GitHub PushEvent at 2014-05-09 11:28:12
Repository: seq_tools
Actor: adarmitage
Payload: {"shas":[["79e6aa25f719dfd832cdf92066d7ad380ae58f66","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","changed assembly_pipe and submit_all to now perform unzipping in submit_all on the head node rather than in the SGE.","adarmitage",true],["bdef661e1059a0c35ffdc3e80aa50364abedf803","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","corrected naming of R reads in submit_all.sh","adarmitage",true],["ab759ed0c88ca4174070cac6e4363845909fca49","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","modified to alleviate potential problem using a variable named R_PATH","adarmitage",true],["b067c2b46025ac9d252a0ac11630d1a77792b3f1","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","reordered file","adarmitage",true],["64f06b5301fce47c3559524421de53ef3a16afce","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["3256bd259e03a3f75f94ce436d13a0aa6e8655f7","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["77e976482b55a54f308c6c5815268d3b56f86d19","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["3e2a1f45dce3c0d95ec7a9238b44ae606311239a","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["e62e1317880bf50e18cd4caa801bdab0b9940e6a","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["b499c5d09bb45e6fbcc3846ffbc1334174b0f5f6","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["617dcfb59a2c85c3c80f6ebc6fa37e711bbf8461","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["1fbb7c2b2725e4106f1871a287c00f46d6c702b6","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["b194637a871e109a05707da6698a795743f47081","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["a4d64c6d8e03d25993850108f4635f5bb88a1ff9","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["e3b85fc53dd1908667efde0842e9dc4423f1c900","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["4c53644874482328f5461ebaa509dba84ebb4e53","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","continued problem with R-read","adarmitage",true],["f44919bbdcbe520af7ba6e5f4bf0daac975b0b30","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","changed instances of F_READ to F_File to make more readable","adarmitage",true],["5c636ea3eee54ee0e4d6afb4ebc535223fb3fe58","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","renamed assembly_name to make outfiles more logical","adarmitage",true],["348eaffcae828575add416d04d0c6fd482b4f343","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","hardcoded path to flash as the program isnt in the master directory","adarmitage",true],["31ec3ac678f0e797b4fbefd9bc63f5bbb39adb9c","f0e94765feb5d072c122c73c2d4dbda9561c19d4@EMR.ac.uk","F_IN and R_IN now contain full file paths, to remove problem with working from tempory directories. Now collects information for STRAIN, ORGANISM etc. by counting levels from the end of directory tree using the rev function","adarmitage",true]],"size":35,"ref":"refs/heads/master","head":"77454ca2708651e476a430fd9999a770155263ea"}