GitHub PushEvent at 2014-02-03 12:59:09
Repository: scilifelab
Actor: mariogiov
Payload: {"shas":[["b30213f9409d0dbf1ceb173d0b0df806f8015876","b0c58402f0a4ec21157ee16bab99b07de25fc3d2@gmail.com","Add file demultiplex_multiple_index_runs","vezzi",false],["420d53384e8456c9da86ed1a69b75cfe035eb584","b0c58402f0a4ec21157ee16bab99b07de25fc3d2@gmail.com","demultiplex_multiple_index_runs.py script to run demultiplexing with\nindexes of different length","vezzi",false],["29f69c50eb308ccbfce112ad86d620a7a6ff080d","b0c58402f0a4ec21157ee16bab99b07de25fc3d2@gmail.com","more changes to demultiplex_multiple_index_runs\n\t- added option to keep original index (needed for molecular tagging)\n\t- added function for fastq_utils to return number of bases with quality\n>Q30\n\t- output almost all the information needed to mimic\nDemultiplex_stats.htm","vezzi",false],["0c06f46e5e4d73eb22cdaf1bd71f05bcf69b4196","b0c58402f0a4ec21157ee16bab99b07de25fc3d2@gmail.com","fastq_utils.py now uses streams in place of files in order to read and\nwirte in a more efficent way\n\nFix problems in reported statistics\n\nThis is a working version","vezzi",false],["04e4bc56b204229b6701e752930e05d43da6a7c7","b0c58402f0a4ec21157ee16bab99b07de25fc3d2@gmail.com","Added funcitonality to demultiplex only specified indexes:\n -it overwrites existing Unmultiplexed and Ambiguous folders","vezzi",false],["99719c81fc960ffa6b4c902a935e06fbbc1d287c","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","version.py... something.","Mario Giovacchini",false],["5a71eaa628213e530c3392746cf63577def974ac","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Pull index from read 2 (of 3)","Mario Giovacchini",false],["ceb2fd48f222640591b563cc1319d83c40a6f480","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Start rewrite of haloplex demultiplexer","Mario Giovacchini",false],["d0f3815de2bfcd13a30605e2d96013da5f6e9f9c","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Add initial index parsing, comparison against supplied indexes.","Mario Giovacchini",false],["0975b3c8a823cacd62954996807719333615bc84","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Initial parsing / writing to files","Mario Giovacchini",false],["eee70dc12ce8e2c5dd6a1a18bdeac4cee28af83b","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Fix some things / add complicated argument parsing that doesn't really work right","Mario Giovacchini",false],["d6b6244272d83a0085b01e427167798a043972e0","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Parsing by index length and manually specified files complete.","Mario Giovacchini",false],["3cc3df559dbb3877a4377f729984a3aeca904925","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Added FastQParser code to the module for local testing (don't need to load scilifelab modules)","Mario Giovacchini",false],["33a2126df43a5126c53ab2edec435ef6ee881312","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Added some TODOs","Mario Giovacchini",false],["5b157715150cac0d14143bb66545478891b33a25","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Various refactoring/improvements, added index file parsing / matching","Mario Giovacchini",false],["560fd4db647e005a2312b87402e76f868dc39c54","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Added a progress bar. Neat!","Mario Giovacchini",false],["4b7df27cc32a1453a12dcd668b187f193be14916","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","More output to keep the user apprised of what's happenin'","Mario Giovacchini",false],["d9346f7a9d1191cb2eddf91c0d0aa152c7d84354","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Improved status output for large files","Mario Giovacchini",false],["dc1ee9ed762be28f84697a1c9478fb3850452433","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Added index frequency counter","Mario Giovacchini",false],["2158ce2461de1fcb31a9e601d8079bcb70602096","addb47291ee169f330801ce73520b96f2eaf20ea@scilifelab.se","Remove unused functions, add subsampling for index frequency tally","Mario Giovacchini",false]],"size":43,"ref":"refs/heads/master","head":"7dd9b545281d1c87cdf0e2e16fbe10f644988750"}