Document:

Exhibit 4.2 9-30-2012 10Q

Exhibit 4.2

FIRST SUPPLEMENTAL INDENTURE
THIS FIRST SUPPLEMENTAL INDENTURE (this “First Supplemental Indenture”), dated as of August 6, 2012, among HEP UNEV Holdings LLC, a Delaware limited liability company (“HEP UNEV Holdings”) and HEP UNEV Pipeline LLC, a Delaware limited liability company (“HEP UNEV Pipeline, and together with HEP UNEV Holdings, the “Guaranteeing Subsidiaries”), Holly Energy Partners, L.P., a Delaware limited partnership (“Holly Energy Partners”), and Holly Energy Finance Corp. (“Finance Corp.” and, together with Holly Energy Partners, the “Issuers”), the other Guarantors (as defined in the Indenture referred to herein) and U.S. Bank National Association, as trustee under the Indenture referred to below (the “Trustee”).
W I T N E S S E T H
WHEREAS, the Issuers have heretofore executed and delivered to the Trustee an Indenture (the “Indenture”), dated as of March 12, 2012, providing for the issuance of 6.50% Senior Notes due 2020 (the “Notes”);
WHEREAS, the Indenture provides that under certain circumstances the Guaranteeing Subsidiaries shall execute and deliver to the Trustee a supplemental indenture pursuant to which the Guaranteeing Subsidiaries shall unconditionally guarantee all of the Issuers’ Obligations under the Notes and the Indenture on the terms and conditions set forth herein (the “Note Guarantee”); and
WHEREAS, pursuant to Section 9.01 of the Indenture, the Trustee is authorized to execute and deliver this First Supplemental Indenture.
NOW, THEREFORE, in consideration of the foregoing and for other good and valuable consideration, the receipt of which is hereby acknowledged, the Guaranteeing Subsidiaries and the Trustee mutually covenant and agree for the equal and ratable benefit of the Holders of the Notes as follows:
1.    CAPITALIZED TERMS.  Capitalized terms used herein without definition shall have the meanings assigned to them in the Indenture.
2.    AGREEMENT TO GUARANTEE.  The Guaranteeing Subsidiaries hereby agree to provide an unconditional Guarantee on the terms and subject to the conditions set forth in the Note Guarantee and in the Indenture including but not limited to Article 10 thereof.
4.    NO RECOURSE AGAINST OTHERS.  No past, present or future director, officer, employee, incorporator, stockholder or agent of the Guaranteeing Subsidiaries, as such, shall have any liability for any obligations of the Issuers or any Guaranteeing Subsidiaries under the Notes, any Note Guarantee, the Indenture or this First Supplemental Indenture or for any claim based on, in respect of, or by reason of, such obligations or their creation.  Each Holder of the Notes by accepting a Note waives and releases all such liability.  The waiver and release are part of the consideration for issuance of the Notes.  Such waiver may not be effective to waive liabilities under the federal securities laws and it is the view of the SEC that such a waiver is against public policy.
5.    NEW YORK LAW TO GOVERN.  THE LAW OF THE STATE OF NEW YORK SHALL GOVERN AND BE USED TO CONSTRUE THIS FIRST SUPPLEMENTAL INDENTURE.
6.    COUNTERPARTS.  The parties may sign any number of copies of this First Supplemental Indenture.  Each signed copy shall be an original, but all of them together represent the same agreement.
7.    EFFECT OF HEADINGS.  The Section headings herein are for convenience only and shall not affect the construction hereof.
8.    THE TRUSTEE.  The Trustee shall not be responsible in any manner whatsoever for or in respect of the validity or sufficiency of this First Supplemental Indenture or for or in respect of the recitals contained herein, all of which recitals are made solely by the Guaranteeing Subsidiaries and the Issuers.

IN WITNESS WHEREOF, the parties hereto have caused this First Supplemental Indenture to be duly executed and attested, all as of the date first above written.

GUARANTEEING SUBSIDIARIES:

HEP UNEV HOLDINGS LLC, a Delaware limited liability company

By:   /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HEP UNEV PIPELINE LLC, a Delaware limited liability company

By:  /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

ISSUERS:

HOLLY ENERGY PARTNERS, L.P.

		
	By:
	HEP Logistic Holdings, L.P., 
Its General Partner

By:    Holly Logistic Services, L.L.C., 
Its General Partner

By:  /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HOLLY ENERGY FINANCE CORP.

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer
OTHER GUARANTORS:

HEP LOGISTICS GP, L.L.C., a Delaware limited liability company

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HOLLY ENERGY PARTNERS-OPERATING, L.P., a Delaware limited partnership

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HOLLY ENERGY STORAGE-TULSA LLC, a Delaware limited liability company

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HOLLY ENERGY STORAGE-LOVINGTON LLC, a Delaware limited liability company

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

CHEYENNE LOGISTICS LLC, a Delaware limited liability company

By:   /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

EL DORADO LOGISTICS LLC, a Delaware limited liability company

By:   /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HEP PIPELINE GP, L.L.C., a Delaware limited liability company

HEP PIPELINE, L.L.C., a Delaware limited liability company

HEP MOUNTAIN HOME, L.L.C., a Delaware limited liability company

HEP REFINING, L.L.C., a Delaware limited liability company

HEP REFINING GP, L.L.C., a Delaware limited liability company

HEP WOODS CROSS, L.L.C., a Delaware limited liability company

HEP TULSA LLC, a Delaware limited liability company

HEP SLC, LLC, a Delaware limited liability company

LOVINGTON-ARTESIA, L.L.C., a Delaware limited liability company

ROADRUNNER PIPELINE, L.L.C., a Delaware limited liability company

		
	Each By:
	Holly Energy Partners – Operating, L.P., a Delaware limited liability company and Its Sole Member

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer
HEP FIN-TEX/TRUST-RIVER, L.P., a Texas limited partnership

HEP NAVAJO SOUTHERN, L.P., a Delaware limited partnership

HEP PIPELINE ASSETS, LIMITED PARTNERSHIP, a Delaware limited partnership

		
	Each by:
	HEP Pipeline GP, L.L.C., a Delaware limited liability company, its General Partner

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

HEP REFINING ASSETS, L.P., a Delaware limited partnership

		
	By:
	HEP Refining GP, L.L.C., a Delaware limited liability company, its General Partner

By: /s/ Stephen D. Wise    
Name: Stephen D. Wise
Title: Vice President and Treasurer

TRUSTEE:
U.S. BANK NATIONAL ASSOCIATION, 
as Trustee

By:    /s/ Steven A. Finklea     
    Name: Steven A. Finklea
Title: Vice President

FIRST SUPPLEMENTAL INDENTURE
US 1617486v.1EXHIBIT 10.1

SECOND AMENDMENT TO
2009 AMENDMENT AND RESTATMENT OF THE
BIOMED REALTY TRUST, INC.
BIOMED REALTY, L.P.
2004 INCENTIVE AWARD PLAN
This Second Amendment (this “Amendment”) to the 2009 Amendment and Restatement of the BioMed Realty Trust, Inc. and BioMed Realty, L.P. 2004 Incentive Award Plan (the “Plan”) is made as of August 31, 2012.  All capitalized terms used but not defined in this Amendment shall have the meanings ascribed to such terms in the Plan. 
The Plan is amended as follows: 
		
	1.
	Section 6.5 is amended and restated as follows: 

“6.5     Automatic Grants to Independent Directors. During the term of the Plan: 
(a) A person who is initially elected to the Board and who is an Independent Director at the time of such initial election automatically shall be granted such number of shares of Restricted Stock on the date of such initial election as is determined by dividing $80,000 by the Fair Market Value per share of the Company's Stock on the date of such grant (subject to adjustment as provided in Article 11). 
(b) Each Independent Director shall be granted such number of shares of Restricted Stock on the date of each annual meeting of the Company's stockholders other than the annual meeting at which the Independent Director first receives an award of Restricted Stock pursuant to paragraph (a) above, as is determined by dividing $80,000 by the Fair Market Value per share of the Company's Stock on the date of such grant (subject to adjustment as provided in Article 11). 
(c) The purchase price per share of any awards of Restricted Stock pursuant to this Section 6.5 shall be the par value per share of the Stock. Unless otherwise determined by the Administrator, in the event of an Independent Director's termination of service as a Director for any reason, shares of Restricted Stock granted pursuant to this Section 6.5 that are at that time subject to restrictions shall be forfeited. Such forfeiture restriction shall lapse on the first anniversary of the date of issuance of such Restricted Stock, subject to an Independent Director's continued service as a Director on such date.” 
		
	2.
	All other terms and conditions of the Plan shall be unchanged and remain in full force and effect. 

* * * * * 
I hereby certify that this Second Amendment was duly adopted by the Board of Directors of BioMed Realty Trust, Inc. on August 31, 2012.
* * * * * 
I hereby certify that this Second Amendment was duly adopted by the Board of Directors of BioMed Realty Trust, Inc., the General Partner of BioMed Realty, L.P., on August 31, 2012.

Executed on this 31st day of August 2012.

/s/ Jonathan P. Klassen             
Secretary, BioMed Realty Trust, Inc.

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