List of RNA structure prediction software
Comparative methods
Columns: Name | Number of sequences Number of sequences: . | Alignment Alignment: predicts an alignment , . | Structure Structure: predicts structure , . | Knots Knots: Pseudoknot prediction, . | Link
Carnac | any | no | yes | no | sourcecode, webserver | CentroidAlifold | any | no | yes | no | sourcecode webserver | CentroidAlign | any | yes | no | no | sourcecode | CMfinder | 3\le seqs \le60 | yes | yes | no | sourcecode, webserver, website | CONSAN | 2 | yes | yes | no | sourcecode | DAFS | any | yes | yes | yes | sourcecode | Dynalign | 2 | yes | yes | no | sourcecode | FoldalignM | any | yes | yes | no | sourcecode | FRUUT | any | yes | input | no | sourcecode, webserver | GraphClust | any | yes | yes | no | sourcecode | KNetFold | any | input | yes | yes | linuxbinary, webserver | LARA | any | yes | yes | no | sourcecode | LocaRNA | any | yes | yes | no | sourcecode, webserver | MASTR | any | yes | yes | no | sourcecode | Multilign | any | yes | yes | no | sourcecode | Murlet | any | yes | yes | no | webserver | MXSCARNA | any | yes | yes | no | webserver sourcecode | PARTS | 2 | yes | yes | no | sourcecode | Pfold | \le40 | input | yes | no | webserver | PETfold | any | input | yes | no | sourcecode | PMcomp/PMmulti | 2\le seqs \le6 | yes | yes | no | sourcecode, webserver | RNAG | any | yes | yes | no | sourcecode | R-COFFEE | any | yes | yes | no | sourcecode, webserver | TurboFold | any | no | yes | yes | sourcecode | RNA123 | any | yes | yes | yes | webserver | RNAalifold | any | input | yes | no | homepage | RNAcast | any | no | yes | no | sourcecode, webserver | RNAforester | any | yes | input | no | sourcecode, webserver | RNAmine | any | no | yes | no | webserver | RNASampler | any | yes | yes | yes | sourcecode | SCARNA | 2 | yes | yes | no | webserver | SimulFold | any | yes | yes | yes | sourcecode | Stemloc | any | yes | yes | no | sourcecode | StrAl | \le50 | yes | no | no | sourcecode, webserver | TFold | any | yes | yes | yes | webserver | WAR | 2\le seqs \le50 | yes | yes | no | webserver | Xrate | any | yes | yes | no | sourcecode | Notes: | Notes: | Notes: | Notes: | Notes: | Notes: