Document:

EX-4.3

 Exhibit 4.3 
 FORM OF NOTE DUE              
 [UNLESS THIS NOTE IS PRESENTED BY AN AUTHORIZED REPRESENTATIVE OF THE DEPOSITORY TRUST COMPANY, A NEW YORK CORPORATION (“DTC”), TO THE ISSUER OR ITS AGENT FOR REGISTRATION OF TRANSFER,
EXCHANGE OR PAYMENT, AND ANY NOTE ISSUED IS REGISTERED IN THE NAME OF CEDE & CO. OR IN SUCH OTHER NAME AS IS REQUESTED BY AN AUTHORIZED REPRESENTATIVE OF DTC (AND ANY PAYMENT IS MADE TO CEDE & CO. OR TO SUCH OTHER ENTITY AS IS
REQUESTED BY AN AUTHORIZED REPRESENTATIVE OF DTC), ANY TRANSFER, PLEDGE OR OTHER USE HEREOF FOR VALUE OR OTHERWISE BY OR TO ANY PERSON IS WRONGFUL INASMUCH AS THE REGISTERED OWNER HEREOF, CEDE & CO., HAS A BENEFICIAL INTEREST HEREIN.

 TRANSFERS OF THIS NOTE ARE LIMITED TO TRANSFERS IN WHOLE, BUT NOT IN PART, TO NOMINEES OF DTC OR TO A
SUCCESSOR THEREOF OR SUCH SUCCESSOR’S NOMINEE AND TRANSFERS OF PORTIONS OF THIS GLOBAL NOTE ARE LIMITED TO TRANSFERS MADE IN ACCORDANCE WITH THE TRANSFER PROVISIONS OF THE INDENTURE.]1 
 [IN CONNECTION WITH ANY TRANSFER, THE HOLDER WILL DELIVER TO THE REGISTRAR AND TRANSFER AGENT SUCH CERTIFICATES AND OTHER INFORMATION AS SUCH TRANSFER AGENT MAY REASONABLY REQUIRE TO CONFIRM THAT THE
TRANSFER COMPLIES WITH THE FOREGOING RESTRICTIONS.]2

  
  

	1 	 Include for a Global Note. 

	2 	 To be included if a restricted security, along with applicable transfer restrictions. 

 SOLAZYME, INC. 
          Note due             ,         

  

					
	No.	 	CUSIP No.:	 	
		 	ISIN No.:	 	
			
		 	$	 	

 SOLAZYME, INC., a Delaware corporation (the “Issuer”), for value received promises to
pay to CEDE & CO. or registered assigns the principal sum of          DOLLARS on             ,
        . 
 Interest Payment Dates:     [,
        ,         ] and                     
(each, an “Interest Payment Date”), commencing on             ,         . 

Interest record dates:              and
             (each, a “record date”). 

Reference is made to the further provisions of this Note contained herein, which will for all purposes have the same effect as if set
forth at this place. 

 IN WITNESS WHEREOF, the Issuer has caused this Note to be signed manually or by facsimile by
its duly authorized officers. 
  

			
	SOLAZYME, INC.
		
	By:	 	  

	Name:	 	
	Title:	 	
		
	By:	 	  

	Name:	 	
	Title:	 	

 This is one of the Notes of the series designated herein and referred to in the
within-mentioned Indenture. 
 Dated:             ,
         
  

			
	Wells Fargo Bank, National Association, as Trustee
		
	By:	 	  

		 	Authorized Signatory

 (REVERSE OF NOTE) 
 SOLAZYME, INC. 
          Note due
            ,          
  

	 	1.	Interest. 

Solazyme, Inc. (the “Issuer”) promises to pay interest on the principal amount of this Note at the
rate per annum described above. Cash interest on the Notes will accrue from             ,         , or the most recent Interest Payment
Date to which payment has been paid or provided for[3;
provided, that if an Interest Payment Date for this Note falls a day that is not a business day the Interest Payment Date shall be postponed to the next succeeding business day, unless such next succeeding business day would be in the following
month, in which case the Interest Payment Date shall be the immediately preceding business day. Interest on this Note will be paid to but excluding the relevant Interest Payment Date. The Issuer will pay interest [semi-annually] [quarterly] in
arrears on each Interest Payment Date, commencing             ,         ]. Interest will be computed on the basis of [a 360-day year consisting of twelve 30-day months and, for partial months, on the basis of actual days elapsed in a 30-day month] [on the
basis of the actual number of days elapsed in an interest period and a 360-day year]. 

The Issuer shall pay interest on overdue principal from time to time on demand at the rate borne by the Notes and on overdue installments
of interest (without regard to any applicable grace periods) to the extent lawful. 
 [The interest rate for each interest
period will be determined by the calculation agent. Initially, [—] will act as calculation agent. The Issuer may change any calculation agent without notice to the Holders. The interest rate for a
particular interest period will be a per annum rate equal to three-month USD LIBOR as determined on the interest determination date plus     %. The interest determination date for an interest period will be the second
London business day preceding such interest period. 
 A London business day is a day on which dealings in deposits in U.S.
dollars are transacted in the London interbank market. 
 On any interest determination date, USD LIBOR will be equal to the
offered rate for deposits in U.S. dollars having an index maturity of three months, 
  

 

	3 	 Bracketed text in Section 1 to be included if and to extent applicable in context of floating or fixed rate notes. 

 
in amounts of at least $1,000,000, as such rate appears on “Reuters Page LIBOR01” at approximately 11:00 a.m., London time, on such interest determination date. If, on an interest
determination date, such rate does not appear on the “Reuters Page LIBOR01” as of 11:00 a.m. (London time), or if the “Reuters Page LIBOR01” is not available on such date, the calculation agent will obtain such rate from
Bloomberg L.P.’s page “BBAM.” 
 If no offered rate appears on “Reuters Page LIBOR01” or Bloomberg L.P.
page “BBAM” on an interest determination date at approximately 11:00 a.m., London time, then the calculation agent (after consultation with the Issuer) will select four major banks in the London interbank market and shall request each of
their principal London offices to provide a quotation of the rate at which three-month deposits in U.S. dollars in amounts of at least $1,000,000 are offered by it to prime banks in the London interbank market, on that date and at that time, that is
representative of single transactions at that time. If at least two quotations are provided, USD LIBOR will be the arithmetic average of the quotations provided. Otherwise, the calculation agent will select three major banks in New York City and
shall request each of them to provide a quotation of the rate offered by them at approximately 11:00 a.m., New York City time, on the interest determination date for loans in U.S. dollars to leading European banks having an index maturity of three
months for the applicable interest period in an amount of at least $1,000,000 that is representative of single transactions at that time. If three quotations are provided, USD LIBOR will be the arithmetic average of the quotations provided.
Otherwise, the rate of USD LIBOR for the next interest period will be set equal to the rate of USD LIBOR for the then current interest period. 
 Upon request from any Holder, the calculation agent will provide the interest rate in effect on the Notes for the current interest period and, if it has been determined, the interest rate to be in effect
for the next interest period. 
 Dollar amounts resulting from such calculation will be rounded to the nearest cent, with one-half cent being rounded upward.] 
  

	 	2.	Paying Agent. 

 Initially, Wells
Fargo Bank, National Association (the “Trustee”) will act as paying agent. The Issuer may change any paying agent without notice to the Holders. 
  

	 	3.	Indenture; Defined Terms. 

 This
Note is one of the              Notes due             ,         
(the “Notes”) issued under an indenture dated as of                      (the “Indenture”) by and among the
Issuer and the Trustee, and established pursuant to an [Officer’s Certificate] [supplemental indenture] dated                     ,
issued pursuant to Sections 2.01 and 2.03 of the Indenture. This Note is a “Security” and the Notes are “Securities” under the Indenture. 

  
 6 

 For purposes of this Note, unless otherwise defined herein, capitalized terms herein are
used as defined in the Indenture. The terms of the Notes include those stated in the Indenture and those made part of the Indenture by reference to the Trust Indenture Act of 1939 (15 U.S.C. Sections 77aaa-77bbbb) (the “TIA”), as in
effect on the date of the Indenture until such time as the Indenture is qualified under the TIA, and thereafter as in effect on the date on which the Indenture is qualified under the TIA. Notwithstanding anything to the contrary herein, the Notes
are subject to all such terms, and holders of Notes are referred to in the Indenture and the TIA for a statement of them. To the extent the terms of the Indenture and this Note are inconsistent, the terms of the Indenture shall govern. 

 

	 	4.	Denominations; Transfer; Exchange. 

 The Notes are in registered form, without coupons, in denominations of $2,000 and multiples of $1,000 thereafter. A Holder shall register the transfer or exchange of Notes in accordance with the
Indenture. The Issuer may require a Holder, among other things, to furnish appropriate endorsements and transfer documents and to pay certain transfer taxes or similar governmental charges payable in connection therewith as permitted by the
Indenture. [The Issuer need not issue, authenticate, register the transfer of or exchange any Notes or portions thereof for a period of fifteen (15) days before the mailing of a notice of redemption, nor need the Issuer register the transfer or
exchange of any Note selected for redemption in whole or in part.] 
  

	 	5.	Amendment; Supplement; Waiver. 

Subject to certain exceptions, the Notes and the provisions of the Indenture relating to the Notes may be amended or supplemented and any
existing default or Event of Default or compliance with certain provisions may be waived with the written consent of the Holders of at least a majority in aggregate principal amount of all series of Outstanding Securities (including the Notes) under
the Indenture that are affected by such amendment, supplement or waiver (voting as a single class). Without notice to or consent of any Holder, the parties thereto may amend or supplement the Indenture and the Notes to, among other things, cure any
ambiguity, defect or inconsistency or comply with any requirements of the Commission in connection with the qualification of the Indenture under the TIA, or make any other change that would not reasonably be expected to adversely affect the rights
of any Holder of a Note in any material respect. 

  
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	 	6.	Defaults and Remedies. 

 If an
Event of Default (other than certain bankruptcy Events of Default with respect to the Issuer) under the Indenture occurs with respect to the Notes and is continuing, then the Trustee may and, at the direction of the Holders of at least 25% in
principal amount of the outstanding Notes, shall by written notice, require the Issuer to repay immediately the entire principal amount of the Outstanding Notes, together with all accrued and unpaid interest and premium, if any. If a bankruptcy
Event of Default with respect to the Issuer occurs and is continuing, then the entire principal amount of the Outstanding Notes will automatically become due immediately and payable without any declaration or other act on the part of the Trustee or
any Holder. Holders of Notes may not enforce the Indenture or the Notes except as provided in the Indenture. The Trustee is not obligated to enforce the Indenture or the Notes unless it has received indemnity as it reasonably requires. The Indenture
permits, subject to certain limitations therein provided, Holders of a majority in aggregate principal amount of the Notes then outstanding to direct the Trustee in its exercise of any trust or power. The Trustee may withhold from Holders of Notes
notice of certain continuing defaults or Events of Default if it determines that withholding notice is in their interest. 
  

	 	7.	Authentication. 

 This Note shall
not be valid until the Trustee manually signs the certificate of authentication on this Note. 
  

	 	8.	Abbreviations and Defined Terms. 

Customary abbreviations may be used in the name of a Holder of a Note or an assignee, such as: TEN COM (= tenants in common), TEN ENT
(= tenants by the entireties), JT TEN (= joint tenants with right of survivorship and not as tenants in common), CUST (= Custodian), and U/G/M/A (= Uniform Gifts to Minors Act). 

 

	 	9.	CUSIP Numbers. 

 Pursuant to a
recommendation promulgated by the Committee on Uniform Security Identification Procedures, the Issuer has caused CUSIP numbers to be printed on the Notes as a convenience to the Holders of the Notes. No representation is made as to the accuracy of
such numbers as printed on the Notes and reliance may be placed only on the other identification numbers printed hereon. 
  

	 	10.	Governing Law. 

 The laws of the
State of New York shall govern the Indenture and this Note thereof. 

  
 8 

 ASSIGNMENT FORM 
 To assign this Note, fill in the form below: 
 I or we assign and transfer this Note to

 (Print or type assignee’s name, address and zip code) 

(Insert assignee’s soc. sec. or tax I.D. No.) 
 and irrevocably appoint                              agent to
transfer this Note on the books of the Issuer. The agent may substitute another to act for him. 
  
                                  
                                         
                                         
                                         
                                 

Date:                     
                            Your Signature:
                                         
                                

 

                         
                                         
                                         
                                         
                                        

 Sign exactly as your name appears on the other side of this Note. 

 

					
		 		 	  

		 		 	Signature
			
	Signature Guarantee:	 		 	
	  
  
	 		 	  

	Signature must be guaranteed	 		 	Signature

 Signatures must be guaranteed by an “eligible guarantor institution” meeting the requirements
of the Registrar, which requirements include membership or participation in the Security Transfer Agent Medallion Program (“STAMP”) or such other “signature guarantee program” as may be determined by the Registrar in
addition to, or in substitution for, STAMP, all in accordance with the United States Securities Exchange Act of 1934, as amended. 
  

  
 9 

 SCHEDULE OF EXCHANGES OF NOTES 

The following exchanges of a part of this Global Note for Physical Notes or a part of another Global Note have been made: 

 

									
	 Date of Exchange
	 	 Amount of decrease
in principal amount
of this Global
Note
	 	 Amount of increase
in principal amount
of this Global
Note
	  	Principal amount of
this Global Note
following such
decrease (or
increase)	  	Signature of
authorized officer of
Trustee
		 		 		  		  	
		 		 		  		  	
		 		 		  		  	
		 		 		  		  	

  
 10EX-10.1

 EXHIBIT 10.1 

EXECUTION VERSION 

January 31, 2014 
 To: The Lenders under the
Senior Credit Agreement (as defined below) 
 Re: ABE South Dakota, LLC – January 2014 Waiver Agreement 

Ladies and Gentlemen: 
 Reference is hereby made
to that certain Amended and Restated Senior Credit Agreement, dated as of June 16, 2010 (as amended, restated, supplemented or otherwise modified from time to time, the “Credit Agreement”), by and among ABE South Dakota, LLC
(f/k/a Heartland Grain Fuels, L.P.), as Borrower (the “Borrower”), each of the Lenders from time to time party thereto, Wilmington Trust, National Association, as successor to Portigon AG, New York Branch in its capacity as
administrative agent for the Lenders (the “Administrative Agent”) and Wilmington Trust, National Association, as successor to Portigon AG, New York Branch in its capacity as collateral agent for the Senior Secured Parties (the
“Collateral Agent”). Capitalized terms used herein but not otherwise defined herein shall have the respective meanings set forth in the Credit Agreement. 

A. Limited Waiver of the Obligation to Make BNSF Lease Subject to Aberdeen Mortgage. 

Pursuant to Section 3.03(a) and paragraph 3 of Schedule 3.03(a) of the Agreement of Resignation, Appointment and Acceptance, dated as of
March 7, 2013, among the Borrower, Portigon AG, New York Branch, as Resigning Agent, and Wilmington Trust, National Association, as Successor Agent (the “Agency Succession Agreement”), the Borrower represented and warranted
that it was in default of Section 7.01(l)(i) of the Credit Agreement as it relates to the obligation to provide a supplement to the Aberdeen Mortgage granting a Lien over the BNSF Lease (such obligation, the “BNSF Lease
Obligation”). 
 Pursuant to a request made to the Administrative Agent on December 16, 2013, a copy of which is attached
hereto as Annex A (the “Waiver Request”), the Borrower has requested, inter alia, a waiver of the BNSF Lease Obligation. 

By signing below, each Lender waives any Default or Event of Default that has occurred and is continuing as a result of the Borrower’s
failure to satisfy the BNSF Lease Obligation. Notwithstanding the preceding sentence, by signing below, the Borrower agrees, by no later than June 30, 2014, to satisfy the BNSF Lease Obligations. 

 B. Conditions to Effectiveness. 

This letter agreement and the waivers and consents set forth herein shall become effective as of January 31, 2014 upon satisfaction of
each of the following conditions: 
 (a) execution and delivery of this letter by the Required Lenders, the Borrower and the Administrative
Agent; and 
 (b) satisfaction by the Borrower of its obligation, under Section 3.04 of the Credit Agreement, to pay to the
Administrative Agent for the ratable account of each Lender additional interest on the Loans at 2% per annum (such additional interest, the “Default Interest”) that accrued through the date hereof as a result of certain Events
of Default, in the amount as set forth in clause (a) of paragraph C below. 
 C. Direction to Administrative Agent. 

By signing below, each Lender: 

(a) confirms to the Administrative Agent that the aggregate amount of the Default Interest due under Section 3.04 of the Credit Agreement
as of the date hereof is $1,058,278.89 and 
 (b) authorizes and directs the Administrative Agent to execute this letter agreement. 

D. Miscellaneous. 
 THIS LETTER AGREEMENT
SHALL BE GOVERNED BY, AND CONSTRUED IN ACCORDANCE WITH, THE LAWS OF THE STATE OF NEW YORK, UNITED STATES OF AMERICA, WITHOUT REFERENCE TO CONFLICTS OF LAWS (OTHER THAN SECTION 5-1401 OF THE NEW YORK GENERAL OBLIGATIONS LAW). 

Notwithstanding anything contained herein, these waivers (i) are limited waivers, (ii) are effective only with respect to the
transactions described herein for the specific instance and the specific purpose for which they are given, (iii) shall not be effective for any other purpose or transaction, and (iv) do not constitute a basis for a subsequent waiver,
consent or approval with respect to any of the provisions of the Credit Agreement. Except as expressly set forth herein, nothing herein shall constitute a waiver by the Lenders of any Default or Event of Default or a waiver by the Lenders of any
right, power or remedy available to the Lenders or the other Senior Secured Parties under the Credit Agreement, whether any such defaults, rights, powers or remedies presently exist or arise in the future. 

This letter agreement is a Financing Document under the Credit Agreement. 

  
 2 

 This letter agreement may be executed in any number of counterparts and by the different parties
hereto on separate counterparts, each of which when so executed and delivered shall be an original, but all of which shall together constitute one and the same instrument. Delivery of an executed counterpart of a signature page of this letter
agreement by facsimile, portable document format, e-mail or other electronic delivery shall be effective as delivery of a manually executed counterpart of this letter agreement. 

Please feel free to contact us with any questions on this matter. 

 

			
	Very truly yours,
	
	WILMINGTON TRUST, NATIONAL ASSOCIATION,
	as Administrative Agent
		
	By:	 	/s/ Josh James
		 	Name: Joshua G. James
		 	Title: Assistant Vice President

  
 3 

			
	Accepted and Agreed:
	
	ABE SOUTH DAKOTA, LLC,
	as Borrower
		
	By:	 	/s/ Richard Peterson
	Name: Richard R. Peterson
	Title: CEO

  
 4 

 
			
	PORTIGON AG, NEW YORK BRANCH,
	as Lender
		
	By:	 	 
		 	Name:
		 	Title:
		
	By:	 	 
		 	Name:
		 	Title:

  
 5 

 
			
	OSM HEARTLAND, LLC,
	as Lender
		
	By:	 	 
		 	Name:
		 	Title:

  
 6 

 
			
	BANCO SANTANDER, S.A., NEW YORK BRANCH,
	as Lender
		
	By:	 	/s/ Rita Walz Cuccioli
		 	Name: Rita Walz Cuccioli
		 	Title: Executive Director
		
	By:	 	/s/ Terence Corcoran
		 	Name: Terence Corcoran
		 	Title: Senior Vice President

  
 7 

 
			
	 FARM CREDIT BANK OF TEXAS, 

as Lender

		
	By:	 	/s/ Alan Robinson
		 	 Name: Alan Robinson
 Title: Vice
President

  
 8 

 
			
	COÖPERATIEVE CENTRALE RAIFFEISEN-BOERENLEENBANK B.A., “RABOBANK NEDERLAND”, NEW YORK BRANCH,
	as Lender
		
	By:	 	/s/ John S Yusl
		 	Name: John S Yusl III
		 	Title: Vice President
		
	By:	 	/s/ Ben Matz
		 	Name: Benjamin Matz
		 	Title: Vice President

  
 9 

 
			
	NORDKAP AG,
	as Lender
		
	By:	 	/s/ K. Rotter
		 	Name: K. Rotter
		 	Title:
		
	By:	 	/s/ C. Waldmeier
		 	Name: Christa Waldmeier
		 	Title:

  
 10 

 
			
	KEB NY FINANCIAL CORP.,
	as Lender
		
	By:	 	 
		 	Name:
		 	Title:

  
 11

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