GitHub PullRequestReviewCommentEvent at 2014-06-12 15:13:10
Repository: scikit-bio
Actor: ebolyen
Payload: {"action":"created","comment":{"url":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/13706402","id":13706402,"diff_hunk":"@@ -1,33 +1,66 @@\n r\"\"\"\n-Performing Striped Smith Waterman Alignments (:mod:`skbio.core.ssw`)\n-====================================================================\n-.. currentmodule:: skbio.core.ssw\n+Sequence collections and alignments (:mod:`skbio.core.alignment`)\n+===========================================================================","path":"skbio/core/alignment/__init__.py","position":6,"original_position":6,"commit_id":"931686c2482e66c38d49017acfee66f15ee28de1","original_commit_id":"931686c2482e66c38d49017acfee66f15ee28de1","user":{"login":"ebolyen","id":3976804,"avatar_url":"https://avatars.githubusercontent.com/u/3976804?","gravatar_id":"33e6f018b7faea6c4822f0a5f1e1a2f8","url":"https://api.github.com/users/ebolyen","html_url":"https://github.com/ebolyen","followers_url":"https://api.github.com/users/ebolyen/followers","following_url":"https://api.github.com/users/ebolyen/following{/other_user}","gists_url":"https://api.github.com/users/ebolyen/gists{/gist_id}","starred_url":"https://api.github.com/users/ebolyen/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ebolyen/subscriptions","organizations_url":"https://api.github.com/users/ebolyen/orgs","repos_url":"https://api.github.com/users/ebolyen/repos","events_url":"https://api.github.com/users/ebolyen/events{/privacy}","received_events_url":"https://api.github.com/users/ebolyen/received_events","type":"User","site_admin":false},"body":"Isn't this too long? It builds, but I don't know if we have a fixed rule about max title length now or if we are still matching it like markdown.","created_at":"2014-06-12T15:13:10Z","updated_at":"2014-06-12T15:13:10Z","html_url":"https://github.com/biocore/scikit-bio/pull/430#discussion_r13706402","pull_request_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/430","_links":{"self":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/13706402"},"html":{"href":"https://github.com/biocore/scikit-bio/pull/430#discussion_r13706402"},"pull_request":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/430"}}},"pull_request":{"url":"https://api.github.com/repos/biocore/scikit-bio/pulls/430","id":17036338,"html_url":"https://github.com/biocore/scikit-bio/pull/430","diff_url":"https://github.com/biocore/scikit-bio/pull/430.diff","patch_url":"https://github.com/biocore/scikit-bio/pull/430.patch","issue_url":"https://api.github.com/repos/biocore/scikit-bio/issues/430","number":430,"state":"open","title":"create alignment submodule","user":{"login":"gregcaporaso","id":192372,"avatar_url":"https://avatars.githubusercontent.com/u/192372?","gravatar_id":"24f019bae9a9c4282123961b01c7f0d5","url":"https://api.github.com/users/gregcaporaso","html_url":"https://github.com/gregcaporaso","followers_url":"https://api.github.com/users/gregcaporaso/followers","following_url":"https://api.github.com/users/gregcaporaso/following{/other_user}","gists_url":"https://api.github.com/users/gregcaporaso/gists{/gist_id}","starred_url":"https://api.github.com/users/gregcaporaso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gregcaporaso/subscriptions","organizations_url":"https://api.github.com/users/gregcaporaso/orgs","repos_url":"https://api.github.com/users/gregcaporaso/repos","events_url":"https://api.github.com/users/gregcaporaso/events{/privacy}","received_events_url":"https://api.github.com/users/gregcaporaso/received_events","type":"User","site_admin":false},"body":"~~**NOT READY FOR MERGE**  Working on some doc issues, but I want travis to run the tests in the meantime.~~\r\n\r\nDoc issues sorted out, I think this should be ready to go, but we need to remember to test install/testing with setup.py before the release since I did have to make changes to setup.py. \r\n\r\nFixes #419.\r\n","created_at":"2014-06-12T03:45:58Z","updated_at":"2014-06-12T15:13:10Z","closed_at":null,"merged_at":null,"merge_commit_sha":"44ae138e4e7c3fbf044fbe26564d800157c5acdf","assignee":{"login":"ElBrogrammer","id":1847232,"avatar_url":"https://avatars.githubusercontent.com/u/1847232?","gravatar_id":"9e0f900bf3227c537736e8d56121fa89","url":"https://api.github.com/users/ElBrogrammer","html_url":"https://github.com/ElBrogrammer","followers_url":"https://api.github.com/users/ElBrogrammer/followers","following_url":"https://api.github.com/users/ElBrogrammer/following{/other_user}","gists_url":"https://api.github.com/users/ElBrogrammer/gists{/gist_id}","starred_url":"https://api.github.com/users/ElBrogrammer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ElBrogrammer/subscriptions","organizations_url":"https://api.github.com/users/ElBrogrammer/orgs","repos_url":"https://api.github.com/users/ElBrogrammer/repos","events_url":"https://api.github.com/users/ElBrogrammer/events{/privacy}","received_events_url":"https://api.github.com/users/ElBrogrammer/received_events","type":"User","site_admin":false},"milestone":{"url":"https://api.github.com/repos/biocore/scikit-bio/milestones/7","labels_url":"https://api.github.com/repos/biocore/scikit-bio/milestones/7/labels","id":682186,"number":7,"title":"0.1.2: minor release","description":"0.1.2 minor release will include:\r\n\r\n- website front page, sphinx docs under docs/ directory with support for multiple versions\r\n- additional distance-based statistics (`skbio.math.stats.distance` subpackage)\r\n- bug/doc fixes, etc. as time permits\r\n\r\nThis release should not introduce any backwards-incompatible changes to the public API.","creator":{"login":"ElBrogrammer","id":1847232,"avatar_url":"https://avatars.githubusercontent.com/u/1847232?","gravatar_id":"9e0f900bf3227c537736e8d56121fa89","url":"https://api.github.com/users/ElBrogrammer","html_url":"https://github.com/ElBrogrammer","followers_url":"https://api.github.com/users/ElBrogrammer/followers","following_url":"https://api.github.com/users/ElBrogrammer/following{/other_user}","gists_url":"https://api.github.com/users/ElBrogrammer/gists{/gist_id}","starred_url":"https://api.github.com/users/ElBrogrammer/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ElBrogrammer/subscriptions","organizations_url":"https://api.github.com/users/ElBrogrammer/orgs","repos_url":"https://api.github.com/users/ElBrogrammer/repos","events_url":"https://api.github.com/users/ElBrogrammer/events{/privacy}","received_events_url":"https://api.github.com/users/ElBrogrammer/received_events","type":"User","site_admin":false},"open_issues":14,"closed_issues":10,"state":"open","created_at":"2014-06-05T13:49:35Z","updated_at":"2014-06-12T13:26:23Z","due_on":"2014-06-12T07:00:00Z"},"commits_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/430/commits","review_comments_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/430/comments","review_comment_url":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/{number}","comments_url":"https://api.github.com/repos/biocore/scikit-bio/issues/430/comments","statuses_url":"https://api.github.com/repos/biocore/scikit-bio/statuses/931686c2482e66c38d49017acfee66f15ee28de1","head":{"label":"gregcaporaso:issue-419","ref":"issue-419","sha":"931686c2482e66c38d49017acfee66f15ee28de1","user":{"login":"gregcaporaso","id":192372,"avatar_url":"https://avatars.githubusercontent.com/u/192372?","gravatar_id":"24f019bae9a9c4282123961b01c7f0d5","url":"https://api.github.com/users/gregcaporaso","html_url":"https://github.com/gregcaporaso","followers_url":"https://api.github.com/users/gregcaporaso/followers","following_url":"https://api.github.com/users/gregcaporaso/following{/other_user}","gists_url":"https://api.github.com/users/gregcaporaso/gists{/gist_id}","starred_url":"https://api.github.com/users/gregcaporaso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gregcaporaso/subscriptions","organizations_url":"https://api.github.com/users/gregcaporaso/orgs","repos_url":"https://api.github.com/users/gregcaporaso/repos","events_url":"https://api.github.com/users/gregcaporaso/events{/privacy}","received_events_url":"https://api.github.com/users/gregcaporaso/received_events","type":"User","site_admin":false},"repo":{"id":15377899,"name":"bipy","full_name":"gregcaporaso/bipy","owner":{"login":"gregcaporaso","id":192372,"avatar_url":"https://avatars.githubusercontent.com/u/192372?","gravatar_id":"24f019bae9a9c4282123961b01c7f0d5","url":"https://api.github.com/users/gregcaporaso","html_url":"https://github.com/gregcaporaso","followers_url":"https://api.github.com/users/gregcaporaso/followers","following_url":"https://api.github.com/users/gregcaporaso/following{/other_user}","gists_url":"https://api.github.com/users/gregcaporaso/gists{/gist_id}","starred_url":"https://api.github.com/users/gregcaporaso/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/gregcaporaso/subscriptions","organizations_url":"https://api.github.com/users/gregcaporaso/orgs","repos_url":"https://api.github.com/users/gregcaporaso/repos","events_url":"https://api.github.com/users/gregcaporaso/events{/privacy}","received_events_url":"https://api.github.com/users/gregcaporaso/received_events","type":"User","site_admin":false},"private":false,"html_url":"https://github.com/gregcaporaso/bipy","description":"Tools for biological data analysis in python.","fork":true,"url":"https://api.github.com/repos/gregcaporaso/bipy","forks_url":"https://api.github.com/repos/gregcaporaso/bipy/forks","keys_url":"https://api.github.com/repos/gregcaporaso/bipy/keys{/key_id}","collaborators_url":"https://api.github.com/repos/gregcaporaso/bipy/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/gregcaporaso/bipy/teams","hooks_url":"https://api.github.com/repos/gregcaporaso/bipy/hooks","issue_events_url":"https://api.github.com/repos/gregcaporaso/bipy/issues/events{/number}","events_url":"https://api.github.com/repos/gregcaporaso/bipy/events","assignees_url":"https://api.github.com/repos/gregcaporaso/bipy/assignees{/user}","branches_url":"https://api.github.com/repos/gregcaporaso/bipy/branches{/branch}","tags_url":"https://api.github.com/repos/gregcaporaso/bipy/tags","blobs_url":"https://api.github.com/repos/gregcaporaso/bipy/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/gregcaporaso/bipy/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/gregcaporaso/bipy/git/refs{/sha}","trees_url":"https://api.github.com/repos/gregcaporaso/bipy/git/trees{/sha}","statuses_url":"https://api.github.com/repos/gregcaporaso/bipy/statuses/{sha}","languages_url":"https://api.github.com/repos/gregcaporaso/bipy/languages","stargazers_url":"https://api.github.com/repos/gregcaporaso/bipy/stargazers","contributors_url":"https://api.github.com/repos/gregcaporaso/bipy/contributors","subscribers_url":"https://api.github.com/repos/gregcaporaso/bipy/subscribers","subscription_url":"https://api.github.com/repos/gregcaporaso/bipy/subscription","commits_url":"https://api.github.com/repos/gregcaporaso/bipy/commits{/sha}","git_commits_url":"https://api.github.com/repos/gregcaporaso/bipy/git/commits{/sha}","comments_url":"https://api.github.com/repos/gregcaporaso/bipy/comments{/number}","issue_comment_url":"https://api.github.com/repos/gregcaporaso/bipy/issues/comments/{number}","contents_url":"https://api.github.com/repos/gregcaporaso/bipy/contents/{+path}","compare_url":"https://api.github.com/repos/gregcaporaso/bipy/compare/{base}...{head}","merges_url":"https://api.github.com/repos/gregcaporaso/bipy/merges","archive_url":"https://api.github.com/repos/gregcaporaso/bipy/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/gregcaporaso/bipy/downloads","issues_url":"https://api.github.com/repos/gregcaporaso/bipy/issues{/number}","pulls_url":"https://api.github.com/repos/gregcaporaso/bipy/pulls{/number}","milestones_url":"https://api.github.com/repos/gregcaporaso/bipy/milestones{/number}","notifications_url":"https://api.github.com/repos/gregcaporaso/bipy/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/gregcaporaso/bipy/labels{/name}","releases_url":"https://api.github.com/repos/gregcaporaso/bipy/releases{/id}","created_at":"2013-12-22T15:56:50Z","updated_at":"2014-06-12T14:39:51Z","pushed_at":"2014-06-12T14:39:15Z","git_url":"git://github.com/gregcaporaso/bipy.git","ssh_url":"git@github.com:gregcaporaso/bipy.git","clone_url":"https://github.com/gregcaporaso/bipy.git","svn_url":"https://github.com/gregcaporaso/bipy","homepage":"https://github.com/biocore","size":7764,"stargazers_count":1,"watchers_count":1,"language":"Python","has_issues":false,"has_downloads":true,"has_wiki":true,"forks_count":0,"mirror_url":null,"open_issues_count":0,"forks":0,"open_issues":0,"watchers":1,"default_branch":"master"}},"base":{"label":"biocore:master","ref":"master","sha":"4cbd7bc617e56e4614a285eb11159e30bfcf9d89","user":{"login":"biocore","id":6241857,"avatar_url":"https://avatars.githubusercontent.com/u/6241857?","gravatar_id":null,"url":"https://api.github.com/users/biocore","html_url":"https://github.com/biocore","followers_url":"https://api.github.com/users/biocore/followers","following_url":"https://api.github.com/users/biocore/following{/other_user}","gists_url":"https://api.github.com/users/biocore/gists{/gist_id}","starred_url":"https://api.github.com/users/biocore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biocore/subscriptions","organizations_url":"https://api.github.com/users/biocore/orgs","repos_url":"https://api.github.com/users/biocore/repos","events_url":"https://api.github.com/users/biocore/events{/privacy}","received_events_url":"https://api.github.com/users/biocore/received_events","type":"Organization","site_admin":false},"repo":{"id":15168264,"name":"scikit-bio","full_name":"biocore/scikit-bio","owner":{"login":"biocore","id":6241857,"avatar_url":"https://avatars.githubusercontent.com/u/6241857?","gravatar_id":null,"url":"https://api.github.com/users/biocore","html_url":"https://github.com/biocore","followers_url":"https://api.github.com/users/biocore/followers","following_url":"https://api.github.com/users/biocore/following{/other_user}","gists_url":"https://api.github.com/users/biocore/gists{/gist_id}","starred_url":"https://api.github.com/users/biocore/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/biocore/subscriptions","organizations_url":"https://api.github.com/users/biocore/orgs","repos_url":"https://api.github.com/users/biocore/repos","events_url":"https://api.github.com/users/biocore/events{/privacy}","received_events_url":"https://api.github.com/users/biocore/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/biocore/scikit-bio","description":"Core objects, functions and statistics for working with biological data in Python.","fork":false,"url":"https://api.github.com/repos/biocore/scikit-bio","forks_url":"https://api.github.com/repos/biocore/scikit-bio/forks","keys_url":"https://api.github.com/repos/biocore/scikit-bio/keys{/key_id}","collaborators_url":"https://api.github.com/repos/biocore/scikit-bio/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/biocore/scikit-bio/teams","hooks_url":"https://api.github.com/repos/biocore/scikit-bio/hooks","issue_events_url":"https://api.github.com/repos/biocore/scikit-bio/issues/events{/number}","events_url":"https://api.github.com/repos/biocore/scikit-bio/events","assignees_url":"https://api.github.com/repos/biocore/scikit-bio/assignees{/user}","branches_url":"https://api.github.com/repos/biocore/scikit-bio/branches{/branch}","tags_url":"https://api.github.com/repos/biocore/scikit-bio/tags","blobs_url":"https://api.github.com/repos/biocore/scikit-bio/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/biocore/scikit-bio/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/biocore/scikit-bio/git/refs{/sha}","trees_url":"https://api.github.com/repos/biocore/scikit-bio/git/trees{/sha}","statuses_url":"https://api.github.com/repos/biocore/scikit-bio/statuses/{sha}","languages_url":"https://api.github.com/repos/biocore/scikit-bio/languages","stargazers_url":"https://api.github.com/repos/biocore/scikit-bio/stargazers","contributors_url":"https://api.github.com/repos/biocore/scikit-bio/contributors","subscribers_url":"https://api.github.com/repos/biocore/scikit-bio/subscribers","subscription_url":"https://api.github.com/repos/biocore/scikit-bio/subscription","commits_url":"https://api.github.com/repos/biocore/scikit-bio/commits{/sha}","git_commits_url":"https://api.github.com/repos/biocore/scikit-bio/git/commits{/sha}","comments_url":"https://api.github.com/repos/biocore/scikit-bio/comments{/number}","issue_comment_url":"https://api.github.com/repos/biocore/scikit-bio/issues/comments/{number}","contents_url":"https://api.github.com/repos/biocore/scikit-bio/contents/{+path}","compare_url":"https://api.github.com/repos/biocore/scikit-bio/compare/{base}...{head}","merges_url":"https://api.github.com/repos/biocore/scikit-bio/merges","archive_url":"https://api.github.com/repos/biocore/scikit-bio/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/biocore/scikit-bio/downloads","issues_url":"https://api.github.com/repos/biocore/scikit-bio/issues{/number}","pulls_url":"https://api.github.com/repos/biocore/scikit-bio/pulls{/number}","milestones_url":"https://api.github.com/repos/biocore/scikit-bio/milestones{/number}","notifications_url":"https://api.github.com/repos/biocore/scikit-bio/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/biocore/scikit-bio/labels{/name}","releases_url":"https://api.github.com/repos/biocore/scikit-bio/releases{/id}","created_at":"2013-12-13T16:24:41Z","updated_at":"2014-06-12T13:09:03Z","pushed_at":"2014-06-12T13:09:06Z","git_url":"git://github.com/biocore/scikit-bio.git","ssh_url":"git@github.com:biocore/scikit-bio.git","clone_url":"https://github.com/biocore/scikit-bio.git","svn_url":"https://github.com/biocore/scikit-bio","homepage":"http://scikit-bio.org","size":23344,"stargazers_count":37,"watchers_count":37,"language":"Python","has_issues":true,"has_downloads":true,"has_wiki":true,"forks_count":23,"mirror_url":null,"open_issues_count":71,"forks":23,"open_issues":71,"watchers":37,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/430"},"html":{"href":"https://github.com/biocore/scikit-bio/pull/430"},"issue":{"href":"https://api.github.com/repos/biocore/scikit-bio/issues/430"},"comments":{"href":"https://api.github.com/repos/biocore/scikit-bio/issues/430/comments"},"review_comments":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/430/comments"},"review_comment":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/comments/{number}"},"commits":{"href":"https://api.github.com/repos/biocore/scikit-bio/pulls/430/commits"},"statuses":{"href":"https://api.github.com/repos/biocore/scikit-bio/statuses/931686c2482e66c38d49017acfee66f15ee28de1"}}}}