Merge branch 'master' of https://github.com/sharker81/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Modification on extracting wall graph information for Bree
modification for bree
Merge branch 'master' of https://github.com/sharker81/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Merge branch 'master' of https://github.com/sharker81/conley-morse-database into BooleanSwitchingAnnotations

# By Shaun Harker
# Via Shaun Harker
* 'master' of https://github.com/sharker81/conley-morse-database:
  removed a breaking line of debug code
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
Fix the output of the inequalities for a given parameter
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations
fixed the argument to read the network file for extracting the variables.
Add code to generate SQL database for a given model and many permutations
	modified:   extras/BooleanSwitchingExtractMorseSet/main.cpp
	modified:   extras/BooleanSwitchingExtractMorseSet/makefile
	modified:   extras/BooleanSwitchingZookeeper/MAKESQLZOO
	modified:   extras/BooleanSwitchingZookeeper/MakeWebpage/QueryDatabase/template/indexSQL.html
	modified:   extras/BooleanSwitchingZookeeper/MakeWebpage/createListAllDatabases.sh
	modified:   extras/BooleanSwitchingZookeeper/makeDatabaseZooSQL/makefile
	examples/BooleanSwitching/KonstantinCases/
	examples/BooleanSwitching/doall.sh
	extras/BooleanSwitchingZookeeper/doall.sh
Merge branch 'BooleanSwitchingAnnotations' of https://github.com/goullet/conley-morse-database into BooleanSwitchingAnnotations