[BAM]Fix: Fixed potential deadlock in realigner
[BAM]Fix: Removed exterior bucle in aligner to avoid deadlock
[BAM]Fix: Minimum required threads set to 3 to avoid deadlock
Merge branch 'realigner' of https://github.com/raulmorenogaldon/hpg-aligner into realigner

Conflicts:
	src/tools/bam/aligner/alig.c
[BAM]Fix: Bugfixing
[BAM]Implement: Wandering framework implementation progress
[BAM]Implement: BAM framework wandering implementation progress
[BAM]Implement: Progress in BAM wander implementation
[BAM]Implement: Wanderer implementation progress
[BAM]Implement: Wanderer progress
[BAM]Implement: Wanderer implementation progress
[BAM]Implement: Framework reestructuration progress
[BAM]Implement: Framework reestructuration progress
[BAM]Implement: Framework reestructuration progress
[BAM]Implement: Framework reestructuration done
[BAM]Implement: Added genome reference handle to wanderer
[BAM]Implement: Added lock for wanderer reference field
[BAM]Fix: alig.c, fixed potential pointer corruption in multithreading mode
[BAM]Fix: Fixed wrong lock set in wanderer.c
[BAM]Implement: Adapted realigner to wanderer framework