GitHub PushEvent at 2014-11-21 19:11:38
Repository: OpenMS
Actor: timosachsenberg
Payload: {"shas":[["a3b20784665047a3db684a9915953d397ee15ea3","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'fix-pepxml-load' into FFId","Hendrik Weisser",true],["fd9c99bf8a6679795a03eb9e75b10e9791eb1a8b","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'FFId' of https://github.com/hendrikweisser/OpenMS into FFId","Hendrik Weisser",true],["2c164ca7b9aa3e02d6f044eec7c267ab1a69b270","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[PARAM] added flag 'all_features' to FeatureFinderIdentification (return all features found by OpenSWATH per peptide ID, instead of best one only)","Hendrik Weisser",true],["b445e13ebc4a84811a10d21fa3718e24debb3f96","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'develop' of https://github.com/OpenMS/OpenMS into FFId","Hendrik Weisser",true],["5af924407f57190da4d3ecc754d72843bee78ce0","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FEATURE,PARAM] reworked parameter handling, added internal feature detection (not yet finished)","Hendrik Weisser",true],["bb05752dc4e32ddfb5e7be54ce1766bb634a57f8","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FEATURE] more work on feature detection (adding meta data to features: m/z, charge, peptide IDs)","Hendrik Weisser",true],["a7822c6fa82ac89700f589be3979664726b4f54b","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX] various fixes to get feature (elution peak) detection working","Hendrik Weisser",true],["630bad908f0cb619749d7e155aa96f487045904e","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX] write original intensities instead of scaled ones","Hendrik Weisser",true],["520e55c905506e52b6f544cb5da106f86cc90ea3","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'develop' of https://github.com/OpenMS/OpenMS into FFId","Hendrik Weisser",true],["e4220897b1a51d124dcc7145faa8105eccb954c9","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX] adapted to change in AASequence class","Hendrik Weisser",true],["4277bc3afe371e039bad1f4910450b48ed59ab07","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX] work-around for OpenSWATH: include all protein accessions (not just one) of quantified peptides in output","Hendrik Weisser",true],["e372530bbf1a350ee1c85f1905e4e5440ce70c3b","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[PARAM,DOC] changed some parameter defaults and improved parameter documentation for FeatureFinderIdentification","Hendrik Weisser",true],["f530d1b00ba692bfab684a5a9386492811a768a5","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'develop' into FFId\n\nConflicts:\n\tsrc/topp/FeatureFinderIdentification.cpp","Hendrik Weisser",true],["26f6d3b9efe113d7547715d8c846fcd0c9969bd2","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[PARAM,DOC] added option to define max. gap length for feature detection; added comments to functions","Hendrik Weisser",true],["9a8f00ebf63f6331c29925e4b6fd963e9f6b4e0c","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[PARAM,FEATURE] added option to include zero-intensity points to constrain the model fitting","Hendrik Weisser",true],["452057bd32b712f6c508cfc126a1b317b524335d","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'develop' of https://github.com/OpenMS/OpenMS into FFId","Hendrik Weisser",true],["08a709c8f4fb88f7e9e42e5885e75e22db73d86b","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","Merge branch 'develop' of https://github.com/OpenMS/OpenMS into FFId","Hendrik Weisser",true],["68d2fd59473a3fcd51d7639e710b55b366c750ee","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[PARAM] changed default value for 'add_zeros' parameter (decreasing its influence)","Hendrik Weisser",true],["09ebbbbeea7741e76870c672902bbe7892e86433","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX,PARAM] use 'max_gap' parameter for feature detection; removed unneeded parameter 'fraction' of 'findNextExtremum_'","Hendrik Weisser",true],["c909ea686ef443768942d7d2ca566121cee22ae4","363d7e98008f88e1fbe072918b47223f9ad8b8e2@sanger.ac.uk","[FIX,LOG] fixed bug in 'filtered' feature detection (selection of matching points); added debug output; cosmetic changes","Hendrik Weisser",true]],"size":65,"ref":"refs/heads/develop","head":"39dfb6c49a140d84521880c2162596d0aa2316c4"}