intracellular organelle lumen), GO:0043232 (intracellular non-membrane-bounded organelle), GO:0005856 (cytoskeleton), GO:0031981 (nuclear lumen), GO:0005819 (spindle), GO:0005730 (nucleolus), GO:0005694 (chromosome), GO:0005634 (nucleus), GO:0000793 (condensed chromosome), GO:0015630 (microtubule cytoskeleton)