GitHub PullRequestReviewCommentEvent at 2014-09-16 14:16:15
Repository: guacamole
Actor: ryan-williams
Payload: {"action":"created","comment":{"url":"https://api.github.com/repos/hammerlab/guacamole/pulls/comments/17603169","id":17603169,"diff_hunk":"@@ -99,17 +97,17 @@ object SomaticLogOddsVariantCaller extends Command with Serializable with Loggin\n         snvCorrelationPercent,\n         minNormalReadDepth,\n         maxNormalAlternateReadDepth,","path":"src/main/scala/org/bdgenomics/guacamole/callers/SomaticLogOddsVariantCaller.scala","position":79,"original_position":79,"commit_id":"f660284254ad32151083096d849c21473acc6cea","original_commit_id":"f660284254ad32151083096d849c21473acc6cea","user":{"login":"ryan-williams","id":465045,"avatar_url":"https://avatars.githubusercontent.com/u/465045?v=2","gravatar_id":"e26c2679c3679018dd705d613537f91c","url":"https://api.github.com/users/ryan-williams","html_url":"https://github.com/ryan-williams","followers_url":"https://api.github.com/users/ryan-williams/followers","following_url":"https://api.github.com/users/ryan-williams/following{/other_user}","gists_url":"https://api.github.com/users/ryan-williams/gists{/gist_id}","starred_url":"https://api.github.com/users/ryan-williams/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ryan-williams/subscriptions","organizations_url":"https://api.github.com/users/ryan-williams/orgs","repos_url":"https://api.github.com/users/ryan-williams/repos","events_url":"https://api.github.com/users/ryan-williams/events{/privacy}","received_events_url":"https://api.github.com/users/ryan-williams/received_events","type":"User","site_admin":false},"body":"\"`NormalAlternate`\" in a name is confusing to me here; is that the right name for what it is describing?","created_at":"2014-09-16T14:16:15Z","updated_at":"2014-09-16T14:16:15Z","html_url":"https://github.com/hammerlab/guacamole/pull/163#discussion_r17603169","pull_request_url":"https://api.github.com/repos/hammerlab/guacamole/pulls/163","_links":{"self":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/comments/17603169"},"html":{"href":"https://github.com/hammerlab/guacamole/pull/163#discussion_r17603169"},"pull_request":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/163"}}},"pull_request":{"url":"https://api.github.com/repos/hammerlab/guacamole/pulls/163","id":20895288,"html_url":"https://github.com/hammerlab/guacamole/pull/163","diff_url":"https://github.com/hammerlab/guacamole/pull/163.diff","patch_url":"https://github.com/hammerlab/guacamole/pull/163.patch","issue_url":"https://api.github.com/repos/hammerlab/guacamole/issues/163","number":163,"state":"open","locked":false,"title":"New genotype and somaticgenotype to store more intermediate statistics","user":{"login":"arahuja","id":455755,"avatar_url":"https://avatars.githubusercontent.com/u/455755?v=2","gravatar_id":"986d1d6acfebde8f7d6e46aaf3d39acc","url":"https://api.github.com/users/arahuja","html_url":"https://github.com/arahuja","followers_url":"https://api.github.com/users/arahuja/followers","following_url":"https://api.github.com/users/arahuja/following{/other_user}","gists_url":"https://api.github.com/users/arahuja/gists{/gist_id}","starred_url":"https://api.github.com/users/arahuja/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/arahuja/subscriptions","organizations_url":"https://api.github.com/users/arahuja/orgs","repos_url":"https://api.github.com/users/arahuja/repos","events_url":"https://api.github.com/users/arahuja/events{/privacy}","received_events_url":"https://api.github.com/users/arahuja/received_events","type":"User","site_admin":false},"body":"- Added new CalledGenotype and CalledSomaticGenotype (and Kryo serializers) to save more intermediate variant calling information used for filtering\r\n\r\nThis also makes a distinctions between germline and somatic calls to the filters can be applied appropriately.  Part of breaking down #147 and is dependent on #162 ","created_at":"2014-09-08T15:04:29Z","updated_at":"2014-09-16T14:16:15Z","closed_at":null,"merged_at":null,"merge_commit_sha":"33213f6c5d9759059904b7fd455590465b436fe1","assignee":{"login":"ryan-williams","id":465045,"avatar_url":"https://avatars.githubusercontent.com/u/465045?v=2","gravatar_id":"e26c2679c3679018dd705d613537f91c","url":"https://api.github.com/users/ryan-williams","html_url":"https://github.com/ryan-williams","followers_url":"https://api.github.com/users/ryan-williams/followers","following_url":"https://api.github.com/users/ryan-williams/following{/other_user}","gists_url":"https://api.github.com/users/ryan-williams/gists{/gist_id}","starred_url":"https://api.github.com/users/ryan-williams/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/ryan-williams/subscriptions","organizations_url":"https://api.github.com/users/ryan-williams/orgs","repos_url":"https://api.github.com/users/ryan-williams/repos","events_url":"https://api.github.com/users/ryan-williams/events{/privacy}","received_events_url":"https://api.github.com/users/ryan-williams/received_events","type":"User","site_admin":false},"milestone":null,"commits_url":"https://api.github.com/repos/hammerlab/guacamole/pulls/163/commits","review_comments_url":"https://api.github.com/repos/hammerlab/guacamole/pulls/163/comments","review_comment_url":"https://api.github.com/repos/hammerlab/guacamole/pulls/comments/{number}","comments_url":"https://api.github.com/repos/hammerlab/guacamole/issues/163/comments","statuses_url":"https://api.github.com/repos/hammerlab/guacamole/statuses/f660284254ad32151083096d849c21473acc6cea","head":{"label":"hammerlab:variant-genotype","ref":"variant-genotype","sha":"f660284254ad32151083096d849c21473acc6cea","user":{"login":"hammerlab","id":6563873,"avatar_url":"https://avatars.githubusercontent.com/u/6563873?v=2","gravatar_id":"b2ae0016d5cb6ef6df51cea0452b7c04","url":"https://api.github.com/users/hammerlab","html_url":"https://github.com/hammerlab","followers_url":"https://api.github.com/users/hammerlab/followers","following_url":"https://api.github.com/users/hammerlab/following{/other_user}","gists_url":"https://api.github.com/users/hammerlab/gists{/gist_id}","starred_url":"https://api.github.com/users/hammerlab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hammerlab/subscriptions","organizations_url":"https://api.github.com/users/hammerlab/orgs","repos_url":"https://api.github.com/users/hammerlab/repos","events_url":"https://api.github.com/users/hammerlab/events{/privacy}","received_events_url":"https://api.github.com/users/hammerlab/received_events","type":"Organization","site_admin":false},"repo":{"id":18748250,"name":"guacamole","full_name":"hammerlab/guacamole","owner":{"login":"hammerlab","id":6563873,"avatar_url":"https://avatars.githubusercontent.com/u/6563873?v=2","gravatar_id":"b2ae0016d5cb6ef6df51cea0452b7c04","url":"https://api.github.com/users/hammerlab","html_url":"https://github.com/hammerlab","followers_url":"https://api.github.com/users/hammerlab/followers","following_url":"https://api.github.com/users/hammerlab/following{/other_user}","gists_url":"https://api.github.com/users/hammerlab/gists{/gist_id}","starred_url":"https://api.github.com/users/hammerlab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hammerlab/subscriptions","organizations_url":"https://api.github.com/users/hammerlab/orgs","repos_url":"https://api.github.com/users/hammerlab/repos","events_url":"https://api.github.com/users/hammerlab/events{/privacy}","received_events_url":"https://api.github.com/users/hammerlab/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/hammerlab/guacamole","description":"simple Spark-based variant calling","fork":false,"url":"https://api.github.com/repos/hammerlab/guacamole","forks_url":"https://api.github.com/repos/hammerlab/guacamole/forks","keys_url":"https://api.github.com/repos/hammerlab/guacamole/keys{/key_id}","collaborators_url":"https://api.github.com/repos/hammerlab/guacamole/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/hammerlab/guacamole/teams","hooks_url":"https://api.github.com/repos/hammerlab/guacamole/hooks","issue_events_url":"https://api.github.com/repos/hammerlab/guacamole/issues/events{/number}","events_url":"https://api.github.com/repos/hammerlab/guacamole/events","assignees_url":"https://api.github.com/repos/hammerlab/guacamole/assignees{/user}","branches_url":"https://api.github.com/repos/hammerlab/guacamole/branches{/branch}","tags_url":"https://api.github.com/repos/hammerlab/guacamole/tags","blobs_url":"https://api.github.com/repos/hammerlab/guacamole/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/hammerlab/guacamole/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/hammerlab/guacamole/git/refs{/sha}","trees_url":"https://api.github.com/repos/hammerlab/guacamole/git/trees{/sha}","statuses_url":"https://api.github.com/repos/hammerlab/guacamole/statuses/{sha}","languages_url":"https://api.github.com/repos/hammerlab/guacamole/languages","stargazers_url":"https://api.github.com/repos/hammerlab/guacamole/stargazers","contributors_url":"https://api.github.com/repos/hammerlab/guacamole/contributors","subscribers_url":"https://api.github.com/repos/hammerlab/guacamole/subscribers","subscription_url":"https://api.github.com/repos/hammerlab/guacamole/subscription","commits_url":"https://api.github.com/repos/hammerlab/guacamole/commits{/sha}","git_commits_url":"https://api.github.com/repos/hammerlab/guacamole/git/commits{/sha}","comments_url":"https://api.github.com/repos/hammerlab/guacamole/comments{/number}","issue_comment_url":"https://api.github.com/repos/hammerlab/guacamole/issues/comments/{number}","contents_url":"https://api.github.com/repos/hammerlab/guacamole/contents/{+path}","compare_url":"https://api.github.com/repos/hammerlab/guacamole/compare/{base}...{head}","merges_url":"https://api.github.com/repos/hammerlab/guacamole/merges","archive_url":"https://api.github.com/repos/hammerlab/guacamole/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/hammerlab/guacamole/downloads","issues_url":"https://api.github.com/repos/hammerlab/guacamole/issues{/number}","pulls_url":"https://api.github.com/repos/hammerlab/guacamole/pulls{/number}","milestones_url":"https://api.github.com/repos/hammerlab/guacamole/milestones{/number}","notifications_url":"https://api.github.com/repos/hammerlab/guacamole/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/hammerlab/guacamole/labels{/name}","releases_url":"https://api.github.com/repos/hammerlab/guacamole/releases{/id}","created_at":"2014-04-14T04:22:46Z","updated_at":"2014-09-02T19:36:01Z","pushed_at":"2014-09-16T06:43:54Z","git_url":"git://github.com/hammerlab/guacamole.git","ssh_url":"git@github.com:hammerlab/guacamole.git","clone_url":"https://github.com/hammerlab/guacamole.git","svn_url":"https://github.com/hammerlab/guacamole","homepage":"","size":37100,"stargazers_count":6,"watchers_count":6,"language":"Scala","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":true,"forks_count":1,"mirror_url":null,"open_issues_count":32,"forks":1,"open_issues":32,"watchers":6,"default_branch":"master"}},"base":{"label":"hammerlab:master","ref":"master","sha":"1c75e500dc2ff5972b1dc94e9e93ef1d5bfaf504","user":{"login":"hammerlab","id":6563873,"avatar_url":"https://avatars.githubusercontent.com/u/6563873?v=2","gravatar_id":"b2ae0016d5cb6ef6df51cea0452b7c04","url":"https://api.github.com/users/hammerlab","html_url":"https://github.com/hammerlab","followers_url":"https://api.github.com/users/hammerlab/followers","following_url":"https://api.github.com/users/hammerlab/following{/other_user}","gists_url":"https://api.github.com/users/hammerlab/gists{/gist_id}","starred_url":"https://api.github.com/users/hammerlab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hammerlab/subscriptions","organizations_url":"https://api.github.com/users/hammerlab/orgs","repos_url":"https://api.github.com/users/hammerlab/repos","events_url":"https://api.github.com/users/hammerlab/events{/privacy}","received_events_url":"https://api.github.com/users/hammerlab/received_events","type":"Organization","site_admin":false},"repo":{"id":18748250,"name":"guacamole","full_name":"hammerlab/guacamole","owner":{"login":"hammerlab","id":6563873,"avatar_url":"https://avatars.githubusercontent.com/u/6563873?v=2","gravatar_id":"b2ae0016d5cb6ef6df51cea0452b7c04","url":"https://api.github.com/users/hammerlab","html_url":"https://github.com/hammerlab","followers_url":"https://api.github.com/users/hammerlab/followers","following_url":"https://api.github.com/users/hammerlab/following{/other_user}","gists_url":"https://api.github.com/users/hammerlab/gists{/gist_id}","starred_url":"https://api.github.com/users/hammerlab/starred{/owner}{/repo}","subscriptions_url":"https://api.github.com/users/hammerlab/subscriptions","organizations_url":"https://api.github.com/users/hammerlab/orgs","repos_url":"https://api.github.com/users/hammerlab/repos","events_url":"https://api.github.com/users/hammerlab/events{/privacy}","received_events_url":"https://api.github.com/users/hammerlab/received_events","type":"Organization","site_admin":false},"private":false,"html_url":"https://github.com/hammerlab/guacamole","description":"simple Spark-based variant calling","fork":false,"url":"https://api.github.com/repos/hammerlab/guacamole","forks_url":"https://api.github.com/repos/hammerlab/guacamole/forks","keys_url":"https://api.github.com/repos/hammerlab/guacamole/keys{/key_id}","collaborators_url":"https://api.github.com/repos/hammerlab/guacamole/collaborators{/collaborator}","teams_url":"https://api.github.com/repos/hammerlab/guacamole/teams","hooks_url":"https://api.github.com/repos/hammerlab/guacamole/hooks","issue_events_url":"https://api.github.com/repos/hammerlab/guacamole/issues/events{/number}","events_url":"https://api.github.com/repos/hammerlab/guacamole/events","assignees_url":"https://api.github.com/repos/hammerlab/guacamole/assignees{/user}","branches_url":"https://api.github.com/repos/hammerlab/guacamole/branches{/branch}","tags_url":"https://api.github.com/repos/hammerlab/guacamole/tags","blobs_url":"https://api.github.com/repos/hammerlab/guacamole/git/blobs{/sha}","git_tags_url":"https://api.github.com/repos/hammerlab/guacamole/git/tags{/sha}","git_refs_url":"https://api.github.com/repos/hammerlab/guacamole/git/refs{/sha}","trees_url":"https://api.github.com/repos/hammerlab/guacamole/git/trees{/sha}","statuses_url":"https://api.github.com/repos/hammerlab/guacamole/statuses/{sha}","languages_url":"https://api.github.com/repos/hammerlab/guacamole/languages","stargazers_url":"https://api.github.com/repos/hammerlab/guacamole/stargazers","contributors_url":"https://api.github.com/repos/hammerlab/guacamole/contributors","subscribers_url":"https://api.github.com/repos/hammerlab/guacamole/subscribers","subscription_url":"https://api.github.com/repos/hammerlab/guacamole/subscription","commits_url":"https://api.github.com/repos/hammerlab/guacamole/commits{/sha}","git_commits_url":"https://api.github.com/repos/hammerlab/guacamole/git/commits{/sha}","comments_url":"https://api.github.com/repos/hammerlab/guacamole/comments{/number}","issue_comment_url":"https://api.github.com/repos/hammerlab/guacamole/issues/comments/{number}","contents_url":"https://api.github.com/repos/hammerlab/guacamole/contents/{+path}","compare_url":"https://api.github.com/repos/hammerlab/guacamole/compare/{base}...{head}","merges_url":"https://api.github.com/repos/hammerlab/guacamole/merges","archive_url":"https://api.github.com/repos/hammerlab/guacamole/{archive_format}{/ref}","downloads_url":"https://api.github.com/repos/hammerlab/guacamole/downloads","issues_url":"https://api.github.com/repos/hammerlab/guacamole/issues{/number}","pulls_url":"https://api.github.com/repos/hammerlab/guacamole/pulls{/number}","milestones_url":"https://api.github.com/repos/hammerlab/guacamole/milestones{/number}","notifications_url":"https://api.github.com/repos/hammerlab/guacamole/notifications{?since,all,participating}","labels_url":"https://api.github.com/repos/hammerlab/guacamole/labels{/name}","releases_url":"https://api.github.com/repos/hammerlab/guacamole/releases{/id}","created_at":"2014-04-14T04:22:46Z","updated_at":"2014-09-02T19:36:01Z","pushed_at":"2014-09-16T06:43:54Z","git_url":"git://github.com/hammerlab/guacamole.git","ssh_url":"git@github.com:hammerlab/guacamole.git","clone_url":"https://github.com/hammerlab/guacamole.git","svn_url":"https://github.com/hammerlab/guacamole","homepage":"","size":37100,"stargazers_count":6,"watchers_count":6,"language":"Scala","has_issues":true,"has_downloads":true,"has_wiki":true,"has_pages":true,"forks_count":1,"mirror_url":null,"open_issues_count":32,"forks":1,"open_issues":32,"watchers":6,"default_branch":"master"}},"_links":{"self":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/163"},"html":{"href":"https://github.com/hammerlab/guacamole/pull/163"},"issue":{"href":"https://api.github.com/repos/hammerlab/guacamole/issues/163"},"comments":{"href":"https://api.github.com/repos/hammerlab/guacamole/issues/163/comments"},"review_comments":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/163/comments"},"review_comment":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/comments/{number}"},"commits":{"href":"https://api.github.com/repos/hammerlab/guacamole/pulls/163/commits"},"statuses":{"href":"https://api.github.com/repos/hammerlab/guacamole/statuses/f660284254ad32151083096d849c21473acc6cea"}}}}