lokahq/bioreason-rl huggingface dataset:
Protein: Tyrosine-protein phosphatase non-receptor type 12 (A6K5C4)
Organism: Rattus norvegicus (Rat)
Function: Dephosphorylates a range of proteins, and thereby regulates cellular signaling cascades
Subcellular location: Cytoplasm
InterPro domains:
- IPR029021: Protein-tyrosine phosphatase-like (homologous_superfamily) [1-301]
- IPR012266: Tyrosine-protein phosphatase non-receptor type 12 (family) [1-737]
- IPR000242: Tyrosine-specific protein phosphatase, PTPase domain (domain) [27-295]
- IPR000387: Tyrosine-specific protein phosphatases domain (domain) [207-284]
- IPR016130: Protein-tyrosine phosphatase, active site (active_site) [229-239]
- IPR047251: Protein-tyrosine phosphatase non-receptor type-12, catalytic domain (domain) [2-298]
- IPR047170: Tyrosine-protein phosphatase non-receptor type 12/18/22 (family) [1-766]
- IPR003595: Protein-tyrosine phosphatase, catalytic (domain) [188-292]
Sequence:
MEQVEILRRFIQRVQAMKSPDHNGEDNFARDFMRLRRLSTKYRTEKIYPTATGEKEENVKKNRYKDILPFDHSRVKLTLKTPSQDSDYINANFIKGVYGPRAYVATQGPLANTVIDFWRMIWEYNVVIIVMACREFEMGRKKCERYWPLYGEDPITFAPFKISCENEQARTDYFIRTLLLEFQNESRRLYQFHYVNWPDHDVPSSFDSILDMISLMRKYQEHEDVPICIHCSAGCGRTGAICAIDYTWNLLKAGKIPEEFNVFNLIQEMRTQRHSAVQTKEQYELVHRAIAQLFEKQLQLYEIHGAQKITDGNEISTGNMVSSIDSEKQDSPPPKPPRTRSCLVEGDAKEEILQPPEPHPVPPILTPSPPSAFPTVTTVWQDSDRYHPKPVLHMASPEQPPTDLNRNYDKSADLMGRSESAVEHTDKKLEQNLSFEIKKVPLQEGPKSFDGNTLLNRGHAIKIKSASSSVVDKSSKPQELSSGDLKVHDVSQNSCADCSASHLDNAPESSEESQNSHTPPRPDCLPLDKKGHVTWSLHGPENATPVSDSPDNHSQTLKTVSSTPNSTAEEESHDLTEHHNSSPLPRAPLSFTNPLHSDDSDSDEGNSDGAVTKNKTSISTASATVSPASSTESACTRRVLPMSIARQEMAGRRHSGAEKDADVSEESPPPLPERTPESFVLADMPIRSDWHELPSQECSEHRESEGLITSGNDKHDAGVSHTAACSPTFSDKKEEITESLTEVTDIGFGNRCGKPKGPRDPPSEWT
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0003824 (catalytic activity), GO:0140096 (catalytic activity, acting on a protein), GO:0016787 (hydrolase activity), GO:0004721 (phosphoprotein phosphatase activity), GO:0016788 (hydrolase activity, acting on ester bonds), GO:0042578 (phosphoric ester hydrolase activity), GO:0004725 (protein tyrosine phosphatase activity), GO:0016791 (phosphatase activity)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0040007 (growth), GO:0048589 (developmental growth), GO:0048856 (anatomical structure development), GO:0031099 (regeneration), GO:0042246 (tissue regeneration)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005737 (cytoplasm), GO:0005829 (cytosol), GO:0005622 (intracellular anatomical structure)
Protein: RCG27697 (A6KBT6)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR020588: DNA recombination and repair protein RecA-like, ATP-binding domain (domain) [78-259]
- IPR058766: XRCC3/RAD51 homolog 2, helix-hairpin-helix domain (domain) [3-56]
- IPR047348: DNA repair protein XRCC3-like, C-terminal (domain) [89-323]
- IPR016467: DNA recombination and repair protein, RecA-like (family) [1-338]
- IPR013632: Rad51-like, C-terminal (domain) [81-337]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [79-339]
Sequence:
MDLDQLDLNPRITAAIKRGRLKSVKEVLCYSGPDLQRLTSLPSHDVQLLLRAAALHLRGSRVLTALHLFQQRESFPEQHQRLSLGCPVLDQFLGGGLPLEGITGLAGRSSAGKTQLALQLCLAVQFPRQYGGLEAGAVYICTEDAFPSKRLWQLIEQLQELRTDVPGEVTQKIRFGNHIFIEHAADVDTLMECVSKRVPILLSRGMARLVVVDSIAAPFRCEFHLQASAVRAKHLHSLGAALQRLSSTFRSPVLCINQVTEMVEDQESAGAWEERLSPALGITWANQLLMQLMVDRIHEDSVTTGLPRSPARTLRVLFAPHLPLSSCCYTVSGEGVRGMAGTESC
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0050896 (response to stimulus), GO:0042221 (response to chemical), GO:0010033 (response to organic substance)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (A0A8I6B2Z5)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR006138: NADH-ubiquinone oxidoreductase, 20 Kd subunit (family) [43-209]
- IPR006137: NADH:ubiquinone oxidoreductase-like, 20kDa subunit (domain) [93-202]
Sequence:
MAALAAPGLLSVRILGLRTGTVAQLRRAHQSVAATGSPSSTQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0019899 (enzyme binding), GO:0002020 (protease binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0050896 (response to stimulus), GO:0032501 (multicellular organismal process), GO:0048856 (anatomical structure development), GO:0007275 (multicellular organism development), GO:0006950 (response to stress), GO:0042221 (response to chemical), GO:0007568 (aging), GO:0030902 (hindbrain development), GO:0021549 (cerebellum development), GO:0010035 (response to inorganic substance), GO:0022037 (metencephalon development), GO:0006979 (response to oxidative stress), GO:0060322 (head development), GO:0048731 (system development), GO:0048513 (animal organ development), GO:0010038 (response to metal ion), GO:0007420 (brain development), GO:0007417 (central nervous system development), GO:0007399 (nervous system development), GO:0046688 (response to copper ion)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0036477 (somatodendritic compartment), GO:0042995 (cell projection), GO:0071944 (cell periphery), GO:0016020 (membrane), GO:0030054 (cell junction), GO:0044297 (cell body), GO:0043025 (neuronal cell body), GO:0005886 (plasma membrane), GO:0045202 (synapse), GO:0098590 (plasma membrane region), GO:0120025 (plasma membrane bounded cell projection), GO:0043005 (neuron projection), GO:0097060 (synaptic membrane)
Protein: RCG55738, isoform CRA_a (A6JLR7)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR042372: Interleukin-15 receptor subunit alpha (family) [1-271]
- IPR000436: Sushi/SCR/CCP domain (domain) [36-100]
- IPR035976: Sushi/SCR/CCP superfamily (homologous_superfamily) [36-101]
Sequence:
MASPQLRGCGVHALPMLLPLLLLLLLLLPLRVTPGITCPTPISIEHADIRVKNYSVNSRERYVCNSGFKRKAGTSTLTECVINKNTNVAHWTTPNLKCIRDPSLAHYSPVPTVVTPKVTSQPESLSPPEKEPEALSPKSDTTVATETAIVPGSRLTPSQAASAGTTGTGRHKSSPAPSLATTMTLEPTASTSLRITEISPHSSEMTKVAIPTSVLLVAAGIGLVFLTRYIKSRQASQPRRVEVETMETVPMTVRARSKEDEDHTTSETQGDQPTRGV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0060089 (molecular transducer activity), GO:0038023 (signaling receptor activity), GO:0140375 (immune receptor activity), GO:0004888 (transmembrane signaling receptor activity), GO:0004896 (cytokine receptor activity)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0023052 (signaling), GO:0050896 (response to stimulus), GO:0050789 (regulation of biological process), GO:0048519 (negative regulation of biological process), GO:0009605 (response to external stimulus), GO:0051716 (cellular response to stimulus), GO:0048523 (negative regulation of cellular process), GO:0007154 (cell communication), GO:0007165 (signal transduction), GO:0050794 (regulation of cellular process), GO:0009991 (response to extracellular stimulus), GO:0007166 (cell surface receptor signaling pathway), GO:0051129 (negative regulation of cellular component organization), GO:0051128 (regulation of cellular component organization), GO:0031345 (negative regulation of cell projection organization), GO:0031344 (regulation of cell projection organization), GO:0031667 (response to nutrient levels), GO:0097696 (receptor signaling pathway via STAT), GO:0007259 (receptor signaling pathway via JAK-STAT), GO:0120035 (regulation of plasma membrane bounded cell projection organization), GO:0010977 (negative regulation of neuron projection development), GO:0010975 (regulation of neuron projection development)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0016020 (membrane), GO:0009986 (cell surface), GO:0005737 (cytoplasm), GO:0071944 (cell periphery), GO:0012505 (endomembrane system), GO:0031410 (cytoplasmic vesicle), GO:0043229 (intracellular organelle), GO:0005768 (endosome), GO:0043227 (membrane-bounded organelle), GO:0005886 (plasma membrane), GO:0043231 (intracellular membrane-bounded organelle), GO:0031982 (vesicle), GO:0097708 (intracellular vesicle)
Protein: Kinesin-like protein (A6HNZ9)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR001752: Kinesin motor domain (domain) [1-291]
- IPR019821: Kinesin motor domain, conserved site (conserved_site) [177-188]
- IPR036961: Kinesin motor domain superfamily (homologous_superfamily) [24-280]
- IPR027640: Kinesin-like protein (family) [34-700]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [31-319]
Sequence:
MKWIAEEAGLGLNLWLCLERLEANSAKLSRSLLVFAYGATGSGKTHTMLGSTAEPGVMYLTMLDLFKCMDEVKDEKECSTAVSYLEVYNEQIRDLLTNSGPLAVREDAQKGVVVQGLTLHQPKSSEEILQLLDNGNKNRTQHPTDMNAASSRSHAVFQIYLRQQDKTASINQNVHIAKMSLIDLAGSERASISGTKGTRFVEGTNINKSLLALGNVINALADTKRRNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSLFYDDTYNTLKYANRAKDIKSSQLKSNVVNLSSHISQYVKICNMQKAEILMLKEKLKAYEGQKALTDRNDCAKLVHSNVEDKEIERFQEILNCLFQNREGMRQEYLKVEMLLKENELKSSYHQQCHKQIEMMCSEDKLEKATCRRDHRLEKLKSNRCVLEKKKEEMLKQFDENTNWLHRVESEMRLLGQNGDIPEGLNKDLHCHHLHLQNKDLKTQMGHMMTLAALQEQQHGQTEAVLNALLPVLRKQYWRLKETGLSNAAFDSDFKDIEHLVERKKVVAWADQTAEHSNQSDVPGTSLLMTFPQLGPIQSIPCCSSMSDPSILKITPQRRTKRKLIPSPLKVKHTQKSALSERTQLNDSFSKELQPIVYTPEDSRRTVQDLSPPLARASSHSANGMNDNSLKALCRTESPLSRTECKEGLYSTSAICDGIKSLKNNLPEPLPSSKSTLHRVESSSFPTKDSRSVSTSVPSYMAMTTAAKRKWKFMSSTSDASLKSDESCGLAKRIRQDNSSVKLIRENRLRVGYKKTTNKTNSNMLRKFRRNTSKENVQ
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0019899 (enzyme binding), GO:0019900 (kinase binding), GO:0019901 (protein kinase binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0050896 (response to stimulus), GO:0051716 (cellular response to stimulus), GO:0042221 (response to chemical), GO:1901700 (response to oxygen-containing compound), GO:0010033 (response to organic substance), GO:0070887 (cellular response to chemical stimulus), GO:0014070 (response to organic cyclic compound), GO:0032355 (response to estradiol), GO:1901701 (cellular response to oxygen-containing compound), GO:0071310 (cellular response to organic substance), GO:0033993 (response to lipid), GO:0071392 (cellular response to estradiol stimulus), GO:0071407 (cellular response to organic cyclic compound), GO:0071396 (cellular response to lipid)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: RCG52915, isoform CRA_a (A6IQW8)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR013162: CD80-like, immunoglobulin C2-set (domain) [176-256]
- IPR013106: Immunoglobulin V-set domain (domain) [63-167]
- IPR013783: Immunoglobulin-like fold (homologous_superfamily) [59-364]
- IPR033319: Nectin-3, immunoglobulin variable domain 1 (domain) [58-167]
- IPR051427: Nectin and Nectin-like (family) [38-549]
- IPR033320: Nectin-3/4, second Ig domain (domain) [170-265]
- IPR036179: Immunoglobulin-like domain superfamily (homologous_superfamily) [64-362]
- IPR007110: Immunoglobulin-like domain (domain) [37-354]
- IPR003599: Immunoglobulin domain subtype (domain) [63-167]
Sequence:
MARTPGPALLCPGGGKAQLSSASPPAAGLLLPAPTPPPLLLLLIPLLLFSRLCGALAGSIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSTQTVAVHHPQYGFSVQGEYQGRILFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLMKGPDSLIDGGNETVAAVCIAATGKPVARIDWEGDLGEMESTITSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGEWPDGLLASDNTLHFVHPLTFNYSGVYVCKVTNSLGQRSDQKVIYISDPPTTTTLQPTVQWRSSTADVQDLATEHKKLPFPLSTLATLKDDTIGTIIASVVGGALFVVLVSILAGVFCYRRRRTFRGDYFAKNYIPPSDMQKESQIDVLQHDEHDSYPDSVKKENKAPVNNLIRKDYLEEPEKTQWNNVENLTRFERPMDYYEDLKMGMKFVSDERYNENEDDLVSHVDGSVISRREWYV
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0044877 (protein-containing complex binding), GO:0046790 (virion binding), GO:0030246 (carbohydrate binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0007155 (cell adhesion), GO:0098609 (cell-cell adhesion), GO:0098742 (cell-cell adhesion via plasma-membrane adhesion molecules), GO:0007156 (homophilic cell adhesion via plasma membrane adhesion molecules)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0036477 (somatodendritic compartment), GO:0042995 (cell projection), GO:0030054 (cell junction), GO:0097447 (dendritic tree), GO:0045202 (synapse), GO:0120025 (plasma membrane bounded cell projection), GO:0043005 (neuron projection), GO:0030425 (dendrite), GO:0030424 (axon)
Protein: U6 snRNA-associated Sm-like protein LSm1 (A6IW03)
Organism: Rattus norvegicus (Rat)
Function: Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation
Subcellular location: Cytoplasm. Cytoplasm, P-body
InterPro domains:
- IPR034104: Sm-like protein Lsm1 (domain) [4-77]
- IPR010920: LSM domain superfamily (homologous_superfamily) [7-83]
- IPR044642: U6 snRNA-associated Sm-like protein Lsm1/8 (family) [4-103]
- IPR001163: Sm domain, eukaryotic/archaea-type (domain) [8-76]
- IPR047575: Sm domain (domain) [5-80]
Sequence:
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGRKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQSRLEAEKLKVQALKDRGLSIPRADTLDEY
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0097159 (organic cyclic compound binding), GO:1901363 (heterocyclic compound binding), GO:0003676 (nucleic acid binding), GO:0003723 (RNA binding), GO:0003729 (mRNA binding), GO:0036002 (pre-mRNA binding)
Biological Process (BP): GO:0008150 (biological process), GO:0032502 (developmental process), GO:0009987 (cellular process), GO:0065007 (biological regulation), GO:0050789 (regulation of biological process), GO:0048519 (negative regulation of biological process), GO:0032501 (multicellular organismal process), GO:0098727 (maintenance of cell number), GO:0048869 (cellular developmental process), GO:0048856 (anatomical structure development), GO:0050793 (regulation of developmental process), GO:0007275 (multicellular organism development), GO:0019827 (stem cell population maintenance), GO:0051093 (negative regulation of developmental process), GO:0048523 (negative regulation of cellular process), GO:0050794 (regulation of cellular process), GO:0045595 (regulation of cell differentiation), GO:0030154 (cell differentiation), GO:0045596 (negative regulation of cell differentiation), GO:0048731 (system development), GO:0022008 (neurogenesis), GO:0045664 (regulation of neuron differentiation), GO:0007399 (nervous system development), GO:0045665 (negative regulation of neuron differentiation), GO:0030182 (neuron differentiation), GO:0048699 (generation of neurons)
Cellular Component (CC): GO:0005575 (cellular component), GO:0032991 (protein-containing complex), GO:0110165 (cellular anatomical entity), GO:1990904 (ribonucleoprotein complex), GO:0042995 (cell projection), GO:0044297 (cell body), GO:0036477 (somatodendritic compartment), GO:0043025 (neuronal cell body), GO:0120025 (plasma membrane bounded cell projection), GO:0097447 (dendritic tree), GO:1990124 (messenger ribonucleoprotein complex), GO:0043005 (neuron projection), GO:0030425 (dendrite), GO:0030424 (axon)
Protein: Elongation factor Tu GTP binding domain containing 2, isoform CRA_a (A6HJN1)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR004161: Translation elongation factor EFTu-like, domain 2 (domain) [491-566]
- IPR031950: 116kDa U5 small nuclear ribonucleoprotein component, N-terminal (domain) [4-110]
- IPR027417: P-loop containing nucleoside triphosphate hydrolase (homologous_superfamily) [114-439]
- IPR000795: Translational (tr)-type GTP-binding domain (domain) [127-409]
- IPR035647: EF-G domain III/V-like (homologous_superfamily) [585-654]
- IPR041095: Elongation Factor G, domain II (domain) [586-648]
- IPR005225: Small GTP-binding domain (domain) [130-264]
- IPR009000: Translation protein, beta-barrel domain superfamily (homologous_superfamily) [443-568]
- IPR044121: Snu114, GTP-binding domain (domain) [130-328]
Sequence:
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDEDEDEDDVGEHDDDHPGMEVVLHEDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLADLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVGIKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLILSPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKAPSSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTKMYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSELPKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKEQDHHDC
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0009987 (cellular process), GO:0050896 (response to stimulus), GO:0051716 (cellular response to stimulus), GO:0042221 (response to chemical), GO:1901700 (response to oxygen-containing compound), GO:1901698 (response to nitrogen compound), GO:0010033 (response to organic substance), GO:0009410 (response to xenobiotic stimulus), GO:0070887 (cellular response to chemical stimulus), GO:1902074 (response to salt), GO:0071466 (cellular response to xenobiotic stimulus), GO:0042220 (response to cocaine), GO:0014070 (response to organic cyclic compound), GO:0010243 (response to organonitrogen compound), GO:0043279 (response to alkaloid)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0032991 (protein-containing complex), GO:1990904 (ribonucleoprotein complex), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0140513 (nuclear protein-containing complex), GO:0120114 (Sm-like protein family complex), GO:0030532 (small nuclear ribonucleoprotein complex), GO:0043229 (intracellular organelle), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle), GO:0005634 (nucleus)
Protein: ATP-dependent Clp protease proteolytic subunit (A6KQT9)
Organism: Rattus norvegicus (Rat)
InterPro domains:
- IPR001907: ATP-dependent Clp protease proteolytic subunit (family) [115-305]
- IPR018215: ClpP, Ser active site (active_site) [202-213]
- IPR023562: Clp protease proteolytic subunit /Translocation-enhancing protein TepA (family) [99-308]
- IPR029045: ClpP/crotonase-like domain superfamily (homologous_superfamily) [122-302]
- IPR033135: ClpP, histidine active site (active_site) [224-237]
Sequence:
MGQRRGFSLFIRTPINEDPTHRLTPPSSAPPISFSEVDEPAAPAKHAGCCSSGNQAWMHGGMWPRVLLRDGRAAAGGCRALLSRFAVRFSPPWSTGSDSPLRSNLHGTATRAFPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKRQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQDGEDEPELVQKETTTAPADPPAPAGT
Predicted GO terms:
Molecular Function (MF): GO:0003674 (molecular function), GO:0005488 (binding), GO:0005515 (protein binding), GO:0042802 (identical protein binding)
Biological Process (BP): GO:0008150 (biological process), GO:0065007 (biological regulation), GO:0050789 (regulation of biological process), GO:0019222 (regulation of metabolic process), GO:0050794 (regulation of cellular process), GO:0060255 (regulation of macromolecule metabolic process), GO:0031323 (regulation of cellular metabolic process), GO:0080090 (regulation of primary metabolic process), GO:0009889 (regulation of biosynthetic process), GO:0051171 (regulation of nitrogen compound metabolic process), GO:0019219 (regulation of nucleobase-containing compound metabolic process), GO:0051252 (regulation of RNA metabolic process), GO:0010556 (regulation of macromolecule biosynthetic process), GO:0010468 (regulation of gene expression), GO:0031326 (regulation of cellular biosynthetic process), GO:2001141 (regulation of RNA biosynthetic process), GO:0006355 (regulation of DNA-templated transcription), GO:1903506 (regulation of nucleic acid-templated transcription)
Cellular Component (CC): GO:0005575 (cellular component), GO:0110165 (cellular anatomical entity), GO:0005622 (intracellular anatomical structure), GO:0043226 (organelle), GO:0005737 (cytoplasm), GO:0043229 (intracellular organelle), GO:0005739 (mitochondrion), GO:0043227 (membrane-bounded organelle), GO:0043231 (intracellular membrane-bounded organelle)