Document:

EX-10.9C

 Exhibit 10.9(C) 

ARE-SAN FRANCISCO NO. 17, LLC 
 c/o
Alexandria Real Estate Equities, Inc. 
 385 E. Colorado Blvd., Suite 299 

Pasadena, CA 91101 

June 15, 2011 
 Achaogen, Inc. 

7000 Shoreline Court 
 South San Francisco, CA 94080 

Attention: Finance Department 
  

	 	Re:	7000 Shoreline Court, South San Francisco, California 

 To Whom It May Concern: 

The undersigned (“Landlord”) and Achaogen, Inc., a Delaware corporation (“Tenant”) are parties to that certain Amended and Restated Lease
Agreement, dated as of December 29, 2010 (the “Lease”), with respect to certain premises located at 7000 Shoreline Court, South San Francisco, California. Landlord and Tenant desire to amend the Lease to provide for the installation
and maintenance of the Roof Equipment (defined below) as further set forth herein. Capitalized terms used but not defined herein shall have the meanings given thereto in the Lease. 

Subject to the provisions of the Lease and provided that Tenant is not in Default under the Lease, Tenant may, at its sole cost, install, maintain, and from
time to time replace a telecommunications dish antenna or other related equipment on the roof of the Building (collectively, “Roof Equipment”) in a location selected by Landlord and reasonably acceptable to Tenant for Tenant’s own
communication purposely use only; provided, however, that (i) Tenant shall obtain Landlord’s prior written approval with respect to the installation of such Roof Equipment which approval shall not be unreasonably withheld, conditioned or
delayed and shall include consideration of all relevant factors including, without limitation, the proposed size, weight and location of the Roof Equipment and method for fastening the same to the roof (ii) Tenant shall, at its sole cost,
comply with any reasonable requirements imposed by Landlord and all Legal Requirements and the conditions of any bond or warranty maintained by Landlord on the roof, (iii) Tenant shall be responsible for paying for any structural upgrades that
may be required by Landlord in connection with the Roof Equipment, (iv) Tenant shall remove, at its expense, at the expiration or earlier termination of this Lease, any Roof Equipment which Landlord requires to be removed, (v) if
Landlord’s insurance premium or tax assessment is increased as result of the Roof Equipment, Tenant shall pay such increase to Landlord as Additional Rent within 10 days after receipt of invoice from Landlord, and (vi) Landlord shall
have the right to supervise any roof penetration. Tenant may not access the roof without a representative of Landlord (who shall be reasonably available) being present. Tenant shall repair any damage to the Building caused by Tenant’s
installation, maintenance, replacement, use or removal of the Roof Equipment. Tenant shall remove any Roof Equipment at its cost upon expiration or termination of the Lease or sooner, at the request of Landlord, if any of the same unreasonably
interferes, as reasonably determined by Landlord, with the operation of any other tenant’s use of the Project. Tenant shall install, use, maintain and repair the Roof Equipment, and use the access areas, so as not to damage or interfere with
the operation of the Building. Tenant shall not be entitled to any abatement or reduction in the amount of Rent payable under the Lease if for any reason Tenant is unable to use the Roof Equipment. In no event shall the installation, operation,
maintenance, or removal of Roof Equipment by Tenant or its agents void, terminate or invalidate any applicable roof warranty. 

  Archaogen, Inc., - Page
 2
 
 June 15, 2011 
  

 The right to use the Roof Equipment shall be personal solely to Achaeogen., a Delaware corporation and,
(i) no other person or entity shall have any right to use or operate the Roof Equipment, and (ii) Tenant shall not assign, convey or otherwise transfer to any person or entity any right, title or interest in all or any portion of the Roof
Equipment. 
 In the exercise of its rights hereunder, Tenant shall comply with all rules and regulations in the CC&R’s (as defined in
Section 43(n) of the Lease) as amended from time to time and all rules and regulations imposed by any governing body under the CC&R’s (including, without limitation, the Sierra Point Owners Association (“Association”))
as such rules and regulations may be in effect from time to time. Tenant’s exercise of its rights hereunder is conditioned upon Landlord’s receipt of approval thereof from the Association. If required, Tenant shall cooperate with Licensor,
at Tenant’s sole cost and expense, to obtain such approval from the Association. 
 Tenant shall protect, defend, indemnify and hold harmless Landlord
from and against claims, damages, liabilities, costs and expenses of every kind and nature, including reasonable attorneys’ fees, incurred by or asserted against Landlord arising out of Tenant’s installation, maintenance, replacement, use
or removal of the Roof Equipment. 
 The rights granted to Tenant under this letter amendment are not exclusive and Tenant shall cooperate and coordinate as
necessary with any other tenants with Roof Equipment. Tenant shall be responsible for reimbursing Landlord for any reasonable costs actually incurred by Landlord in connection with the exercise by Tenant of any rights granted to Tenant under this
letter amendment. 
 The undersigned agree that the Lease is in full force and effect and unmodified except as set forth herein. 

 

							
	ARE- SAN FRANCISCO NO. 17, LLC,
	a Delaware limited liability company
		
	By:	 	 ALEXANDRIA REAL ESTATE EQUITIES,

L.P., a Delaware limited partnership,

		 	managing member
			
		 	By:	 	ARE-QRS CORP.,
		 		 	 a Maryland corporation
 general
partner

				
		 		 	By:	 	 /s/ Eric S. Johnson

		 		 		 	Eric S. Johnson
		 		 		 	Vice President
		 		 		 	Real Estate legal Affairs

  

			
	ACKNOWLEDGED AND AGREED BY
	  
 ACHAOGEN, INC.,

a Delaware corporation

		
	By:	 	 /s/ John C. Doyle

		 	Name: John C. Doyle
		 	Title: Chief Operating OfficerEX-10.9D

 Exhibit 10.9(D) 

FIRST AMENDMENT TO LEASE 

THIS FIRST AMENDMENT TO LEASE (this “First Amendment”) is made and entered into as of April 1, 2013, by and between
ARE-SAN FRANCISCO NO. 17, LLC, a Delaware limited liability company (“Landlord”), and ACHAOGEN, INC., a Delaware corporation (“Tenant”). 

RECITALS 
 A. Landlord and
Tenant are parties to that certain Amended and Restated Lease Agreement dated as of December 29, 2010, as amended by that certain letter agreement dated January 4, 2011, and as further amended by that certain letter agreement dated
June 15, 2011 (as amended, the “Lease”). Pursuant to the Lease, Tenant leases certain premises (“Premises”), in a building located at 7000 Shoreline Court, South San Francisco, California. The Premises are more
particularly described in the Lease. Capitalized terms used herein without definition shall have the meanings defined for such terms in the Lease. 

B. The Base Term of the Lease is currently scheduled to expire on March 31, 2014 (“Expiration Date”). 

C. Tenant has subleased a portion of the Premises consisting of approximately 19,177 rentable square feet, as shown on Exhibit A
attached hereto (“Sublease Premises”) to Fluidigm Corporation, a Delaware corporation (“Fluidigm”), pursuant to that certain Sublease Agreement dated April 5, 2013. 

D. Concurrent with the execution of this First Amendment by Landlord and Tenant, Landlord has entered into an agreement with Fluidigm, pursuant
to which Fluidigm has agreed to lease the Sublease Premises directly from Landlord immediately upon the expiration of the Lease. 
 E.
Landlord and Tenant desire, subject to the terms and conditions set forth herein, to amend the Lease as provided below. 
 NOW,
THEREFORE, in consideration of the foregoing Recitals, which are incorporated herein by this reference, the mutual promises and conditions contained herein, and for other good and valuable consideration, the receipt and sufficiency of which are
hereby acknowledged, Landlord and Tenant hereby agree as follows: 
  

	1.	Right to Extend Term. Notwithstanding anything to the contrary contained in the Lease, Section 40 of the Lease shall be null and void with respect to the Sublease Premises and Tenant shall have
no right to extend the Term of the Lease with respect to the Sublease Premises beyond the Expiration Date. Tenant shall continue to have the right to extend the Term of the Lease pursuant to Section 40 with respect to the balance of the
Premises. 

  

	2.	Brokers. Landlord and Tenant each represents and warrants that it has not dealt with any broker, agent or other person (collectively, “Broker”) in connection with the transaction reflected
in this First Amendment and that no Broker brought about this transaction, other than Cresa. Landlord and Tenant each hereby agree to indemnify and hold the other harmless from and against any claims by any Broker claiming a commission or other form
of compensation by virtue of having dealt with Tenant or Landlord, as applicable, with regard to this First Amendment. 

  

					
		  	

	  	 Copyright © 2005, Alexandria Real Estate Equities, Inc. ALL

RIGHT RESERVED. Confidential and Proprietary – Do Not
 Copy
or Distribute. Alexandra and the Alexandria Logo are
 registered trademark of Alexandria Real Estate Equities, Inc.

 
 1 

	3.	Miscellaneous. 

 a. This First Amendment is the entire agreement between the
parties with respect to the subject matter hereof and supersedes all prior and contemporaneous oral and written agreements and discussions. This First Amendment may be amended only by an agreement in writing, signed by the parties hereto. 

b. This First Amendment is binding upon and shall inure to the benefit of the parties hereto, their respective successors and assigns. 

c. This First Amendment may be executed in any number of counterparts, each of which shall be deemed an original, but all of which when taken
together shall constitute one and the same instrument. The signature page of any counterpart may be detached therefrom without impairing the legal effect of the signature(s) thereon provided such signature page is attached to any other counterpart
identical thereto except having additional signature pages executed by other parties to this First Amendment attached thereto. 
 d. Except
as amended and/or modified by this First Amendment, the Lease is hereby ratified and confirmed and all other terms of the Lease shall remain in full force and effect, unaltered and unchanged by this First Amendment. In the event of any conflict
between the provisions of this First Amendment and the provisions of the Lease, the provisions of this First Amendment shall prevail. Whether or not specifically amended by this First Amendment, all of the terms and provisions of the Lease are
hereby amended to the extent necessary to give effect to the purpose and intent of this First Amendment. 
 [Signatures are on the next
page.] 

  

					
		  	

	  	 Copyright © 2005, Alexandria Real Estate Equities, Inc. ALL

RIGHT RESERVED. Confidential and Proprietary – Do Not
 Copy
or Distribute. Alexandra and the Alexandria Logo are
 registered trademark of Alexandria Real Estate Equities, Inc.

 
 2 

 IN WITNESS WHEREOF, the parties hereto have executed this First Amendment as of the day
and year first above written. 
  

									
	TENANT:
	
	ACHAOGEN, INC.,
	a Delaware corporation
		
	By:	 	 /s/ Dennis Hom

	Its:	 	VP Finance & Corp Dev
	
	LANDLORD:
	
	 ARE-SAN FRANCISCO NO. 17, LLC,

a Delaware limited liability company

		
	By:	 	 ALEXANDRIA REAL ESTATE EQUITIES,

L.P., a Delaware limited partnership, managing member

			
		 	By:	 	ARE-QRS CORP.,
		 		 	 a Maryland corporation,
 general
partner

				
		 		 	By:	 	 /s/ Eric S. Johnson

		 		 		 	Vice President
		 		 	Its:	 	Real Estate Legal Affairs

  

					
		  	

	  	 Copyright © 2005, Alexandria Real Estate Equities, Inc. ALL

RIGHT RESERVED. Confidential and Proprietary – Do Not
 Copy
or Distribute. Alexandra and the Alexandria Logo are
 registered trademark of Alexandria Real Estate Equities, Inc.

 
 3 

  
 

 

  

					
		  	

	  	 Copyright © 2005, Alexandria Real Estate Equities, Inc. ALL

RIGHT RESERVED. Confidential and Proprietary – Do Not
 Copy
or Distribute. Alexandra and the Alexandria Logo are
 registered trademark of Alexandria Real Estate Equities, Inc.

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