GitHub PullRequestReviewCommentEvent at 2014-11-16 08:18:54
Repository: cmssw
Actor: StoyanStoynev
Payload: {"action":"created","comment":{"url":"https://api.github.com/repos/cms-sw/cmssw/pulls/comments/20407825","id":20407825,"diff_hunk":"@@ -284,6 +372,196 @@ void TemplatedSecondaryVertexProducer<IPTI,VTX>::produce(edm::Event &event,\n \t\t/* nothing */;\n \t}\n \n+\t// ------------------------------------ SV clustering START --------------------------------------------\n+\tstd::vector<std::vector<int> > clusteredSVs(trackIPTagInfos->size(),std::vector<int>());\n+\tif( useExternalSV && useSVClustering && trackIPTagInfos->size()>0 )\n+\t{\n+\t  // vector of constituents for reclustering jets and \"ghost\" SVs\n+\t  std::vector<fastjet::PseudoJet> fjInputs;\n+\t  // loop over all input jets and collect all their constituents\n+\t  if( useFatJets )\n+\t  {\n+\t    for(edm::View<reco::Jet>::const_iterator it = fatJetsHandle->begin(); it != fatJetsHandle->end(); ++it)\n+\t    {\n+\t      std::vector<edm::Ptr<reco::Candidate> > constituents = it->getJetConstituents();\n+\t      std::vector<edm::Ptr<reco::Candidate> >::const_iterator m;\n+\t      for( m = constituents.begin(); m != constituents.end(); ++m )\n+\t      {\n+\t\t reco::CandidatePtr constit = *m;\n+\t\t if(constit->pt() == 0)\n+\t\t {\n+\t\t   edm::LogWarning(\"NullTransverseMomentum\") << \"dropping input candidate with pt=0\";\n+\t\t   continue;\n+\t\t }\n+\t\t fjInputs.push_back(fastjet::PseudoJet(constit->px(),constit->py(),constit->pz(),constit->energy()));\n+\t      }\n+\t    }\n+\t  }\n+\t  else\n+\t  {\n+\t    for(typename std::vector<IPTI>::const_iterator it = trackIPTagInfos->begin(); it != trackIPTagInfos->end(); ++it)\n+\t    {\n+\t      std::vector<edm::Ptr<reco::Candidate> > constituents = it->jet()->getJetConstituents();\n+\t      std::vector<edm::Ptr<reco::Candidate> >::const_iterator m;\n+\t      for( m = constituents.begin(); m != constituents.end(); ++m )\n+\t      {\n+\t\t reco::CandidatePtr constit = *m;\n+\t\t if(constit->pt() == 0)\n+\t\t {\n+\t\t   edm::LogWarning(\"NullTransverseMomentum\") << \"dropping input candidate with pt=0\";\n+\t\t   continue;\n+\t\t }\n+\t\t fjInputs.push_back(fastjet::PseudoJet(constit->px(),constit->py(),constit->pz(),constit->energy()));\n+\t      }\n+\t    }\n+\t  }\n+\t  // insert \"ghost\" SVs in the vector of constituents\n+\t  for(typename edm::View<VTX>::const_iterator it = extSecVertex->begin(); it != extSecVertex->end(); ++it)\n+\t  {\n+\t    const reco::Vertex &pv = *(trackIPTagInfos->front().primaryVertex());\n+\t    GlobalVector dir = flightDirection(pv, *it);\n+\t    dir = dir.unit();\n+\t    fastjet::PseudoJet p(dir.x(),dir.y(),dir.z(),dir.mag()); // using SV flight direction so treating SV as massless\n+\t    if( useSVMomentum )\n+\t      p = fastjet::PseudoJet(it->p4().px(),it->p4().py(),it->p4().pz(),it->p4().energy());\n+\t    p*=ghostRescaling; // rescale SV direction/momentum\n+\t    p.set_user_info(new VertexInfo( it - extSecVertex->begin() ));\n+\t    fjInputs.push_back(p);\n+\t  }\n+\t  \n+\t  // define jet clustering sequence\n+\t  fjClusterSeq = ClusterSequencePtr( new fastjet::ClusterSequence( fjInputs, *fjJetDefinition ) );\n+\t  // recluster jet constituents and inserted \"ghosts\"\n+\t  std::vector<fastjet::PseudoJet> inclusiveJets = fastjet::sorted_by_pt( fjClusterSeq->inclusive_jets(jetPtMin) );\n+\t  \n+\t  if( useFatJets )\n+\t  {\n+\t    if( inclusiveJets.size() < fatJetsHandle->size() )\n+             edm::LogError(\"TooFewReclusteredJets\") << \"There are fewer reclustered (\" << inclusiveJets.size() << \") than original fat jets (\" << fatJetsHandle->size() << \"). Please check that the jet algorithm and jet size match those used for the original jet collection.\";\n+\n+\t    // match reclustered and original fat jets\n+\t    std::vector<int> reclusteredIndices;\n+\t    matchReclusteredJets<edm::View<reco::Jet> >(fatJetsHandle,inclusiveJets,reclusteredIndices,\"fat\");\n+\n+\t    // match groomed and original fat jets\n+\t    std::vector<int> groomedIndices;\n+\t    matchGroomedJets(fatJetsHandle,groomedFatJetsHandle,groomedIndices);\n+\n+\t    // match subjets and original fat jets\n+\t    std::vector<std::vector<int> > subjetIndices;\n+\t    matchSubjets(groomedIndices,groomedFatJetsHandle,trackIPTagInfos,subjetIndices);\n+\t\n+\t    // collect clustered SVs\n+\t    for(size_t i=0; i<fatJetsHandle->size(); ++i)\n+\t    {\n+\t      if( reclusteredIndices.at(i) < 0 ) continue; // continue if matching reclustered to original jets failed\n+\t\n+\t      if( fatJetsHandle->at(i).pt() == 0 ) // continue if the original jet has Pt=0\n+\t      {\n+\t        edm::LogWarning(\"NullTransverseMomentum\") << \"The original fat jet \" << i << \" has Pt=0. This is not expected so the jet will be skipped.\";\n+\t        continue;\n+\t      }\n+\t\n+\t      if( subjetIndices.at(i).size()==0 ) continue; // continue if the original jet does not have subjets assigned\n+\t\t\n+\t      // since the \"ghosts\" are extremely soft, the configuration and ordering of the reclustered and original fat jets should in principle stay the same\n+\t      if( ( fabs( inclusiveJets.at(reclusteredIndices.at(i)).pt() - fatJetsHandle->at(i).pt() ) / fatJetsHandle->at(i).pt() ) > relPtTolerance )","path":"RecoBTag/SecondaryVertex/plugins/TemplatedSecondaryVertexProducer.cc","position":225,"original_position":225,"commit_id":"2869fe1b8c713b7ab8ee99698dd03493af7d980e","original_commit_id":"2869fe1b8c713b7ab8ee99698dd03493af7d980e","user":{"login":"StoyanStoynev","id":5399712,"avatar_url":"https://avatars.githubusercontent.com/u/5399712?v=3","gravatar_id":"","url":"https://api.github.com/users/StoyanStoynev","html_url":"https://github.com/StoyanStoynev","followers_url":"https://api.github.com/users/StoyanStoynev/followers","following_url":"https://api.github.com/users/StoyanStoynev/following{/other_user}","gists_url":"https://api.github.com/users/StoyanStoynev/gists{/gist_id}","starred_url":"https://api.github.com/users/StoyanStoynev/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/StoyanStoynev/subscriptions","organizations_url":"https://api.github.com/users/StoyanStoynev/orgs","repos_url":"https://api.github.com/users/StoyanStoynev/repos","events_url":"https://api.github.com/users/StoyanStoynev/events{/privacy}","received_events_url":"https://api.github.com/users/StoyanStoynev/received_events","type":"User","site_admin":false},"body":"Concerning fabs:\r\nThere is a general recommendation to use std::abs() throughout CMSSW. That way we are consistent and have unified usage for all cases. Here is a link I find generally useful:  http://stackoverflow.com/questions/21392627/abs-vs-stdabs-what-does-the-reference-say","created_at":"2014-11-16T08:18:54Z","updated_at":"2014-11-16T08:18:54Z","html_url":"https://github.com/cms-sw/cmssw/pull/6417#discussion_r20407825","pull_request_url":"https://api.github.com/repos/cms-sw/cmssw/pulls/6417","_links":{"self":{"href":"https://api.github.com/repos/cms-sw/cmssw/pulls/comments/20407825"},"html":{"href":"https://github.com/cms-sw/cmssw/pull/6417#discussion_r20407825"},"pull_request":{"href":"https://api.github.com/repos/cms-sw/cmssw/pulls/6417"}}},"pull_request":{"url":"https://api.github.com/repos/cms-sw/cmssw/pulls/6417","id":24480988,"html_url":"https://github.com/cms-sw/cmssw/pull/6417","diff_url":"https://github.com/cms-sw/cmssw/pull/6417.diff","patch_url":"https://github.com/cms-sw/cmssw/pull/6417.patch","issue_url":"https://api.github.com/repos/cms-sw/cmssw/issues/6417","number":6417,"state":"open","locked":false,"title":"Secondary vertex clustering + explicit jet-track association","user":{"login":"ferencek","id":4885289,"avatar_url":"https://avatars.githubusercontent.com/u/4885289?v=3","gravatar_id":"","url":"https://api.github.com/users/ferencek","html_url":"https://github.com/ferencek","followers_url":"https://api.github.com/users/ferencek/followers","following_url":"https://api.github.com/users/ferencek/following{/other_user}","gists_url":"https://api.github.com/users/ferencek/gists{/gist_id}","starred_url":"https://api.github.com/users/ferencek/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ferencek/subscriptions","organizations_url":"https://api.github.com/users/ferencek/orgs","repos_url":"https://api.github.com/users/ferencek/repos","events_url":"https://api.github.com/users/ferencek/events{/privacy}","received_events_url":"https://api.github.com/users/ferencek/received_events","type":"User","site_admin":false},"body":"This PR adds the SV clustering capability to the SVTagInfo producer and adds the explicit jet-track association to the candidate-based IPTagInfo producer.\r\n\r\nAll changes completely transparent to the standard reconstruction.\r\n\r\n**Update:** Rebased to CMSSW_7_3_X_2014-11-15-0200 and added support for SV clustering, jet flavor for subjets, and explicit jet-track association in PAT","created_at":"2014-11-15T00:35:59Z","updated_at":"2014-11-16T08:18:54Z","closed_at":null,"merged_at":null,"merge_commit_sha":"86aafe0926a11f3d9e2c563ca03ae958e8ae8de5","assignee":null,"milestone":{"url":"https://api.github.com/repos/cms-sw/cmssw/milestones/49","labels_url":"https://api.github.com/repos/cms-sw/cmssw/milestones/49/labels","id":791225,"number":49,"title":"Next 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