Document:

First Amendment of Pipelines and Terminals Agreement

 Exhibit 10.24 
 FIRST AMENDMENT OF 
 PIPELINES AND TERMINALS AGREEMENT 

This First Amendment to the Pipelines and Terminals Agreement is executed by Holly Energy Partners, L.P.
(“HEP”) and Alon USA, L.P. (“Alon”) (collectively, the “Parties”) to be effective as of the 1st day of September, 2008. 
 WHEREAS, HEP and Alon (collectively, the “Parties”), wish to make certain amendments to the Pipelines and Terminals Agreement executed on February 28, 2005 and amended by the Letter
Agreement dated January 25, 2005, and the Second Letter Agreement dated June 29, 2007 (as amended, the “Agreement”); 
 NOW, THEREFORE, the parties have agreed to certain changes to the terms and provisions of Exhibit C to the Agreement and now wish to amend the Pipelines and Terminals Agreement to evidence same.

 In consideration of the mutual covenants contained herein and other good and valuable consideration, the receipt and
sufficiency of which is hereby acknowledged, the parties hereby amend the Agreement as follows: 
 Section 1 of Exhibit C to the Agreement
is hereby amended and restated in-its entirety as follows: 
 Each of the service fees listed in this Exhibit C will adjust at
the beginning of each Contract Year by an amount equal to the percentage change from the previous Contract Year in the average terminal fees charged by Nustar for Abernathy, Texas and Truman Arnold for Caddo Mills, Texas. 

Effective September 1, 2008, the fees charged by Nustar Abernathy are $.30 per barrel and the fees charged by Truman Arnold Caddo
Mills are $.36 per barrel. The average of these fees is $.33 per barrel and will be used as the base to calculate future changes to the fees in Exhibit C. 
 Capitalized terms not otherwise defined herein shall have the meanings set forth in the Agreement. As amended hereby, the Agreement is ratified in its entirety. 

[Signature page -follows] 

First Amendment to Pipelines and Terminals Agreement 

  
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 IN WITNESS WHEREOF, the undersigned parties have executed this Amendment as of
September 1, 2008. 
  

											
	ALON USA, L.P.	 		 	
					
	        By:	 	ALON USA GP, LLC,	 		 		 	
		 	Its General Partner	 		 		 	
						
		 	By:	 	/s/ Jeff D. Morris	 		 	Date:	 	August 20, 2008
		 		 	Jeff D. Morris	 		 		 	
		 		 	President and Chief Executive Officer	 		 		 	

  

											
	HOLLY ENERGY PARTNERS, L.P.	 		 	
					
	        By:	 	HEP LOGISTICS HOLDINGS, L.P.,	 		 		 	
		 	General Partner	 		 		 	
						
		 	By:	 	HOLLY LOGISTIC SERVICES, L.L.C.,	 		 		 	
		 		 	General Partner	 		 		 	
						
		 	By:	 	/s/ David G. Blair	 		 	Date:	 	8/21/08
		 		 	Senior Vice President	 		 		 	

 First Amendment to Pipelines and Terminals Agreement 

  
 Page 2 of 2Second Amendment to Pipelines and Terminals Agreement

 Exhibit 10.25 
 Execution Version 
 SECOND AMENDMENT 

TO PIPELINES AND TERMINALS AGREEMENT 
 This Second Amendment (the “Second Amendment”) to the Pipelines and Terminals Agreement dated February 28, 2005 (the “Original Agreement”), by and between Holly Energy Partners,
L.P. (“HEP”) and Alon USA, L.P. (“ALON”) (collectively, the “Parties”), is entered into as of the 1st day of March, 2011 (the “Effective Date”). 

WHEREAS, the Original Agreement has been previously amended by a Letter Agreement dated January 25, 2005, a Second Letter Agreement
dated June 29, 2007, and a First Amendment of Pipelines and Terminals Agreement dated effective September 1, 2008 (the Original Agreement, as amended to the date hereof; being referred to herein as the “Agreement”); and

 WHEREAS, ALON, as agent for J. Aron & Company (“J. Aron”), desires to utilize ALON’s rights under the
Agreement to transport and store, and obtain handling services for, product owned by J. Aron. 
 NOW, THEREFORE, the Parties and
J. Aron agree to add the following terms as Section 22 to the Agreement: 
 SECTION 22 

(a) J. Aron Product. From time to time during the term of the Agreement, ALON may designate in writing to HEP that all of the
products being stored and handled by HEP pursuant to the Agreement are owned by J. Aron (the “J. Aron Product”), other than ethanol and additives. Upon receipt of such written designation, HEP shall note in its records and account for
separately the J. Aron ownership until such time as J. Aron notifies HEP in writing that ownership in such product has been transferred from J. Aron to ALON, it being the intention that HEP shall not be required to recognize any other transfers of
ownership of any stored product (other than transfers from J. Aron to ALON) unless such transfer and recognition are agreed to in writing by HEP in its sole discretion. ALON shall act as J. Aron’s sole agent for all purposes of the Agreement,
and, subject to paragraph 22(b) below, HEP shall be entitled to follow ALON’s instructions with respect to all J. Aron Product that is transported, stored or handled by HEP pursuant to the Agreement. For avoidance of doubt, specifically,
without, limitation, but subject to paragraph 22(b) below, HEP shall have the right to transfer possession of J. Aron Product to ALON’s customers or otherwise as instructed by ALON. 

(b) J. Aron Instructions. Notwithstanding the agency provisions of paragraph 22(a) above, at any time HEP has possession of any J.
Aron Product under this Agreement, J. Aron shall have the right to either (i) deliver to HEP a written notice instructing HEP to promptly within a reasonable time stop all transfers of J. Aron Product into and out of HEP’s pipeline and
storage system covered by this Agreement (the “Covered System”), and thereafter to promptly within a reasonable time evacuate all J. Aron Product then being held by HEP out of the Covered System to a destination listed by J. Aron in the
written notice, or (ii) deliver to HEP a written 

 
notice instructing HEP to, accept further transfers of J. Aron Product into the Covered System for a period of thirty (30) days (solely to allow J. Aron to transport product owned by J. Aron
and located at ALON’s Big Springs, Texas, refinery), and to promptly within a reasonable time evacuate all J. Aron Product out of the Covered System to a destination listed by J. Aron in the written notice, in each case pursuant to terms and
conditions identical to those set forth in this Agreement. Upon receipt of instructions from J. Aron as described in clause (i) or (ii) of the preceding sentence, HEP will cease taking instructions from ALON with respect to J. Aron Product
and will follow the written instructions received from J. Aron pursuant to clause (i) or (ii) of the preceding sentence. Upon issuance of instructions as described in clause (i) or (ii) above, J. Aron will be liable to HEP for
all costs under this Agreement with respect to J. Aron Product as well as all incremental or additional costs of complying with the instructions sent by J. Aron under clause (i) or (ii) above. After J. Aron delivers to HEP instructions as
described in clause (i) or (ii) above, J. Aron may request that HEP engage in discussions regarding other instructions with respect to J. Aron Product, but HEP shall have no obligation to follow or recognize such other instructions unless
such other instructions are agreed to by HEP and documented to HEP’s satisfaction, in each case in HEP’s sole discretion. 
 (c) Pro Rata Treatment. All J. Aron Product shall be subject to pro rata treatment pursuant to the Agreement with respect to matters related to shortages and overages of quantity, specifications,
and dealing with trans-mix. 
 (d) Product Measurements; Inventory Reports; Notices. ALON and J. Aron shall each have the
product measurement rights provided for in Section 8 of this Agreement for so long as any J. Aron Product is located in the Refined Product Pipelines or Refined Product Terminals. HEP shall send the inventory reports described in Section 8
of this Agreement and notices delivered pursuant to Section 20 of this Agreement to J. Aron at the following address, with copies to ALON: 
 James Brush 
 200 West Street 

New York, N.Y. 10282 
 Tel: (212) 902-9874 
 ficc-jaron-oilops@ny.email.gs.com 

John Thomas 

200 West Street 

New York, N.Y. 10282 
 Tel: (212) 902-1806 
 John.thomas@gs.com 

(e) All Provisions in Effect. All provisions of the Agreement, as amended or adjusted by this Section 22, shall be in full
force and effect with respect to J. Aron Product as if the J. Aron Product was owned by ALON. 

  
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 (f) Payment by ALON. Except as set forth in Section 22(b) above, ALON shall be
solely liable under this Agreement for all amounts owed to HEP under this Agreement with respect to J. Aron Product. Any failure to timely pay any such amounts shall be deemed a default under this Agreement, and HEP shall be entitled to enforce all
of its remedies with respect to such default as set forth in this Agreement or otherwise available at law or in equity. 

  
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 This Second Amendment has been executed as of the date first above written. 

 

					
	HEP:
	
	HOLLY ENERGY PARTNERS, L.P.
		
	By:	 	Holly Logistics Holdings, L.P.
		 	General Partner
			
		 	By:	 	Holly Logistics Services, L.L.C.
		 		 	General Partner
			
		 	By:	 	 /s/ David G. Blair

		 	Name:	 	David G. Blair
		 	Title:	 	President
		 	Date:	 	2/22/11
	
	ALON:
	
	ALON USA, L.P.
		
	By:	 	ALON USA GP, LLC, General Partner
			
		 	By:	 	 /s/ Alan P. Moret

		 	Name:	 	Alan P. Moret
		 	Title:	 	Senior Vice President
		 	Date:	 	

 J. Aron hereby agrees to be bound by this Second Amendment and such portions of the Agreement that
apply to J. Aron or J. Aron Product. 
  

			
	J. ARON & COMPANY
		
	By:	 	 /s/ Colleen Foster

	Name: Colleen Foster
	Title: Managing Director
	Date: 2/23/2011

  
 4Third Amendment to Pipelines and Terminals Agreement

 Exhibit 10.26 
 THIRD AMENDMENT 
 TO PIPELINES AND TERMINALS AGREEMENT 

This Third Amendment (the “Third Amendment”) to the Pipelines and Terminals Agreement dated
February 28, 2005 (the “Original Agreement”), by and between Holly Energy Partners, L.P. (“EP”) and Alon USA, LP. (“ALON”) (collectively, the “Parties”), is entered into as of the 6th day of June, 2011. 

WHEREAS, the Original Agreement has been previously amended by (i) a Letter Agreement dated January 25, 2005, (ii) a
Second Letter Agreement dated June 29, 2007, (iii) a Third Letter Agreement dated April 1, 2011, (iv) a First Amendment of Pipelines and Terminals Agreement dated effective September 1, 2008, and (v) a Second Amendment
to Pipelines and Terminals Agreement dated March 1, 2011 (the Original Agreement, as amended to the date hereof, being referred to herein as the “Agreement”); and 

NOW, THEREFORE, the Parties agree that the Agreement is hereby amended as follows: 

1. Section 15(a)(vi). Section 15(a)(vi) of the Agreement is hereby amended by adding the following language to
the end of the first sentence of that Section: 
 and (C) any offset credited to Alon in accordance with
Section 15(d) below as a result of prior Net Excess Revenues. 
 2. Section 15(d).
Section 15(d) of the Agreement is hereby amended and restated so that it shall read in its entirety as follows: 

(d) Commencing January 1, 2011 no Deficiency Payments made in any prior calendar year can be used by Alon to offset pipeline
tariff and terminal fee payment obligations for volumes shipped or terminalled in excess of its Minimum Volume. Commitment with respect to a Contract Quarter occurring in any subsequent calendar year. Deficiency Payments made with respect to all
periods after January 1, 2011 may be used by Akin to offset Alan’s pipeline tariff and terminal fee payment obligations for volumes shipped or terminalled in excess of its Minimum Volume Commitment for any subsequent Contract Quarter
during only that same calendar year. Commencing with the first Contract Quarter of 2011 and for all Contract Quarters thereafter, in the event Alon has paid pipeline wilts or terminal fees with respect to volumes shipped during a Contract Quarter in
excess of its Minimum Volume Commitment with respect to such Contract Quarter (“Net Excess Revenues”), Alon may use such Net Excess Revenues to offset Atoll’s pipeline tariff and terminal fee payment obligations with respect to
subsequent Contract Quarters in that same calendar year and Contract Quarters ending in the next succeeding calendar year. 

  
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 (a) All Provisions in Effect. Except as amended hereby, all of the terms and
conditions of the Agreement shall remain in full force and effect as provided therein. 
 [Signatures appear on the
following page.] 

  
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 This Third Amendment has been executed as of the date first above written. 

 

					
	HEP:
	
	HOLLY ENERGY PARTNERS, L.P.
		
	By:	 	 Holly Logistics Holdings, L.P.
 General Partner

			
		 	By:	 	 Holly Logistics Services, L.L.C.,
 General Partner

			
		 	By:	 	/s/ David G. Blair
		 	Name:	 	David G. Blair
		 	Title:	 	President
		 	Date:	 	June 6, 2011
	
	ALON:
	
	ALON USA, L.P.
		
	By:	 	ALON USA GP, LLC, General Partner
			
		 	By:	 	/s/ Michael Oster
		 	Name:	 	Michael Oster
		 	Title:	 	Vice President
		 	Date:	 	June 6, 2011

 [SIGNATURE PAGE TO THIRD
AMENDMENT TO PIPELINES AND TERMINALS AGREEMENT]

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