Document:

EX-10.3

Exhibit 10.3

FIRST AMENDMENT

TO

AMENDED AND RESTATED EMPLOYMENT AGREEMENT

     THIS FIRST AMENDMENT TO AMENDED AND RESTATED EMPLOYMENT AGREEMENT (this “Amendment”) is
entered into effective as of December 15, 2008 (the “Effective Date”) by and among BioMed Realty
Trust, Inc., a Maryland corporation (the “REIT”), BioMed Realty, L.P., a Maryland limited
partnership (the “Operating Partnership” and, together with the REIT, the “Company”), and Gary A.
Kreitzer (the “Executive”).

     WHEREAS, the Company and the Executive desire to amend that certain Amended and Restated
Employment Agreement dated as of December 14, 2007 between the Company and the Executive (the
“Original Agreement”), as set forth herein. Capitalized terms used and not otherwise defined
herein shall have the respective meanings set forth in the Original Agreement.

     NOW, THEREFORE, in consideration of the various covenants and agreements hereinafter set
forth, the parties hereto agree as follows:

     1. The first sentence of Section 2(a)(i) of the Original Agreement is hereby amended to read
as follows:

     “During the Employment Period, the Executive shall serve as Executive Vice President, General
Counsel and Assistant Secretary of the REIT and the Operating Partnership and shall perform such
employment duties as are assigned by the REIT’s Chief Executive Officer.”

     2. Section 2(b)(i) of the Original Agreement is hereby amended in its entirety to read as
follows:

     “Base Salary. Effective January 1, 2009, during the Employment Period, the Executive
shall receive a base salary (the “Base Salary”) of $100,000 per annum. The Base Salary shall be
paid by the Partnership at such intervals as the Partnership pays executive salaries generally.
The Executive shall provide services to the REIT as described in this Agreement for no additional
salary. The Base Salary may be reviewed annually by the REIT’s Board of Directors, or the
Compensation Committee thereof, and may be increased in the discretion of the REIT’s Board of
Directors, or the Compensation Committee thereof. Any increase in Base Salary shall not serve to
limit or reduce any other obligation to the Executive under this Agreement. The Base Salary shall
not be reduced after any such increase and the term “Base Salary” as utilized in this Agreement
shall refer to Base Salary as so increased from time to time.”

     3. A new Section 2(b)(ix) is hereby added to the Original Agreement as follows:

     “(ix) Any amounts payable to the Executive under Sections 2(b)(v) and (vi) shall be made in
accordance with Treasury Regulation Section 1.409A-3(i)(1)(iv) and shall be paid on or before the
last day of Executive’s taxable year following the taxable year in which Executive incurred the
expenses. The amounts provided under Sections 2(b)(v) and (vi) during any taxable year of the
Executive’s will not affect such amounts provided in any other taxable year of

 

 

Executive’s, and Executive’s right to reimbursement for such amounts shall not be subject to
liquidation or exchange for any other benefit.”

     4. Section 8(d) is hereby deleted and replaced with the words “Intentionally Omitted.”

     5. Section 8(h) of the Original Agreement is hereby amended in its entirety to read as
follows:

     “(h) Notwithstanding anything to the contrary set forth in this Section 8, the Excise Tax
Gross-Up Payment shall be paid in accordance with Treasury Regulation Section 1.409A-3(i)(1)(v).
Notwithstanding anything to the contrary in this Section 8, in no event shall any Excise Tax
Gross-Up Payment exceed the amount of the “tax gross-up payment” on any Payment permitted under
Treasury Regulation Section 1.409A-3(i)(1)(v), and interest and penalties with respect to the
Excise Tax Gross-Up Payment or that are incurred by the Company on the Executive’s behalf under
this Section 8 shall be paid to the Executive or on the Executive’s behalf only to the extent
permitted under Treasury Regulation Section 1.409A-3(i)(1)(v).

     Notwithstanding the foregoing, any Excise Tax Gross-Up Payment with respect to any Payment
shall be paid no later than the end of the Executive’s taxable year next following the taxable year
in which the Executive remits the related taxes, in accordance with Treasury Regulation Section
1.409A-3(i)(1)(v). Any costs and expenses (including any Excise Tax, income tax or interest and
penalties) incurred by the Company on the Executive’s behalf or required to be paid to the
Executive by the Company under this Section 8 due to any tax contest, audit or litigation shall be
paid by the Company by the end of the Executive’s taxable year following the Executive’s taxable
year in which the taxes that are the subject of the tax contest, audit or litigation are remitted
to the taxing authority, or where, as a result of such tax contest, audit or litigation, no taxes
are remitted, the end of the Executive’s taxable year following the Executive’s taxable year in
which the audit is completed or there is a final and nonappealable settlement or other resolution
of the contest or litigation, in accordance with Treasury Regulation Section 1.409A-3(i)(1)(v).”

     6. The following language is hereby added to the end of the second to last sentence of Section
13(b) of the Original Agreement:

     “; provided, further, that the prevailing party shall be reimbursed for such
fees, costs and expenses within sixty (60) days following any such award, but, to the extent the
Executive is the prevailing party, in no event later than the last day of the Executive’s taxable
year following the taxable year in which the fees, costs and expenses were incurred;
provided, further, that the parties’ obligations pursuant to the provisos set forth
above shall terminate on the tenth (10th) anniversary of the date of Executive’s termination of
employment.”

     7. A new Section 13(k)(iv) is hereby added to the Original Agreement as follows:

     “(iv) As provided in Internal Revenue Notice 2007-86, notwithstanding any other provision of
this Agreement, with respect to an election or amendment to change a time or form of

2

 

payment under this Agreement made on or after January 1, 2008 and on or before December 31, 2008,
the election or amendment shall apply only with respect to payments that would not otherwise be
payable in 2008, and shall not cause payments to be made in 2008 that would not otherwise be
payable in 2008.”

     8. The Original Agreement, as amended by this Amendment, shall remain in full force and effect
in accordance with the terms and conditions thereof. The formation, construction, and performance
of this Amendment shall be construed in accordance with the laws of California, without regard to
conflict of laws principles. This Amendment may be executed simultaneously in any number of
counterparts, each of which shall be deemed an original but all of which together shall constitute
one and the same instrument.

IN WITNESS WHEREOF, the parties have executed this Amendment as of the Effective Date.

	 	 	 	 	 	 	 	 	 
	 	 	BIOMED REALTY TRUST, INC.
	 
	 	 	 	 	 	 	 	 
	 	 	By:	 	/s/ ALAN D. GOLD	 	 
	 	 	 	 	 	 	 
	 	 	 	 	Name: Alan D. Gold	 	 
	 	 	 	 	Title: Chief Executive Officer	 	 
	 
	 	 	 	 	 	 	 	 
	 	 	BIOMED REALTY, L.P.
	 
	 	 	 	 	 	 	 	 
	 	 	By:	 	BioMed Realty Trust, Inc., its general partner	 	 
	 
	 	 	 	 	 	 	 	 
	 

	 	 	 	By:
	 	/s/ ALAN D. GOLD	 	 
	 

	 	 	 	 	 	 	 	 
	 

	 	 	 	Name:
	 	Alan D. Gold	 	 
	 

	 	 	 	Title:
	 	Chief Executive Officer	 	 
	 
	 	 	 	 	 	 	 	 
	 	 	EXECUTIVE
	 
	 	 	 	 	 	 	 	 
	 	 	     /s/ GARY A. KREITZER
	 	 	 	 	 
	 	 	     Gary A. Kreitzer

3EX-10.4

Exhibit 10.4

FIRST AMENDMENT

TO

AMENDED AND RESTATED EMPLOYMENT AGREEMENT

     THIS FIRST AMENDMENT TO AMENDED AND RESTATED EMPLOYMENT AGREEMENT (this “Amendment”) is
entered into effective as of December 15, 2008 (the “Effective Date”) by and among BioMed Realty
Trust, Inc., a Maryland corporation (the “REIT”), BioMed Realty, L.P., a Maryland limited
partnership (the “Operating Partnership” and, together with the REIT, the “Company”), and Matthew
G. McDevitt (the “Executive”).

     WHEREAS, the Company and the Executive desire to amend that certain Amended and Restated
Employment Agreement dated as of December 14, 2007 between the Company and the Executive (the
“Original Agreement”), as set forth herein. Capitalized terms used and not otherwise defined
herein shall have the respective meanings set forth in the Original Agreement.

     NOW, THEREFORE, in consideration of the various covenants and agreements hereinafter set
forth, the parties hereto agree as follows:

     1. A new Section 2(b)(ix) is hereby added to the Original Agreement as follows:

     “(ix) Any amounts payable to the Executive under Sections 2(b)(v) and (vi) shall be made in
accordance with Treasury Regulation Section 1.409A-3(i)(1)(iv) and shall be paid on or before the
last day of Executive’s taxable year following the taxable year in which Executive incurred the
expenses. The amounts provided under Sections 2(b)(v) and (vi) during any taxable year of the
Executive’s will not affect such amounts provided in any other taxable year of Executive’s, and
Executive’s right to reimbursement for such amounts shall not be subject to liquidation or exchange
for any other benefit.”

     2. Section 8(d) is hereby deleted and replaced with the words “Intentionally Omitted.”

     3. Section 8(h) of the Original Agreement is hereby amended in its entirety to read as
follows:

     “(h) Notwithstanding anything to the contrary set forth in this Section 8, the Excise Tax
Gross-Up Payment shall be paid in accordance with Treasury Regulation Section 1.409A-3(i)(1)(v).
Notwithstanding anything to the contrary in this Section 8, in no event shall any Excise Tax
Gross-Up Payment exceed the amount of the “tax gross-up payment” on any Payment permitted under
Treasury Regulation Section 1.409A-3(i)(1)(v), and interest and penalties with respect to the
Excise Tax Gross-Up Payment or that are incurred by the Company on the Executive’s behalf under
this Section 8 shall be paid to the Executive or on the Executive’s behalf only to the extent
permitted under Treasury Regulation Section 1.409A-3(i)(1)(v).

     Notwithstanding the foregoing, any Excise Tax Gross-Up Payment with respect to any Payment
shall be paid no later than the end of the Executive’s taxable year next following the taxable year
in which the Executive remits the related taxes, in accordance with Treasury

 

 

Regulation Section 1.409A-3(i)(1)(v). Any costs and expenses (including any Excise Tax,
income tax or interest and penalties) incurred by the Company on the Executive’s behalf or required
to be paid to the Executive by the Company under this Section 8 due to any tax contest, audit or
litigation shall be paid by the Company by the end of the Executive’s taxable year following the
Executive’s taxable year in which the taxes that are the subject of the tax contest, audit or
litigation are remitted to the taxing authority, or where, as a result of such tax contest, audit
or litigation, no taxes are remitted, the end of the Executive’s taxable year following the
Executive’s taxable year in which the audit is completed or there is a final and nonappealable
settlement or other resolution of the contest or litigation, in accordance with Treasury Regulation
Section 1.409A-3(i)(1)(v).”

     4. The following language is hereby added to the end of the second to last sentence of Section
13(b) of the Original Agreement:

     “; provided, further, that the prevailing party shall be reimbursed for such
fees, costs and expenses within sixty (60) days following any such award, but, to the extent the
Executive is the prevailing party, in no event later than the last day of the Executive’s taxable
year following the taxable year in which the fees, costs and expenses were incurred;
provided, further, that the parties’ obligations pursuant to the provisos set forth
above shall terminate on the tenth (10th) anniversary of the date of Executive’s termination of
employment.”

     5. A new Section 13(k)(iv) is hereby added to the Original Agreement as follows:

     “(iv) As provided in Internal Revenue Notice 2007-86, notwithstanding any other provision of
this Agreement, with respect to an election or amendment to change a time or form of payment under
this Agreement made on or after January 1, 2008 and on or before December 31, 2008, the election or
amendment shall apply only with respect to payments that would not otherwise be payable in 2008,
and shall not cause payments to be made in 2008 that would not otherwise be payable in 2008.”

     6. The Original Agreement, as amended by this Amendment, shall remain in full force and effect
in accordance with the terms and conditions thereof. The formation, construction, and performance
of this Amendment shall be construed in accordance with the laws of California, without regard to
conflict of laws principles. This Amendment may be executed simultaneously in any number of
counterparts, each of which shall be deemed an original but all of which together shall constitute
one and the same instrument.

2

 

IN WITNESS WHEREOF, the parties have executed this Amendment as of the Effective Date.

	 	 	 	 	 	 	 	 	 
	 	 	BIOMED REALTY TRUST, INC.
	 
	 	 	 	 	 	 	 	 
	 	 	By:	 	/s/ ALAN D. GOLD	 	 
	 	 	 	 	 	 	 
	 	 	 	 	Name: Alan D. Gold	 	 
	 	 	 	 	Title: Chief Executive Officer	 	 
	 
	 	 	 	 	 	 	 	 
	 	 	BIOMED REALTY, L.P.
	 
	 	 	 	 	 	 	 	 
	 	 	By:	 	BioMed Realty Trust, Inc., its general partner	 	 
	 
	 	 	 	 	 	 	 	 
	 

	 	 	 	By:
	 	/s/ ALAN D. GOLD	 	 
	 

	 	 	 	 	 	 	 	 
	 

	 	 	 	Name:
	 	Alan D. Gold	 	 
	 

	 	 	 	Title:
	 	Chief Executive Officer	 	 
	 
	 	 	 	 	 	 	 	 
	 	 	EXECUTIVE
	 
	 	 	 	 	 	 	 	 
	 	 	     /s/ MATTHEW G. MCDEVITT
	 	 	 	 	 
	 	 	     Matthew G. McDevitt

3

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