modified to use bipy.core.sequence.DNA
Merge pull request #1420 from gregcaporaso/remove-protein

Remove protein
modified to use bipy.core.sequence.DNA
Merge branch 'master' of github.com:qiime/qiime into remove-cogent-DNA

Conflicts:
	qiime/pycogent_backports/blat.py
Modified check_id_map.py to use IUPAC characters from bipy, issue #1421
modified to use bipy.core.sequence.DNA
modified to use bipy.core.sequence.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
removed dep on and refs to cogent.DNA
changing libraries from cogent to unittest
changing assertEqualItems -> assert_almost_equal
changing self.assert_almost_equal -> assert_almost_equal
Fixing tests for align_seqs
Typo

I think the sentence makes more sense with "if" instead of "in".