ex-48 - (jebene/kmeng): refactored merge and expand to fix segfualt bug
(jebene): modified consensus.py so that z-score calculation wasn't
finding population mean and std redundantly. it's MUCH faster now
EX-85 (jebene kmeng) Fixed merge merge_samples() method to handle
Mult_Alts.
EX-85 (jebene/cgates) fixed bug in merge so that Mult_Alts are handled
correctly.
(cgates): Adjust rollup_genes to match new Epee field names
(SNPEFF_TOP_EFFECT_IMPACT).
EX-87 (cgates): Adjusted VarScan to only mark JQ_HC_SOM_VS for actual
high-confidence variants
(cgates): Updated pydevproject settings
EX-64 (cgates): Minor fixes/refactors to correct VarScan HC somatic tagging
Merge branch 'develop' of github.com:umich-brcf-bioinf/ExomeSeqPipeline into develop
EX-64(cgates kmeng): Merging develop into simply_variant_callers.