ロドシクルス科

  ロドシクルス科（ロドシクルスか、Rhodocyclaceae）はPseudomonadota門ベータプロテオバクテリア綱ロドシクルス目の科の一つである。グラム陰性菌である。 ロドシクルス科は以下の属を含む(2024年9月現在)。メンバーにはかつてガンマプロテオバクテリア綱シュードモナス目のシュードモナス科に属していた属が多い。また、この科は2017年に改訂され、ロドシクルス目の他の科が追加された。 Azospira　アゾスピラ属 Reinhold-Hurek & Hurek 2000 (IJSEMリストに掲載 2000)、修正　Bae et al. 2007 (IJSEMリストに掲載 2007) 窒素固定により生育する従属栄養生物である。細胞は螺旋状または湾曲した桿状である。主要な呼吸キノンはユビキノン-8である。 Azovibrio　アゾビブリオ属 Reinhold-Hurek and Hurek 2000 (IJSEMリストに掲載 2000) Oryzomicrobium　オリゾミクロビウム属 Liu et al. 2017 (IJSEMリストに掲載 2017) Propionivibrio　プロピオニビブリオ属 Tanaka et al. 1991 (IJSEMリストに掲載 1991)、修正　Brune et al. 2002 (IJSEMリストに掲載 2002) 炭化水素の発酵によって嫌気的に生育し、脂肪酸、特にプロピオン酸を生成する。主要な呼吸キノンはユビキノン-8である。細胞は湾曲した桿体である。 Rhodocyclus　ロドシクルス属（タイプ属） Pfennig 1978 (IJSEMリストに掲載 1980)、修正　Imhoff et al. 1984 嫌気条件では光従属栄養的または光独立栄養的（電子供与体として水素分子を使用）に、好気条件では脂肪酸を栄養源として増殖する。主要な呼吸キノンはロドキノン-8である。細胞は湾曲した桿状または環状である。 Rugosibacter　 Corteselli et al. 2017 (IJSEMリストに掲載 2017)、修正　Kojima et al. 2022 (IJSEMリストに掲載 2023) "Candidatus Accumulibacter"　アキュムリバクター属 Hesselmann et al. 1999 (IJSEMリストに掲載 2020) "Dechlorobacter" Thrash et al. 2010 "Candidatus Proximibacter" Petriglieri et al. 2022 "Viridibacterium" Kang et al. 2017 Dechlorosoma　デクロロソマ属 Achenbach et al. 2001 (IJSEMリストに掲載 2001) 現在はアゾスピラ属のシノニムとされる。 Propionibacter　プロピオニバクター属 Meijer et al. 1999 (IJSEMリストに掲載 1999) 現在はプロピオニビブリオ属のシノニムとされる。 [脚注の使い方] ^ a b Garrity GM, Bell JA, Lilburn T (2005). “Family I. Rhodocyclaceae fam. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). Springer, New York. p. 887  ^ “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology: 1-6. (01 January 2006). doi:10.1099/ijs.0.64188-0.  ^ a b c d e f “Reclassification of Thiobacillus aquaesulis (Wood & Kelly, 1995) as Annwoodia aquaesulis gen. nov., comb. nov., transfer of Thiobacillus (Beijerinck, 1904) from the Hydrogenophilales to the Nitrosomonadales, proposal of Hydrogenophilalia class. nov. within the Proteobacteria, and four new families within the orders Nitrosomonadales and Rhodocyclales.”. International Journal of Systematic and Evolutionary Microbiology 67 (5): 1191–1205. (2017). doi:10.1099/ijsem.0.001927. hdl:10026.1/8740. PMID 28581923.  ^ Aharon Oren1 and George M. Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 August 2017). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 67, part 5, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (8): 2495-2498. doi:10.1099/ijsem.0.002156.  ^ a b NORBERT PFENNIG (Institut für Mikrobiologie der Gesellschaft für Strahlen- und Umweltforschung mbH, München, in Göttingen, Federal Republic of Germany) (01 April 1978). “Rhodocyclus purpureus gen. nov. and sp. nov., a Ring-Shaped, Vitamin B12-Requiring Member of the Family Rhodospirillaceae”. 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List of Prokaryotic names with Standing in Nomenclature. 2024年9月1日閲覧。 ^ a b B Reinhold-Hurek and T Hurek (Max-Planck-Institut für terrestrische Mikrobiologie, Arbeitsgruppe Symbioseforschung, Marburg, Germany) (01 March 2000). “Reassessment of the taxonomic structure of the diazotrophic genus Azoarcus sensu lato and description of three new genera and new species, Azovibrio restrictus gen. nov., sp. nov., Azospira oryzae gen. nov., sp. nov. and Azonexus fungiphilus gen. nov., sp. nov.”. International Journal of Systematic and Evolutionary Microbiology 50 (2): 649-659. doi:10.1099/00207713-50-2-649. PMID 10758872.  ^ a b “Notification that new names and new combinations have appeared in volume 50, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 50 (3): 951-953. (01 May 2000). doi:10.1099/00207713-50-3-951.  ^ Hee-Sung Bae1, Brian A. Rash1, Fred A. Rainey1, M. Fernanda Nobre2, Igor Tiago2, Milton S. da Costa3 and William M. Moe4 (1: Department of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA, 2: Departamento de Zoologia and Centro de Neurociências, Universidade de Coimbra, 3004-517 Coimbra, Portugal, 3: Departamento de Bioquímica and Centro de Neurociências, Universidade de Coimbra, 3001-401 Coimbra, Portugal, 4 Department of Civil and Environmental Engineering, Louisiana State University, Baton Rouge, LA 70803, USA) (01 July 2007). “Description of Azospira restricta sp. nov., a nitrogen-fixing bacterium isolated from groundwater”. International Journal of Systematic and Evolutionary Microbiology 57 (7): 1521-1526. doi:10.1099/ijs.0.64965-0. PMID 17625187.  ^ “Notification that new names and new combinations have appeared in volume 57, part 7, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 57 (10): 2189-2190. (01 October 2007). doi:10.1099/ijs.0.65508-0.  ^ Chi-Te Liu1,2,†, Shih-Yao Lin3,†, Asif Hameed3, You-Cheng Liu3, Yi-Han Hsu3, Wai-Tak Wong4, Ching-Han Tseng5, Huu-Sheng Lur4 and Chiu-Chung Young3,6 (1: Institute of Biotechnology, National Taiwan University, Taiwan, ROC, 2: Agricultural Biotechnology Research Center, Academia Sinica, Taipei 115, Taiwan, ROC, 3: Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, Taichung, Taiwan, ROC, 4: Department of Agronomy, National Taiwan University, Taipei, Taiwan, ROC, 5: Institute of Biotechnology, National Taiwan University, Taipei, Taiwan, ROC, 6: Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, ROC, † 共同筆頭著者) (01 February 2017). “Oryzomicrobium terrae gen. nov., sp. nov., of the family Rhodocyclaceae isolated from paddy soil”. International Journal of Systematic and Evolutionary Microbiology 67 (2): 183-189. doi:10.1099/ijsem.0.001565. PMID 27902185.  ^ a b Aharon Oren1 and George M Garrity2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 91904 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA) (01 May 2017). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 67, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 67 (5): 1099-1101. doi:10.1099/ijsem.0.001999.  ^ Kazuhiro Tanaka, Kazunori Nakamura & Eiichi Mikami (01 September 1990). “Fermentation of maleate by a gram-negative strictly anaerobic non-spore-former, Propionivibrio dicarboxylicus gen. nov., sp. nov.”. Archives of Microbiology 154: 323–328. doi:10.1007/BF00276526.  ^ “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB”. International Journal of Systematic and Evolutionary Microbiology 41 (2): 331. (01 April 1991). doi:10.1099/00207713-41-2-331.  ^ Andreas Brune, Wolfgang Ludwig and Bernhard Schink (01 March 2002). “Propionivibrio limicola sp. nov., a fermentative bacterium specialized in the degradation of hydroaromatic compounds, reclassification of Propionibacter pelophilus as Propionivibrio pelophilus comb. nov. and amended description of the genus Propionivibrio”. International Journal of Systematic and Evolutionary Microbiology 52 (2): 441-444. doi:10.1099/00207713-52-2-441. PMID 11931155.  ^ “Notification that new names and new combinations have appeared in volume 52, part 2, of the IJSEM. International Journal of Systematic and Evolutionary Microbiology”. International Journal of Systematic and Evolutionary Microbiology 52 (3): 691-692. (01 May 2002). doi:10.1099/00207713-52-3-691.  ^ Elizabeth M. Corteselli1, Michael D. Aitken1 and David R. Singleton1 (1: Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, NC 27599-7431, USA) (01 February 2017). “Rugosibacter aromaticivorans gen. nov., sp. nov., a bacterium within the family Rhodocyclaceae, isolated from contaminated soil, capable of degrading aromatic compounds”. International Journal of Systematic and Evolutionary Microbiology 67 (2): 311-318. doi:10.1099/ijsem.0.001622.  ^ Hisaya Kojima 1 2, Miho Watanabe 3, Naoyuki Miyata 3, Manabu Fukui 4 (1: The Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, 060-0819, Japan. kojimah@lowtem.hokudai.ac.jp., 2: Department of Biological Environment, Faculty of Bioresource Sciences, Akita Prefectural University, Shimo-Shinjyo Nakano, Akita, 010-0195, Japan., 3: Department of Biological Environment, Faculty of Bioresource Sciences, Akita Prefectural University, Shimo-Shinjyo Nakano, Akita, 010-0195, Japan., 4: The Institute of Low Temperature Science, Hokkaido University, Kita-19, Nishi-8, Kita-ku, Sapporo, 060-0819, Japan.) (02 September 2022). “Sulfuricystis multivorans gen. nov., sp. nov. and Sulfuricystis thermophila sp. nov., facultatively autotropic sulfur-oxidizing bacteria isolated from a hot spring, and emended description of the genus Rugosibacter”. Archives of Microbiology 204 (9): 595. doi:10.1007/s00203-022-03186-0. PMID 36053377.  ^ Aharon Oren1 and Markus Göker2 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Inhoffenstrasse 7B, 38124 Braunschweig, Germany) (01 August 2023). “Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 38”. International Journal of Systematic and Evolutionary Microbiology 73 (7): 5923. doi:10.1099/ijsem.0.005923.  ^ Rolf P.X. Hesselmann 1, Christoph Werlen 1, Dittmar Hahn 2, Jan Roelof van der Meer 1, Alexander J.B. Zehnder 1 (1: Swiss Federal Institute for Environmental Science and Technology (EAWAG) and Swiss Federal Institute of Technology (ETH), Dübendorf, Switzerland, 2: Swiss Federal Institute of Technology (ETH), Institute of Terrestrial Ecology, Soil Biology, Schlieren, Switzerland and Rutgers University, Dept. of Biology, Newark) (September 1999). “Enrichment, Phylogenetic Analysis and Detection of a Bacterium That Performs Enhanced Biological Phosphate Removal in Activated Sludge”. Systematic and Applied Microbiology 22 (3): 454-465. doi:10.1016/S0723-2020(99)80055-1. PMID 10553298.  ^ Aharon Oren1ORCID icon, George M. Garrity2,3, Charles T. Parker3, Maria Chuvochina4 and Martha E. Trujillo5 (1: The Institute of Life Sciences, The Hebrew University of Jerusalem, The Edmond J. Safra Campus, 9190401 Jerusalem, Israel, 2: Department of Microbiology & Molecular Genetics, Biomedical Physical Sciences, Michigan State University, East Lansing, MI 48824-4320, USA, 3: NamesforLife, LLC, PO Box 769, Okemos MI 48805-0769, USA, 4: Australian Centre for Ecogenomics, University of Queensland, St. Lucia QLD 4072, Brisbane, Australia, 5: Departamento de Microbiología y Genética, Campus Miguel de Unamuno, Universidad de Salamanca, 37007, Salamanca, Spain) (30 June 2020). “Lists of names of prokaryotic Candidatus taxa”. International Journal of Systematic and Evolutionary Microbiology 70 (7): 3956-4042. doi:10.1099/ijsem.0.003789.  ^ J Cameron Thrash 1, Jarrod Pollock, Tamas Torok, John D Coates (1: Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA) (18 November 2009). “Description of the novel perchlorate-reducing bacteria Dechlorobacter hydrogenophilus gen. nov., sp. nov. and Propionivibrio militaris, sp. nov.”. Applied Microbiology and Biotechnology 86: 335–343. doi:10.1007/s00253-009-2336-6. PMC 2822220. PMID 19921177. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2822220/.  ^ Francesca Petriglieri 1, Caitlin M Singleton 1, Zivile Kondrotaite 1, Morten K D Dueholm 1, Elizabeth A McDaniel 2 3, Katherine D McMahon 2 4, Per H Nielsen 1 (1: Center for Microbial Communities, Department of Chemistry and Bioscience, Aalborg Universitygrid.5117.2, Aalborg, Denmark., 2: Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, USA., 3: Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, Wisconsin, USA., 4: Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, Wisconsin, USA.) PMID=35467400 (25 April 2022). “Reevaluation of the Phylogenetic Diversity and Global Distribution of the Genus “Candidatus Accumulibacter””. ASM Journals 7 (3): e0001622. doi:10.1128/msystems.00016-22. PMC 9238405. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9238405/.  ^ Ji Young Kang 1, Jeesun Chun 2, Young Cheol Jung 2, Kwang Yeop Jahng 3 4 (1: Industrial Microbiology and Bioprocess Research Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup, 56212, Republic of Korea., 2: Department of Life Sciences, Chonbuk National University, Jeonju, 54896, Republic of Korea., 3: Department of Life Sciences, Chonbuk National University, Jeonju, 54896, Republic of Korea. goodear@chonbuk.ac.kr., 4: Research Center for Bioactive Materials, Chonbuk National University, Jeonju, 54896, Republic of Korea. (30 June 2017). “Viridibacterium curvum gen. nov., sp. nov., isolated from freshwater”. Journal of Microbiology 55: 514-519. doi:10.1007/s12275-017-7003-5. PMID 28664517.  ^ L A Achenbach, U Michaelidou, R A Bruce, J Fryman and J D Coates (Department of Microbiology and Center for Systematic Biology, Southern Illinois University, Carbondale 62901, USA) (01 March 2001). “Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position”. International Journal of Systematic and Evolutionary Microbiology 51 (2): 527-533. doi:10.1099/00207713-51-2-527. PMID 11321099.  ^ “Notification that new names and new combinations have appeared in volume 50, part 2, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 51 (3): 795-796. (01 May 2001). doi:10.1099/00207713-51-3-795.  ^ Wim G. Meijer1,2, Manny E. Nienhuis-Kuiper1 and Theo A. Hansen1 (1: Department of Microbiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Kerklaan 30, NL-9751 NN Haren, The Netherlands, 2: Department of Industrial Microbiology, University College Dublin, Dublin 4, Ireland Author for correspondence: Theo A. Hansen) (01 July 1999). “Fermentative bacteria from estuarine mud: Phylogenetic position of Acidaminobacter hydrogenoformans and description of a new type of Gram-negative, propionigenic bacterium as Propionibacter pelophilus gen. nov., sp. nov.”. International Journal of Systematic and Evolutionary Microbiology 49 (3): 1039-44. doi:10.1099/00207713-49-3-1039. PMID 10425761.  ^ “Notification that new names and new combinations have appeared in volume 49, part 3, of the IJSB”. International Journal of Systematic and Evolutionary Microbiology 49 (4): 1327-1328. (01 October 1999). doi:10.1099/00207713-49-4-1327.  Rhodocyclaceae J.P. Euzéby: List of Prokaryotic names with Standing in Nomenclature