Document:

EX-10.38

 Exhibit 10.38 
  

 
 AMENDED AND RESTATED 

SECOND CLOSING WARRANT AGREEMENT 

Dated as of January 12, 2010 

among 
 VIRGIN AMERICA INC.,

 CAROLA HOLDINGS LIMITED 

and 
 VAI MANAGEMENT, LLC

  
  

 

 This AMENDED AND RESTATED SECOND CLOSING WARRANT AGREEMENT (this “Agreement”),
dated as of January 12, 2010, among Virgin America Inc., a Delaware corporation (the “Company”), Carola Holdings Limited, a limited liability company organized under the laws of the British Virgin Islands
(“Virgin”) and VAI Management, LLC, a Delaware limited liability company (“Investor Managing Member” and, together with Virgin, the “Initial Holders”), is effective as of May 31, 2007.
Capitalized terms used herein but not defined herein have the meanings ascribed to such terms in the Amended and Restated Subscription Agreement, dated as of May 31, 2007, as may be amended (the “Subscription Agreement”), by
and among the Company, Virgin, Virgin Management Limited, a limited liability company organized under the laws of England and Wales (“VML”), Investor Managing Member and VAI Partners LLC, a Delaware limited liability company (the
“Investor”). 
 WHEREAS, on May 31, 2007, the Company, Carola and VAM Partners, LLC, a Delaware limited liability
company (“VAM”) entered into that certain Warrant Agreement (the “Prior Agreement”); 
 WHEREAS, pursuant
to the Assignment and Transfer Agreement, dated as of the date hereof, among the Company, Carola, VML, Investor, Investor Managing Member, VAM and the other parties named therein, VAM agreed to assign and transfer to Investor Managing Member all of
the warrants issued to it by the Company pursuant to the Prior Agreement and transfer its rights and obligations under the Prior Agreement, and Investor Managing Member accepted such assignment and transfer; 

WHEREAS, the Company, Carola and Investor Managing Member desire to make certain other clarifications to the Prior Agreement and agree to
amend, restate and supersede the Prior Agreement as set forth in this Agreement; and 
 WHEREAS, the warrants issued under the Prior
Agreement shall be governed by this Agreement, effective as of May 31, 2007. 
 NOW, THEREFORE, the parties hereto hereby agree as
follows: 
 1. Grant. 

(a) The Company granted on the Second Closing Date (as defined in the Subscription Agreement) to VAM (as predecessor in interest to the
Investor Managing Member) warrants (the “Class A Warrants”) which shall entitle the registered holder thereof to purchase from the Company, at any time and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 292,982 shares, (such shares, together with the shares purchasable by Virgin pursuant to Section 1(b)
below, subject to adjustment as provided in Section 7, the “Class A Warrant Shares”) of Class A Common Stock, par value $0.01 per share, of the Company (the “Class A Common Stock”), at the exercise price
of $0.01 per share, subject to adjustment as provided in Section 7 (the “Class A Exercise Price”), all subject to the terms and upon the conditions set forth herein. 

(b) The Company granted on the Second Closing Date to Virgin Class A Warrants which shall entitle the registered holder thereof to
purchase from the Company, at any time and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 32,553 shares of
Class A Common Stock, at the Class A Exercise Price, all subject to the terms and upon the conditions set forth herein. 

 (c) The Company granted on the Second Closing Date to Virgin warrants (the “Class C-1
Warrants”) which shall entitle the registered holder thereof to purchase from the Company, subject to Section 3(b) below, until 5:00 P.M., New York time, on the thirteen-year anniversary of the Second Closing Date (the “Initial
Expiration Date”) 4,344,043 shares (the “Class C-1 Warrant Shares”) of Class C Common Stock, par value $.01 per share, of the Company (“Class C Common Stock” and, together with the Class A Common
Stock, the “Common Stock”), at the exercise price of (1) if paid in cash, $13.50 per share, subject to adjustment as provided in Section 7 or (2) if paid through amounts received by the warrantholder upon the
contemporaneous redemption of Subordinated Notes (as defined in the Subscription Agreement), the sum of (x) $13.50 per share and (y) the aggregate amount of all paid-in-kind interest, including any paid-in-kind interest added to the
outstanding principal amount of the Subordinated Notes, paid on the Subordinated Notes and all previously accrued but unpaid interest on the Subordinated Notes paid out in connection with such redemption divided by the aggregate number of
Class C-1 Warrant Shares being purchased on any particular exercise of Class C-1 Warrants (such amount in (1) or (2), as applicable, the “Class C-1 Exercise Price”), all subject to the terms and upon the conditions set forth
herein; provided, however, that if within 10 days of the Initial Expiration Date any of the Class C-1 Warrants are unexercisable due to the Foreign Ownership Limitations (as defined below), the Company may elect to, by no later
than 5 days prior to the Initial Expiration Date, extend the maturity date (and shall promptly (and in no event later than the Initial Expiration Date) notify the holders of the Class C-1 Warrants with respect thereto) to a date on which the
Company reasonably believes that the Class C-1 Warrants may be exercised in full (the Initial Expiration Date or such extended maturity date, as applicable, the “Expiration Date”). Notwithstanding anything herein to the contrary,
each Class C-1 Warrant not exercised or deemed exercised on or prior to the earlier of (A) the Expiration Date or (B) the completion of a Company Sale Redemption (as defined in the Subordinated Note Agreement, dated as of May 31,
2007, between the Company and Virgin (as amended, the “Subordinated Note Agreement”)) shall become invalid and all rights thereunder, and all rights in respect thereof under this Agreement, shall cease as of that time. 

(d) The Company granted on the Second Closing Date to Virgin warrants (the “Class C-2 Warrants” and, together with the
Class A Warrants and the Class C-1 Warrants, the “Warrants”) which shall entitle the registered holder thereof to purchase from the Company, at any time and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 1,346,065 shares (the “Class C-2 Warrant Shares” and, together with the Class A Warrant
Shares and the Class C-1 Warrant Shares, the “Warrant Shares”) of Class C Common Stock at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 (the “Class C-2 Exercise Price”
and, together with the Class A Exercise Price and the Class C-1 Exercise Price, the “Exercise Price”), all subject to the terms and upon the conditions set forth herein. 

2. Warrant Certificates. 

(a) The Class A Warrants shall be evidenced by certificates issued pursuant to this Agreement (the “Class A Warrant
Certificates”) in the forms set forth in Exhibit A hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

 (b) The Class C-1 Warrants shall be evidenced by certificates issued pursuant to this Agreement
(the “Class C-1 Warrant Certificates”) in the form set forth in Exhibit B hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

(c) The Class C-2 Warrants shall be evidenced by certificates issued pursuant to this Agreement (the “Class C-2 Warrant
Certificates”) in the form set forth in Exhibit C hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

3. Exercise Period. 
 (a)
The Class A Warrants and the Class C-2 Warrants shall be exercisable upon the earlier to occur of (i) a Qualified Public Offering (as defined in the Third Amended and Restated Stockholders Agreement, dated as of the date hereof, as may be
amended, restated or superseded from time to time (the “Stockholders’ Agreement”), among the Company, Virgin, the Investor, Investor Managing Member and the other parties named therein and (ii) the third anniversary of the
Second Closing Date; provided, however, that neither the Class A Warrants nor the Class C-2 Warrants shall be exercisable until the earlier to occur of the (x) permissibility of such exercise under the United States federal
statutory and/or regulatory restrictions with respect to the ownership and control of U.S. airlines by non-United States Citizens (the “Foreign Ownership Limitations”) or (y) the transfer of such warrants in accordance with the
terms of the Stockholders’ Agreement to any holder who is a Citizen of the United States (a “U.S. Citizen”) as defined in Section 40102(a)(15) of Title 49 of the United States Code, as in effect on the date in question, or
any successor statute or regulation, as interpreted by the United States Department of Transportation (the “DOT’) or any other federal department or agency at the time administering the federal aviation laws codified in title 49 of
the United States Code in applicable precedent. 
 (b) The Class C-1 Warrants shall not be exercisable until the earlier to occur of the
(x) permissibility of such exercise under the Foreign Ownership Limitations or (y) the transfer of such warrants in accordance with the terms of the Stockholders’ Agreement to any holder who is a U.S. Citizen; provided,
however, that transfer of such warrants to a holder who is a U.S. Citizen shall not be permitted unless simultaneously with such transfer the transferor also transfers Subordinated Notes with an aggregate principal amount equal to the
aggregate exercise price of all Class C-1 Warrants subject to such transfer. Notwithstanding anything herein to the contrary but subject to compliance with clause (x) in the preceding sentence, upon the conversion of any shares of Preferred
Stock to Class A Common Stock, the holder(s) of the Class C-1 Warrants shall be required to exercise Class C-1 Warrants and to purchase, in the aggregate, that number of Class C-1 Warrant Shares equal to the number of shares of Class A
Common Stock issuable upon conversion of such shares of Preferred Stock (not to exceed the number of shares issuable upon exercise of all the Class C-1 Warrants). The obligations of each holder of Class C-1 Warrants to purchase Class C-1 Warrant
Shares pursuant to the previous sentence shall be allocated pro rata based on the number of Class C-1 Warrant Shares underlying each holder’s respective Class C-1 Warrants immediately prior to such exercise. 

 4. Exercise of Warrant. 

(a) General. Subject to the provisions of this Agreement, upon surrender to the Company at its principal office of a Warrant
Certificate with the Form of Election to Purchase substantially in the form attached hereto as Annex II duly executed, together with payment in accordance with Section 4(b) of the applicable Exercise Price then in effect, the Company shall
issue and deliver promptly to the registered holder of such Warrant Certificate, a certificate or certificates for the Warrant Shares or other securities or property to which the registered holder is entitled, registered in the name of such
registered holder or, upon the written order of such registered holder, in such name or names as such registered holder may designate. Any certificate or certificates representing Warrant Shares shall be deemed to have been issued and any person so
designated to be named therein shall be deemed to have become the holder of record of the Warrant Shares as of the date of the surrender of such Warrant Certificate (together with such duly executed Form of Election to Purchase) and payment of the
Exercise Price. Notwithstanding anything to the contrary contained in this Section 4(a), in the event that the registered holder of a Warrant Certificate fails to surrender such holder’s Warrant Certificates and annexed Form of Election to
Purchase prior to the Expiration Date (if any) such holder shall be deemed to have surrendered such Warrant Certificates immediately prior to 5:00 P.M., New York time, on the Expiration Date (if any) together with an election to have the payment of
the corresponding Exercise Price made in accordance with Section 4(b), the Company shall issue and deliver promptly to such registered holder, a certificate or certificates for the Warrant Shares or other securities or property to which the
registered holder is entitled, registered in the name of such registered holder. 
 (b) Payment. Payment of the applicable Exercise
Price shall be made (i) with respect to the Class A Warrants and the Class C-2 Warrants, in cash and (ii) with respect to the Class C-1 Warrants, (A) by applying a corresponding principal amount, including any paid-in-kind
interest added to the outstanding principal amount of the Subordinated Notes, and all accrued but unpaid interest on the Subordinated Notes issued pursuant to the Subordinated Note Agreement, to the extent permitted by the terms of the Subordinated
Notes, held by any holder (regardless of whether such amount is then due or whether such Subordinated Note is then redeemable) and (B) in cash, if and to the extent that the amount of principal, including any paid-in-kind interest added to the
outstanding principal amount of the Subordinated Notes, and all accrued but unpaid interest on the Subordinated Notes is insufficient to pay the full amount of the Exercise Price. 

(c) Exercise in Whole or in Part. The purchase rights evidenced by a Warrant Certificate shall be exercisable, at the election of the
registered holder thereof, in whole or in part. If less than all of the Warrant Shares purchasable under any Warrant Certificate are purchased, the Company shall cancel such Warrant Certificate upon the surrender thereof and shall execute and
deliver a new Warrant Certificate of like tenor for the remaining number of Warrant Shares purchasable thereunder. 

 (d) Fractional Shares. No fractional shares of Common Stock shall be issued upon exercise
of any Warrants. Instead the Company shall round the results of an exercise down to the nearest full share of Common Stock and pay the warrant holder an amount in cash equal to the amount of the fractional share not issued multiplied by the Exercise
Price per share. 
 (e) Reservation of Shares. The Company will at all times reserve and keep available out of its authorized Common
Stock solely for the purpose of issuance upon exercise of the Warrants as herein provided, such number of shares of Common Stock as shall from time to time be issuable upon the exercise of all outstanding Warrants. All shares of Common Stock that
may be issued upon exercise of the Warrants must and will be duly authorized and, upon issuance, be validly issued, fully paid and nonassessable and not subject to preemptive rights of any stockholder or other person and free from all taxes, liens,
charges and security interests with respect to the issuance thereof, other than those taxes, liens, charges and security interests as may be created by the holder of such Warrants or its affiliates. 

(f) DOT Notification. The Company will provide the DOT with notice whenever the Warrants are exercised by a person who is not a U.S.
Citizen. 
 5. Restrictions on Transfer. 

(a) Warrant Register. The Company shall maintain at its principal office a Warrant Register for registration of Warrant Certificates
and transfers thereof. The Company shall initially register the outstanding Warrants in the name of the Initial Holders. The Company may deem and treat the registered holder(s) of the Warrant Certificates as the absolute owner(s) thereof and of the
Warrants represented thereby (notwithstanding any notation of ownership or other writing on the Warrant Certificates made by any person) for the purpose of any exercise thereof or any distribution to the holder(s) thereof, and for all other
purposes, and the Company shall not be affected by any notice to the contrary. For the purpose of this Agreement, all references to a holder herein shall refer to a registered holder of Warrants. 

(b) Warrants and Warrant Shares Not Registered. Each registered holder of the Warrants, by acceptance thereof, represents and
acknowledges that the Warrants and the Warrant Shares (x) which may be purchased upon exercise of a Warrant are not registered under the Securities Act of 1933, as amended (the “Securities Act”) or under any state securities
laws, that the issuance of the Warrants and the offering and sale of such Warrant Shares are being made in reliance on the exemption from registration under Section 4(2) of the Securities Act and from similar exemptions under state securities
laws as not involving any public offering and that the Company’s reliance on such exemption is predicated in part on the representations made by the Initial Holders of the Warrants to and with the Company that such holder (1) is acquiring
the Warrants for investment for its own account, with no present intention of reselling or otherwise distributing the same, (2) is an “accredited investor” as defined in Regulation D under the Securities Act, and (3) has such
knowledge and experience in financial and business matters that it is capable of evaluating the merits and risks of the investments made or to be made in connection with the acquisition and exercise of the Warrants and (y) are subject to
restrictions on transfer under the Stockholders’ Agreement. Neither the Warrants nor the related Warrant Shares may be transferred except (i) in compliance with the terms of the Stockholders’ Agreement and (ii) (A) pursuant
to an effective registration statement under the Securities Act, 

 
(B) pursuant to Rule 144 under the Securities Act if the transfer is permitted by Rule 144 and the transferor delivers a certificate, in form and substance reasonably satisfactory to the Company,
that such transfer complies with the requirements of Rule 144, or (C) pursuant to any other available exemption from registration if such transferee makes the representations set forth in the preceding sentence in writing to the Company and, in
the case of any transfer pursuant to clause (B) or (C), accompanied by the delivery to the Company of an opinion of counsel reasonably satisfactory to the Company by counsel reasonably satisfactory to the Company, stating that no registration
is required under the Securities Act. 
 (c) Warrants and Warrant Shares Not Registered. Each registered holder of the Warrants, by
acceptance thereof, agrees that prior to any disposition by such holder of the Warrants or of any Warrant Shares, such holder will give written notice to the Company expressing such holder’s intention to effect such disposition and describing
briefly such holder’s intention as to the manner in which the Warrants or the Warrant Shares theretofore issued or thereafter issuable upon exercise hereof, are to be disposed of together with the opinion described in Section 5(b), if
required, whereupon, but only if such transfer is not restricted pursuant to the Stockholders’ Agreement and is otherwise permitted pursuant to Section 5(b) above, such transferring holder shall be entitled to dispose of the Warrants
and/or the Warrant Shares theretofore issued upon the exercise thereof, all in accordance with the terms of the notice delivered by such holder to the Company. In the event of such transfer, the Company shall register the transfer of any outstanding
Warrants in the Warrant Register upon surrender of the Warrant Certificate(s) evidencing such Warrants to the Company at its principal office, accompanied by a written instrument of transfer in form reasonably satisfactory to it, duly executed by
the registered holder thereof. Upon any such registration or transfer, new Warrant Certificate(s) evidencing such transferred Warrants shall be issued to the transferee(s) and the surrendered Warrant Certificate(s) shall be canceled. 

6. Listing on Securities Exchanges. If the Common Stock is listed on a stock exchange or quoted on the Nasdaq Global Market, the
Company will use its reasonable efforts to procure at its sole expense the listing of all Warrant Shares (subject to issuance or notice of issuance) on all stock exchanges on which the Common Stock is then listed, or the quotation of the Warrant
Shares on the Nasdaq Global Market, as the case may be, and maintain the listing or quotation of such shares and other securities after issuance. 

7. Adjustment of the Number of Warrant Shares Issuable. Subject to the limitations set forth herein, the number of Warrant Shares
issuable upon the exercise of each Warrant is subject to adjustment from time to time upon the occurrence following the Second Closing Date of the events enumerated in this Section 7. For purposes of this Section 7, “Common
Stock” means shares now or hereafter authorized of any class of common stock of the Company, including but not limited to the Class A Common Stock and the Class C Common Stock, and any other stock of the Company, however designated, that
has the right (subject to any prior rights of any class or series of preferred stock) to participate in any distribution of the assets or earnings of the Company without limit as to per share amount, but excluding any shares of any class of common
stock of the Company issued or issuable upon exercise or conversion of equity securities issued under the Subscription Agreement. 

 (a) Adjustment for Change in Capital Stock. If the Company: 

 

	 	(i)	pays a dividend or makes a distribution on its Common Stock, in either case in shares of its Common Stock; 

  

	 	(ii)	subdivides its outstanding shares of Common Stock into a greater number of shares; 

  

	 	(iii)	combines its outstanding shares of Common Stock into a smaller number of shares; 

  

	 	(iv)	makes a distribution on its Common Stock in shares of its capital stock other than Common Stock; or 

  

	 	(v)	issues by reclassification of its Common Stock any shares of its capital stock, 

 then the number of shares of
Common Stock issuable upon exercise of each Warrant immediately prior to such action shall be proportionately adjusted so that the holder of any Warrant thereafter exercised shall receive the aggregate number and kind of shares of capital stock of
the Company which he would have owned immediately following such action if such Warrant had been exercised immediately prior to such action. 

The adjustment shall become effective immediately after the record date in the case of a dividend or distribution and immediately after the
effective date in the case of a subdivision, combination or reclassification. 
 Such adjustment shall be made successively whenever any
event listed above shall occur. 
 (b) Adjustment for Rights Issue. 

If the Company distributes any rights, options or warrants to all holders of its Common Stock entitling them to purchase shares of Common
Stock at a price per share less than the current market price per share on the record date for determining holders entitled to the distribution of rights, options or warrants, the number of shares of Common Stock issuable upon exercise of each Class
C-1 Warrant shall be adjusted in accordance with the formula: 
  

							
		  	N1 = N x  	 	 O + A
	  	
	  	 	O + (A x P/M)	  	

 where: 
  

							
		 	N1	 	=	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	N	 	=	  	the current number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	O	 	=	  	the number of shares of Common Stock outstanding on the record date.

							
		 	A	 	=	  	the number of additional shares of Common Stock offered.
				
		 	P	 	=	  	the purchase price per share of the additional shares.
				
		 	M	 	=	  	the current market price per share of Common Stock on the record date.

 The adjustment shall be made successively whenever any such rights, options or warrants are issued and shall
become effective immediately after the record date for the determination of stockholders entitled to receive the rights, options or warrants. If at the end of the period during which such rights, options or warrants are exercisable, not all rights,
options or warrants shall have been exercised, the number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant shall be immediately readjusted to what it would have been if “N” in the above formula had been the number
of shares actually issued at the end of the period. 
 (c) Adjustment for Other Distributions. If the Company distributes to all
holders of its Common Stock any of its assets (excluding cash distributions for which Section 7(p) hereof is applicable) or debt or other securities or any rights, options or warrants to purchase the assets or debt or other securities of the
Company, the number of shares of Common Stock issuable upon exercise of each Warrant shall be adjusted in accordance with the formula: 
  

							
		  	N' = N x	  	 M
	  	
	  	  	M - F	  	

 where: 
  

							
		 	N'	 	=	  	the adjusted number of shares of Common Stock issuable upon exercise of each Warrant.
				
		 	N	 	=	  	the current number of shares of Common Stock issuable upon exercise of each Warrant.
				
		 	M	 	=	  	the current market price per share of Common Stock on the record date mentioned below.
				
		 	F	 	=	  	the fair market value on the record date of the assets, securities, rights, options or warrants distributable to one share of Common Stock after taking into account, in the case of any rights, options or warrants, the consideration
required to be paid upon exercise thereof. The Board shall reasonably determine the fair market value in good faith and such determination shall be conclusive.

 The adjustment shall be made successively whenever any such distribution is made and shall become effective
immediately after the record date for the determination of stockholders entitled to receive the distribution. This Section 7(c) does not apply to rights, options or warrants referred to in Section 7(b). If any adjustment is made pursuant
to this Section 7(c) as a result of the issuance of rights, options or warrants and at the end of the period during which any such rights, options or warrants are exercisable, not all such rights, options or warrants shall have been exercised,
the Warrant shall be immediately readjusted as if “F” in the above formula was the fair market value described in the definition of “F” on the record date of 

 
the assets or securities actually distributed upon exercise of such rights, options or warrants divided by the number of shares of Common Stock outstanding on the record date. Notwithstanding
anything to the contrary contained in this Section 7(c), if “M-F” in the above formula is less than $1.00, the Company may elect to, and if “M-F” is a negative number, the Company shall, in lieu of the adjustment otherwise
required by this Section 7(c), distribute to the holders of the Warrants, upon exercise thereof, the assets, securities, rights, options or warrants (or the proceeds thereof) which would have been distributed to such holders had such Warrants
been exercised immediately prior to the record date for such distribution. 
 (d) Adjustment for Common Stock Issue. If the Company
issues shares of Common Stock for a consideration per share less than the current market price per share on the date the Company fixes the offering price of such additional shares, the number of shares of Common Stock issuable upon exercise of each
Class C-1 Warrant shall be adjusted in accordance with the formula: 
  

							
		  	N' = N x	  	 A
	  	
	  	  	O + P/M	  	

 where: 
  

							
		 	N'	 	=	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	N	 	=	  	the current number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	O	 	=	  	the number of shares outstanding immediately prior to the issuance of such additional shares.
				
		 	P	 	=	  	the aggregate consideration received for the issuance of such additional shares.
				
		 	M	 	=	  	the current market price per share on the date of issuance of such additional shares.
				
		 	A	 	=	  	the number of shares of Common Stock outstanding immediately after the issuance of such additional shares.

 The adjustment shall be made successively whenever any such issuance is made, and shall become effective
immediately after such issuance. 
 This Section 7(d) does not apply to: 

 

	 	(i)	any of the transactions described in Sections 7(b) and 7(c), 

  

	 	(ii)	the exercise of Warrants, or the conversion or exchange of other securities convertible or exchangeable for Common Stock, or the issuance of Common Stock upon the exercise of rights, options or warrants issued to the
holders of Common Stock, 

	 	(iii)	Common Stock (and options exercisable therefor) issued to the Company’s employees, officers, directors, consultants or advisors (whether or not still in such capacity on the date of exercise) under bona fide
employee benefit plans or stock option plans adopted by the Board and approved by the holders of Common Stock when required by law, if such Common Stock would otherwise be covered by this Section 7(d), and 

 

	 	(iv)	Common Stock issued in a bona fide public offering. 

 (e) Adjustment for Convertible
Securities Issue. If the Company issues any securities convertible into or exchangeable for Common Stock (other than securities issued in transactions described in Sections 7(b) and 7(c)) for a consideration per share of Common Stock initially
deliverable upon conversion or exchange of such securities less than the current market price per share on the date of issuance of such securities, the number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant shall be
adjusted in accordance with this formula: 
  

							
		  	N' = N x	  	 O + D
	  	
	  	  	O + P/M	  	

 where: 
  

							
		 	N'	 	=	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	N	 	=	  	the current number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant.
				
		 	O	 	=	  	the number of shares of Common Stock outstanding immediately prior to the issuance of such securities.
				
		 	P	 	=	  	the aggregate consideration received for the issuance of such securities.
				
		 	M	 	=	  	the current market price per share on the date of issuance of such securities.
				
		 	D	 	=	  	the maximum number of shares of Common Stock deliverable upon conversion or in exchange for such securities at the initial conversion or exchange rate.

 The adjustment shall be made successively whenever any such issuance is made, and shall become effective
immediately after such issuance. 

 If all of the Common Stock deliverable upon conversion or exchange of such securities have not
been issued when such securities are no longer outstanding, then the number of shares of Common Stock issuable upon exercise of each Class C-1 Warrant shall promptly be readjusted to what it would have been had the adjustment upon the issuance of
such securities been made on the basis of the actual number of shares of Common Stock issued upon conversion or exchange of such securities. 

This Section 7(e) does not apply to convertible securities issued in a bona fide public offering. 

(f) Current Market Price. In Sections 7(b), (c), (d) and (e) and Section 10, the current market price per share of
Common Stock on any date is the average of the Closing Prices (as defined below) of the Common Stock for 20 consecutive trading days commencing 30 trading days before the date in question. The term “Closing Price” shall mean, for each
trading day, (A) in the case of a security listed or admitted for trading on any United States national securities exchange or quotation system, the last reported sale price regular way, on such day, or if no sale takes place on such day, the
average of the closing bid and asked prices in the over-the-counter market as furnished by any New York Stock Exchange member firm selected from time to time by the Company for that purpose, (B) in the case of a security not then listed or
admitted for trading on any United States national securities exchange or quotation system and as to which no such reported sale price or bid or asked prices are available, the average or the reported high bid and low asked prices on such day, as
reported by a reputable quotation service, or a newspaper of general circulation in the Borough of Manhattan, City and State of New York, customarily published on each Business Day, designated by the Company, or if there shall be no bid and asked
prices on such day, the average of the high bid and low asked prices, as so reported, on the most recent day (not more than thirty (30) days prior to the date in question) for which prices have been so reported and (C) if there are not bid
and asked prices reported during the thirty (30) days prior to the date in question, the Closing Price will be the Fair Market Value. “Fair Market Value” means, as to any share of Common Stock, the cash price at which a willing
seller would sell and a willing buyer would buy such share of Common Stock in an arm’s length negotiated transaction without time constraints, as determined by a nationally recognized valuation firm selected by mutual agreement of the Initial
Holders and the Company, whose determination shall be final and binding on the parties hereto. The fees and expenses of such valuation firm shall be paid by the Company. 

(g) Consideration Received. For purposes of any computation respecting consideration received pursuant to Sections 7(b), (d) or
(e), the following shall apply: 
 (A) in the case of the issuance of shares of Common Stock for cash, the consideration
shall be the gross proceeds to the Company from such issuance, which shall not include any deductions for any commissions, discounts, other expenses incurred by the Company in connection therewith or amounts paid or payable for accrued interest or
accrued dividends; 
 (B) in the case of the issuance of shares of Common Stock for a consideration in whole or in part other
than cash or, subject to clause (C) below, securities, the consideration other than cash shall be deemed to be the fair market value thereof as determined in good faith by the Board (irrespective of the accounting treatment thereof), whose
determination shall be conclusive; 

 (C) in the case of the issuance of shares of Common Stock for a consideration in
whole or in part consisting of securities, the value of any securities shall be deemed to be: (x) if traded on a securities exchange or through the Nasdaq Global Market, the average of the closing prices of the securities on such quotation
system over the 30-day period ending three days preceding the day in question, (y) if actively traded over-the-counter, the average of the closing bid or sale prices (whichever is applicable) over the 30-day period ending three days preceding
the day in question and (z) if there is no active public market, the fair market value thereof, determined as provided in clause (B) above; and 

(D) in the case of the issuance of securities convertible into, exercisable for or exchangeable for shares of Common Stock, the
aggregate consideration received therefor shall be deemed to be the consideration received by the Company for the issuance of such securities plus the additional minimum consideration, if any, to be received by the Company upon the conversion,
exercise or exchange thereof for the maximum number of shares used to calculate the adjustment (the consideration in each case to be determined in the same manner as provided in clauses (A) through (C) of this Section 7(g). 

(h) When De Minimis Adjustment May Be Deferred. 

No adjustment in the number of shares of Common Stock issuable upon exercise of each Warrant need be made unless the adjustment would require
an increase or decrease of at least 1% in such number. Any adjustments that are not made shall be carried forward and taken into account in any subsequent adjustment. 

All calculations under this Section 7 shall be made to the nearest cent or to the nearest 1/100th of a share, as the case may be. 

(i) When No Adjustment Required. No adjustment need be made for a transaction referred to in Sections 7(b), (c), (d) or
(e) if the relevant Warrant holders are to participate, without requiring the Warrants to be exercised, in the transaction on a basis and with notice that the Board reasonably determines to be fair and appropriate in light of the basis and
notice on which holders of Common Stock participate in the transaction. A Warrant holder’s having the opportunity to participate in a transaction shall not of itself trigger the applicability of this subsection (i) in the absence of actual
participation (or election to participate) in such transaction by such Warrant holder. 
 To the extent the relevant Warrants become
convertible into cash, no adjustment need be made thereafter as to the amount of cash into which such Warrants are exercisable. Interest will not accrue on the cash. 

(j) Notice of Adjustment. Upon any adjustment of the number of shares or Exercise Price pursuant to Section 7, the Company shall
within five days, mail to registered holders of the applicable Warrants, first class, postage prepaid, a notice of the adjustment together with a certificate from the Company’s independent public accountants briefly stating the facts requiring
the adjustment and the manner of computing it. 

 (k) Notice of Certain Transactions. If: 

 

	 	(i)	the Company takes any action that would require an adjustment in the number of shares of Common Stock issuable upon exercise of a Warrant or Exercise Price pursuant to Sections 7(a), (b), (c), (d) or (e) and
if the Company does not arrange for the applicable Warrant holders to participate pursuant to Section 7(i); 

  

	 	(ii)	the Company takes any action that would require a supplemental Warrant Agreement pursuant to Section 7(l); or 

  

	 	(iii)	there is a liquidation or dissolution of the Company, 

 the Company shall mail to registered holders of the
applicable Warrants, first class, postage prepaid, a notice stating the proposed record date for a dividend or distribution or the proposed effective date of a subdivision, combination, reclassification, consolidation, merger, transfer, lease,
liquidation or dissolution. The Company shall mail the notice at least 15 days before such date. Failure to mail the notice or any defect in it shall not affect the validity of the transaction. 

(l) Reorganization of Company. If the Company consolidates or merges with or into, or transfers or leases all or substantially all its
assets to, any person, upon consummation of such transaction the Warrants shall automatically become exercisable for the kind and amount of securities, cash or other assets which the holder of a Warrant would have owned immediately after the
consolidation, merger, transfer or lease if such holder had exercised the Warrant immediately before the effective date of the transaction; provided that if the holders of Common Stock were entitled to exercise a right of election as to the
kind or amount of securities, cash or other assets receivable upon such consolidation or merger, then the holders of the Warrants shall be entitled to exercise such right of election. Concurrently with the consummation of any such transaction, the
corporation or other entity formed by or surviving any such consolidation or merger if other than the Company, or the person to which such sale or conveyance shall have been made, shall enter into a supplemental Warrant Agreement so providing and
further providing for adjustments which shall be as nearly equivalent as may be practical to the adjustments provided for in this Section. The successor Company shall mail to Warrant holders a notice describing the supplemental Warrant Agreement.

 If the issuer of securities deliverable upon exercise of Warrants under the supplemental Warrant Agreement is an affiliate of the formed,
surviving, transferee or lessee corporation, that issuer shall join in the supplemental Warrant Agreement. 
 If this Section 7(l)
applies, Sections 7(a), (b), (c), (d) and (e) do not apply. 
 (m) When Issuance or Payment May Be Deferred. In any case in
which this Section 7 shall require that an adjustment in the number of shares of Common Stock issuable upon exercise of a Warrant be made effective as of a record date for a specified event, the Company may elect to defer until the occurrence
of such event issuing to the holder of any applicable Warrant exercised after such record date the Warrant Shares and other capital stock of the Company, if any, issuable upon such exercise over and above the Warrant Shares and other capital stock
of the Company, if any, issuable upon such exercise on the basis of the number of 

 
shares of Common Stock issuable upon exercise of the Warrant; provided, however, that the Company shall deliver to such holder a due bill or other appropriate instrument evidencing such
holder’s right to receive such additional Warrant Shares, other capital stock and cash upon the occurrence of the event requiring such adjustment. 

(n) Adjustment in Exercise Price. 

Upon each event that provides for an adjustment of the number of shares of Common Stock issuable upon exercise of a Warrant pursuant to this
Section 7, each applicable Warrant outstanding prior to the making of the adjustment shall thereafter have an adjusted applicable Exercise Price (calculated to the nearest ten millionth) obtained from the following formula: 

 

							
		  	E1 = E x	  	   N  
	  	
		  	  	N1	  	

 where: 

							
				
		  	E1	  	=	  	the adjusted Exercise Price.
				
		  	E	  	=	  	the Exercise Price prior to adjustment.
				
		  	N1	  	=	  	the adjusted number of Warrant Shares issuable upon exercise of an applicable Warrant by payment of the adjusted Exercise Price.
				
		  	N	  	=	  	the number of Warrant Shares previously issuable upon exercise of an applicable Warrant by payment of the Exercise Price prior to adjustment.

 Following any adjustment to the applicable Exercise Price pursuant to this Section 7, the amount payable,
when adjusted and together with any consideration allocated to the issuance of the applicable Warrants, shall never be less than the par value per Warrant Share at the time of such adjustment. Such adjustment shall be made successively whenever any
event listed above shall occur. The Company hereby agrees with each holder of Warrants that it shall not increase the par value of the Common Stock above its current par value of $.01 per share. 

(o) Form of Warrants. Irrespective of any adjustment in the number or kind of shares issuable upon the exercise of the Warrants or the
payment of the applicable Exercise Price, Warrant Certificates theretofore or thereafter issued may continue to state the same number and kind of shares and the same applicable Exercise Price as are stated in the Warrant Certificates initially
issuable pursuant to this Agreement without affecting the number and kind of such shares issuable upon the exercise of the Warrants or payment of the applicable Exercise Price. 

(p) Cash Distributions. If the Company distributes cash as a dividend or other distribution to all holders of its Common Stock no
adjustment shall be made to the number of shares of Common Stock issuable upon the exercise of each Warrant pursuant to this Section 7. 

 8. Exchange and Replacement of Warrant Certificates. Each Warrant Certificate is
exchangeable without expense, upon the surrender thereof by the registered holder thereof at the principal executive office of the Company, for a new Warrant Certificate of like tenor and date representing in the aggregate the right to purchase the
same number of Warrant Shares in such denominations as shall be designated by the registered holder thereof at the time of such surrender. Upon receipt by the Company of evidence reasonably satisfactory to it of the loss, theft, destruction or
mutilation of any Warrant Certificate, and, in case of loss, theft or destruction, of indemnity reasonably satisfactory to it, and reimbursement to the Company of all reasonable expenses incidental thereto, and upon surrender and cancellation of
such Warrant Certificate, if mutilated, the Company will make and deliver a new Warrant Certificate of like tenor, in lieu thereof. 
 9.
Payment of Taxes. The Company will pay all documentary stamp taxes attributable to the initial issuance of the Warrants and of the Warrant Shares upon the exercise of Warrants; provided, however, that the Company shall not be required to pay
any tax or taxes which may be payable in respect of any transfer involved in the issuance of any Warrant Certificates or any certificates for Warrant Shares in a name other than that of the registered holder of such Warrant Certificate, and the
Company shall not be required to issue or deliver such Warrant Certificates unless or until the person or persons requesting the issuance thereof shall have paid to the Company the amount of such tax or shall have established to the reasonable
satisfaction of the Company that such tax has been paid. 
 10. Issuance of Additional Warrants. If the Company issues
(i) shares of Common Stock for a consideration per share less than the current Fair Market Value per share of the Company’s Common Stock on the date the Company fixes the offering price of such additional shares, (ii) any securities
convertible into or exchangeable for Common Stock (other than securities issued in transactions described in Sections 7(a) and 7(c)) for a consideration per share of Common Stock initially deliverable upon conversion or exchange of such securities
less than the current Fair Market Value per share on the date of issuance of such securities, or (iii) or otherwise distributes any rights, options or warrants to all holders of its Common Stock entitling them to purchase shares of Common Stock
at a price per share less than the current Fair Market Value per share on the record date for determining holders entitled to the distribution of rights, options or warrants, each Holder of Class A Warrants and/or Class C-2 Warrants shall be
entitled to purchase from the Company, and the Company shall sell to such Holder, additional warrants to purchase the number of shares (the “Additional Warrant Shares”) of Class A Common Stock (in the case of the Holder of the
Class A Warrants) (the “Additional Class A Warrants”) or Class C Common Stock (in the case of the Holder of the Class C-2 Warrants) (the “Additional Class C-2
Warrants”, and together with the Additional Class A Warrants, the “Additional Warrants”), at the exercise price of $0.01 per share, that such Holder would have been entitled to purchase if such Holder had exercised its
preemptive rights in full under Section 19 of the Stockholders’ Agreement with respect to the number of shares of Common Stock underlying the Class A Warrants and Class C-2 Warrants, respectively. The price paid by each Holder for the
Additional Warrants shall equal the product of (x) the offering price, exercise price or consideration per share of Common Stock, as applicable, issued or issuable (upon conversion or exercise, as applicable) by the Company and (y) the
number of Additional Warrant Shares underlying such Additional Class A Warrants or Additional Class C-2 Warrants, as applicable. 

 11. Legends. (a) This Warrant and the Warrant Shares issuable upon exercise hereof
are subject in all respects to the terms and conditions of the Stockholders’ Agreement. No transfer, sale, assignment, hypothecation or other disposition of this Warrant or the Warrant Shares issuable upon exercise hereof may be made except in
accordance with the provisions of the Stockholders’ Agreement. The holder of the Warrant, by acceptance of this Warrant, agrees to be bound by the applicable provisions of the Stockholders’ Agreement and all applicable benefits of the
Stockholders’ Agreement shall inure to such holder. 
 (b) Except as otherwise provided in this Section 11, each Warrant
Certificate and certificate for Warrant Shares initially issued upon the exercise of this Warrant, and each Warrant Certificate and certificate for Warrants or Warrant Shares issued to any transferee of any such certificates, shall be stamped or
otherwise imprinted with a legend in substantially the following form: 
 “THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE
WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF
THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE
“COMPANY”), CAROLA HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE WARRANT AGREEMENT REFERRED TO HEREIN.” 
 (c) Notwithstanding the provisions of Section 11(b), (i) the Company shall
deliver certificates for Warrants or Warrant Shares without the second paragraph of the legend set forth in such paragraph if the securities referred to in such paragraph shall have been registered under the Securities Act or if such legend is
otherwise not required under the 

 
Securities Act, and if such legend has been set forth on any previously delivered certificates, such legend shall be removed from any certificates at the request of the holder if the securities
referred to in such clause have been registered under the Securities Act, or upon delivery of a legal opinion by such holder from counsel reasonably satisfactory to the Company that such legend is not otherwise required under the Securities Act, and
(ii) the Company shall deliver certificates for Warrants or Warrant Shares without the first and third paragraphs of the legend set forth in such clause if such legend is no longer required pursuant to the terms of the Stockholders’
Agreement. 
 12. Notices. All notices, requests, consents and other communications hereunder shall be in writing and shall be deemed
to have been duly made when delivered by hand or sent by facsimile transmission (with receipt confirmed), or, if timely delivered to an air courier guaranteeing overnight delivery service, on the next business day, or five business days after being
deposited in the mail, first class, certified or registered, postage prepaid, return receipt requested, in each case addressed as follows (or to such other place or places as either of the parties shall designate by written notice to the other):

  

	 	(i)	if to registered holder, to the address set forth on the Warrant Register maintained by the Company; and 

  

	 	(ii)	if to the Company, to: 

 Virgin America Inc. 

555 Airport Blvd., 
 Suite 200

 Burlingame, CA 94010 

Attention: General Counsel 

Telecopier: (###) ###-#### 
 13.
Amendment. The Company with the consent of the registered holders of at least a majority of each class of the then-outstanding and unexercised Class A Warrants, the Class C-1 Warrants and the Class C-2 Warrants may amend or supplement
this Agreement or waive compliance by the Company in a particular instance with any provision of this Agreement; provided that without the consent of each registered holder affected, no such amendment shall (a) with respect to Warrants
held by a non-consenting registered holder, increase the applicable Exercise Price or decrease the number of Warrant Shares issuable upon exercise of any Warrant (other than pursuant to adjustments otherwise provided for in this Agreement, including
the adjustments provided for in Section 7 hereof), (b) alter the Company’s obligation to issue Warrant Shares upon exercise of the underlying Warrant (other than pursuant to adjustments otherwise provided for in this Agreement,
including the adjustments provided for in Section 7 hereof), (c) shorten the expiration date of the Warrants, (d) waive the application of the adjustment provisions contained in Section 7 in connection with any events to which
such provisions apply or otherwise modify the adjustment provisions contained in Section 7 in a manner that would have an adverse economic impact on the holders, or (e) otherwise be effective against such holder unless such amendment,
modification or waiver does not treat such holder differently in any respect from any other holder. The Company shall not amend, modify or change any provision of its articles or certificate of incorporation or bylaws to the extent that such
amendment, modification or change would result in the Company being unable to perform or comply with its obligations hereunder. 

 14. Successors. Except as otherwise provided herein, all the covenants and provisions of
this Agreement by or for the benefit of the Company and the registered holders of the Warrants shall inure to the benefit of their respective successors and assigns hereunder. 

15. Governing Law. This Agreement and each Warrant Certificate issued hereunder shall be deemed to be a contract made under the laws of
the State of New York and for all purposes shall be construed in accordance with the laws of such State. 
 16. Benefits of This
Agreement. Nothing in this Agreement shall be construed to give to any person other than the Company and the registered holders of the unexercised Warrant Certificates any legal or equitable right, remedy or claim under this Agreement, and this
Agreement shall be for the sole and exclusive benefit of the Company and such registered holders. Prior to the exercise of the Warrants, no holder of a Warrant Certificate, as such, shall be entitled to any rights of a stockholder of the Company,
including, without limitation, the right to receive dividends or subscription rights, the right to vote, to consent, to exercise any preemptive right, to receive any notice of meetings of stockholders for the election of directors of the Company or
any other matter or to receive any notice of any proceedings of the Company, except as may be specifically provided for herein. The holders of the Warrants are not entitled to share in the assets of the Company in the event of the liquidation,
dissolution or winding up of the Company’s affairs. 
 17. Counterparts. This Agreement may be executed in any number of
counterparts and each of such counterparts shall for all purposes be deemed to be an original, and such counterparts shall together constitute one and the same instrument. 

18. Headings. The headings in this Agreement are intended solely for convenience of reference and shall be given no effect in the
construction or interpretation of this Agreement. 
 19. Remedies. The Company and the holder hereof each stipulates that the
remedies at law of each party hereto in the event of any default or threatened default by the other party in the performance or compliance with any of the terms of this Warrant are not and will not be adequate and that, to the fullest extent
permitted by law, such terms may be specifically enforced by a decree for the specific performance of any agreement contained herein or by an injunction against a violation of any of the terms hereof or otherwise. 

20. Severability. The provisions of this Agreement are severable, and if any clause or provision shall be held invalid, illegal or
unenforceable in whole or in part in any jurisdiction, then such invalidity or unenforceability shall affect in that jurisdiction only such clause or provision, or part thereof, and shall not in any manner affect such clause or provision in any
other jurisdiction or any other clause or provision of this Agreement in any jurisdiction. 
 21. Effective Date. This Agreement
shall become effective immediately upon the Second Closing (as defined in the Subscription Agreement). 
 [Signature Page
Follows] 

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Second Closing Warrant Agreement to
be duly executed as of the day and year first above written. 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	/s/ Holly Nelson
		 	Name: Holly Nelson
		 	Title: SVP & Chief Financial Officer

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Second Closing
Warrant Agreement to be duly executed as of the day and year first above written. 
  

			
	CAROLA HOLDINGS LIMITED
		
	By:	 	/s/ Hanry Kierulf
		 	Name: Henry Kierulf
		 	Title: Alternate director to Paul Fauvel
		
		 	 Address:
 Carola Holdings Limited

c/o La Motte Chambers
 St. Helier

Jersey, JE1 1BJ
 Channel Islands

Attn: Paul Rauvel/Ian Cuming
 Fax: +##-####-######

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Second Closing
Warrant Agreement to be duly executed as of the day and year first above written. 
  

			
	VAI MANAGEMENT, LLC
		
	By:	 	 CYRUS AVIATION INVESTOR, LLC,
 Its Managing
Member

		
	By:	 	 CYRUS AVIATION PARTNERS II, L.P.,
 Its Sole
Member

		
	By:	 	 CYRUS CAPITAL PARTNERS GP, L.L.C.,
 Its
General Partner

		
	By:	 	/s/ Stephen C. Freidheim
		 	Name: Stephen C. Freidheim
		 	Title: Managing Member

 THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE
HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA
HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-1 

CLASS A WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, VAI Management, LLC, having an address at 399 Park Avenue, 39th Floor, New York, NY, 10022 (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on
May 31, 2037, up to 292,982 fully-paid and non-assessable shares (subject to adjustment in certain events as provided in Section 7 of the Warrant Agreement) of Class A Common Stock, $0.01 par value (“Class A Common
Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the “Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Warrant Agreement (the “Exercise
Price”), upon surrender of this Warrant Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms and conditions
set forth herein and in the Amended and Restated Second Closing Warrant Agreement dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Warrant Agreement”). Payment of the
applicable Exercise Price shall be made in cash. 

 The Warrants evidenced by this Warrant Certificate may be exercised at such times and in such
amounts as are provided for in the Warrant Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the
Warrant Agreement, which Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of
the Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Warrant Agreement may be obtained by the holder(s) hereof upon written request
directed to the Company. 
 The Warrant Agreement provides that upon the occurrence of certain events, the type and/or number of the
Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Warrant
Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Warrant Agreement shall have the meanings assigned to them in the Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	 
		
	Name:	 	 
		
	Title:	 	 

 [Signature page to VAI Management, LLC Class A Warrant] 

 Annex I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                     hereby sells, assigns and transfers unto
                    , whose address is
                    , this Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute
and appoint                      attorney to transfer the within Warrant Certificate on the books of the within-named Company, with full power
of substitution. 
  

							
				
	Dated:	  		  	Signature:	  	 
				
		  		  		  	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		  		  		  	  
 (Insert Social Security or
Other
Identifying Number of Holder)

 Annex II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                     shares of Common Stock and herewith makes payment of the Exercise Price by applying
$            , in cash, in accordance with the terms of the Warrant Agreement. 

The undersigned requests that a certificate for such shares of Common Stock be registered in the name of
                    , whose address is
                     and that such certificate be delivered to
                    whose address is
                    . 
  

							
				
	Dated:	  		 	Signature: 	  	 
				
		  		 		  	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	(Insert Social Security or Other
Identifying Number of Holder)	  		 		  	  

 THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE
HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA
HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-2 

CLASS A WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on May 31, 2037, up to 32,553 fully-paid and non-assessable
shares (subject to adjustment in certain events as provided in Section 7 of the Warrant Agreement) of Class A Common Stock, $.01 par value (“Class A Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the
“Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Warrant Agreement (the “Exercise Price”), upon surrender of this Warrant Certificate, together with
the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms 

 
and conditions set forth herein and in the Amended and Restated Second Closing Warrant Agreement, dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management,
LLC (the “Warrant Agreement”). Payment of the applicable Exercise Price shall be made in cash. 
 The Warrants evidenced by
this Warrant Certificate may be exercised at such times and in such amounts as are provided for in the Warrant Agreement. 
 The Warrants
evidenced by this Warrant Certificate are issued pursuant to the Warrant Agreement, which Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights,
limitation of rights, obligations, duties and immunities thereunder of the Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Warrant
Agreement may be obtained by the holder(s) hereof upon written request directed to the Company. 
 The Warrant Agreement provides that upon
the occurrence of certain events, the type and/or number of the Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Warrant
Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Warrant Agreement shall have the meanings assigned to them in the Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	 
	Name:	 	 
	Title:	 	 

 [Signature page to Carola Holdings Class A Warrant] 

 Annex I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                     hereby sells, assigns and transfers unto
                    , whose address is
                    , this Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute
and appoint                      attorney to transfer the within Warrant Certificate on the books of the within-named Company, with full power
of substitution. 
  

							
				
	Dated:	  		  	Signature:  	  	 
				
		  		  		  	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		  		  		  	  
 (Insert Social Security or
Other
 Identifying Number of Holder)

 Annex II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                     shares of Common Stock and herewith makes payment of the Exercise Price by applying
$            , in cash, in accordance with the terms of the Warrant Agreement. 

The undersigned requests that a certificate for such shares of Common Stock be registered in the name of
                    , whose address is
                     and that such certificate be delivered to
                     whose address is
                    . 
  

							
				
	Dated:	  		  	Signature:  	  	 
				
		  		  		  	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	 (Insert Social Security or Other
 Identifying
Number of Holder)
	  		  		  	  

 THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE
HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA
HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-3 

CLASS C WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on the Expiration Date (as defined in the Amended and Restated Second Closing
Warrant Agreement, dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Warrant Agreement”)), up to 4,344,043 fully-paid and non-assessable shares (subject to adjustment in
certain events as provided in Section 7 of the Warrant Agreement) of Class C Common Stock, $.01 par value (“Class C Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the “Company”), at the
exercise price of (1) if paid in cash, $13.50 per share, subject to adjustment as provided in Section 7 or the Warrant Agreement 

 
or (2) if paid through amounts received by the warrantholder upon the contemporaneous redemption of Subordinated Notes (as defined in the Subscription Agreement), the sum of (x) $13.50
per share and (y) the aggregate amount of all paid-in-kind interest, including any paid-in-kind interest added to the outstanding principal amount of the Subordinated Notes, paid on the Subordinated Notes and all previously accrued but unpaid
interest on the Subordinated Notes paid out in connection with such redemption divided by the aggregate number of Class C-1 Warrant Shares being purchased on any particular exercise of Class C-1 Warrants (the price in (1) or (2), as
applicable, the “Exercise Price”), upon surrender of this Warrant Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but
subject to the terms and conditions set forth herein and in the Warrant Agreement. Payment of the applicable Exercise Price shall be made (A) by applying a corresponding principal amount and accrued but unpaid interest of the Subordinated Notes
(as defined in the Subscription Agreement) issued pursuant to the Subordinated Note Agreement, dated as of May 31, 2007, between the Company and Virgin (as amended, the “Subordinated Note Agreement”), to the extent permitted by
the terms of the Subordinated Notes, held by any holder (regardless of whether such amount is then due or whether such Subordinated Notes are then redeemable) and (B) in cash, if and to the extent that the amount of principal and accrued but
unpaid interest on the Subordinated Notes is insufficient to pay the full amount of the Exercise Price. 
 The Warrants evidenced by this
Warrant Certificate may (or shall, if applicable) be exercised at such times and in such amounts as are provided for in the Warrant Agreement. 

The Warrants evidenced by this Warrant Certificate are issued pursuant to the Warrant Agreement, which Warrant Agreement is hereby
incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of the Company and the holders (the words
“holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Warrant Agreement may be obtained by the holder(s) hereof upon written request directed to the Company. 

The Warrant Agreement provides that upon the occurrence of certain events, the type and/or number of the Company’s securities issuable
upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 
 Upon due presentment for
registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the
transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Warrant Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable
by the Company pursuant to Section 9 of the Warrant Agreement. 
 Upon the exercise of less than all of the Warrants evidenced by this
Certificate, the Company shall forthwith issue to the holder hereof a new Warrant Certificate representing such numbered of unexercised Warrants. 

 The Company may deem and treat the registered holder(s) hereof as the absolute owner(s) of this
Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes, and the Company shall not be
affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined herein and are defined in the
Warrant Agreement shall have the meanings assigned to them in the Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	 
		
	Name:	 	 
		
	Title:	 	 

 [Signature page to Carola Holdings Class C Warrant] 

 Annex I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                     hereby sells, assigns and transfers unto
                    , whose address is
                    , this Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute
and appoint                      attorney to transfer the within Warrant Certificate on the books of the within-named Company, with full power
of substitution. 
  

							
	Dated:	 		 	Signature:  	 	 
				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	 
		 		 		 	(Insert Social Security or Other
Identifying Number of Holder)

 Annex II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                     shares of Common Stock and herewith makes payment of the Exercise Price by applying [the corresponding principal amount,
including any paid-in-kind interest added to the outstanding principal amount of the Subordinated Notes, and accrued but unpaid interest and of $              of the Subordinated
Notes issued pursuant to the Subordinated Note Agreement] [and/or] [$            , in cash], accordance with the terms of the Warrant Agreement. 

The undersigned requests that a certificate for such shares of Common Stock be registered in the name of
                    , whose address is
                     and that such certificate be delivered to
                     whose address is
                    . 
  

							
	Dated:	 		 	Signature:  	 	 
				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	(Insert Social Security or Other
Identifying Number of Holder)	 		 		 	 

 THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE
HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA
HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-4 

CLASS C WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5.00 P.M, New York time on May 31, 2037, up to 1,346,065 fully-paid and non-assessable
shares (subject to adjustment in certain events as provided in Section 7 of the Warrant Agreement) of Class C Common Stock, $.01 par value (“Class C Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the
“Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Warrant Agreement (the “Exercise Price”), upon surrender of this Warrant Certificate, together with
the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms and conditions set forth herein and in the Amended and Restated Second Closing Warrant
Agreement dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Warrant Agreement”). Payment of the applicable Exercise Price shall be made in cash. 

 The Warrants evidenced by this Warrant Certificate may be exercised at such times and in such
amounts as are provided for in the Warrant Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the
Warrant Agreement, which Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder
of the Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Warrant Agreement may be obtained by the holder(s) hereof upon written request
directed to the Company. 
 The Warrant Agreement provides that upon the occurrence of certain events, the type and/or number of the
Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Warrant
Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Warrant Agreement shall have the meanings assigned to them in the Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	 
		
	Name:	 	 
		
	Title:	 	 

 [Signature page to Carola Holdings Class C Warrant] 

 Annex I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                     hereby sells, assigns and transfers unto
                    , whose address is
                    , this Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute
and appoint                      attorney to transfer the within Warrant Certificate on the books of the within-named Company, with full power
of substitution. 
  

							
	Dated:	 		 	Signature:  	 	 
				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	 
		 		 		 	 (Insert Social Security or Other
 Identifying
Number of Holder)

 Annex II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                     shares of Common Stock and herewith makes payment of the Exercise Price by applying
$            , in cash, in accordance with the terms of the Warrant Agreement. 

The undersigned requests that a certificate for such shares of Common Stock be registered in the name of
                    , whose address is
                     and that such certificate be delivered to
                     whose address is
                    . 
  

							
	Dated:	 		 	Signature:  	 	 
				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	 
		 		 		 	 (Insert Social Security or Other
 Identifying
Number of Holder)EX-10.39

 Exhibit 10.39 
  

 
 AMENDED AND RESTATED 

THIRD CLOSING WARRANT AGREEMENT 

Dated as of January 12, 2010 

among 
 VIRGIN AMERICA INC.,

 CAROLA HOLDINGS LIMITED 

and 
 VAI MANAGEMENT,
LLC 
  
  

 This AMENDED AND RESTATED THIRD CLOSING WARRANT AGREEMENT (this “Agreement”),
dated as of January 12, 2010, among Virgin America Inc., a Delaware corporation (the “Company”), Carola Holdings Limited, a limited liability company organized under the laws of the British Virgin Islands
(“Virgin”) and VAI Management, LLC, a Delaware limited liability company (“Investor Managing Member” and, together with Virgin, the “Initial Holders”), is effective as of May 31, 2007.
Capitalized terms used herein but not defined herein have the meanings ascribed to such terms in the Third Closing Subscription Agreement, dated as of July 31, 2007, as may be amended (the “Third Closing Subscription
Agreement”), by and among the Company, Virgin, Investor Managing Member and VAI Partners LLC, a Delaware limited liability company (the “Investor”). 

WHEREAS, on July 31, 2007, the Company, Carola and VAM Partners, LLC, a Delaware limited liability company (“VAM”)
entered into that certain Third Closing Warrant Agreement (the “Prior Agreement”); 
 WHEREAS, pursuant to the Assignment
and Transfer Agreement, dated as of the date hereof, among the Company, Carola, VML, Investor, Investor Managing Member, VAM and the other parties named therein, VAM agreed to assign and transfer to Investor Managing Member all of the warrants
issued to it by the Company pursuant to the Prior Agreement and to transfer its rights and obligations under the Prior Agreement, and Investor Managing Member accepted such assignment and transfer; 

WHEREAS, the Company, Carola and Investor Managing Member desire to make certain other clarifications to the Prior Agreement and agree to
amend, restate and supersede the Prior Agreement as set forth in this Agreement; and 
 WHEREAS, the warrants issued under the Prior
Agreement shall be governed by this Agreement, effective as of July 31, 2007. 
 NOW, THEREFORE, the parties hereto hereby agree as
follows: 
 1. Grant. 

(a) The Company granted on the Third Closing Date (as defined in the Third Subscription Agreement) to VAM (as predecessor in interest to the
Investor Managing Member) warrants (the “Class A Warrants”) which shall entitle the registered holder thereof to purchase from the Company, at any time and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 209,273 shares, (such shares, together with the shares purchasable by Virgin pursuant to Section 1(b)
below, subject to adjustment as provided in Section 7, the “Class A Warrant Shares”) of Class A Common Stock, par value $0.01 per share, of the Company (the “Class A Common Stock”), at the exercise price
of $0.01 per share, subject to adjustment as provided in Section 7 (the “Class A Exercise Price”), all subject to the terms and upon the conditions set forth herein. 

(b) The Company granted on the Third Closing Date to Virgin Class A Warrants which shall entitle the registered holder thereof to
purchase from the Company, at any time and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 23,252 shares of
Class A Common Stock, at the Class A Exercise Price, all subject to the terms and upon the conditions set forth herein. 

  
 2 

 (c) The Company granted on the Third Closing Date to Virgin warrants (the “Class C-3
Warrants”) which shall entitle the registered holder thereof to purchase from the Company, subject to Section 3(b) below, until 5:00 P.M., New York time, on the thirteen-year anniversary of the Third Closing Date (the “C-3
Expiration Date”) 3,102,888 shares (the “Class C-3 Warrant Shares”) of Class C Common Stock, par value $.01 per share, of the Company (“Class C Common Stock” and, together with the Class A Common
Stock, the “Common Stock”), at the exercise price of (1) if paid in cash, $13.50 per share, subject to adjustment as provided in Section 7 or (2) if paid through amounts received by the warrantholder upon the
contemporaneous redemption of the Third Closing Subordinated Notes (as defined in the Third Closing Subscription Agreement), the sum of (x) $13.50 per share and (y) the aggregate amount of all paid-in-kind interest, including any
paid-in-kind interest added to the outstanding principal amount of the Third Closing Subordinated Notes, paid on the Third Closing Subordinated Notes and all previously accrued but unpaid interest on the Third Closing Subordinated Notes paid out in
connection with such redemption divided by the aggregate number of Class C-3 Warrant Shares being purchased on any particular exercise of Class C-3 Warrants (such amount in (1) or (2), as applicable, the “Class C-3 Exercise
Price”), all subject to the terms and upon the conditions set forth herein; provided, however, that if within 10 days of the C-3 Expiration Date any of the Class C-3 Warrants are unexercisable due to the Foreign Ownership
Limitations (as defined below), the Company may elect to, by no later than 5 days prior to the C-3 Expiration Date, extend the maturity date (and shall promptly (and in no event later than the C-3 Expiration Date) notify the holders of the
Class C-3 Warrants with respect thereto) to a date on which the Company reasonably believes that the Class C-3 Warrants may be exercised in full (the C-3 Expiration Date or such extended maturity date, as applicable, the “Expiration
Date”). Notwithstanding anything herein to the contrary, each Class C-3 Warrant not exercised or deemed exercised on or prior to the earlier of (A) the Expiration Date or (B) the completion of a Company Sale Redemption (as defined
in the Additional Subordinated Note Agreement, dated as of July 31, 2007, between the Company and Virgin (as amended, the “Additional Subordinated Note Agreement”)) shall become invalid and all rights thereunder, and all rights
in respect thereof under this Agreement, shall cease as of that time. 
 (d) The Company granted on the Third Closing Date to Virgin
warrants (the “Class C-4 Warrants” and, together with the Class A Warrants and the Class C-3 Warrants, the “Warrants”) which shall entitle the registered holder thereof to purchase from the Company, at any time
and from time to time prior to the 30th anniversary of the effective date of this Agreement, subject to Section 3(a) below, 480,738 shares (the “Class C-4 Warrant Shares”
and, together with the Class A Warrant Shares and the Class C-3 Warrants Shares, the “Warrant Shares”) of Class C Common Stock at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 (the
“Class C-4 Exercise Price” and, together with the Class A Exercise Price and the Class C-3 Exercise Price, the “Exercise Price”), all subject to the terms and upon the conditions set forth herein. 

  
 3 

 2. Warrant Certificates. 

(a) The Class A Warrants shall be evidenced by certificates issued pursuant to this Agreement (the “Class A Warrant
Certificates”) in the forms set forth in Exhibit A hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

(b) The Class C-3 Warrants shall be evidenced by certificates issued pursuant to this Agreement (the “Class C-3 Warrant
Certificates”) in the form set forth in Exhibit B hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

(c) The Class C-4 Warrants shall be evidenced by certificates issued pursuant to this Agreement (the “Class C-4 Warrant
Certificates”) in the form set forth in Exhibit C hereto, with such appropriate insertions, omissions, substitutions, and other variations as are required or permitted by this Agreement. 

3. Exercise Period. 
 (a)
The Class A Warrants and the Class C-4 Warrants shall be exercisable upon the earlier to occur of (i) a Qualified Public Offering (as defined in the Third Amended and Restated Stockholders’ Agreement, dated as of the date hereof, as
may be amended, restated or superseded from time to time (the “Third Amended and Restated Stockholders’ Agreement”), among the Company, Virgin, the Investor, the Investor Managing Member and the other parties named therein and
(ii) the third anniversary of the Second Closing Date; provided, however, that neither the Class A Warrants nor the Class C-4 Warrants shall be exercisable until the earlier to occur of the (x) permissibility of such
exercise under the United States federal statutory and/or regulatory restrictions with respect to the ownership and control of U.S. airlines by non-United States Citizens (the “Foreign Ownership Limitations”) or (y) the
transfer of such warrants in accordance with the terms of the Third Amended and Restated Stockholders’ Agreement to any holder who is a Citizen of the United States (a “U.S. Citizen”) as defined in Section 40102(a)(15) of
Title 49 of the United States Code, as in effect on the date in question, or any successor statute or regulation, as interpreted by the United States Department of Transportation (the “DOT’) or any other federal department or agency
at the time administering the federal aviation laws codified in title 49 of the United States Code in applicable precedent. 
 (b) The Class
C-3 Warrants shall not be exercisable until the earlier to occur of the (x) permissibility of such exercise under the Foreign Ownership Limitations or (y) the transfer of such warrants in accordance with the terms of the Third Amended and
Restated Stockholders’ Agreement to any holder who is a U.S. Citizen; provided, however, that transfer of such warrants to a holder who is a U.S. Citizen shall not be permitted unless simultaneously with such transfer the
transferor also transfers the Third Closing Subordinated Notes with an aggregate principal amount equal to the aggregate exercise price of all Class C-3 Warrants subject to such transfer. Notwithstanding anything herein to the contrary but subject
to compliance with clause (x) in the preceding sentence, upon the conversion of any shares of Preferred Stock to Class A Common Stock, the holder(s) of the Class C-3 Warrants shall be required to exercise Class C-3 Warrants and to
purchase, in the aggregate, that number of Class 

  
 4 

 
C-3 Warrant Shares equal to the number of shares of Class A Common Stock issuable upon conversion of such shares of Preferred Stock (not to exceed the number of shares issuable upon exercise
of all the Class C-3 Warrants). The obligations of each holder of Class C-3 Warrants to purchase Class C-3 Warrant Shares pursuant to the previous sentence shall be allocated pro rata based on the number of Class C-3 Warrant Shares
underlying each holder’s respective Class C-3 Warrants immediately prior to such exercise. 
 4. Exercise of Warrant. 

(a) General. Subject to the provisions of this Agreement, upon surrender to the Company at its principal office of a Warrant
Certificate with the Form of Election to Purchase substantially in the form attached hereto as Annex II duly executed, together with payment in accordance with Section 4(b) of the applicable Exercise Price then in effect, the Company shall
issue and deliver promptly to the registered holder of such Warrant Certificate, a certificate or certificates for the Warrant Shares or other securities or property to which the registered holder is entitled, registered in the name of such
registered holder or, upon the written order of such registered holder, in such name or names as such registered holder may designate. Any certificate or certificates representing Warrant Shares shall be deemed to have been issued and any person so
designated to be named therein shall be deemed to have become the holder of record of the Warrant Shares as of the date of the surrender of such Warrant Certificate (together with such duly executed Form of Election to Purchase) and payment of the
Exercise Price. Notwithstanding anything to the contrary contained in this Section 4(a), in the event that the registered holder of a Warrant Certificate fails to surrender such holder’s Warrant Certificates and annexed Form of Election to
Purchase prior to the Expiration Date (if any) such holder shall be deemed to have surrendered such Warrant Certificates immediately prior to 5:00 P.M., New York time, on the Expiration Date (if any) together with an election to have the payment of
the corresponding Exercise Price made in accordance with Section 4(b), the Company shall issue and deliver promptly to such registered holder, a certificate or certificates for the Warrant Shares or other securities or property to which the
registered holder is entitled, registered in the name of such registered holder. 
 (b) Payment. Payment of the applicable Exercise
Price shall be made (i) with respect to the Class A Warrants and the Class C-4 Warrants, in cash and (ii) with respect to the Class C-3 Warrants, (A) by applying a corresponding principal amount, including any paid-in-kind
interest added to the outstanding principal amount of the Third Closing Subordinated Notes, and all accrued but unpaid interest on the Third Closing Subordinated Notes issued pursuant to the Additional Subordinated Note Agreement , to the extent
permitted by the terms of the Third Closing Subordinated Notes, held by any holder (regardless of whether such amount is then due or whether such Third Closing Subordinated Note is then redeemable) and (B) in cash, if and to the extent that the
amount of principal, including any paid-in-kind interest added to the outstanding principal amount of the Third Closing Subordinated Notes, and all accrued but unpaid interest on the Third Closing Subordinated Notes is insufficient to pay the full
amount of the Exercise Price. 
 (c) Exercise in Whole or in Part. The purchase rights evidenced by a Warrant Certificate shall be
exercisable, at the election of the registered holder thereof, in whole or in part. If less than all of the Warrant Shares purchasable under any Warrant Certificate are 

  
 5 

 
purchased, the Company shall cancel such Warrant Certificate upon the surrender thereof and shall execute and deliver a new Warrant Certificate of like tenor for the remaining number of Warrant
Shares purchasable thereunder. 
 (d) Fractional Shares. No fractional shares of Common Stock shall be issued upon exercise of any
Warrants. Instead the Company shall round the results of an exercise down to the nearest full share of Common Stock and pay the warrant holder an amount in cash equal to the amount of the fractional share not issued multiplied by the Exercise Price
per share. 
 (e) Reservation of Shares. The Company will at all times reserve and keep available out of its authorized Common Stock
solely for the purpose of issuance upon exercise of the Warrants as herein provided, such number of shares of Common Stock as shall from time to time be issuable upon the exercise of all outstanding Warrants. All shares of Common Stock that may be
issued upon exercise of the Warrants must and will be duly authorized and, upon issuance, be validly issued, fully paid and nonassessable and not subject to preemptive rights of any stockholder or other person and free from all taxes, liens, charges
and security interests with respect to the issuance thereof, other than those taxes, liens, charges and security interests as may be created by the holder of such Warrants or its affiliates. 

(f) DOT Notification. The Company will provide the DOT with notice whenever the Warrants are exercised by a person who is not a U.S.
Citizen. 
 5. Restrictions on Transfer. 

(a) Warrant Register. The Company shall maintain at its principal office a Warrant Register for registration of Warrant Certificates
and transfers thereof. The Company shall initially register the outstanding Warrants in the name of the Initial Holders. The Company may deem and treat the registered holder(s) of the Warrant Certificates as the absolute owner(s) thereof and of the
Warrants represented thereby (notwithstanding any notation of ownership or other writing on the Warrant Certificates made by any person) for the purpose of any exercise thereof or any distribution to the holder(s) thereof, and for all other
purposes, and the Company shall not be affected by any notice to the contrary. For the purpose of this Agreement, all references to a holder herein shall refer to a registered holder of Warrants. 

(b) Warrants and Warrant Shares Not Registered. Each registered holder of the Warrants, by acceptance thereof, represents and
acknowledges that the Warrants and the Warrant Shares (x) which may be purchased upon exercise of a Warrant are not registered under the Securities Act of 1933, as amended (the “Securities Act”) or under any state securities
laws, that the issuance of the Warrants and the offering and sale of such Warrant Shares are being made in reliance on the exemption from registration under Section 4(2) of the Securities Act and from similar exemptions under state securities
laws as not involving any public offering and that the Company’s reliance on such exemption is predicated in part on the representations made by the Initial Holders of the Warrants to and with the Company that such holder (1) is acquiring
the Warrants for investment for its own account, with no present intention of reselling or otherwise distributing the same, (2) is an “accredited investor” as defined in Regulation D under the Securities Act, and (3) has such
knowledge and experience in financial and business matters that it is capable of evaluating the merits and risks of the investments made or to be made in 

  
 6 

 
connection with the acquisition and exercise of the Warrants and (y) are subject to restrictions on transfer under the Third Amended and Restated Stockholders’ Agreement. Neither the
Warrants nor the related Warrant Shares may be transferred except (i) in compliance with the terms of the Third Amended and Restated Stockholders’ Agreement and (ii) (A) pursuant to an effective registration statement under the
Securities Act, (B) pursuant to Rule 144 under the Securities Act if the transfer is permitted by Rule 144 and the transferor delivers a certificate, in form and substance reasonably satisfactory to the Company, that such transfer complies
with the requirements of Rule 144, or (C) pursuant to any other available exemption from registration if such transferee makes the representations set forth in the preceding sentence in writing to the Company and, in the case of any transfer
pursuant to clause (B) or (C), accompanied by the delivery to the Company of an opinion of counsel reasonably satisfactory to the Company by counsel reasonably satisfactory to the Company, stating that no registration is required under the
Securities Act. 
 (c) Warrants and Warrant Shares Not Registered. Each registered holder of the Warrants, by acceptance thereof,
agrees that prior to any disposition by such holder of the Warrants or of any Warrant Shares, such holder will give written notice to the Company expressing such holder’s intention to effect such disposition and describing briefly such
holder’s intention as to the manner in which the Warrants or the Warrant Shares theretofore issued or thereafter issuable upon exercise hereof, are to be disposed of together with the opinion described in Section 5(b), if required,
whereupon, but only if such transfer is not restricted pursuant to the Third Amended and Restated Stockholders’ Agreement and is otherwise permitted pursuant to Section 5(b) above, such transferring holder shall be entitled to dispose of
the Warrants and/or the Warrant Shares theretofore issued upon the exercise thereof, all in accordance with the terms of the notice delivered by such holder to the Company. In the event of such transfer, the Company shall register the transfer of
any outstanding Warrants in the Warrant Register upon surrender of the Warrant Certificate(s) evidencing such Warrants to the Company at its principal office, accompanied by a written instrument of transfer in form reasonably satisfactory to it,
duly executed by the registered holder thereof. Upon any such registration or transfer, new Warrant Certificate(s) evidencing such transferred Warrants shall be issued to the transferee(s) and the surrendered Warrant Certificate(s) shall be
canceled. 
 6. Listing on Securities Exchanges. If the Common Stock is listed on a stock exchange or quoted on the Nasdaq Global
Market, the Company will use its reasonable efforts to procure at its sole expense the listing of all Warrant Shares (subject to issuance or notice of issuance) on all stock exchanges on which the Common Stock is then listed, or the quotation of the
Warrant Shares on the Nasdaq Global Market, as the case may be, and maintain the listing or quotation of such shares and other securities after issuance. 

7. Adjustment of the Number of Warrant Shares Issuable. Subject to the limitations set forth herein, the number of Warrant Shares
issuable upon the exercise of each Warrant is subject to adjustment from time to time upon the occurrence following the Third Closing Date of the events enumerated in this Section 7. For purposes of this Section 7, “Common Stock”
means shares now or hereafter authorized of any class of common stock of the Company, including but not limited to the Class A Common Stock and the Class C Common Stock, and any other stock of the Company, however designated, that has the right
(subject to any prior rights of any class or series of preferred stock) to participate in any distribution of the assets or earnings of the 

  
 7 

 
Company without limit as to per share amount, but excluding any shares of any class of common stock of the Company issued or issuable upon exercise or conversion of equity securities issued under
the Third Closing Subscription Agreement. 
 (a) Adjustment for Change in Capital Stock. If the Company: 

 

	 	(i)	pays a dividend or makes a distribution on its Common Stock, in either case in shares of its Common Stock; 

  

	 	(ii)	subdivides its outstanding shares of Common Stock into a greater number of shares; 

  

	 	(iii)	combines its outstanding shares of Common Stock into a smaller number of shares; 

  

	 	(iv)	makes a distribution on its Common Stock in shares of its capital stock other than Common Stock; or 

  

	 	(v)	issues by reclassification of its Common Stock any shares of its capital stock, 

 then the number of shares of
Common Stock issuable upon exercise of each Warrant immediately prior to such action shall be proportionately adjusted so that the holder of any Warrant thereafter exercised shall receive the aggregate number and kind of shares of capital stock of
the Company which he would have owned immediately following such action if such Warrant had been exercised immediately prior to such action. 

The adjustment shall become effective immediately after the record date in the case of a dividend or distribution and immediately after the
effective date in the case of a subdivision, combination or reclassification. 
 Such adjustment shall be made successively whenever any
event listed above shall occur. 
 (b) Adjustment for Rights Issue. 

If the Company distributes any rights, options or warrants to all holders of its Common Stock entitling them to purchase shares of Common
Stock at a price per share less than the current market price per share on the record date for determining holders entitled to the distribution of rights, options or warrants, the number of shares of Common Stock issuable upon exercise of each Class
C-3 Warrant shall be adjusted in accordance with the formula: 
  

									
		 	N1 =	  	N ×	  	 O + A
	 	
	 	  	  	O + (A × P/M)	 	

 where: 
  

					
	N1	  	=	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.

  
 8 

					
	N	  	=	  	the current number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.
			
	O	  	=	  	the number of shares of Common Stock outstanding on the record date.
			
	A	  	=	  	the number of additional shares of Common Stock offered.
			
	P	  	=	  	the purchase price per share of the additional shares.
			
	M	  	=	  	the current market price per share of Common Stock on the record date.

 The adjustment shall be made successively whenever any such rights, options or warrants are issued and shall
become effective immediately after the record date for the determination of stockholders entitled to receive the rights, options or warrants. If at the end of the period during which such rights, options or warrants are exercisable, not all rights,
options or warrants shall have been exercised, the number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant shall be immediately readjusted to what it would have been if “N” in the above formula had been the number
of shares actually issued at the end of the period. 
 (c) Adjustment for Other Distributions. If the Company distributes to all
holders of its Common Stock any of its assets (excluding cash distributions for which Section 7(p) hereof is applicable) or debt or other securities or any rights, options or warrants to purchase the assets or debt or other securities of the
Company, the number of shares of Common Stock issuable upon exercise of each Warrant shall be adjusted in accordance with the formula: 
  

									
		 	N’ =	  	N ×	  	 M
	 	
	 	  	  	M - F	 	

 where: 
  

			
	N’ =	  	the adjusted number of shares of Common Stock issuable upon exercise of each Warrant.
		
	N =	  	the current number of shares of Common Stock issuable upon exercise of each Warrant.
		
	M =	  	the current market price per share of Common Stock on the record date mentioned below.
		
	F =	  	the fair market value on the record date of the assets, securities, rights, options or warrants distributable to one share of Common Stock after taking into account, in the case of any rights, options or warrants, the consideration
required to be paid upon exercise thereof. The Board shall reasonably determine the fair market value in good faith and such determination shall be conclusive.

 The adjustment shall be made successively whenever any such distribution is made and shall become effective
immediately after the record date for the determination of stockholders entitled to receive the distribution. This Section 7(c) does not apply to rights, 

  
 9 

 
options or warrants referred to in Section 7(b). If any adjustment is made pursuant to this Section 7(c) as a result of the issuance of rights, options or warrants and at the end of the
period during which any such rights, options or warrants are exercisable, not all such rights, options or warrants shall have been exercised, the Warrant shall be immediately readjusted as if “F” in the above formula was the fair market
value described in the definition of “F” on the record date of the assets or securities actually distributed upon exercise of such rights, options or warrants divided by the number of shares of Common Stock outstanding on the record date.
Notwithstanding anything to the contrary contained in this Section 7(c), if “M-F” in the above formula is less than $1.00, the Company may elect to, and if “M-F” is a negative number, the Company shall, in lieu of the
adjustment otherwise required by this Section 7(c), distribute to the holders of the Warrants, upon exercise thereof, the assets, securities, rights, options or warrants (or the proceeds thereof) which would have been distributed to such
holders had such Warrants been exercised immediately prior to the record date for such distribution. 
 (d) Adjustment for Common Stock
Issue. If the Company issues shares of Common Stock for a consideration per share less than the current market price per share on the date the Company fixes the offering price of such additional shares, the number of shares of Common Stock
issuable upon exercise of each Class C-3 Warrant shall be adjusted in accordance with the formula: 
  

									
		 	N’ =	  	N ×	  	 A
	 	
	 	  	  	O + P/M	 	

 where: 
  

			
	N’ =	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.
		
	N =	  	the current number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.
		
	O =	  	the number of shares outstanding immediately prior to the issuance of such additional shares.
		
	P =	  	the aggregate consideration received for the issuance of such additional shares.
		
	M =	  	the current market price per share on the date of issuance of such additional shares.
		
	A =	  	the number of shares of Common Stock outstanding immediately after the issuance of such additional shares.

 The adjustment shall be made successively whenever any such issuance is made, and shall become effective
immediately after such issuance. 

  
 10 

 This Section 7(d) does not apply to: 

 

	 	(i)	any of the transactions described in Sections 7(b) and 7(c), 

  

	 	(ii)	the exercise of Warrants, or the conversion or exchange of other securities convertible or exchangeable for Common Stock, or the issuance of Common Stock upon the exercise of rights, options or warrants issued to the
holders of Common Stock, 

  

	 	(iii)	Common Stock (and options exercisable therefor) issued to the Company’s employees, officers, directors, consultants or advisors (whether or not still in such capacity on the date of exercise) under bona fide
employee benefit plans or stock option plans adopted by the Board and approved by the holders of Common Stock when required by law, if such Common Stock would otherwise be covered by this Section 7(d), and 

 

	 	(iv)	Common Stock issued in a bona fide public offering. 

 (e) Adjustment for Convertible
Securities Issue. If the Company issues any securities convertible into or exchangeable for Common Stock (other than securities issued in transactions described in Sections 7(b) and 7(c)) for a consideration per share of Common Stock initially
deliverable upon conversion or exchange of such securities less than the current market price per share on the date of issuance of such securities, the number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant shall be
adjusted in accordance with this formula: 
  

									
		 	N’ =	  	N ×	  	 O + D
	 	
	 	  	  	O + P/M	 	

 where: 
  

			
	N’ =	  	the adjusted number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.
		
	N =	  	the current number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant.
		
	O =	  	the number of shares of Common Stock outstanding immediately prior to the issuance of such securities.
		
	P =	  	the aggregate consideration received for the issuance of such securities.
		
	M =	  	the current market price per share on the date of issuance of such securities.
		
	D =	  	the maximum number of shares of Common Stock deliverable upon conversion or in exchange for such securities at the initial conversion or exchange rate.

  
 11 

 The adjustment shall be made successively whenever any such issuance is made, and shall become
effective immediately after such issuance. 
 If all of the Common Stock deliverable upon conversion or exchange of such securities have not
been issued when such securities are no longer outstanding, then the number of shares of Common Stock issuable upon exercise of each Class C-3 Warrant shall promptly be readjusted to what it would have been had the adjustment upon the issuance of
such securities been made on the basis of the actual number of shares of Common Stock issued upon conversion or exchange of such securities. 

This Section 7(e) does not apply to convertible securities issued in a bona fide public offering. 

(f) Current Market Price. In Sections 7(b), (c), (d) and (e) and Section 10, the current market price per share of
Common Stock on any date is the average of the Closing Prices (as defined below) of the Common Stock for 20 consecutive trading days commencing 30 trading days before the date in question. The term “Closing Price” shall mean, for each
trading day, (A) in the case of a security listed or admitted for trading on any United States national securities exchange or quotation system, the last reported sale price regular way, on such day, or if no sale takes place on such day, the
average of the closing bid and asked prices in the over-the-counter market as furnished by any New York Stock Exchange member firm selected from time to time by the Company for that purpose, (B) in the case of a security not then listed or
admitted for trading on any United States national securities exchange or quotation system and as to which no such reported sale price or bid or asked prices are available, the average or the reported high bid and low asked prices on such day, as
reported by a reputable quotation service, or a newspaper of general circulation in the Borough of Manhattan, City and State of New York, customarily published on each Business Day, designated by the Company, or if there shall be no bid and asked
prices on such day, the average of the high bid and low asked prices, as so reported, on the most recent day (not more than thirty (30) days prior to the date in question) for which prices have been so reported and (C) if there are not bid
and asked prices reported during the thirty (30) days prior to the date in question, the Closing Price will be the Fair Market Value. “Fair Market Value” means, as to any share of Common Stock, the cash price at which a willing
seller would sell and a willing buyer would buy such share of Common Stock in an arm’s length negotiated transaction without time constraints, as determined by a nationally recognized valuation firm selected by mutual agreement of the Initial
Holders and the Company, whose determination shall be final and binding on the parties hereto. The fees and expenses of such valuation firm shall be paid by the Company. 

(g) Consideration Received. For purposes of any computation respecting consideration received pursuant to Sections 7(b), (d) or
(e), the following shall apply: 
 (A) in the case of the issuance of shares of Common Stock for cash, the consideration
shall be the gross proceeds to the Company from such issuance, which shall not include any deductions for any commissions, discounts, other expenses incurred by the Company in connection therewith or amounts paid or payable for accrued interest or
accrued dividends; 

  
 12 

 (B) in the case of the issuance of shares of Common Stock for a consideration in
whole or in part other than cash or, subject to clause (C) below, securities, the consideration other than cash shall be deemed to be the fair market value thereof as determined in good faith by the Board (irrespective of the accounting
treatment thereof), whose determination shall be conclusive; 
 (C) in the case of the issuance of shares of Common Stock for
a consideration in whole or in part consisting of securities, the value of any securities shall be deemed to be: (x) if traded on a securities exchange or through the Nasdaq Global Market, the average of the closing prices of the securities on
such quotation system over the 30-day period ending three days preceding the day in question, (y) if actively traded over-the-counter, the average of the closing bid or sale prices (whichever is applicable) over the 30-day period ending three
days preceding the day in question and (z) if there is no active public market, the fair market value thereof, determined as provided in clause (B) above; and 

(D) in the case of the issuance of securities convertible into, exercisable for or exchangeable for shares of Common Stock, the
aggregate consideration received therefor shall be deemed to be the consideration received by the Company for the issuance of such securities plus the additional minimum consideration, if any, to be received by the Company upon the conversion,
exercise or exchange thereof for the maximum number of shares used to calculate the adjustment (the consideration in each case to be determined in the same manner as provided in clauses (A) through (C) of this Section 7(g). 

(h) When De Minimis Adjustment May Be Deferred. 

No adjustment in the number of shares of Common Stock issuable upon exercise of each Warrant need be made unless the adjustment would require
an increase or decrease of at least 1% in such number. Any adjustments that are not made shall be carried forward and taken into account in any subsequent adjustment. 

All calculations under this Section 7 shall be made to the nearest cent or to the nearest 1/100th of a share, as the case may be. 

(i) When No Adjustment Required. No adjustment need be made for a transaction referred to in Sections 7(b), (c), (d) or
(e) if the relevant Warrant holders are to participate, without requiring the Warrants to be exercised, in the transaction on a basis and with notice that the Board reasonably determines to be fair and appropriate in light of the basis and
notice on which holders of Common Stock participate in the transaction. A Warrant holder’s having the opportunity to participate in a transaction shall not of itself trigger the applicability of this subsection (i) in the absence of actual
participation (or election to participate) in such transaction by such Warrant holder. 
 To the extent the relevant Warrants become
convertible into cash, no adjustment need be made thereafter as to the amount of cash into which such Warrants are exercisable. Interest will not accrue on the cash. 

  
 13 

 (j) Notice of Adjustment. Upon any adjustment of the number of shares or Exercise Price
pursuant to Section 7, the Company shall within five days, mail to registered holders of the applicable Warrants, first class, postage prepaid, a notice of the adjustment together with a certificate from the Company’s independent public
accountants briefly stating the facts requiring the adjustment and the manner of computing it. 
 (k) Notice of Certain Transactions.
If: 
  

	 	(i)	the Company takes any action that would require an adjustment in the number of shares of Common Stock issuable upon exercise of a Warrant or Exercise Price pursuant to Sections 7(a), (b), (c), (d) or (e) and
if the Company does not arrange for the applicable Warrant holders to participate pursuant to Section 7(i); 

  

	 	(ii)	the Company takes any action that would require a supplemental Third Closing Warrant Agreement pursuant to Section 7(l); or 

  

	 	(iii)	there is a liquidation or dissolution of the Company, 

 the Company shall mail to registered holders of the
applicable Warrants, first class, postage prepaid, a notice stating the proposed record date for a dividend or distribution or the proposed effective date of a subdivision, combination, reclassification, consolidation, merger, transfer, lease,
liquidation or dissolution. The Company shall mail the notice at least 15 days before such date. Failure to mail the notice or any defect in it shall not affect the validity of the transaction. 

(l) Reorganization of Company. If the Company consolidates or merges with or into, or transfers or leases all or substantially all its
assets to, any person, upon consummation of such transaction the Warrants shall automatically become exercisable for the kind and amount of securities, cash or other assets which the holder of a Warrant would have owned immediately after the
consolidation, merger, transfer or lease if such holder had exercised the Warrant immediately before the effective date of the transaction; provided that if the holders of Common Stock were entitled to exercise a right of election as to the kind or
amount of securities, cash or other assets receivable upon such consolidation or merger, then the holders of the Warrants shall, following exercise of the Warrants in accordance with Section 4 hereof, be entitled to exercise such right of
election. Concurrently with the consummation of any such transaction, the corporation or other entity formed by or surviving any such consolidation or merger if other than the Company, or the person to which such sale or conveyance shall have been
made, shall enter into a supplemental Third Closing Warrant Agreement so providing and further providing for adjustments which shall be as nearly equivalent as may be practical to the adjustments provided for in this Section. The successor Company
shall mail to Warrant holders a notice describing the supplemental Third Closing Warrant Agreement. 
 If the issuer of securities
deliverable upon exercise of Warrants under the supplemental Third Closing Warrant Agreement is an affiliate of the formed, surviving, transferee or lessee corporation, that issuer shall join in the supplemental Third Closing Warrant Agreement. 

If this Section 7(l) applies, Sections 7(a), (b), (c), (d) and (e) do not apply. 

  
 14 

 (m) When Issuance or Payment May Be Deferred. In any case in which this Section 7
shall require that an adjustment in the number of shares of Common Stock issuable upon exercise of a Warrant be made effective as of a record date for a specified event, the Company may elect to defer until the occurrence of such event issuing to
the holder of any applicable Warrant exercised after such record date the Warrant Shares and other capital stock of the Company, if any, issuable upon such exercise over and above the Warrant Shares and other capital stock of the Company, if any,
issuable upon such exercise on the basis of the number of shares of Common Stock issuable upon exercise of the Warrant; provided, however, that the Company shall deliver to such holder a due bill or other appropriate instrument evidencing such
holder’s right to receive such additional Warrant Shares, other capital stock and cash upon the occurrence of the event requiring such adjustment. 

(n) Adjustment in Exercise Price. 

Upon each event that provides for an adjustment of the number of shares of Common Stock issuable upon exercise of a Warrant pursuant to this
Section 7, each applicable Warrant outstanding prior to the making of the adjustment shall thereafter have an adjusted applicable Exercise Price (calculated to the nearest ten millionth) obtained from the following formula: 

 

									
		 	E1 =	 	E x	 	N	  	
		 	 	 	  
	  	
		 		 		 	 N1 	  	

 where: 
  

					
	E1	  	=	  	the adjusted Exercise Price.
			
	E	  	=	  	the Exercise Price prior to adjustment.
			
	N1	  	=	  	the adjusted number of Warrant Shares issuable upon exercise of an applicable Warrant by payment of the adjusted Exercise Price.
			
	N	  	=	  	the number of Warrant Shares previously issuable upon exercise of an applicable Warrant by payment of the Exercise Price prior to adjustment.

 Following any adjustment to the applicable Exercise Price pursuant to this Section 7, the amount
payable, when adjusted and together with any consideration allocated to the issuance of the applicable Warrants, shall never be less than the par value per Warrant Share at the time of such adjustment. Such adjustment shall be made successively
whenever any event listed above shall occur. The Company hereby agrees with each holder of Warrants that it shall not increase the par value of the Common Stock above its current par value of $.01 per share. 

(o) Form of Warrants. Irrespective of any adjustment in the number or kind of shares issuable upon the exercise of the Warrants or the
payment of the applicable Exercise Price, Warrant Certificates theretofore or thereafter issued may continue to state the same number and kind of shares and the same applicable Exercise Price as are stated in the Warrant Certificates initially
issuable pursuant to this Agreement without affecting the number and kind of such shares issuable upon the exercise of the Warrants or payment of the applicable Exercise Price. 

  
 15 

 (p) Cash Distributions. If the Company distributes cash as a dividend or other
distribution to all holders of its Common Stock no adjustment shall be made to the number of shares of Common Stock issuable upon the exercise of each Warrant pursuant to this Section 7. 

8. Exchange and Replacement of Warrant Certificates. Each Warrant Certificate is exchangeable without expense, upon the surrender
thereof by the registered holder thereof at the principal executive office of the Company, for a new Warrant Certificate of like tenor and date representing in the aggregate the right to purchase the same number of Warrant Shares in such
denominations as shall be designated by the registered holder thereof at the time of such surrender. Upon receipt by the Company of evidence reasonably satisfactory to it of the loss, theft, destruction or mutilation of any Warrant Certificate, and,
in case of loss, theft or destruction, of indemnity reasonably satisfactory to it, and reimbursement to the Company of all reasonable expenses incidental thereto, and upon surrender and cancellation of such Warrant Certificate, if mutilated, the
Company will make and deliver a new Warrant Certificate of like tenor, in lieu thereof. 
 9. Payment of Taxes. The Company will pay
all documentary stamp taxes attributable to the initial issuance of the Warrants and of the Warrant Shares upon the exercise of Warrants; provided, however, that the Company shall not be required to pay any tax or taxes which may be payable in
respect of any transfer involved in the issuance of any Warrant Certificates or any certificates for Warrant Shares in a name other than that of the registered holder of such Warrant Certificate, and the Company shall not be required to issue or
deliver such Warrant Certificates unless or until the person or persons requesting the issuance thereof shall have paid to the Company the amount of such tax or shall have established to the reasonable satisfaction of the Company that such tax has
been paid. 
 10. Issuance of Additional Warrants. If the Company issues (i) shares of Common Stock for a consideration per
share less than the current Fair Market Value per share of the Company’s Common Stock on the date the Company fixes the offering price of such additional shares, (ii) any securities convertible into or exchangeable for Common Stock (other
than securities issued in transactions described in Sections 7(a) and 7(c)) for a consideration per share of Common Stock initially deliverable upon conversion or exchange of such securities less than the current Fair Market Value per share on the
date of issuance of such securities, or (iii) or otherwise distributes any rights, options or warrants to all holders of its Common Stock entitling them to purchase shares of Common Stock at a price per share less than the current Fair Market
Value per share on the record date for determining holders entitled to the distribution of rights, options or warrants, each Holder of Class A Warrants and/or Class C-4 Warrants shall be entitled to purchase from the Company, and the Company
shall sell to such Holder, additional warrants to purchase the number of shares (the “Additional Warrant Shares”) of Class A Common Stock (in the case of the Holder of the Class A Warrants) (the “Additional
Class A Warrants”) or Class C Common Stock (in the case of the Holder of the Class C-4 Warrants) (the “Additional Class C-4 Warrants”, and together with the Additional
Class A Warrants, the “Additional Warrants”), at the exercise price of $0.01 per share, that such Holder would have been entitled to purchase if such Holder had exercised its preemptive rights in full under Section 19 of
the Third Amended and Restated Stockholders’ Agreement with respect to the number of shares of Common Stock underlying the Class A Warrants and Class C-4 Warrants, respectively. The price paid by each Holder for the Additional Warrants
shall equal the product of (x) the offering 

  
 16 

 
price, exercise price or consideration per share of Common Stock, as applicable, issued or issuable (upon conversion or exercise, as applicable) by the Company and (y) the number of
Additional Warrant Shares underlying such Additional Class A Warrants or Additional Class C-4 Warrants, as applicable. 
 11.
Legends. (a) This Warrant and the Warrant Shares issuable upon exercise hereof are subject in all respects to the terms and conditions of the Third Amended and Restated Stockholders’ Agreement. No transfer, sale, assignment,
hypothecation or other disposition of this Warrant or the Warrant Shares issuable upon exercise hereof may be made except in accordance with the provisions of the Third Amended and Restated Stockholders’ Agreement. The holder of the Warrant, by
acceptance of this Warrant, agrees to be bound by the applicable provisions of the Third Amended and Restated Stockholders’ Agreement and all applicable benefits of the Third Amended and Restated Stockholders’ Agreement shall inure to such
holder. 
 (b) Except as otherwise provided in this Section 11, each Warrant Certificate and certificate for Warrant Shares initially
issued upon the exercise of this Warrant, and each Warrant Certificate and certificate for Warrants or Warrant Shares issued to any transferee of any such certificates, shall be stamped or otherwise imprinted with a legend in substantially the
following form: 
 “THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF MAY NOT BE
TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED STOCKHOLDERS’
AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA HOLDINGS LIMITED, VAI
PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 
 IN ADDITION, THE
SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR
TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 
 THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE
WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING PROVIDED FOR IN THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

  
 17 

 THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY
THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE WITH THE THIRD CLOSING WARRANT AGREEMENT REFERRED TO HEREIN.” 
 (c) Notwithstanding the
provisions of Section 11(b), (i) the Company shall deliver certificates for Warrants or Warrant Shares without the second paragraph of the legend set forth in such paragraph if the securities referred to in such paragraph shall have been
registered under the Securities Act or if such legend is otherwise not required under the Securities Act, and if such legend has been set forth on any previously delivered certificates, such legend shall be removed from any certificates at the
request of the holder if the securities referred to in such clause have been registered under the Securities Act, or upon delivery of a legal opinion by such holder from counsel reasonably satisfactory to the Company that such legend is not
otherwise required under the Securities Act, and (ii) the Company shall deliver certificates for Warrants or Warrant Shares without the first and third paragraphs of the legend set forth in such clause if such legend is no longer required
pursuant to the terms of the Third Amended and Restated Stockholders’ Agreement. 

  
 18 

 12. Notices. All notices, requests, consents and other communications hereunder shall be
in writing and shall be deemed to have been duly made when delivered by hand or sent by facsimile transmission (with receipt confirmed), or, if timely delivered to an air courier guaranteeing overnight delivery service, on the next business day, or
five business days after being deposited in the mail, first class, certified or registered, postage prepaid, return receipt requested, in each case addressed as follows (or to such other place or places as either of the parties shall designate by
written notice to the other): 
  

	 	(i)	if to registered holder, to the address set forth on the Warrant Register maintained by the Company; and 

  

	 	(ii)	if to the Company, to: 

 Virgin America Inc. 

555 Airport Blvd., 
 Suite 200

 Burlingame, CA 94010 

Attention: General Counsel 

Telecopier: (###) ###-#### 
 13.
Amendment. The Company with the consent of the registered holders of at least a majority of each class of the then-outstanding and unexercised Class A Warrants, the Class C-4 Warrants and the Class C-3 Warrants may amend or supplement
this Agreement or waive compliance by the Company in a particular instance with any provision of this Agreement; provided that without the consent of each registered holder affected, no such amendment shall (a) with respect to Warrants
held by a non-consenting registered holder, increase the applicable Exercise Price or decrease the number of Warrant Shares issuable upon exercise of any Warrant (other than pursuant to adjustments otherwise provided for in this Agreement, including
the adjustments provided for in Section 7 hereof), (b) alter the Company’s obligation to issue Warrant Shares upon exercise of the underlying Warrant (other than pursuant to adjustments otherwise provided for in this Agreement,
including the adjustments provided for in Section 7 hereof), (c) shorten the expiration date of the Warrants, (d) waive the application of the adjustment provisions contained in Section 7 in connection with any events to which
such provisions apply or otherwise modify the adjustment provisions contained in Section 7 in a manner that would have an adverse economic impact on the holders, or (e) otherwise be effective against such holder unless such amendment,
modification or waiver does not treat such holder differently in any respect from any other holder. The Company shall not amend, modify or change any provision of its articles or certificate of incorporation or bylaws to the extent that such
amendment, modification or change would result in the Company being unable to perform or comply with its obligations hereunder. 
 14.
Successors. Except as otherwise provided herein, all the covenants and provisions of this Agreement by or for the benefit of the Company and the registered holders of the Warrants shall inure to the benefit of their respective successors and
assigns hereunder. 

  
 19 

 15. Governing Law. This Agreement and each Warrant Certificate issued hereunder shall be
deemed to be a contract made under the laws of the State of New York and for all purposes shall be construed in accordance with the laws of such State. 

16. Benefits of This Agreement. Nothing in this Agreement shall be construed to give to any person other than the Company and the
registered holders of the unexercised Warrant Certificates any legal or equitable right, remedy or claim under this Agreement, and this Agreement shall be for the sole and exclusive benefit of the Company and such registered holders. Prior to the
exercise of the Warrants, no holder of a Warrant Certificate, as such, shall be entitled to any rights of a stockholder of the Company, including, without limitation, the right to receive dividends or subscription rights, the right to vote, to
consent, to exercise any preemptive right, to receive any notice of meetings of stockholders for the election of directors of the Company or any other matter or to receive any notice of any proceedings of the Company, except as may be specifically
provided for herein. The holders of the Warrants are not entitled to share in the assets of the Company in the event of the liquidation, dissolution or winding up of the Company’s affairs. 

17. Counterparts. This Agreement may be executed in any number of counterparts and each of such counterparts shall for all purposes be
deemed to be an original, and such counterparts shall together constitute one and the same instrument. 
 18. Headings. The headings
in this Agreement are intended solely for convenience of reference and shall be given no effect in the construction or interpretation of this Agreement. 

19. Remedies. The Company and the holder hereof each stipulates that the remedies at law of each party hereto in the event of any
default or threatened default by the other party in the performance or compliance with any of the terms of this Warrant are not and will not be adequate and that, to the fullest extent permitted by law, such terms may be specifically enforced by a
decree for the specific performance of any agreement contained herein or by an injunction against a violation of any of the terms hereof or otherwise. 

20. Severability. The provisions of this Agreement are severable, and if any clause or provision shall be held invalid, illegal or
unenforceable in whole or in part in any jurisdiction, then such invalidity or unenforceability shall affect in that jurisdiction only such clause or provision, or part thereof, and shall not in any manner affect such clause or provision in any
other jurisdiction or any other clause or provision of this Agreement in any jurisdiction. 
 21. Effective Date. This Agreement
shall become effective immediately upon the Third Closing (as defined in the Third Closing Subscription Agreement). 
 [Signature
Page Follows] 

  
 20 

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Third Closing
Warrant Agreement to be duly executed as of the day and year first above written. 
  

					
	VIRGIN AMERICA INC.
		
	By:	 	 /s/ Holly Nelson

		 	Name:	 	Holly Nelson
		 	Title:	 	SVP & Chief Financial Officer

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Third Closing
Warrant Agreement to be duly executed as of the day and year first above written. 
  

					
	CAROLA HOLDINGS LIMITED
		
	By:	 	 /s/ Henry Kierulf

		 	Name:	 	Henry Kierulf
		 	Title:	 	Alternate Director to Paul Fauvel
	
	Carola Holdings Limited
	 c/o La Motte Chambers
 St.
Helier
 Jersey, JE1 1BJ

	 Attn: Paul Fauvel/Ian Cuming
 Fax:
+##-####-######

 IN WITNESS WHEREOF, the parties hereto have caused this Amended and Restated Third Closing
Warrant Agreement to be duly executed as of the day and year first above written. 
  

					
	VAI MANAGEMENT, LLC
		
	By:	 	CYRUS AVIATION INVESTOR, LLC,
its Managing Member
		
	By:	 	CYRUS AVIATION INVESTOR, LLC,
		 	its Sole Member
		
	By:	 	CYRUS AVIATION INVESTOR, LLC,
		 	Its General Partner
		
	By:	 	 /s/ Stephen C. Freidheim

		 	Name:	 	Stephen C. Freidheim
		 	Title:	 	Managing Member

 Exhibit A 

THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED,
PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12,
2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES
NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 
 IN ADDITION, THE SECURITIES REPRESENTED BY THIS
CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN
EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 
 THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON
EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING PROVIDED FOR IN THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT SHALL BE
EFFECTIVE. 
 THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED
IN ACCORDANCE WITH THE THIRD CLOSING WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-5 

CLASS A WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, VAI Management, LLC, having an address at 399 Park Avenue, 39th Floor, New York, NY, 10022 (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on
July 31, 2037, up to 209,273 fully-paid and non-assessable shares (subject to adjustment in certain events as provided in Section 7 of the Third Closing Warrant Agreement) of Class A Common Stock, $.01 par value (“Class A
Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the “Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Third Closing Warrant Agreement (the
“Exercise Price”), upon surrender of this Warrant Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms
and conditions set forth herein and in the Amended and Restated Third Closing Warrant Agreement, dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Third Closing Warrant
Agreement”). Payment of the applicable Exercise Price shall be made in cash. 

 This Warrant may be exercised at such times and in such amounts as are provided for in the Third
Closing Warrant Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the Third Closing Warrant Agreement,
which Third Closing Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of the
Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Third Closing Warrant Agreement may be obtained by the holder(s) hereof upon written
request directed to the Company. 
 The Third Closing Warrant Agreement provides that upon the occurrence of certain events, the type and/or
number of the Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Third
Closing Warrant Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Third Closing Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Third Closing Warrant Agreement shall have the meanings assigned to them in the Third Closing Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	  

		
	Name:	 	  

		
	Title:	 	  

 [Signature page to VAI Management, LLC Class A Warrant] 

 ANNEX I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                                         hereby
sells, assigns and transfers unto
                                        , whose
address is
                                        , this
Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute and appoint
                                         attorney
to transfer the within Warrant Certificate on the books of the within-named Company, with full power of substitution. 
  

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	  

		 		 		 	(Insert Social Security or Other Identifying Number of Holder)

 ANNEX II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                 shares of Common Stock and herewith makes payment of the Exercise Price by applying $        , in cash, in
accordance with the terms of the Third Closing Warrant Agreement. 
 The undersigned requests that a certificate for such shares of Common
Stock be registered in the name of
                                        , whose
address is
                                         and that
such certificate be delivered to
                                         whose
address is
                                        . 

 

									
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must
be guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	(Insert Social Security or Other Identifying Number of Holder)	 	  
	 		 	

 THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE
HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED, PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED
STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12, 2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA
HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 

IN ADDITION, THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER
UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 

THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING
PROVIDED FOR IN THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT SHALL BE EFFECTIVE. 

THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED IN ACCORDANCE
WITH THE THIRD CLOSING WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-6 

CLASS A WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on July 31, 2037, up to 23,252 fully-paid and non-assessable
shares (subject to adjustment in certain events as provided in Section 7 of the Third Closing Warrant Agreement) of Class A Common Stock, $.01 par value (“Class A Common Stock”), of VIRGIN AMERICA INC., a Delaware
corporation (the “Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Third Closing Warrant Agreement (the “Exercise Price”), upon surrender of this
Warrant Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms and conditions set forth herein and in the Amended and
Restated Third Closing Warrant Agreement, dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Third Closing Warrant Agreement”). Payment of the applicable Exercise Price shall
be made in cash. 

 This Warrant may be exercised at such times and in such amounts as are provided for in the Third
Closing Warrant Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the Third Closing Warrant Agreement,
which Third Closing Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of the
Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Third Closing Warrant Agreement may be obtained by the holder(s) hereof upon written
request directed to the Company. 
 The Third Closing Warrant Agreement provides that upon the occurrence of certain events, the type and/or
number of the Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Third
Closing Warrant Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Third Closing Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Third Closing Warrant Agreement shall have the meanings assigned to them in the Third Closing Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	  

		
	Name:	 	  

		
	Title:	 	  

 [Signature page to Carola Holdings Limited Class A Warrant] 

 ANNEX I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                                         hereby
sells, assigns and transfers unto
                                        , whose
address is
                                        , this
Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute and appoint
                                         attorney
to transfer the within Warrant Certificate on the books of the within-named Company, with full power of substitution. 
  

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	  

		 		 		 	(Insert Social Security or Other Identifying Number of Holder)

 ANNEX II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                 shares of Common Stock and herewith makes payment of the Exercise Price by applying $        , in cash, in
accordance with the terms of the Third Closing Warrant Agreement. 
 The undersigned requests that a certificate for such shares of Common
Stock be registered in the name of
                                        , whose
address is
                                         and that
such certificate be delivered to
                                         whose
address is
                                        . 

 

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	(Insert Social Security or Other Identifying Number of Holder)	 		 		 	  

 Exhibit B 

THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED,
PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12,
2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES
NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 
 IN ADDITION, THE SECURITIES REPRESENTED BY THIS
CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN
EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 
 THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON
EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING PROVIDED FOR IN THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT SHALL BE
EFFECTIVE. 
 THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED
IN ACCORDANCE WITH THE THIRD CLOSING WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-7 

CLASS C-3 WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5:00 P.M. New York time on the Expiration Date (as defined in the Amended and Restated
Third Closing Warrant Agreement, dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Third Closing Warrant Agreement”)), up to 3,102,888 fully-paid and non-assessable shares
(subject to adjustment in certain events as provided in Section 7 of the Third Closing Warrant Agreement) of Class C Common Stock, $.01 par value (“Class C Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation (the
“Company”), at the exercise price of (1) if paid in cash, $13.50 per share, subject to adjustment as provided in Section 7 or the Third Closing Warrant Agreement or (2) if paid through amounts received by

 
the warrantholder upon the contemporaneous redemption of Third Closing Subordinated Notes (as defined in the Third Closing Subscription Agreement), the sum of (x) $13.50 per share and
(y) the aggregate amount of all paid-in-kind interest, including any paid-in-kind interest added to the outstanding principal amount of the Third Closing Subordinated Notes, paid on the Third Closing Subordinated Notes and all previously
accrued but unpaid interest on the Third Closing Subordinated Notes paid out in connection with such redemption divided by the aggregate number of Class C-3 Warrant Shares being purchased on any particular exercise of Class C-3
Warrants (the price in (1) or (2), as applicable, the “Exercise Price”), upon surrender of this Warrant Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at
the principal office of the Company, but subject to the terms and conditions set forth herein and in the Third Closing Warrant Agreement. Payment of the applicable Exercise Price shall be made (A) by applying a corresponding principal amount
and accrued but unpaid interest of the Third Closing Subordinated Notes (as defined in the Subscription Agreement) issued pursuant to the Additional Subordinated Note Agreement, dated as of July 31, 2007, between the Company and Virgin (as
amended, the “Additional Subordinated Note Agreement”), to the extent permitted by the terms of the Third Closing Subordinated Notes, held by any holder (regardless of whether such amount is then due or whether such Subordinated
Notes are then redeemable) and (B) in cash, if and to the extent that the amount of principal and accrued but unpaid interest on the Third Closing Subordinated Notes is insufficient to pay the full amount of the Exercise Price. 

This Warrant may (or shall, if applicable) be exercised at such times and in such amounts as are provided for in the Third Closing Warrant
Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the Third Closing Warrant Agreement, which Third
Closing Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of the Company and the
holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Third Closing Warrant Agreement may be obtained by the holder(s) hereof upon written request directed to
the Company. 
 The Third Closing Warrant Agreement provides that upon the occurrence of certain events, the type and/or number of the
Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Third
Closing Warrant Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Third Closing Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 

 The Company may deem and treat the registered holder(s) hereof as the absolute owner(s) of this
Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes, and the Company shall not be
affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined herein and are defined in the
Third Closing Warrant Agreement shall have the meanings assigned to them in the Third Closing Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	  

		
	Name:	 	  

		
	Title:	 	  

 [Signature page to Carola Holdings Limited Class C-3 Warrant] 

 ANNEX I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                                         hereby
sells, assigns and transfers unto
                                        , whose
address is
                                        , this
Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute and appoint
                                         attorney
to transfer the within Warrant Certificate on the books of the within-named Company, with full power of substitution. 
  

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	  

		 		 		 	(Insert Social Security or Other Identifying Number of Holder)

 ANNEX II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                 shares of Common Stock and herewith makes payment of the Exercise Price by applying [the corresponding principal amount, including any paid-in-kind
interest added to the outstanding principal amount of the Third Closing Subordinated Notes, and accrued but unpaid interest of $          of the Third Closing Subordinated Notes issued pursuant to the
Additional Subordinated Note Agreement] [and/or] [$        , in cash], accordance with the terms of the Third Closing Warrant Agreement. 

The undersigned requests that a certificate for such shares of Common Stock be registered in the name of
                                        , whose
address is
                                         and that
such certificate be delivered to
                                         whose
address is
                                        . 

 

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
	(Insert Social Security or Other Identifying Number of Holder)	 		 		 	  

 Exhibit C 

THE SECURITIES REPRESENTED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF MAY NOT BE TRANSFERRED, SOLD, ASSIGNED,
PLEDGED, HYPOTHECATED OR OTHERWISE DISPOSED OF UNLESS SUCH TRANSFER, SALE, ASSIGNMENT, PLEDGE, HYPOTHECATION OR OTHER DISPOSITION COMPLIES WITH THE PROVISIONS OF THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT, DATED AS OF JANUARY 12,
2010, AS MAY BE AMENDED, RESTATED OR SUPERSEDED FROM TIME TO TIME (THE “STOCKHOLDERS’ AGREEMENT”), AMONG VIRGIN AMERICA INC. (THE “COMPANY”), CAROLA HOLDINGS LIMITED, VAI PARTNERS LLC AND THE OTHER PARTIES
NAMED THEREIN, A COPY OF WHICH IS ON FILE AT THE REGISTERED OFFICE OF THE COMPANY. 
 IN ADDITION, THE SECURITIES REPRESENTED BY THIS
CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF HAVE NOT BEEN REGISTERED UNDER UNITED STATES SECURITIES LAWS AND MAY NOT BE TRANSFERRED TO ANY PERSON UNLESS SUCH SECURITIES ARE REGISTERED OR TRANSFERRED IN ACCORDANCE WITH AN
EXEMPTION FROM REGISTRATION IN THE UNITED STATES. 
 THE SECURITIES EVIDENCED BY THIS CERTIFICATE AND THE WARRANT SHARES ISSUABLE UPON
EXERCISE HEREOF ARE SUBJECT TO RESTRICTIONS ON VOTING PROVIDED FOR IN THE THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT AND NO VOTE OF SUCH SECURITIES THAT CONTRAVENES SUCH THIRD AMENDED AND RESTATED STOCKHOLDERS’ AGREEMENT SHALL BE
EFFECTIVE. 
 THE TRANSFER OF THE WARRANTS AND THE WARRANT SHARES ISSUABLE UPON EXERCISE HEREOF REPRESENTED BY THIS CERTIFICATE IS RESTRICTED
IN ACCORDANCE WITH THE THIRD CLOSING WARRANT AGREEMENT REFERRED TO HEREIN. 
 No. W-8 

CLASS C-4 WARRANT CERTIFICATE 

This Warrant Certificate certifies that, for value received, Carola Holdings Limited, having an address at St. Helier, Jersey, JE1 1BJ,
Channel Islands (“Holder”), is the registered holder of warrants (the “Warrants”) to purchase, after the date hereof until 5.00 P.M, New York time on July 31, 2037, up to 480,738 fully-paid and
non-assessable shares (subject to adjustment in certain events as provided in Section 7 of the Warrant Agreement) of Class C Common Stock, $0.01 par value (“Class C Common Stock”), of VIRGIN AMERICA INC., a Delaware corporation
(the “Company”), at the exercise price of $0.01 per share, subject to adjustment as provided in Section 7 of the Third Closing Warrant Agreement (the “Exercise Price”), upon surrender of this Warrant
Certificate, together with the attached Form of Election to Purchase duly executed, and payment of the Exercise Price at the principal office of the Company, but subject to the terms and conditions set forth herein and in the Amended and Restated
Third Closing Warrant Agreement dated as of January 12, 2010, among the Company, Carola Holdings Limited and VAI Management, LLC (the “Third Closing Warrant Agreement”). Payment of the applicable Exercise Price shall be made in
cash. 

 This Warrant may be exercised at such times and in such amounts as are provided for in the Third
Closing Warrant Agreement. 
 The Warrants evidenced by this Warrant Certificate are issued pursuant to the Third Closing Warrant Agreement,
which Third Closing Warrant Agreement is hereby incorporated by reference in and made a part of this instrument and is hereby referred to for a description of the rights, limitation of rights, obligations, duties and immunities thereunder of
the Company and the holders (the words “holders” or “holder” meaning the registered holders or registered holder) of the Warrants. A copy of the Third Closing Warrant Agreement may be obtained by the holder(s) hereof upon written
request directed to the Company. 
 The Third Closing Warrant Agreement provides that upon the occurrence of certain events, the type and/or
number of the Company’s securities issuable upon exercise of the Warrants, and the Exercise Price, may, subject to certain conditions, be adjusted. 

Upon due presentment for registration of transfer of this Warrant Certificate at the principal office of the Company, a new Warrant
Certificate or Warrant Certificates of like tenor and evidencing in the aggregate a like number of Warrants shall be issued to the transferee(s) in exchange for this Warrant Certificate, subject to the limitations provided herein and in the Third
Closing Warrant Agreement, without any charge except for any tax or other governmental charge imposed in connection therewith which is not payable by the Company pursuant to Section 9 of the Third Closing Warrant Agreement. 

Upon the exercise of less than all of the Warrants evidenced by this Certificate, the Company shall forthwith issue to the holder hereof a new
Warrant Certificate representing such numbered of unexercised Warrants. 
 The Company may deem and treat the registered holder(s) hereof as
the absolute owner(s) of this Warrant Certificate (notwithstanding any notation of ownership or other writing hereon made by anyone), for the purpose of any exercise hereof and of any distribution to the holder(s) hereof and for all other purposes,
and the Company shall not be affected by any notice to the contrary. 
 All terms used in this Warrant Certificate which are not defined
herein and are defined in the Third Closing Warrant Agreement shall have the meanings assigned to them in the Third Closing Warrant Agreement. 

 IN WITNESS WHEREOF, the Company has caused this Warrant Certificate to be duly executed under its
corporate seal. 
 Dated: January 12, 2010 
  

			
	VIRGIN AMERICA INC.
		
	By:	 	  

		
	Name:	 	  

		
	Title:	 	  

 [Signature page to Carola Holdings Limited Class C-4 Warrant] 

 ANNEX I 

[FORM OF ASSIGNMENT] 
 (To be
executed by the registered holder if such holder 
 desires to transfer the Warrant Certificate.) 

FOR VALUE RECEIVED,
                                         hereby
sells, assigns and transfers unto
                                        , whose
address is
                                        , this
Warrant Certificate, together with all right, title and interest therein, and does hereby irrevocably constitute and appoint
                                         attorney
to transfer the within Warrant Certificate on the books of the within-named Company, with full power of substitution. 
  

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	  

		 		 		 	(Insert Social Security or Other Identifying Number of Holder)

 ANNEX II 

[FORM OF ELECTION TO PURCHASE] 

The undersigned hereby irrevocably elects to exercise the right, represented by this Warrant Certificate, to purchase
                 shares of Common Stock and herewith makes payment of the Exercise Price by applying $        , in cash, in
accordance with the terms of the Third Closing Warrant Agreement. 
 The undersigned requests that a certificate for such shares of Common
Stock be registered in the name of
                                        , whose
address is
                                         and that
such certificate be delivered to
                                         whose
address is
                                        . 

 

							
	Dated:	 		 	Signature:	 	  

				
		 		 		 	(Signature must conform in all respects to name of holder as specified on the face of the Warrant Certificate. If the Common Stock of the Company is listed on or quoted on an exchange or quotation system, signature must be
guaranteed by a bank or trust company having an office or correspondent in the United States or a broker or dealer which is a member of a registered securities exchange or the National Association of Securities Dealers, Inc.)
				
		 		 		 	  

		 		 		 	(Insert Social Security or Other Identifying Number of Holder

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