GitHub PushEvent at 2014-11-14 10:18:18
Repository: public-workflows
Actor: keiranmraine
Payload: {"shas":[["76d275a9411751159d6eba85f12e7c613c91b6c4","953f3aee4d2340850cea37dcfa1f1c82cff6561c@gmail.com","JSON timing and qc metrics completion\n\nCorrected the command line args and functions to pull in the timing and qc metrics\n\nPair this with script https://github.com/ICGC-TCGA-PanCancer/SeqWare-CGP-SomaticCore/blob/feature/qc_and_timing/workflow/bin/qc_and_metrics.pl which generates the core JSON\nand the following function when setting up the job in the workflow:\n\nhttps://github.com/ICGC-TCGA-PanCancer/SeqWare-CGP-SomaticCore/blob/feature/qc_and_timing/src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java#L859-L864\n\nalso markTime for the start and end of the workflow:\n\nhttps://github.com/ICGC-TCGA-PanCancer/SeqWare-CGP-SomaticCore/blob/feature/qc_and_timing/src/main/java/io/seqware/pancancer/CgpCnIndelSnvStrWorkflow.java#L840-L845","Keiran M Raine",true]],"size":1,"ref":"refs/heads/feature/vcfUp_metricArgs","head":"76d275a9411751159d6eba85f12e7c613c91b6c4"}