GitHub PushEvent at 2014-06-09 20:16:40
Repository: bioformats
Actor: melissalinkert
Payload: {"shas":[["ccc361986e9c126f6d2e4e5461c78bade49000c4","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Initial support for Zeiss .lms files\n\nFixes ticket #4150.","Melissa Linkert",true],["c72d668af39ac4be4cdb492fdc81c59bf7dada6c","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Initial support for Veeco AFM data\n\nFixes ticket #4220.","Melissa Linkert",true],["4504649e49d3d1004e939565fdfda83591a8566b","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Rename the Veeco reader to be in the correct component","Melissa Linkert",true],["9b1422da4ff5f676f4a61da7e26bf82977362158","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Rename ZeissLMSReader to be in the correct component","Melissa Linkert",true],["f1777838500f3c19a6fb364fee3e11dd351b3449","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Ignore namespaces when filling in an XMLAnnotation's Value\n\nThis prevents the xmlns on Value from being set to an empty string.","Melissa Linkert",true],["0a6b3c4e79ef9d5fd963d0e9f639ec433b339e7c","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Woolz: make sure the service is initialized when calling openBytes\n\nIf planes are being opened after initialization from a memo file, the service may not have been\nset up.  This attempts service initialization any time the service is null during an openBytes call.","Melissa Linkert",true],["3fcfb3cf8ae1e35b2a4960bd8f1d7e638ce3d963","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","MRC: fix handling of mode 16 data\n\nMode 16 denotes 8-bit RGB data, not 16-bit data.  See\nhttps://trello.com/c/guQdSW8V/235-follow-ups-with-joaquin","Melissa Linkert",true],["27f181879e0fa4584a1992b24fa12112662bd51e","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Remove JENKINS_JOB variable and point at the release components","Sebastien Besson",true],["22edc43eb7c247a5ca13fcb2c3338b1eb957cd22","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Add extlink for source directories and fix links across doc","Sebastien Besson",true],["bcec768d3d30aa9c6290a063e84d4f4f4b104f48","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Miscellaneous redirects","Sebastien Besson",true],["fe347711fcca4792e89e1c3d7c23d0dfa5e83632","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Redirect svn.openmicroscopy.org.uk links","Sebastien Besson",true],["0b5592e5353f2c2e478173bdc6fa2d5ebe740c14","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Redirect http://loci.wisc.edu/software links","Sebastien Besson",true],["22189bbb7fcf27435041583ff5b66041c2948684","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Deprecate download_components in favor of downloads extlink","Sebastien Besson",true],["a95eafde7fa591d451fe654b80209768659cd506","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Point at other artifacts  directly using the downloads extlink","Sebastien Besson",true],["a43d9f30b55372e13f7ec1c885cbf8b97ab78f22","7b18f1bb01f07f181e6b84c611565c93d1ed3932@gmail.com","Remove reference to bfcppdoxygen API\n\nIdeally we should be able to integrate Doxygen documentation generation\ndeployment as part of the release workflow.","Sebastien Besson",true],["236d4b6772cd8e70a4841e1410bdb27b5f2b815e","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Add some trace-level logging\n\nThis is mostly to assist in debugging issues with very large files.","Melissa Linkert",true],["6a04eb30ac307f8e2c232c7beed1134c7b8630a8","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","ImageInfo: add flag to enable trace-level logging","Melissa Linkert",true],["7a9ace3faca383dc8a154eb471d8fcfc6f5f3ca3","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Zeiss CZI: fix value of Rectangle.Y\n\nThe stored Y coordinate is the actual Y coordinate; it doesn't need to\nbe subtracted from the image height.\n\nFixes ticket #11367.","Melissa Linkert",true],["61f922f497e893e9f727598b3a21bf971d2a041d","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Zeiss CZI: fix copying of prestitched tiles\n\nThis uses the stored tile row/column instead of assuming that tiles were\nacquired in comb mode.  It also prevents tiles from being copied to the\nwrong row when the image width is greater than the sum of the tile widths.\n\nFixes #11784.","Melissa Linkert",true],["5875d38f2ec372016c46b4b976bca5f35da0076c","de4ab6e26db462b930510ba83e9f80b7db2bef88@glencoesoftware.com","Zeiss CZI: fix reading of RGB images\n\nThe channel count and interleaved values were previously set\nincorrectly; openBytes also did not account for the fact that RGB images\nare stored in BGR order.\n\nFixes #11233.","Melissa Linkert",true]],"size":51,"ref":"refs/heads/czi-tidying","head":"6fe1bdabc13bace8e3f8dcbfa5d532c6a591db4a"}