Document:

Exhibit 10.41

EXHIBIT 10.41

SUMMARY OF ATHERSYS, INC.

2011 CASH BONUS INCENTIVE PLAN

On March 25, 2011, the Board of
Directors of Athersys, Inc. (the “Company”), upon the
recommendation of the Compensation Committee of the Board of Directors of the Company, approved a
cash bonus incentive plan (the “Plan”) for the year ended December 31, 2011 for the named
executive
officers of the Company. The Plan provides that each participant is eligible to earn a bonus during
the award term of January 1, 2011 through December 31, 2011. The Plan provides for the following
target bonus percentages of the named executive officer’s salary during the award term, weighted as
set forth below on the achievement of specified corporate goals, with the remainder based on
individual/functional performance. The corporate goals include advancing the Company’s clinical
programs for MultiStem, executing against the established operating plan and capital acquisition
objectives, and advancement of strategic partnership and program activities. There is no formally
adopted plan document for the Plan.

	 	 	 	 	 	 	 	 	 
	 	 	Target	 	 	Weighting on	 
	Title	 	Bonus	 	 	Corporate Goals	 
	Chief Executive Officer
	 	 	40	%	 	 	100	%
	President & Chief Operating Officer
	 	 	33	%	 	 	80	%
	Executive Vice President &
Chief Scientific Officer
	 	 	33	%	 	 	80	%
	Sr. Vice President,
Regenerative Medicine
	 	 	30	%	 	 	60	%
	Vice President of Finance
	 	 	25	%	 	 	60	%Exhibit 10.47

Exhibit 10.47

ATHERSYS, INC. EMPLOYEE

INCENTIVE STOCK OPTION AGREEMENT

This Agreement (“Agreement”) is made as of                     ,
 _____ 

(the “Date of Grant”) by and
between Athersys, Inc., a Delaware corporation (the “Company”) and
 _____ 

(“Optionee”)
with respect to the grant of an Incentive Stock Option by the Company to Optionee pursuant to the
Athersys, Inc. Long-Term Incentive Plan (the “Plan”). (Capitalized terms used in this Agreement
and not otherwise defined have the meanings assigned to them in the Plan).

	1.	 	Grant of Stock Option. Subject to and upon the terms, conditions, and restrictions set forth
in this Agreement, the Company hereby grants to Optionee an option (the “Option”) to purchase

 _____ 
(_____) Shares (the “Option Shares”) of Common Stock of the Company or any
security unto which such shares may be changed by reason of any transaction or event of the
type referred to in Section 10 of this Agreement (“Common Shares”). The Option may be
exercised from time to time in accordance with the terms of this Agreement.

	2.	 	Type of Option. Except to the extent of the $100,000 limitation set forth in Section 422(d)
of the Internal Revenue Code of 1986, as amended from time to time, or any successor provision
thereto (the “Code”), the Option is intended to be an “incentive stock option” within the
meaning of that term under Section 422 of the Code, and this Agreement shall be construed in a
manner that will enable this Option to be so qualified. To the extent, if any that the
$100,000 limitation set forth in Section 422(d) of the Code is exceeded, the Option shall
constitute two separate options with the first option covering the number of Common Shares up
to the $100,000 limitation intended to be an incentive stock option and the second option
covering any excess Common Shares intended to be a nonqualified stock option.

	3.	 	Option Price. The Option Shares may be purchased pursuant to this Option at a price of

 _____ ($_____) per Common Share, subject to adjustment as hereinafter provided (the
“Option Price”). The Option Price shall in no event be less than the fair market value of an
Option Share on the Date of Grant.

	4.	 	Term of Option/Agreement. The term of the Option shall commence on the Date of Grant and,
unless earlier terminated in accordance with Section 7 hereof, shall terminate and expire
automatically and without further notice ten (10) years from the Date of Grant.

 

 

 

	5.	 	Right to Exercise.

	 	(a)	 	Subject to Sections 5(b) and (c), Section 7 and Section 10 below, the Option
will vest and become exercisable as provided in the attached Exhibit A, for so long as
Optionee remains continuously employed with the Company and its Subsidiaries. To the
extent the Option is exercisable, it may be exercised in whole or in part. In no event
shall Optionee be entitled to acquire a fraction of one Option Share pursuant to this
Option. Optionee shall be entitled to the privileges of ownership with respect to
Option Shares purchased and delivered to Optionee upon the exercise of all or part of
this Option.

	 	(b)	 	Notwithstanding Section 5(a) above, the Option shall become immediately
exercisable in full, if at any time prior to the termination of the Option, a Change in
Control shall occur.

	 	(c)	 	Notwithstanding Section 5(a) above, if the Optionee should die or become
permanently disabled while in the employ of the Company or any Subsidiary, this Option
shall immediately become exercisable in full and shall remain exercisable until
terminated in accordance with Section 7 below. The Optionee shall be considered to
have become permanently disabled if the Optionee’s employment terminates on account of
the Optionee having become “permanently and totally disabled”, as defined in Section
22(e)(3) of the Code.

	6.	 	Notice of Exercise; Payment. To the extent then exercisable, the Option may be exercised in
whole or in part by written notice to the Company stating the number of Option Shares for
which the Option is being exercised and the intended manner of payment. The date of such
notice shall be the exercise date. The Option Price shall be payable (a) in cash or by check
acceptable to the Company, (b) by actual or constructive transfer to the Company of
nonforfeitable, unrestricted Common Shares that have been owned by the Optionee for more than
six (6) months prior to the date of exercise, (c) for exercises of Options that occur more
than one (1) year following the Date of Grant, by transfer to the Company of shares or vested
Options (including Options under this Agreement) for the purchase of shares of Common Stock
having a fair market value (net of the exercise price) at the time of exercise equal to the
portion of the Option Price for which such transfer is made, or (d) by a combination of such
methods of payment. The requirement of payment in cash shall be deemed satisfied if the
Optionee shall have made arrangements satisfactory to the Company with a bank or a broker who
is a member of the National Association of Securities Dealers, Inc. to sell on the exercise
date a sufficient number of the shares being purchased so that the net proceeds of the sale
transaction will at least equal the Option Price plus payment of any applicable withholding
taxes and pursuant to which the bank or broker undertakes to deliver the full Option Price
plus payment of any applicable withholding taxes to the Company on a date satisfactory to the
Company, but not later than the date on which the sale transaction will settle in the ordinary
course of business. As soon as practicable upon the Company’s receipt of Optionee’s notice of exercise and payment, the Company shall direct the due
issuance of the Option Shares so purchased.

 

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As a further condition precedent to the exercise of this Option in whole or in part,
Optionee shall comply with all regulations and the requirements of any regulatory authority
having control of, or supervision over, the issuance of the Common Shares and in connection
therewith shall execute any documents which the Board shall in its sole discretion deem
necessary or advisable.

	7.	 	Termination. This Option shall terminate on the earliest of the following dates:

	 	(a)	 	The date on which the Optionee ceases to be an employee of the Company or any
Subsidiary, if the Optionee’s employment with the Company or a Subsidiary is terminated
for Cause (“Cause” being defined as (i) the commission of an act of fraud,
embezzlement, theft or other criminal act constituting a felony; or (ii) the material
breach of any provision contained in a written non-competition, confidentiality or
non-disclosure agreement between the Company or any of its Subsidiaries and Optionee);

	 	(b)	 	Three (3) months after the Optionee ceases to be an employee of the Company or
a Subsidiary, unless the Optionee ceases to be such employee by reason of death,
permanent and total disability, Retirement or termination for Cause;

	 	(c)	 	One (1) year after the death of the Optionee if the Optionee dies (i) while an
employee of the Company or a Subsidiary (in which case the Option becomes immediately
exercisable in full pursuant to Section 5(c) herein), (ii) within the three (3) month
period following a termination without Cause or (iii) within the three (3) month period
following Retirement;

	 	(d)	 	One (1) year after the permanent and total disability of the Optionee if the
Optionee becomes permanently and totally disabled (as described in Section 5(c) above)
while an employee of the Company or a Subsidiary (in which case the Option becomes
immediately exercisable in full pursuant to Section 5(c) herein);

	 	(e)	 	Five (5) years after the date that the Optionee shall Retire. For this
purpose, “Retire” shall mean that Optionee terminates Optionee’s employment by reason
of Optionee’s retirement entitling Optionee to early, normal or late retirement benefit
sunder the provisions of any retirement plan of the Company or its Subsidiaries in
which Optionee participates (or if no such plan exists, at or after age sixty-five
(65); and

	 	(f)	 	Ten (10) years from the Date of Grant.

	8.	 	Option Nontransferable. This Option is not assignable or transferable by the Optionee
otherwise than by will or the laws of descent and distribution. This Option may be exercised,
during the lifetime of the Optionee, only by Optionee, or in the event of Optionee’s legal
incapacity, by Optionee’s guardian or legal representative acting on behalf of Optionee in a
fiduciary capacity under state law and court supervision.

 

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	9.	 	Compliance with Law. This Option shall not be exercisable if such exercise would involve a
violation of any applicable federal, state or other securities law.

	10.	 	Adjustments. The Board (or a committee of the Board) shall make such adjustments in the
Option Price and in the number or kind of Common Shares or other securities covered by this
Option as the Board (or a committee of the Board) shall determine is equitably required to
prevent dilution or enlargement of the rights of the Optionee that otherwise would result from
(a) any stock dividend, extraordinary dividend, stock split, combination of shares,
recapitalization or other change in the capital structure of the Company, or (b) any Change in
Control, merger, consolidation, spin-off, split-off, spin-out, split-up, reorganization or
partial or complete liquidation, or other distribution of assets, issuance of rights or
warrants to purchase securities, or (c) any other corporate transaction or event having an
effect similar to any of the foregoing. Moreover, in the event of any such transaction or
event, the Board (or a committee of the Board), in its discretion, may provide in substitution
for any or all of the Option Rights provided for herein such alternative consideration as it
may determine to be equitable in the circumstances.

	11.	 	Taxes and Withholding. If the Company shall be required to withhold any federal, state,
local or foreign tax in connection with exercise of this Option, it shall be a condition to
such exercise that the Optionee pay or make provision satisfactory to the Company for payment
of all such taxes. The Optionee may elect that all or any part of such withholding
requirement be satisfied by retention by the Company of a portion of the shares purchased upon
exercise of this Option. If such election is made, the shares so retained shall be credited
against such withholding requirement at the Market Value per Share on the date of exercise.
In no event, however, shall the Company accept Common Shares for payment of taxes in excess of
required tax withholding rates.

	12.	 	Mandatory Notice of Disqualifying Disposition. Without limiting any other provision hereof,
Optionee hereby agrees that if Optionee disposes (whether by sale, exchange, gift or
otherwise) of any of the Option Shares acquired pursuant to the exercise of an incentive stock
option within two (2) years of the Date of Grant or within one (1) year after the transfer of
such share or shares to Optionee, Optionee shall notify the Company of such disposition in
writing within thirty (30) days from the date of such disposition. Such written notice shall
state the principal terms of such disposition and the type and amount of the consideration
received for such share or shares by Optionee in connection therewith.

	13.	 	Continuous Employment. For purposes of this Agreement, the continuous employment of the
Optionee with the Company or a Subsidiary shall not be deemed to have been interrupted, and
the Optionee shall not be deemed to have ceased to be an employee of the Company or
Subsidiary, by reason of the (a) transfer of the Optionee’s employment among the Company and
its Subsidiaries or (b) an approved leave of absence.

	14.	 	No Employment Contract. This Option is a voluntary, discretionary award being made on a
one-time basis and it does not constitute a commitment to make any future awards. This Option
and any payments made hereunder will not be considered salary or other compensation for purposes of any severance pay or similar allowance, except as otherwise
required by law. Nothing in this Agreement will give the Optionee any right to continue
employment with the Company or any Subsidiary, as the case may be, or interfere in any way
with the right of the Company or a Subsidiary to terminate the employment of the Optionee.

 

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	15.	 	Information. Information about the Optionee and the Optionee’s participation in the Plan may
be collected, recorded and held, used and disclosed for any purpose related to the
administration of the Plan. The Optionee understands that such processing of this information
may need to be carried out by the Company and its Subsidiaries and by third party
administrators whether such persons are located within the Optionee’s country or elsewhere,
including the United States of America. The Optionee consents to the processing of
information relating to the Optionee and the Optionee’s participation in the Plan in any one
or more of the ways referred to above.

	16.	 	Relation to Plan. This Agreement is subject to the terms and conditions of the Plan. In the
event of any inconsistency between the provisions of this Agreement and the Plan, the Plan
shall govern. All terms used herein with initial capital letters and not otherwise defined
herein that are defined in the Plan shall have the meanings assigned to them in the Plan. The
Board (or a committee of the Board) acting pursuant to the Plan, as constituted from time to
time, shall, except as expressly provided otherwise herein, have the right to determine any
questions which arise in connection with the grant of the Option hereunder.

	17.	 	Amendments. Any amendment to the Plan shall be deemed to be an amendment to this Agreement
to the extent that the amendment is applicable hereto; provided, however, that
no amendment shall adversely affect the rights of the Optionee under this Agreement without
the Optionee’s consent.

	18.	 	Severability. If any provision of this Agreement or the application of any provision hereof
to any person or circumstances is held invalid, unenforceable or otherwise illegal, the
remainder of this Agreement and the application of such provision to any other person or
circumstances shall not be affected, and the provisions so held to be invalid, unenforceable
or otherwise illegal shall be reformed to the extent (and only to the extent) necessary to
make it enforceable, valid and legal.

	19.	 	Successors and Assigns. Without limiting Section 8 hereof, the provisions of this Agreement
shall inure to the benefit of, and be binding upon, the successors, administrators, heirs,
legal representatives and assigns of the Optionee, and the successors and assigns of the
Company.

	20.	 	Counterparts. This Agreement may be executed in one or more counterparts, each of which
shall be deemed to be an original, but all of which together shall constitute one and the same
Agreement.

 

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	21.	 	Governing Law. This Agreement shall be governed by and construed in accordance with the
internal substantive laws of the State of Delaware, without giving effect to any principle of
law that would result in the application of the law of any other jurisdiction.

	22.	 	Notices. Any notice to the Company provided for herein shall be in writing to the Company,
marked Attention: President, and any notice to Optionee shall be addressed to said Optionee
at Optionee’s address on file with the Company at the time of such notice. Except as
otherwise provided herein, any written notice shall be deemed to be duly given if and when
delivered personally or deposited in the United States mail, first class registered mail,
postage and fees prepaid, and addressed as aforesaid. Any party may change the address to
which notices are to be given hereunder by written notice to the other party as herein
specified (provided that for this purpose any mailed notice shall be deemed given on the third
business day following deposit of the same in the United States mail).

Executed in the name and on behalf of the Company at 3201 Carnegie Avenue,
Cleveland, OH, as of the
 _____th day of _____,
 _____.

	 	 	 	 	 
	 	 	ATHERSYS, INC. 	 
	 	  	
 	 
	 	 	Name:  	 	 
	 	 	Title:  	 	 

The undersigned
Optionee hereby accepts the Option Rights evidenced by this Incentive Stock
Option Agreement on the terms and conditions set forth herein and in the Plan.

	 	 	 	 
	Dated:  _____,  _____ 
	 	 	 

 

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EXHIBIT A

	 	 	 	 	 	 	 
	Vesting Date
	 	Shares Vesting
	 	Total Shares Vested
	 	Price/share
	 
	 	 
	 	 
	 	 

 

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