GitHub PushEvent at 2014-01-28 18:55:02
Repository: AnalysisSuite
Actor: jefferis
Payload: {"shas":[["0da436ca4e3c19d1f39838271d389e53fe72acc4","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","ADD: CoreNeuronFromAmiraSkel() using igraph\n\n* this is functional but needs more testing","Gregory Jefferis",true],["b4146b6cf0aacc79e9feccce921ca28913e9254d","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Teach ParseAM3DToNeuron to use either method to parse am3d neuron","Gregory Jefferis",true],["32df63f49796a48293f128c67a28140edbf3b36d","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","new functions to test files for amiramesh / content","Gregory Jefferis",true],["5cfdb64ec84f9aa0f9a8db552038497eaac5879b","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","test functions to verify that amira neurons are still read correctly","Gregory Jefferis",true],["41c24ba02049659fd63601c9a307e8e93b5a5984","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","small fixes (inc docs/tests) for is.amiramesh and amiratype","Gregory Jefferis",true],["56549a9605b1f23a2cb8a72e6e080af226a81eb1","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Test as many amiramesh SkeltonGraph files as we can find on my machine!","Gregory Jefferis",true],["9c7973c0b987c8b7afc8f0f0668065db61083c51","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","be quiet when reading header in amiratype()","Gregory Jefferis",true],["38442753b803f6e3113ae34b195973a6703f6fae","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Improve RecalculateSWCData (which was unused to date)\n\n* now uses complete SegList information from SubTrees when available\n* can either return neuron or SWC dataframe","Gregory Jefferis",true],["faca9290abfc89a7ffbdad63e4b26348bc12463f","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Fix SWC Parents CoreNeuronFromAmiraSkel()\n\n* problem in calculating parents using dfs\n* much better to use newly fixed RecalculateSWCData()\n  so that SegList and SWC blocks are completely consistent","Gregory Jefferis",true],["81694f914b9b6241a5fe579c87901f69f464d66b","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Some tidying of tests of all SkeletonGraph neurons\n\n* now requires plyr (really just for progress bar)\n* currently get to 64% of neurons on my machine","Gregory Jefferis",true],["afefa905b3e4438e06211751eb726d5dcb025378","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","new as.directed.usingroot() FIXME improve name","Gregory Jefferis",true],["438e6fe5d0ba3cd142a7374b22bfe2df33f5a840","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Deprecate core ReadAmiramesh functions","Gregory Jefferis",true],["091ed536fdec6713092e80bd01198978a103fbff","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","test data for test.ReadAmiramesh","Gregory Jefferis",true],["22a9dd2665891af140039a9e2b7b293ec8ec9654","22dc20fe5311cf6e255110e55b9d9ae44de4b5a5@gmail.com","Merge branch 'feature/amira-igraph'\n\n* feature/amira-igraph:\n  new as.directed.usingroot() FIXME improve name\n  Some tidying of tests of all SkeletonGraph neurons\n  Fix SWC Parents CoreNeuronFromAmiraSkel()\n  Improve RecalculateSWCData (which was unused to date)\n  be quiet when reading header in amiratype()\n  Test as many amiramesh SkeltonGraph files as we can find on my machine!\n  small fixes (inc docs/tests) for is.amiramesh and amiratype\n  test functions to verify that amira neurons are still read correctly\n  new functions to test files for amiramesh / content\n  Teach ParseAM3DToNeuron to use either method to parse am3d neuron\n  ADD: CoreNeuronFromAmiraSkel() using igraph","Gregory Jefferis",true]],"size":14,"ref":"refs/heads/master","head":"22a9dd2665891af140039a9e2b7b293ec8ec9654"}