Document:

Amendment to Employment Agreement with Robert Forrester

 Exhibit 10.10 
 AMENDMENT 
 This Agreement amends the agreement between CombinatoRx, Incorporated (the
“Company”) and Robert Forrester (the “Employee”) captioned Employment, Confidentiality and Non-Competition Agreement and dated as of the 23rd day of February, 2004 (the “Employment Agreement”). All capitalized terms
used in this Agreement shall have the meaning ascribed to them in the Employment Agreement, unless otherwise expressly provided herein. 
 For good and valuable consideration, the receipt and sufficiency of which is hereby acknowledged, the parties agree as follows: 
 1. Section 3.6 of the Employment Agreement is amended by striking the first, second and third sentences of the existing Section 3.6 and replacing them with the following: 
 “Notwithstanding anything in this Agreement, it is agreed and understood that, in the event of a “Change of Control” as herein after
defined, the Employee shall be entitled to the following: (i) the Company shall pay the Employee in an amount equal to twice his then Base Salary for a period of twelve (12) months, to be paid in one lump sum at the closing of the Change
of Control, and (ii) all stock options and restricted stock granted by the Company to the Employee to the extent not previously vested shall accelerate and be deemed fully vested. A “Change of Control” shall be deemed to have occurred
when any of the following events takes place: (i) any Person is or becomes the beneficial owner (as defined in Rule 13d-3 under the Securities and Exchange Act of 1934, as amended), directly or indirectly, of fifty (50%) percent or more of
the outstanding common stock of the Company; (ii) a sale, merger or consolidation after which securities possessing more than fifty (50%) percent of the total combined voting power of the Company’s outstanding securities have been
transferred to or acquired by a Person or Persons different from the Persons who held such percentage of the total combined voting power immediately prior to such transaction; (iii) the sale, transfer or other disposition of all or
substantially all of the Company’s assets to one or more Persons (other than a wholly owned subsidiary of the Company or a parent company whose stock ownership after the transaction is the same as the Company’s ownership before the
transaction); or (iv) an acquisition, merger or similar transaction or a divestiture of a substantial portion of the Company’s business after which your role is not substantially the same as such role prior to the transaction; provided,
however, that notwithstanding this definition of Change of Control, if an amount payable hereunder is subject to Internal Revenue Code Section 409A (“Section 409A”), the definition of Change of Control as defined under
Section 409A shall apply. For purposes of this Change of Control definition, “Person” means an individual, a corporation, a limited liability company, an association, a partnership, an estate, a trust and any other entity or
organization, other than the Company or any persons or entities directly or indirectly controlling, controlled by or under common control with the Company, where control may be by either management authority or equity interest.” 
  

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 2. Section 4.1 of the Employment Agreement is amended by striking the existing last sentence and
replacing it with the following: 
 “Good Reason means: (i) the Company materially reducing the scope of the
Employee’s duties and responsibilities or materially demoting or reducing the Employee’s authority; (ii) a material change to the Employee’s primary place of employment with the Company, which results in the Company changing the
Employee’s primary place of employment to a location that is more than fifty (50) miles from the Employee’s primary place of employment with the Company immediately prior to such change; or (iii) the Company materially reducing
the Employee’s Base Salary.” 
 3. Section 4.2 of the Employment Agreement is amended by striking the first and second
paragraphs in their entirety and replacing them with the following: 
 “Company’s Earlier Termination. The
Company shall have the right to terminate Employee’s employment hereunder: (i) without Cause, (i.e. for any reason or no reason whatsoever), upon sixty (60) days prior written notice to the Employee (or, in the Company’s
discretion, pay in lieu of notice) and (ii) for Cause, immediately upon, or at any time after, giving written notice of such termination. In the event that the Employee’s employment is terminated pursuant to Section 4.2(i) without
Cause at any time prior to a Change of Control or if the Employee terminates his employment for Good Reason at any time prior to a Change of Control, then the Employee shall be entitled to a lump-sum severance payment equal to the Change of Control
payment described in Section 3.6 above, and the same accelerated vesting of stock options and restricted stock that he would have been entitled to receive upon a Change of Control pursuant to Section 3.6 above, and in addition, the Company
shall pay the premium cost of the Employee’s participation in the Company’s medical and dental plans for a period of twenty-four (24) months following the date of termination, provided that the Employee is entitled to continue such
participation under applicable law and plan terms. 
 In the event of termination of
employment due to the death or disability of the Employee, the Employee’s Base Salary, fringe benefits and vesting of stock options shall cease as of the 180th day after the Employee’s death or disability. 
 If the Employee terminates his employment without Good
Reason pursuant to the first sentence of Section 4.1 hereof, the Base Salary, fringe benefits and vesting of stock options and restricted stock shall cease as of the date of termination of the Employee’s employment. 
 If the Company terminates the Employee pursuant to (ii) above (i.e. for Cause), then Employee’s Base Salary, fringe benefits and vesting of
stock options shall cease and terminate as of the date of termination of the Employee’s employment. As used herein, “for Cause” shall mean: (a) the Employee’s conviction of a felony; (b) the Employee’s willful
failure to perform (other than by reason of disability), or gross negligence in the performance of, his duties and responsibilities as set forth in Article 2 hereof as determined by the Board, which failure or negligence continues or remains uncured
after 

  

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thirty (30) days’ written notice to the Employee setting forth in reasonable detail the nature of such failure or negligence; (c) material
breach by the Employee of any provision of this Agreement, which breach continues or remains uncured after thirty (30) days’ written notice to the Employee from the Board setting forth in reasonable detail the nature of such breach; or
(d) material fraudulent conduct by the Employee with respect to the Company as determined by the Board. A determination that there is for Cause termination of the Employee’s employment shall be made by the Board in good faith, and only
after notice to Employee and providing Employee an opportunity to be heard, and such determination shall require that the Board find that there has occurred an event described in (a), (b), (c) or (d) above. 
 If the Company terminates the Employee without Cause after a Change of Control or the Employee terminates his employment for Good Reason after a Change
of Control, the Company shall pay the premium cost of the Employee’s participation in the Company’s group medical and dental plans for a period of twenty-four (24) months following the date of termination, provided that the Employee
is entitled to continue such participation under applicable law and plan terms. In the event of such a termination, the Employee will not be entitled to any severance pay, vesting of stock options or restricted stock, or any other separation pay .
For the avoidance of doubt, under no circumstances will the Employee be entitled to payments and benefits under both Section 3.6 and Section 4.2. 
 4. Add the following new Section 18: 
 “Notwithstanding any other provision of this
Agreement, in order to receive any Change of Control payment, severance pay, benefit premium contributions or vesting of stock options or restricted stock under this Agreement, the Employee must execute, and not revoke, (i) in the case of a
separation from employment, a separation agreement that includes a general release of claims in a form required by the Company, or (ii) in the case of a Change of Control under Section 3.6, a general release of claims in a form required by
the Company. Any applicable payment shall be made, or benefits shall begin, within five (5) business days following the effective date of the required separation agreement or general release.” 
 5. Add the following new Section 19: 
 “19. Timing of Payments. If at the time of the Employee’s separation from service, the Employee is a “specified employee,” as hereinafter defined, any and all amounts payable under this
Agreement in connection with such separation from service that constitute deferred compensation subject to Section 409A, as determined by the Company in its sole discretion, and that would (but for this sentence) be payable within six
(6) months following such separation from service, shall instead be paid on the date that follows the date of such separation from service by six (6) months. For purposes of the preceding sentence, “separation from service” shall
be determined in a manner consistent with subsection (a)(2)(A)(i) of Section 409A and the term “specified employee” shall mean an individual determined by the Company to be a specified employee as defined in subsection (a)(2)(B)(i) of
Section 409A.” 
  

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 Except as expressly modified herein, the Employment Agreement, and all of its terms and provisions, shall
remain unchanged and in full force and effect. This Agreement may be executed in two or more counterparts, each of which shall be an original and all of which together shall constitute one and the same instrument. 
 Intending to be legally bound, the parties have signed this Agreement to take effect on the date on which it is signed by the second of the parties.

  

									
	COMBINATORX, INCORPORATED:	 		 	THE EMPLOYEE:
				
	By:	 	/s/Alexis Borisy	 		 	/s/ Robert Forrester
	Title:	 	President and CEO	 		 	Robert Forrester
					
	Date:	 	December 12, 2008	 		 	Date:	 	December 15, 2008

  

 4Letter Agreement Re: Retention Bonus with Robert Forrester

 Exhibit 10.11 
 

 
 December 12, 2008 
 Robert
Forrester 
 Executive Vice President and CFO 
 c/o CombinatoRx,
Incorporated 
 245 First Street 
 Cambridge, MA 02142 

 

	Re:	Retention Bonus 

 Dear Robert: 
 As we discussed, subject to the terms and conditions described below, CombinatoRx, Incorporated (the “Company”) is prepared to offer you a bonus of $250,000,
less legally required deductions (the “Retention Bonus”). The Company will pay you $125,000 of the Retention Bonus if you remain continuously employed by the Company through April 1, 2009, and $125,000 of the Retention Bonus if you
remain continuously employed by the Company through January 15, 2010, each such $125,000 amount to be paid to you within five (5) business days following the applicable April 1, 2009 or January 15, 2010 date; provided, however,
that if the Company terminates your employment without Cause (as defined below) or you terminate for Good Reason (as also defined below) prior to either of the payment dates described above, you will still be eligible to receive the unpaid portion
of the Retention Bonus following your termination of employment without Cause or for Good Reason, such unpaid amount to be paid to you within five (5) business days following the effective date of the required General Release of All Claims. If
you resign your employment for any reason other than for Good Reason (as defined below) prior to January 15, 2010 or the Company terminates your employment with Cause (as defined below) prior to January 15, 2010, you will not be eligible
to receive the unpaid portion of the Retention Bonus. 
 For purposes of this letter, Cause shall mean (i) your conviction of a felony; (ii) your
willful failure to perform (other than by reason of disability), or gross negligence in the performance of, your duties and responsibilities as determined by the Board of Directors, which failure or negligence continues or remains uncured after
thirty (30) days’ written notice to you setting forth in reasonable detail the nature of such failure or negligence; (iii) material breach by you of any provision of any agreement between you and the Company, which breach continues or
remains uncured after thirty (30) days’ written notice to you from the Board of Directors setting forth in reasonable detail the nature of such breach; or (iv) material fraudulent conduct by you with respect to the Company as
determined by the Board of Directors. Additionally, for purposes of this letter, Good Reason shall mean your election to terminate employment with the Company as a result of (i) the Company materially reducing the scope of your duties and
responsibilities or materially demoting or reducing your authority; (ii) a material change to your primary place of employment with the Company, which results in the Company changing your primary place of employment to a location that is more
than fifty (50) miles from your 
 245 First Street, Cambridge, MA 02142 
 Ph: 617 301 7000 Fax: 617 301 7010 www.combinatorx.com 

 

 
 primary place of employment with the Company immediately prior to such change; or (iii) the Company materially reducing
your base salary. In the case of a termination by the Company without Cause (as defined above) or by you for Good Reason (as defined above), in order to receive the unpaid portion of the Retention Bonus, you must execute a General Release of All
Claims in a form required by the Company. 
 You agree that you will not disclose this Agreement or any of its terms, except to members of your immediate
family and to your legal and tax advisors. This letter agreement shall be binding on all of the Company’s successors or assigns. 
  

	
	Sincerely,
	
	/s/ Alexis Borisy
	Alexis Borisy
	Chief Executive Officer

  

	
	ACKNOWLEDGMENT:
	
	/s/ Robert Forrester
	Signature

 Dated: December 15, 2008 
 245 First Street, Cambridge, MA 02142 
 Ph: 617 301 7000 Fax: 617 301 7010 www.combinatorx.com

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