ニトロバクター科

ニトロバクター科（Nitrobacteraceae）は真正細菌プロテオバクテリア門アルファプロテオバクテリア綱ヒフォミクロビウム目の科の一つである。 淡水や土壌に一般的に分布し、グラム陰性且つ好気性菌である。この科には、一部のマメ科植物に関連する根粒菌の属であるブラディリゾビウム属（Bradyrhizobium）などの植物関連細菌、かつて猫ひっかき病の原因と考えられていたアフィピア・フェリス（Afipia felis）などの動物関連細菌も含まれてる。海洋や土壌で見られるロドシュードモナス属（Rhodopseudomonas）などの自由生活性の細菌もある。ロドシュードモナス・パルストリス（Rhodopseudomonas palustris）DX-1株は水素を生成させずに電流を発生させることができ、微生物燃料電池の開発に利用するために研究されている。アフィピア属（Afipia）は大気中に生息し、炭素源としてジメチルスルホンを利用する。 この科の細菌は、アンモニアを亜硝酸塩に酸化すること、または亜硝酸塩を硝酸塩に酸化することによってエネルギーを得る。 現在認められている分類体系はList of Prokaryotic names with Standing in Nomenclature (LPSN)によって決められている。下記の系統樹は全ゲノム分析の結果に基づいている。 ^ R. E. Buchanan (1 July 1917). “Studies on the Nomenclature and Classification of the Bacteria: III. The Families of the Eubacteriales”. Journal of Bacteriology 2 (4): 347-350. doi:10.1128/jb.2.4.347-350.1917. PMC 378713. PMID 16558750. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC378713/.  ^ a b c d e f V. B. D. Skerman, Vicki. McGOWAN, P. H. A. Sneath (01 January 1980). “Approved Lists of Bacterial Names”. International Journal of Systematic and Evolutionary Microbiology 30 (1): 225-420. doi:10.1099/00207713-30-1-225.  ^ a b Winogradsky S (1892). “Contributions à la morphologie des organismes de la nitrification”. Arkhiv Biologicheskikh Nauk (St. Petersbourg) 1: 87-137.  ^ Buchanan RE (1917). “Studies on the Nomenclature and Classification of the Bacteria: III. The Families of the Eubacteriales”. J Bacteriol 2: 347-350.  ^ Garrity GM, Bell JA, Lilburn T (2005). “Family VII. Bradyrhizobiaceae fam. nov.”. In Brenner DJ, Krieg NR, Staley JT, Garrity GM. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria). Springer, New York. p. 438.  ^ “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 56 (1): 1-6. (01 January 2006). doi:10.1099/ijs.0.64188-0.  ^ D J Brenner, D G Hollis, C W Moss, C K English, G S Hall, J Vincent, J Radosevic, K A Birkness, W F Bibb, F (1 November 1991). “Proposal of Afipia gen. nov., with Afipia felis sp. nov. (formerly the cat scratch disease bacillus), Afipia clevelandensis sp. nov. (formerly the Cleveland Clinic Foundation strain), Afipia broomeae sp. nov., and three unnamed genospecies”. Journal of Clinical Microbiology 29 (11): 2450-2460. doi:10.1128/jcm.29.11.2450-2460.1991. PMC 270354. PMID 1774249. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC270354/.  ^ “Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB”. International Journal of Systematic and Evolutionary Microbiology 42 (2): 327-328. (01 April 1992). doi:10.1099/00207713-42-2-327.  ^ Zavarzin GA (1961). “Budding bacteria”. Mikrobiologiya. 30. pp. 952-975.  ^ D. C. JORDAN (01 January 1982). “NOTES: Transfer of Rhizobium japonicum Buchanan 1980 to Bradyrhizobium gen. nov., a Genus of Slow-Growing, Root Nodule Bacteria from Leguminous Plants”. International Journal of Systematic and Evolutionary Microbiology 32 (1): 136-139. doi:10.1099/00207713-32-1-136.  ^ Peter Kämpfer, Chiu-Chung Young, A. B. Arun, Fo-Ting Shen, Udo Jäckel, Ramon Rosselló-Mora, Wei-An Lai, P. D. Rekha (01 October 2006). “Pseudolabrys taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from soil”. International Journal of Systematic and Evolutionary Microbiology 56 (10): 2469-2472. doi:10.1099/ijs.0.64124-0. PMID 17012581.  ^ “Notification that new names and new combinations have appeared in volume 56, part 10, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 57 (1): 2-3. (01 January 2007). doi:10.1099/ijs.0.64874-0.  ^ Hassan Tirandaz, Seyed Mohammad Mehdi Dastgheib, Mohammad Ali Amoozegar, Mahmoud Shavandi, Rafael R. de la Haba, Antonio Ventosa (01 December 2015). “Pseudorhodoplanes sinuspersici gen. nov., sp. nov., isolated from oil-contaminated soil”. International Journal of Systematic and Evolutionary Microbiology 65 (Pt_12): 4743-4748. doi:10.1099/ijsem.0.000643. PMID 26420766.  ^ Aharon Oren, George M. Garrity (01 March 2016). “Notification that new names of prokaryotes, new combinations and new taxonomic opinions have appeared in volume 65, part 12, of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 66 (3): 1600-1602. doi:10.1099/ijsem.0.000936.  ^ Akira Hiraishi, Yoko Ueda (01 October 1994). “Rhodoplanes gen. nov., a New Genus of Phototrophic Bacteria Including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov.”. International Journal of Systematic and Evolutionary Microbiology 44 (4): 665-673. doi:10.1099/00207713-44-4-665.  ^ “Notification that New Names and New Combinations Have Appeared in Volume 44, No. 4, of the IJSB”. International Journal of Systematic and Evolutionary Microbiology 45 (1): 199-200. (01 January 1995). doi:10.1099/00207713-45-1-199.  ^ V. Czurda & E. Maresch (January 1937). “Beitrag zur Kenntnis der Athiorhodobakterien-Gesellschaften”. Archiv für Mikrobiologie 8: 99–124. doi:10.1007/BF00407193.  ^ Sofie E De Meyer, An Coorevits, Anne Willems (June 2012). “Tardiphaga robiniae gen. nov., sp. nov., a new genus in the family Bradyrhizobiaceae isolated from Robinia pseudoacacia in Flanders (Belgium)”. Systematic and Applied Microbiology 35 (4): 205-214. doi:10.1016/j.syapm.2012.02.002. PMID 22444281.  ^ “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 62 (Pt_11): 2549-2554. (01 November 2012). doi:10.1099/ijs.0.048033-0.  ^ Gi-Yong Jung, In-Hyun Nam, So-Jeong Kim (16 May 2022). “Undibacter mobilis gen. nov., sp. nov. isolated from an artificial wetland in Okcheon, Korea”. International Journal of Systematic and Evolutionary Microbiology 72 (5): 5369. doi:10.1099/ijsem.0.005369. PMID 35576239.  ^ Aharon Oren, George M. Garrity (30 August 2022). “Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 72, part 5 of the IJSEM”. International Journal of Systematic and Evolutionary Microbiology 72 (8): 5476. doi:10.1099/ijsem.0.005476.  ^ Kwang Kyu Kim, Keun Chul Lee, Mi Kyung Eom, Jong-Shik Kim, Dae-Shin Kim, Suk-Hyung Ko, Byung-Hyuk Kim & Jung-Sook Lee (06 March 2014). “Variibacter gotjawalensis gen. nov., sp. nov., isolated from soil of a lava forest”. Antonie van Leeuwenhoek 105: 915–924. doi:10.1007/s10482-014-0146-z. PMID 24599521.  ^ Aharon Oren, George M. Garrity (01 July 2014). “List of new names and new combinations previously effectively, but not validly, published”. International Journal of Systematic and Evolutionary Microbiology 64 (Pt_7). doi:10.1099/ijs.0.066910-0.  ^ J. P. Euzéby. “Family Nitrobacteraceae”. List of Prokaryotic Names with Standing in Nomenclature. 2023年8月17日閲覧。 ^ Defeng Xing; Yi Zuo; Shaoan Cheng; John M. Regan; Bruce E. Logan (2008). “Electricity Generation by Rhodopseudomonas palustris DX-1”. Environ. Sci. Technol. 42 (11): 4146–51. Bibcode: 2008EnST...42.4146X. doi:10.1021/es800312v. PMID 18589979.  ^ Natasha DeLeon-Rodriguez, others (full list) (December 19, 2012). “Microbiome of the upper troposphere: Species composition and prevalence, effects of tropical storms, and atmospheric implications”. Proceedings of the National Academy of Sciences 110 (7): 2575–2580. doi:10.1073/pnas.1212089110. PMC 3574924. PMID 23359712. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3574924/.  ^ Hördt, Anton; López, Marina García; Meier-Kolthoff, Jan P.; Schleuning, Marcel; Weinhold, Lisa-Maria; Tindall, Brian J.; Gronow, Sabine; Kyrpides, Nikos C. et al. (7 April 2020). “Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria”. Frontiers in Microbiology 11: 468. doi:10.3389/fmicb.2020.00468. PMC 7179689. PMID 32373076. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7179689/.  J.P. Euzéby: List of Prokaryotic names with Standing in Nomenclature - Family Nitrobacteraceae - cict.fr Nitrobacteraceae - discoverlife.org Nitrobacteraceae, Taxonomic Serial No.: 56 - Integrated Taxonomic Information System Nitrobacteraceae - online-medical-dictionary.org Taxonomic Considerations of the Family Nitrobacteraceae Buchanan - sgmjournals.org